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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: PHLDA3 (CAeditome ID:23612) |
Gene summary for PHLDA3 |
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Gene information | Gene symbol | PHLDA3 | Gene ID | 23612 |
Gene name | pleckstrin homology like domain family A member 3 | |
Synonyms | TIH1 | |
Cytomap | 1q32.1 | |
Type of gene | protein-coding | |
Description | pleckstrin homology-like domain family A member 3TDAG51/Ipl homolog 1pleckstrin homology-like domain, family A, member 2 | |
Modification date | 20210518 | |
UniProtAcc | Q9Y5J5 | |
Context | - 34006890(PHLDA3 promotes lung adenocarcinoma cell proliferation and invasion via activation of the Wnt signaling pathway) |
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Gene | GO ID | GO term | PubMed ID |
PHLDA3 | GO:0005546 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0005547 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0010314 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0032266 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0043325 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0080025 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0042771 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0043065 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0051898 | Pleckstrin homology-like domain family A member 3 | 19203586 |
PHLDA3 | GO:0005886 | Pleckstrin homology-like domain family A member 3 | 19203586 |
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RNA A-to-I events for PHLDA3 |
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CAediting_129376(201464839, -), CAediting_129377(201464855, -), CAediting_129378(201464873, -), CAediting_129379(201464889, -), CAediting_129380(201464891, -), CAediting_129381(201464898, -), CAediting_129382(201464902, -), CAediting_129383(201464909, -), CAediting_129384(201464910, -), CAediting_129385(201464918, -), CAediting_129386(201464921, -), CAediting_129387(201464924, -), CAediting_129388(201464952, -), CAediting_129389(201464958, -), CAediting_129390(201464960, -), CAediting_129391(201464962, -), CAediting_129392(201464969, -), CAediting_129393(201464974, -), CAediting_129394(201464978, -), CAediting_129395(201464981, -), CAediting_129396(201464983, -), CAediting_129397(201464990, -), CAediting_129398(201465005, -), CAediting_129399(201465039, -), CAediting_129400(201465044, -), CAediting_129401(201465062, -), CAediting_129402(201465068, -), CAediting_129403(201465079, -), CAediting_129404(201465080, -), CAediting_129405(201465084, -), CAediting_129406(201465085, -), CAediting_129407(201465103, -), CAediting_129408(201466568, -), CAediting_129409(201466572, -), CAediting_129410(201466573, -), CAediting_129411(201466615, -), CAediting_129412(201466624, -), CAediting_129413(201466630, -), CAediting_129414(201466724, -), CAediting_129415(201467090, -), CAediting_129416(201467094, -), CAediting_129417(201467180, -), CAediting_129418(201467184, -), CAediting_129419(201467212, -), CAediting_129420(201467275, -), CAediting_129421(201467548, -), CAediting_129422(201467549, -), CAediting_129423(201467575, -), CAediting_129424(201468765, -), |
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RNA editing positional annotations for PHLDA3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_129376 | chr1_201464839_- | ncRNA_exonic |
CAediting_129377 | chr1_201464855_- | ncRNA_exonic |
CAediting_129378 | chr1_201464873_- | ncRNA_exonic |
CAediting_129379 | chr1_201464889_- | ncRNA_exonic |
CAediting_129380 | chr1_201464891_- | ncRNA_exonic |
CAediting_129381 | chr1_201464898_- | ncRNA_intronic |
CAediting_129382 | chr1_201464902_- | ncRNA_intronic |
CAediting_129383 | chr1_201464909_- | ncRNA_intronic |
CAediting_129384 | chr1_201464910_- | ncRNA_intronic |
CAediting_129385 | chr1_201464918_- | ncRNA_intronic |
CAediting_129386 | chr1_201464921_- | ncRNA_intronic |
CAediting_129387 | chr1_201464924_- | ncRNA_intronic |
CAediting_129388 | chr1_201464952_- | ncRNA_intronic |
CAediting_129389 | chr1_201464958_- | ncRNA_intronic |
CAediting_129390 | chr1_201464960_- | ncRNA_intronic |
CAediting_129391 | chr1_201464962_- | ncRNA_intronic |
CAediting_129392 | chr1_201464969_- | ncRNA_intronic |
CAediting_129393 | chr1_201464974_- | ncRNA_intronic |
CAediting_129394 | chr1_201464978_- | ncRNA_intronic |
CAediting_129395 | chr1_201464981_- | ncRNA_intronic |
CAediting_129396 | chr1_201464983_- | ncRNA_intronic |
CAediting_129397 | chr1_201464990_- | ncRNA_intronic |
CAediting_129398 | chr1_201465005_- | ncRNA_intronic |
CAediting_129399 | chr1_201465039_- | ncRNA_intronic |
CAediting_129400 | chr1_201465044_- | ncRNA_intronic |
CAediting_129401 | chr1_201465062_- | ncRNA_exonic |
CAediting_129402 | chr1_201465068_- | ncRNA_exonic |
CAediting_129403 | chr1_201465079_- | ncRNA_exonic |
CAediting_129404 | chr1_201465080_- | ncRNA_exonic |
CAediting_129405 | chr1_201465084_- | ncRNA_exonic |
CAediting_129406 | chr1_201465085_- | ncRNA_exonic |
CAediting_129407 | chr1_201465103_- | ncRNA_exonic |
CAediting_129408 | chr1_201466568_- | ncRNA_exonic |
CAediting_129409 | chr1_201466572_- | ncRNA_exonic |
CAediting_129410 | chr1_201466573_- | ncRNA_exonic |
CAediting_129411 | chr1_201466615_- | ncRNA_exonic |
CAediting_129412 | chr1_201466624_- | ncRNA_exonic |
CAediting_129413 | chr1_201466630_- | ncRNA_exonic |
CAediting_129414 | chr1_201466724_- | ncRNA_intronic |
CAediting_129415 | chr1_201467090_- | ncRNA_intronic |
CAediting_129416 | chr1_201467094_- | ncRNA_intronic |
CAediting_129417 | chr1_201467180_- | ncRNA_intronic |
CAediting_129418 | chr1_201467184_- | ncRNA_intronic |
CAediting_129419 | chr1_201467212_- | ncRNA_intronic |
CAediting_129420 | chr1_201467275_- | ncRNA_intronic |
CAediting_129421 | chr1_201467548_- | ncRNA_exonic |
CAediting_129422 | chr1_201467549_- | ncRNA_exonic |
CAediting_129423 | chr1_201467575_- | ncRNA_exonic |
CAediting_129424 | chr1_201468765_- | exonic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_129376 | chr1_201464839_- | SINE | Alu | AluSx |
CAediting_129377 | chr1_201464855_- | SINE | Alu | AluSx |
CAediting_129378 | chr1_201464873_- | SINE | Alu | AluSx |
CAediting_129379 | chr1_201464889_- | SINE | Alu | AluSx |
CAediting_129380 | chr1_201464891_- | SINE | Alu | AluSx |
CAediting_129381 | chr1_201464898_- | SINE | Alu | AluSx |
CAediting_129382 | chr1_201464902_- | SINE | Alu | AluSx |
CAediting_129383 | chr1_201464909_- | SINE | Alu | AluSx |
CAediting_129384 | chr1_201464910_- | SINE | Alu | AluSx |
CAediting_129385 | chr1_201464918_- | SINE | Alu | AluSx |
CAediting_129386 | chr1_201464921_- | SINE | Alu | AluSx |
CAediting_129387 | chr1_201464924_- | SINE | Alu | AluSx |
CAediting_129388 | chr1_201464952_- | SINE | Alu | AluSx |
CAediting_129389 | chr1_201464958_- | SINE | Alu | AluSx |
CAediting_129390 | chr1_201464960_- | SINE | Alu | AluSx |
CAediting_129391 | chr1_201464962_- | SINE | Alu | AluSx |
CAediting_129392 | chr1_201464969_- | SINE | Alu | AluSx |
CAediting_129393 | chr1_201464974_- | SINE | Alu | AluSx |
CAediting_129394 | chr1_201464978_- | SINE | Alu | AluSx |
CAediting_129395 | chr1_201464981_- | SINE | Alu | AluSx |
CAediting_129396 | chr1_201464983_- | SINE | Alu | AluSx |
CAediting_129397 | chr1_201464990_- | SINE | Alu | AluSx |
CAediting_129398 | chr1_201465005_- | SINE | Alu | AluSx |
CAediting_129399 | chr1_201465039_- | SINE | Alu | AluSx |
CAediting_129400 | chr1_201465044_- | SINE | Alu | AluSx |
CAediting_129401 | chr1_201465062_- | SINE | Alu | AluSx |
CAediting_129402 | chr1_201465068_- | SINE | Alu | AluSx |
CAediting_129403 | chr1_201465079_- | SINE | Alu | AluSx |
CAediting_129404 | chr1_201465080_- | SINE | Alu | AluSx |
CAediting_129405 | chr1_201465084_- | SINE | Alu | AluSx |
CAediting_129406 | chr1_201465085_- | SINE | Alu | AluSx |
CAediting_129407 | chr1_201465103_- | SINE | Alu | AluSx |
CAediting_129414 | chr1_201466724_- | SINE | MIR | MIR1_Amn |
CAediting_129415 | chr1_201467090_- | SINE | Alu | AluJb |
CAediting_129416 | chr1_201467094_- | SINE | Alu | AluJb |
CAediting_129417 | chr1_201467180_- | SINE | Alu | AluJb |
CAediting_129418 | chr1_201467184_- | SINE | Alu | AluJb |
CAediting_129419 | chr1_201467212_- | SINE | Alu | AluJb |
CAediting_129420 | chr1_201467275_- | SINE | Alu | AluJb |
CAediting_129421 | chr1_201467548_- | SINE | Alu | AluSx1 |
CAediting_129422 | chr1_201467549_- | SINE | Alu | AluSx1 |
CAediting_129423 | chr1_201467575_- | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for PHLDA3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PHLDA3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for PHLDA3 |
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The effects of the RNA editing to the miRNA binding sites for PHLDA3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1399425 | chr20_1392958_- | ENSG00000174307.6 | ENST00000367309 | hsa-miR-6869-5p | 201468367 | 201468373 | 7mer-m8 | 201468366 | 201468387 | 142 | -18.25 |
CAediting_1368054 | chr19_46709310_- | ENSG00000174307.6 | ENST00000367309 | hsa-miR-320e | 201465986 | 201465993 | 8mer-1a | 201465986 | 201466004 | 147 | -18.3 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for PHLDA3 |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_129376 | ENST00000367311.4 | chr1_201464839_- | -1148.30 | -1145.70 | -1194.00 |
CAediting_129377 | ENST00000367311.4 | chr1_201464855_- | -1146.20 | -1145.70 | -1194.00 |
CAediting_129378 | ENST00000367311.4 | chr1_201464873_- | -1146.10 | -1145.70 | -1194.00 |
CAediting_129379 | ENST00000367311.4 | chr1_201464889_- | -1145.90 | -1145.70 | -1194.00 |
CAediting_129380 | ENST00000367311.4 | chr1_201464891_- | -1148.30 | -1145.70 | -1194.00 |
CAediting_129381 | ENST00000367311.4 | chr1_201464898_- | -1147.20 | -1145.70 | -1194.00 |
CAediting_129382 | ENST00000367311.4 | chr1_201464902_- | -1144.90 | -1145.70 | -1194.00 |
CAediting_129383 | ENST00000367311.4 | chr1_201464909_- | -1150.00 | -1145.70 | -1194.00 |
CAediting_129384 | ENST00000367311.4 | chr1_201464910_- | -1145.70 | -1145.70 | -1194.00 |
CAediting_129385 | ENST00000367311.4 | chr1_201464918_- | -1148.90 | -1145.70 | -1194.00 |
CAediting_129386 | ENST00000367311.4 | chr1_201464921_- | -1148.70 | -1145.70 | -1194.00 |
CAediting_129387 | ENST00000367311.4 | chr1_201464924_- | -1147.50 | -1145.70 | -1194.00 |
CAediting_129388 | ENST00000367311.4 | chr1_201464952_- | -1146.10 | -1145.70 | -1194.00 |
CAediting_129389 | ENST00000367311.4 | chr1_201464958_- | -1145.30 | -1145.70 | -1194.00 |
CAediting_129390 | ENST00000367311.4 | chr1_201464960_- | -1147.50 | -1145.70 | -1194.00 |
CAediting_129391 | ENST00000367311.4 | chr1_201464962_- | -1145.70 | -1145.70 | -1194.00 |
CAediting_129392 | ENST00000367311.4 | chr1_201464969_- | -1145.70 | -1145.70 | -1194.00 |
CAediting_129393 | ENST00000367311.4 | chr1_201464974_- | -1144.90 | -1145.70 | -1194.00 |
CAediting_129394 | ENST00000367311.4 | chr1_201464978_- | -1148.80 | -1145.70 | -1194.00 |
CAediting_129395 | ENST00000367311.4 | chr1_201464981_- | -1147.00 | -1145.70 | -1194.00 |
CAediting_129396 | ENST00000367311.4 | chr1_201464983_- | -1145.70 | -1145.70 | -1194.00 |
CAediting_129397 | ENST00000367311.4 | chr1_201464990_- | -1148.80 | -1145.70 | -1194.00 |
CAediting_129398 | ENST00000367311.4 | chr1_201465005_- | -1145.70 | -1145.70 | -1194.00 |
CAediting_129399 | ENST00000367311.4 | chr1_201465039_- | -1145.20 | -1145.70 | -1194.00 |
CAediting_129400 | ENST00000367311.4 | chr1_201465044_- | -1146.70 | -1145.70 | -1194.00 |
CAediting_129401 | ENST00000367311.4 | chr1_201465062_- | -1150.40 | -1145.70 | -1194.00 |
CAediting_129402 | ENST00000367311.4 | chr1_201465068_- | -1152.60 | -1145.70 | -1194.00 |
CAediting_129403 | ENST00000367311.4 | chr1_201465079_- | -1147.00 | -1145.70 | -1194.00 |
CAediting_129404 | ENST00000367311.4 | chr1_201465080_- | -1145.70 | -1145.70 | -1194.00 |
CAediting_129405 | ENST00000367311.4 | chr1_201465084_- | -1146.20 | -1145.70 | -1194.00 |
CAediting_129406 | ENST00000367311.4 | chr1_201465085_- | -1148.60 | -1145.70 | -1194.00 |
CAediting_129407 | ENST00000367311.4 | chr1_201465103_- | -1146.80 | -1145.70 | -1194.00 |
CAediting_129424 | ENST00000367311.4 | chr1_201468765_- | -1151.70 | -1145.70 | -1194.00 |
CAediting_129424 | ENST00000367309.1 | chr1_201468765_- | -451.20 | -445.30 | -451.20 |
CAediting_129421 | ENST00000485436.1 | chr1_201467548_- | -293.50 | -292.00 | -297.20 |
CAediting_129422 | ENST00000485436.1 | chr1_201467549_- | -292.20 | -292.00 | -297.20 |
CAediting_129423 | ENST00000485436.1 | chr1_201467575_- | -291.20 | -292.00 | -297.20 |
CAediting_129408 | ENST00000497057.1 | chr1_201466568_- | -233.90 | -233.90 | -246.10 |
CAediting_129409 | ENST00000497057.1 | chr1_201466572_- | -237.20 | -233.90 | -246.10 |
CAediting_129410 | ENST00000497057.1 | chr1_201466573_- | -233.10 | -233.90 | -246.10 |
CAediting_129411 | ENST00000497057.1 | chr1_201466615_- | -235.30 | -233.90 | -246.10 |
CAediting_129412 | ENST00000497057.1 | chr1_201466624_- | -239.50 | -233.90 | -246.10 |
CAediting_129413 | ENST00000497057.1 | chr1_201466630_- | -237.60 | -233.90 | -246.10 |
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Relation with ADAR for PHLDA3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
BLCA | CAediting_129408 | chr1_201466568_- | 0.0449770260336659 | 0.211887557382541 | . | . | . | . |
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Relation with cancer stages for PHLDA3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for PHLDA3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for PHLDA3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for PHLDA3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |