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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: AMACR (CAeditome ID:23600)

Gene summary for AMACR

check button Gene summary
Gene informationGene symbol

AMACR

Gene ID

23600

Gene namealpha-methylacyl-CoA racemase
SynonymsAMACRD|CBAS4|P504S|RACE|RM
Cytomap

5p13.2

Type of geneprotein-coding
Descriptionalpha-methylacyl-CoA racemase2-methylacyl-CoA racemase
Modification date20210518
UniProtAcc

Q9UHK6

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
AMACR

GO:0008111

Alpha-methylacyl-CoA racemase

11060359

AMACR

GO:0008111

Alpha-methylacyl-CoA racemase

7649182

AMACR

GO:0008206

Alpha-methylacyl-CoA racemase

10655068

AMACR

GO:0005737

Alpha-methylacyl-CoA racemase

15941950

AMACR

GO:0005739

Alpha-methylacyl-CoA racemase

11060359

AMACR

GO:0005739

Alpha-methylacyl-CoA racemase

20102405

AMACR

GO:0005739

Alpha-methylacyl-CoA racemase

7649182

AMACR

GO:0005777

Alpha-methylacyl-CoA racemase

11060359

AMACR

GO:0005777

Alpha-methylacyl-CoA racemase

7649182

AMACR

GO:0005886

Alpha-methylacyl-CoA racemase

0000052

AMACR

GO:0043231

Alpha-methylacyl-CoA racemase

0000052


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RNA A-to-I events for AMACR

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000242110.6

check button RNA A-to-I editing events in Cancer.
CAediting_401000(33987026, -), CAediting_401001(33987053, -), CAediting_401002(33987060, -), CAediting_401003(33987089, -), CAediting_401004(33987106, -), CAediting_401005(33987120, -), CAediting_401006(33987126, -), CAediting_401007(33987139, -), CAediting_401008(33987176, -), CAediting_401009(33987253, -), CAediting_401010(33991801, -), CAediting_401011(33992007, -), CAediting_401012(33992017, -), CAediting_401013(33992027, -), CAediting_401014(33992047, -), CAediting_401015(33992048, -), CAediting_401016(33992053, -), CAediting_401017(33992055, -), CAediting_401018(33992057, -), CAediting_401019(33992058, -), CAediting_401020(33992059, -), CAediting_401021(33992060, -), CAediting_401022(33992063, -), CAediting_401023(33992069, -), CAediting_401024(33992080, -), CAediting_401025(33992108, -), CAediting_401026(33992113, -), CAediting_401027(33992143, -), CAediting_401028(33992451, -), CAediting_401029(33992473, -), CAediting_401030(33992524, -), CAediting_401031(33992525, -), CAediting_401032(33992528, -), CAediting_401033(33992537, -), CAediting_401034(33992588, -), CAediting_401035(33992598, -), CAediting_401036(33992624, -), CAediting_401037(33992627, -), CAediting_401038(33992648, -), CAediting_401039(33992664, -), CAediting_401040(33992684, -), CAediting_401041(33992696, -), CAediting_401042(33992703, -), CAediting_401043(33992704, -), CAediting_401044(33993625, -), CAediting_401045(33993641, -), CAediting_401046(33993663, -), CAediting_401047(33993694, -), CAediting_401048(33993733, -), CAediting_401049(33993816, -), CAediting_401050(33993836, -), CAediting_401051(33994284, -), CAediting_401052(33994316, -), CAediting_401053(33994317, -), CAediting_401054(33994339, -), CAediting_401055(33994356, -), CAediting_401056(33994357, -), CAediting_401057(33994392, -), CAediting_401058(33994443, -), CAediting_401059(33994451, -), CAediting_401060(33994452, -), CAediting_401061(33994460, -), CAediting_401062(33994466, -), CAediting_401063(33996538, -), CAediting_401064(33996551, -), CAediting_401065(33996758, -),

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RNA editing positional annotations for AMACR using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_401000chr5_33987026_-UTR3
CAediting_401001chr5_33987053_-UTR3
CAediting_401002chr5_33987060_-UTR3
CAediting_401003chr5_33987089_-UTR3
CAediting_401004chr5_33987106_-UTR3
CAediting_401005chr5_33987120_-UTR3
CAediting_401006chr5_33987126_-UTR3
CAediting_401007chr5_33987139_-UTR3
CAediting_401008chr5_33987176_-UTR3
CAediting_401009chr5_33987253_-UTR3
CAediting_401010chr5_33991801_-ncRNA_intronic
CAediting_401011chr5_33992007_-ncRNA_intronic
CAediting_401012chr5_33992017_-ncRNA_intronic
CAediting_401013chr5_33992027_-ncRNA_intronic
CAediting_401014chr5_33992047_-ncRNA_intronic
CAediting_401015chr5_33992048_-ncRNA_intronic
CAediting_401016chr5_33992053_-ncRNA_intronic
CAediting_401017chr5_33992055_-ncRNA_intronic
CAediting_401018chr5_33992057_-ncRNA_intronic
CAediting_401019chr5_33992058_-ncRNA_intronic
CAediting_401020chr5_33992059_-ncRNA_intronic
CAediting_401021chr5_33992060_-ncRNA_intronic
CAediting_401022chr5_33992063_-ncRNA_intronic
CAediting_401023chr5_33992069_-ncRNA_intronic
CAediting_401024chr5_33992080_-ncRNA_intronic
CAediting_401025chr5_33992108_-ncRNA_intronic
CAediting_401026chr5_33992113_-ncRNA_intronic
CAediting_401027chr5_33992143_-ncRNA_intronic
CAediting_401028chr5_33992451_-ncRNA_intronic
CAediting_401029chr5_33992473_-ncRNA_intronic
CAediting_401030chr5_33992524_-ncRNA_intronic
CAediting_401031chr5_33992525_-ncRNA_intronic
CAediting_401032chr5_33992528_-ncRNA_intronic
CAediting_401033chr5_33992537_-ncRNA_intronic
CAediting_401034chr5_33992588_-ncRNA_intronic
CAediting_401035chr5_33992598_-ncRNA_intronic
CAediting_401036chr5_33992624_-ncRNA_intronic
CAediting_401037chr5_33992627_-ncRNA_intronic
CAediting_401038chr5_33992648_-ncRNA_intronic
CAediting_401039chr5_33992664_-ncRNA_intronic
CAediting_401040chr5_33992684_-ncRNA_intronic
CAediting_401041chr5_33992696_-ncRNA_intronic
CAediting_401042chr5_33992703_-ncRNA_intronic
CAediting_401043chr5_33992704_-ncRNA_intronic
CAediting_401044chr5_33993625_-ncRNA_intronic
CAediting_401045chr5_33993641_-ncRNA_intronic
CAediting_401046chr5_33993663_-ncRNA_intronic
CAediting_401047chr5_33993694_-ncRNA_intronic
CAediting_401048chr5_33993733_-ncRNA_intronic
CAediting_401049chr5_33993816_-ncRNA_intronic
CAediting_401050chr5_33993836_-ncRNA_intronic
CAediting_401051chr5_33994284_-ncRNA_intronic
CAediting_401052chr5_33994316_-ncRNA_intronic
CAediting_401053chr5_33994317_-ncRNA_intronic
CAediting_401054chr5_33994339_-ncRNA_intronic
CAediting_401055chr5_33994356_-ncRNA_intronic
CAediting_401056chr5_33994357_-ncRNA_intronic
CAediting_401057chr5_33994392_-ncRNA_intronic
CAediting_401058chr5_33994443_-ncRNA_intronic
CAediting_401059chr5_33994451_-ncRNA_intronic
CAediting_401060chr5_33994452_-ncRNA_intronic
CAediting_401061chr5_33994460_-ncRNA_intronic
CAediting_401062chr5_33994466_-ncRNA_intronic
CAediting_401063chr5_33996538_-ncRNA_intronic
CAediting_401064chr5_33996551_-ncRNA_intronic
CAediting_401065chr5_33996758_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_401000chr5_33987026_-SINEAluAluJr4
CAediting_401001chr5_33987053_-SINEAluAluJr4
CAediting_401002chr5_33987060_-SINEAluAluJr4
CAediting_401003chr5_33987089_-SINEAluAluJr4
CAediting_401004chr5_33987106_-SINEAluAluJr4
CAediting_401005chr5_33987120_-SINEAluAluJr4
CAediting_401006chr5_33987126_-SINEAluAluJr4
CAediting_401007chr5_33987139_-SINEAluAluJr4
CAediting_401008chr5_33987176_-SINEAluAluJr4
CAediting_401009chr5_33987253_-SINEAluAluJr4
CAediting_401010chr5_33991801_-SINEAluAluYc
CAediting_401011chr5_33992007_-SINEAluAluSx3
CAediting_401012chr5_33992017_-SINEAluAluSx3
CAediting_401013chr5_33992027_-SINEAluAluSx3
CAediting_401014chr5_33992047_-SINEAluAluSx3
CAediting_401015chr5_33992048_-SINEAluAluSx3
CAediting_401016chr5_33992053_-SINEAluAluSx3
CAediting_401017chr5_33992055_-SINEAluAluSx3
CAediting_401018chr5_33992057_-SINEAluAluSx3
CAediting_401019chr5_33992058_-SINEAluAluSx3
CAediting_401020chr5_33992059_-SINEAluAluSx3
CAediting_401021chr5_33992060_-SINEAluAluSx3
CAediting_401022chr5_33992063_-SINEAluAluSx3
CAediting_401023chr5_33992069_-SINEAluAluSx3
CAediting_401024chr5_33992080_-SINEAluAluSx3
CAediting_401025chr5_33992108_-SINEAluAluSx3
CAediting_401026chr5_33992113_-SINEAluAluSx3
CAediting_401027chr5_33992143_-SINEAluAluSx3
CAediting_401028chr5_33992451_-SINEAluAluJb
CAediting_401029chr5_33992473_-SINEAluAluJb
CAediting_401030chr5_33992524_-SINEAluAluJb
CAediting_401031chr5_33992525_-SINEAluAluJb
CAediting_401032chr5_33992528_-SINEAluAluJb
CAediting_401033chr5_33992537_-SINEAluAluJb
CAediting_401034chr5_33992588_-SINEAluAluJb
CAediting_401035chr5_33992598_-SINEAluAluJb
CAediting_401036chr5_33992624_-SINEAluAluJb
CAediting_401037chr5_33992627_-SINEAluAluJb
CAediting_401038chr5_33992648_-SINEAluAluJb
CAediting_401039chr5_33992664_-SINEAluAluJb
CAediting_401040chr5_33992684_-SINEAluAluJb
CAediting_401041chr5_33992696_-SINEAluAluJb
CAediting_401042chr5_33992703_-SINEAluAluJb
CAediting_401043chr5_33992704_-SINEAluAluJb
CAediting_401044chr5_33993625_-SINEAluAluSx1
CAediting_401045chr5_33993641_-SINEAluAluSx1
CAediting_401046chr5_33993663_-SINEAluAluSx1
CAediting_401047chr5_33993694_-SINEAluAluSx1
CAediting_401048chr5_33993733_-SINEAluAluSx1
CAediting_401049chr5_33993816_-SINEAluAluSx1
CAediting_401050chr5_33993836_-SINEAluAluSx1
CAediting_401051chr5_33994284_-SINEAluAluSz
CAediting_401052chr5_33994316_-SINEAluAluSz
CAediting_401053chr5_33994317_-SINEAluAluSz
CAediting_401054chr5_33994339_-SINEAluAluSz
CAediting_401055chr5_33994356_-SINEAluAluSz
CAediting_401056chr5_33994357_-SINEAluAluSz
CAediting_401057chr5_33994392_-SINEAluAluSz
CAediting_401058chr5_33994443_-SINEAluAluSz
CAediting_401059chr5_33994451_-SINEAluAluSz
CAediting_401060chr5_33994452_-SINEAluAluSz
CAediting_401061chr5_33994460_-SINEAluAluSz
CAediting_401062chr5_33994466_-SINEAluAluSz
CAediting_401063chr5_33996538_-SINEAluAluJr
CAediting_401064chr5_33996551_-SINEAluAluJr
CAediting_401065chr5_33996758_-SINEAluAluJr

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RNA A-to-I editing events in the alternative splicing sites for AMACR

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000242110.6.AMACR.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000242110.6.AMACR.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for AMACR

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for AMACR

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for AMACR

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_401009chr5_33987253_-ENSG00000242110.6ENST00000382072hsa-miR-328-3p33987247339872537mer-1a3398724733987268140.00-21.99
CAediting_401009chr5_33987253_-ENSG00000242110.6ENST00000382072hsa-miR-5699-5p33987250339872567mer-m83398724933987270140.00-12.57
CAediting_401009chr5_33987253_-ENSG00000242110.6ENST00000382072hsa-miR-874-5p33987248339872558mer-1a3398724833987270142.00-17.09

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_401008chr5_33987176_-ENSG00000242110.6ENST00000382072hsa-miR-126133987176339871827mer-m83398717533987193146-8.2
CAediting_401009chr5_33987253_-ENSG00000242110.6ENST00000382072hsa-miR-6878-3p33987247339872548mer-1a3398724733987269149-20.57

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000242110.6ENST00000382072hsa-miR-605-3p33987674339876818mer-1a3398767433987698145-15.15
CAediting_1160181chr17_7017644_-ENSG00000242110.6ENST00000382072hsa-miR-195-3p33989026339890327mer-m83398902533989044161-18.5
CAediting_1351755chr19_40282625_-ENSG00000242110.6ENST00000382072hsa-miR-64133988271339882766mer3398827033988292140-16.15
CAediting_1160181chr17_7017644_-ENSG00000242110.6ENST00000506639hsa-miR-195-3p33989026339890327mer-m83398902533989044161-18.5
CAediting_1351755chr19_40282625_-ENSG00000242110.6ENST00000506639hsa-miR-64133988271339882766mer3398827033988292140-16.15
CAediting_1160181chr17_7017644_-ENSG00000242110.6ENST00000502637hsa-miR-195-3p33989026339890327mer-m83398902533989044161-18.5

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_228905chr2_188297554_+ENSG00000242110.6ENST00000382072hsa-miR-561-3p33987298339873036mer3398729733987321147-11.61
CAediting_228905chr2_188297554_+ENSG00000242110.6ENST00000382072hsa-miR-561-3p33988889339888957mer-m83398888833988911148-13.32
CAediting_228905chr2_188297554_+ENSG00000242110.6ENST00000382072hsa-miR-561-3p33988598339886058mer-1a3398859833988621151-6.86
CAediting_748296chr10_51299626_+ENSG00000242110.6ENST00000382072hsa-miR-605-3p33988851339888577mer-m83398885033988871150-12.7
CAediting_228905chr2_188297554_+ENSG00000242110.6ENST00000506639hsa-miR-561-3p33988889339888957mer-m83398888833988911148-13.32
CAediting_228905chr2_188297554_+ENSG00000242110.6ENST00000506639hsa-miR-561-3p33988598339886058mer-1a3398859833988621151-6.86
CAediting_748296chr10_51299626_+ENSG00000242110.6ENST00000506639hsa-miR-605-3p33988851339888577mer-m83398885033988871150-12.7
CAediting_228905chr2_188297554_+ENSG00000242110.6ENST00000502637hsa-miR-561-3p33988889339888957mer-m83398888833988911148-13.32

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for AMACR

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000335606.9protein_codingSoverviewSoverview
ENST00000382072.5protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_401000ENST00000335606.9chr5_33987026_--1243.70-1243.30-1248.70
CAediting_401001ENST00000335606.9chr5_33987053_--1243.30-1243.30-1248.70
CAediting_401002ENST00000335606.9chr5_33987060_--1244.30-1243.30-1248.70
CAediting_401003ENST00000335606.9chr5_33987089_--1244.60-1243.30-1248.70
CAediting_401004ENST00000335606.9chr5_33987106_--1243.30-1243.30-1248.70
CAediting_401005ENST00000335606.9chr5_33987120_--1242.90-1243.30-1248.70
CAediting_401006ENST00000335606.9chr5_33987126_--1244.90-1243.30-1248.70
CAediting_401007ENST00000335606.9chr5_33987139_--1243.40-1243.30-1248.70
CAediting_401008ENST00000335606.9chr5_33987176_--1243.50-1243.30-1248.70
CAediting_401009ENST00000335606.9chr5_33987253_--1244.80-1243.30-1248.70
CAediting_401008ENST00000382072.5chr5_33987176_--873.40-874.10-874.90
CAediting_401009ENST00000382072.5chr5_33987253_--875.60-874.10-874.90

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Relation with ADAR for AMACR

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for AMACR

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for AMACR

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for AMACR

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for AMACR

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
AMACRC0033578Prostatic Neoplasms3CTD_human
AMACRC0376358Malignant neoplasm of prostate3CTD_human
AMACRC1858328Bile acid synthesis defect, congenital, 43CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
AMACRC3280428Alpha-Methylacyl-CoA Racemase Deficiency3CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
AMACRC0023893Liver Cirrhosis, Experimental2CTD_human
AMACRC0001430Adenoma1CTD_human
AMACRC0009402Colorectal Carcinoma1CTD_human
AMACRC0009404Colorectal Neoplasms1CTD_human
AMACRC0011195Dejerine-Sottas Disease (disorder)1CTD_human
AMACRC0019816Hereditary, Type VII, Motor and Sensory Neuropathy1CTD_human
AMACRC0023895Liver diseases1CTD_human
AMACRC0027888Hereditary Motor and Sensory Neuropathies1CTD_human
AMACRC0036341Schizophrenia1PSYGENET
AMACRC0086565Liver Dysfunction1CTD_human
AMACRC0205646Adenoma, Basal Cell1CTD_human
AMACRC0205647Follicular adenoma1CTD_human
AMACRC0205648Adenoma, Microcystic1CTD_human
AMACRC0205649Adenoma, Monomorphic1CTD_human
AMACRC0205650Papillary adenoma1CTD_human
AMACRC0205651Adenoma, Trabecular1CTD_human