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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: MS4A6E (CAeditome ID:245802)

Gene summary for MS4A6E

check button Gene summary
Gene informationGene symbol

MS4A6E

Gene ID

245802

Gene namemembrane spanning 4-domains A6E
Synonyms-
Cytomap

11q12.2

Type of geneprotein-coding
Descriptionmembrane-spanning 4-domains subfamily A member 6Emembrane-spanning 4-domains, subfamily A, member 6E
Modification date20210518
UniProtAcc

Q96DS6

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for MS4A6E

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000166926.7
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_816201(60365876, +), CAediting_816202(60366018, +), CAediting_816203(60366283, +), CAediting_816204(60366734, +), CAediting_816205(60366735, +), CAediting_816206(60383706, +), CAediting_816207(60385617, +), CAediting_816208(60385628, +), CAediting_816209(60385636, +), CAediting_816210(60385641, +), CAediting_816211(60385664, +), CAediting_816212(60385673, +), CAediting_816213(60385674, +), CAediting_816214(60385712, +), CAediting_816215(60385728, +), CAediting_816216(60385731, +), CAediting_816217(60385733, +), CAediting_816218(60385736, +), CAediting_816219(60385760, +), CAediting_816220(60385761, +), CAediting_816221(60385785, +), CAediting_816222(60387365, +), CAediting_816223(60387409, +), CAediting_816224(60387648, +), CAediting_816225(60387649, +), CAediting_816226(60387654, +), CAediting_816227(60387659, +), CAediting_816228(60387662, +), CAediting_816229(60387665, +), CAediting_816230(60387674, +), CAediting_816231(60387680, +), CAediting_816232(60387683, +), CAediting_816233(60387685, +), CAediting_816234(60387700, +), CAediting_816235(60387703, +), CAediting_816236(60387704, +), CAediting_816237(60387709, +), CAediting_816238(60387712, +), CAediting_816239(60387718, +), CAediting_816240(60387720, +), CAediting_816241(60387728, +), CAediting_816242(60387729, +), CAediting_816243(60387738, +), CAediting_816244(60387741, +), CAediting_816245(60387763, +), CAediting_816246(60387766, +), CAediting_816247(60387786, +), CAediting_816248(60387790, +), CAediting_816249(60387792, +), CAediting_816250(60387793, +), CAediting_816251(60387804, +), CAediting_816252(60387809, +), CAediting_816253(60387810, +), CAediting_816254(60387811, +), CAediting_816255(60387815, +), CAediting_816256(60387816, +), CAediting_816257(60387818, +), CAediting_816258(60387821, +), CAediting_816259(60387822, +), CAediting_816260(60387823, +), CAediting_816261(60387827, +), CAediting_816262(60387828, +), CAediting_816263(60388262, +), CAediting_816264(60388759, +), CAediting_816265(60388912, +), CAediting_816266(60388993, +), CAediting_816267(60389001, +), CAediting_816268(60389003, +), CAediting_816269(60389012, +), CAediting_816270(60389013, +), CAediting_816271(60389020, +), CAediting_816272(60389025, +), CAediting_816273(60389028, +), CAediting_816274(60389035, +), CAediting_816275(60389036, +), CAediting_816276(60389040, +), CAediting_816277(60389043, +), CAediting_816278(60389045, +), CAediting_816279(60389046, +), CAediting_816280(60389054, +), CAediting_816281(60389060, +), CAediting_816282(60389068, +), CAediting_816283(60389079, +), CAediting_816284(60389087, +), CAediting_816285(60389099, +), CAediting_816286(60391641, +), CAediting_816287(60391723, +), CAediting_816288(60391754, +), CAediting_816289(60391825, +), CAediting_816290(60392943, +), CAediting_816291(60392944, +), CAediting_816292(60392978, +), CAediting_816293(60393027, +), CAediting_816294(60394323, +), CAediting_816295(60394344, +), CAediting_816296(60394347, +), CAediting_816297(60394354, +), CAediting_816298(60394368, +), CAediting_816299(60394382, +), CAediting_816300(60394383, +), CAediting_816301(60394390, +), CAediting_816302(60394396, +), CAediting_816303(60394403, +), CAediting_816304(60394404, +), CAediting_816305(60394408, +), CAediting_816306(60394410, +), CAediting_816307(60394413, +), CAediting_816308(60394414, +), CAediting_816309(60394441, +), CAediting_816310(60394455, +), CAediting_816311(60394464, +), CAediting_816312(60394492, +), CAediting_816313(60394545, +), CAediting_816314(60394591, +), CAediting_816315(60394602, +), CAediting_816316(60394614, +), CAediting_816317(60394615, +), CAediting_816318(60394652, +), CAediting_816319(60394659, +), CAediting_816320(60394687, +), CAediting_816321(60394691, +), CAediting_816322(60394698, +), CAediting_816323(60394704, +), CAediting_816324(60394722, +), CAediting_816325(60394723, +), CAediting_816326(60394730, +), CAediting_816327(60394731, +), CAediting_816328(60394747, +), CAediting_816329(60394759, +), CAediting_816330(60394788, +), CAediting_816331(60394790, +),

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RNA editing positional annotations for MS4A6E using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_816201chr11_60365876_+intronic
CAediting_816202chr11_60366018_+intronic
CAediting_816203chr11_60366283_+intronic
CAediting_816204chr11_60366734_+intronic
CAediting_816205chr11_60366735_+intronic
CAediting_816206chr11_60383706_+ncRNA_intronic
CAediting_816207chr11_60385617_+ncRNA_intronic
CAediting_816208chr11_60385628_+ncRNA_intronic
CAediting_816209chr11_60385636_+ncRNA_intronic
CAediting_816210chr11_60385641_+ncRNA_intronic
CAediting_816211chr11_60385664_+ncRNA_intronic
CAediting_816212chr11_60385673_+ncRNA_intronic
CAediting_816213chr11_60385674_+ncRNA_intronic
CAediting_816214chr11_60385712_+ncRNA_intronic
CAediting_816215chr11_60385728_+ncRNA_intronic
CAediting_816216chr11_60385731_+ncRNA_intronic
CAediting_816217chr11_60385733_+ncRNA_intronic
CAediting_816218chr11_60385736_+ncRNA_intronic
CAediting_816219chr11_60385760_+ncRNA_intronic
CAediting_816220chr11_60385761_+ncRNA_intronic
CAediting_816221chr11_60385785_+ncRNA_intronic
CAediting_816222chr11_60387365_+ncRNA_intronic
CAediting_816223chr11_60387409_+ncRNA_intronic
CAediting_816224chr11_60387648_+ncRNA_intronic
CAediting_816225chr11_60387649_+ncRNA_intronic
CAediting_816226chr11_60387654_+ncRNA_intronic
CAediting_816227chr11_60387659_+ncRNA_intronic
CAediting_816228chr11_60387662_+ncRNA_intronic
CAediting_816229chr11_60387665_+ncRNA_intronic
CAediting_816230chr11_60387674_+ncRNA_intronic
CAediting_816231chr11_60387680_+ncRNA_intronic
CAediting_816232chr11_60387683_+ncRNA_intronic
CAediting_816233chr11_60387685_+ncRNA_intronic
CAediting_816234chr11_60387700_+ncRNA_intronic
CAediting_816235chr11_60387703_+ncRNA_intronic
CAediting_816236chr11_60387704_+ncRNA_intronic
CAediting_816237chr11_60387709_+ncRNA_intronic
CAediting_816238chr11_60387712_+ncRNA_intronic
CAediting_816239chr11_60387718_+ncRNA_intronic
CAediting_816240chr11_60387720_+ncRNA_intronic
CAediting_816241chr11_60387728_+ncRNA_intronic
CAediting_816242chr11_60387729_+ncRNA_intronic
CAediting_816243chr11_60387738_+ncRNA_intronic
CAediting_816244chr11_60387741_+ncRNA_intronic
CAediting_816245chr11_60387763_+ncRNA_intronic
CAediting_816246chr11_60387766_+ncRNA_intronic
CAediting_816247chr11_60387786_+ncRNA_intronic
CAediting_816248chr11_60387790_+ncRNA_intronic
CAediting_816249chr11_60387792_+ncRNA_intronic
CAediting_816250chr11_60387793_+ncRNA_intronic
CAediting_816251chr11_60387804_+ncRNA_intronic
CAediting_816252chr11_60387809_+ncRNA_intronic
CAediting_816253chr11_60387810_+ncRNA_intronic
CAediting_816254chr11_60387811_+ncRNA_intronic
CAediting_816255chr11_60387815_+ncRNA_intronic
CAediting_816256chr11_60387816_+ncRNA_intronic
CAediting_816257chr11_60387818_+ncRNA_intronic
CAediting_816258chr11_60387821_+ncRNA_intronic
CAediting_816259chr11_60387822_+ncRNA_intronic
CAediting_816260chr11_60387823_+ncRNA_intronic
CAediting_816261chr11_60387827_+ncRNA_intronic
CAediting_816262chr11_60387828_+ncRNA_intronic
CAediting_816263chr11_60388262_+ncRNA_intronic
CAediting_816264chr11_60388759_+ncRNA_intronic
CAediting_816265chr11_60388912_+ncRNA_intronic
CAediting_816266chr11_60388993_+ncRNA_intronic
CAediting_816267chr11_60389001_+ncRNA_intronic
CAediting_816268chr11_60389003_+ncRNA_intronic
CAediting_816269chr11_60389012_+ncRNA_intronic
CAediting_816270chr11_60389013_+ncRNA_intronic
CAediting_816271chr11_60389020_+ncRNA_intronic
CAediting_816272chr11_60389025_+ncRNA_intronic
CAediting_816273chr11_60389028_+ncRNA_intronic
CAediting_816274chr11_60389035_+ncRNA_intronic
CAediting_816275chr11_60389036_+ncRNA_exonic
CAediting_816276chr11_60389040_+ncRNA_exonic
CAediting_816277chr11_60389043_+ncRNA_exonic
CAediting_816278chr11_60389045_+ncRNA_exonic
CAediting_816279chr11_60389046_+ncRNA_exonic
CAediting_816280chr11_60389054_+ncRNA_exonic
CAediting_816281chr11_60389060_+ncRNA_exonic
CAediting_816282chr11_60389068_+ncRNA_exonic
CAediting_816283chr11_60389079_+ncRNA_exonic
CAediting_816284chr11_60389087_+ncRNA_exonic
CAediting_816285chr11_60389099_+ncRNA_exonic
CAediting_816286chr11_60391641_+ncRNA_intronic
CAediting_816287chr11_60391723_+ncRNA_intronic
CAediting_816288chr11_60391754_+ncRNA_intronic
CAediting_816289chr11_60391825_+ncRNA_intronic
CAediting_816290chr11_60392943_+ncRNA_intronic
CAediting_816291chr11_60392944_+ncRNA_intronic
CAediting_816292chr11_60392978_+ncRNA_intronic
CAediting_816293chr11_60393027_+ncRNA_intronic
CAediting_816294chr11_60394323_+UTR3
CAediting_816295chr11_60394344_+UTR3
CAediting_816296chr11_60394347_+UTR3
CAediting_816297chr11_60394354_+UTR3
CAediting_816298chr11_60394368_+UTR3
CAediting_816299chr11_60394382_+UTR3
CAediting_816300chr11_60394383_+UTR3
CAediting_816301chr11_60394390_+UTR3
CAediting_816302chr11_60394396_+UTR3
CAediting_816303chr11_60394403_+UTR3
CAediting_816304chr11_60394404_+UTR3
CAediting_816305chr11_60394408_+UTR3
CAediting_816306chr11_60394410_+UTR3
CAediting_816307chr11_60394413_+UTR3
CAediting_816308chr11_60394414_+UTR3
CAediting_816309chr11_60394441_+UTR3
CAediting_816310chr11_60394455_+UTR3
CAediting_816311chr11_60394464_+UTR3
CAediting_816312chr11_60394492_+UTR3
CAediting_816313chr11_60394545_+UTR3
CAediting_816314chr11_60394591_+UTR3
CAediting_816315chr11_60394602_+UTR3
CAediting_816316chr11_60394614_+UTR3
CAediting_816317chr11_60394615_+UTR3
CAediting_816318chr11_60394652_+UTR3
CAediting_816319chr11_60394659_+UTR3
CAediting_816320chr11_60394687_+UTR3
CAediting_816321chr11_60394691_+UTR3
CAediting_816322chr11_60394698_+UTR3
CAediting_816323chr11_60394704_+UTR3
CAediting_816324chr11_60394722_+UTR3
CAediting_816325chr11_60394723_+UTR3
CAediting_816326chr11_60394730_+UTR3
CAediting_816327chr11_60394731_+UTR3
CAediting_816328chr11_60394747_+UTR3
CAediting_816329chr11_60394759_+UTR3
CAediting_816330chr11_60394788_+UTR3
CAediting_816331chr11_60394790_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_816201chr11_60365876_+SINEAluAluSx1
CAediting_816202chr11_60366018_+SINEAluAluSx
CAediting_816203chr11_60366283_+LTRERV1LTR8
CAediting_816204chr11_60366734_+SINEAluAluY
CAediting_816205chr11_60366735_+SINEAluAluY
CAediting_816206chr11_60383706_+SINEAluAluSx4
CAediting_816263chr11_60388262_+SINEMIRMIR3
CAediting_816286chr11_60391641_+SINEAluAluSx
CAediting_816287chr11_60391723_+SINEAluAluSx
CAediting_816288chr11_60391754_+SINEAluAluSx
CAediting_816289chr11_60391825_+SINEAluAluSx
CAediting_816290chr11_60392943_+SINEAluAluSc8
CAediting_816291chr11_60392944_+SINEAluAluSc8
CAediting_816292chr11_60392978_+SINEAluAluSc8
CAediting_816293chr11_60393027_+SINEAluAluSc8
CAediting_816313chr11_60394545_+SINEAluAluSx3
CAediting_816314chr11_60394591_+SINEAluAluSx3
CAediting_816315chr11_60394602_+SINEAluAluSx3
CAediting_816316chr11_60394614_+SINEAluAluSx3
CAediting_816317chr11_60394615_+SINEAluAluSx3
CAediting_816318chr11_60394652_+SINEAluAluSx3
CAediting_816319chr11_60394659_+SINEAluAluSx3
CAediting_816320chr11_60394687_+SINEAluAluSx3
CAediting_816321chr11_60394691_+SINEAluAluSx3
CAediting_816322chr11_60394698_+SINEAluAluSx3
CAediting_816323chr11_60394704_+SINEAluAluSx3
CAediting_816324chr11_60394722_+SINEAluAluSx3
CAediting_816325chr11_60394723_+SINEAluAluSx3
CAediting_816326chr11_60394730_+SINEAluAluSx3
CAediting_816327chr11_60394731_+SINEAluAluSx3
CAediting_816328chr11_60394747_+SINEAluAluSx3
CAediting_816329chr11_60394759_+SINEAluAluSx3
CAediting_816330chr11_60394788_+SINEAluAluSx3
CAediting_816331chr11_60394790_+SINEAluAluSx3

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RNA A-to-I editing events in the alternative splicing sites for MS4A6E

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166926.7.MS4A6E.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000166926.7.MS4A6E.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for MS4A6E

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for MS4A6E

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for MS4A6E

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_524911chr7_5495852_-ENSG00000166926.7ENST00000530509hsa-miR-589-3p60337772603377787mer-m86033775560337779145-21.73

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for MS4A6E

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for MS4A6E

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_816228chr11_60387662_+0.001654350989569340.309193737021557....
BRCACAediting_816261chr11_60387827_+0.0007685268664755210.366373719265717....
BRCACAediting_816265chr11_60388912_+1.99588188965885e-060.364522931731586....
BRCACAediting_816279chr11_60389046_+....0.03133137340002620.204488782764095
BRCACAediting_816281chr11_60389060_+0.0001159659354272110.281092503997677....

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Relation with cancer stages for MS4A6E

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BRCApathologic_stageCAediting_816265chr11_60388912_+0.01483078017495630.194150161302929
BRCApathologic_stageCAediting_816281chr11_60389060_+0.007056996823653050.201845635279292
KIRCpathologic_stageCAediting_816228chr11_60387662_+0.01802902341229610.278065998022597
KIRCpathologic_stageCAediting_816242chr11_60387729_+0.001192313763164890.402224205516184
KIRCpathologic_stageCAediting_816281chr11_60389060_+0.01035732604500080.211581441464879

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Relation with survival for MS4A6E

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
KIRCCAediting_816228chr11_60387662_+0.04860949567135830.011003250.3531

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RelatedDrugs for MS4A6E

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for MS4A6E

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource