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Editing gene: CARHSP1 (CAeditome ID:23589)

Gene summary for CARHSP1

Gene summary

Gene information	Gene symbol	CARHSP1
	Gene ID	23589
	Gene name	calcium regulated heat stable protein 1
	Synonyms	CRHSP-24\|CRHSP24\|CSDC1
	Cytomap	16p13.2
	Type of gene	protein-coding
	Description	calcium-regulated heat-stable protein 1calcium regulated heat stable protein 1, 24kDacalcium-regulated heat-stable protein (24kD)calcium-regulated heat-stable protein of 24 kDa
	Modification date	20210518
	UniProtAcc	Q9Y2V2
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
CARHSP1	GO:0003730	Calcium-regulated heat-stable protein 1	21078874

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RNA A-to-I events for CARHSP1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000153048.9

RNA A-to-I editing events in Cancer.

CAediting_1085261(8860794, -), CAediting_1085262(8860806, -), CAediting_1085263(8860807, -), CAediting_1085264(8860808, -), CAediting_1085265(8860859, -), CAediting_1085266(8860888, -), CAediting_1085267(8860926, -), CAediting_1085268(8860928, -), CAediting_1085269(8860938, -), CAediting_1085270(8860956, -), CAediting_1085271(8860964, -), CAediting_1085272(8860967, -), CAediting_1085273(8860968, -), CAediting_1085274(8861024, -), CAediting_1085275(8861028, -), CAediting_1085276(8861048, -), CAediting_1085277(8861076, -), CAediting_1085278(8861090, -), CAediting_1085279(8861094, -), CAediting_1085280(8861116, -), CAediting_1085281(8861130, -), CAediting_1085282(8861131, -), CAediting_1085283(8861135, -), CAediting_1085284(8861137, -), CAediting_1085285(8861218, -), CAediting_1085286(8861243, -), CAediting_1085287(8861246, -), CAediting_1085288(8861260, -), CAediting_1085289(8861262, -), CAediting_1085290(8861271, -), CAediting_1085291(8861272, -), CAediting_1085292(8861275, -), CAediting_1085293(8861291, -), CAediting_1085294(8861292, -), CAediting_1085295(8861300, -), CAediting_1085296(8861310, -), CAediting_1085297(8862050, -), CAediting_1085298(8862092, -), CAediting_1085299(8862095, -), CAediting_1085300(8862105, -), CAediting_1085301(8862114, -), CAediting_1085302(8862124, -), CAediting_1085303(8862131, -), CAediting_1085304(8862140, -), CAediting_1085305(8862141, -), CAediting_1085306(8862147, -), CAediting_1085307(8862167, -), CAediting_1085308(8862194, -), CAediting_1085309(8863188, -), CAediting_1085310(8863192, -), CAediting_1085311(8863214, -), CAediting_1085312(8863219, -), CAediting_1085313(8863224, -), CAediting_1085314(8863394, -), CAediting_1085315(8866046, -), CAediting_1085316(8866092, -),

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RNA editing positional annotations for CARHSP1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1085261	chr16_8860794_-	ncRNA_intronic
CAediting_1085262	chr16_8860806_-	ncRNA_intronic
CAediting_1085263	chr16_8860807_-	ncRNA_intronic
CAediting_1085264	chr16_8860808_-	ncRNA_intronic
CAediting_1085265	chr16_8860859_-	ncRNA_intronic
CAediting_1085266	chr16_8860888_-	ncRNA_intronic
CAediting_1085267	chr16_8860926_-	ncRNA_intronic
CAediting_1085268	chr16_8860928_-	ncRNA_intronic
CAediting_1085269	chr16_8860938_-	ncRNA_intronic
CAediting_1085270	chr16_8860956_-	ncRNA_intronic
CAediting_1085271	chr16_8860964_-	ncRNA_intronic
CAediting_1085272	chr16_8860967_-	ncRNA_intronic
CAediting_1085273	chr16_8860968_-	ncRNA_intronic
CAediting_1085274	chr16_8861024_-	ncRNA_intronic
CAediting_1085275	chr16_8861028_-	ncRNA_intronic
CAediting_1085276	chr16_8861048_-	ncRNA_intronic
CAediting_1085277	chr16_8861076_-	ncRNA_intronic
CAediting_1085278	chr16_8861090_-	ncRNA_intronic
CAediting_1085279	chr16_8861094_-	ncRNA_intronic
CAediting_1085280	chr16_8861116_-	ncRNA_intronic
CAediting_1085281	chr16_8861130_-	ncRNA_intronic
CAediting_1085282	chr16_8861131_-	ncRNA_intronic
CAediting_1085283	chr16_8861135_-	ncRNA_intronic
CAediting_1085284	chr16_8861137_-	ncRNA_intronic
CAediting_1085285	chr16_8861218_-	ncRNA_intronic
CAediting_1085286	chr16_8861243_-	ncRNA_intronic
CAediting_1085287	chr16_8861246_-	ncRNA_intronic
CAediting_1085288	chr16_8861260_-	ncRNA_intronic
CAediting_1085289	chr16_8861262_-	ncRNA_intronic
CAediting_1085290	chr16_8861271_-	ncRNA_intronic
CAediting_1085291	chr16_8861272_-	ncRNA_intronic
CAediting_1085292	chr16_8861275_-	ncRNA_intronic
CAediting_1085293	chr16_8861291_-	ncRNA_intronic
CAediting_1085294	chr16_8861292_-	ncRNA_intronic
CAediting_1085295	chr16_8861300_-	ncRNA_intronic
CAediting_1085296	chr16_8861310_-	ncRNA_intronic
CAediting_1085297	chr16_8862050_-	ncRNA_intronic
CAediting_1085298	chr16_8862092_-	ncRNA_intronic
CAediting_1085299	chr16_8862095_-	ncRNA_intronic
CAediting_1085300	chr16_8862105_-	ncRNA_intronic
CAediting_1085301	chr16_8862114_-	ncRNA_intronic
CAediting_1085302	chr16_8862124_-	ncRNA_intronic
CAediting_1085303	chr16_8862131_-	ncRNA_intronic
CAediting_1085304	chr16_8862140_-	ncRNA_intronic
CAediting_1085305	chr16_8862141_-	ncRNA_intronic
CAediting_1085306	chr16_8862147_-	ncRNA_intronic
CAediting_1085307	chr16_8862167_-	ncRNA_intronic
CAediting_1085308	chr16_8862194_-	ncRNA_intronic
CAediting_1085309	chr16_8863188_-	ncRNA_intronic
CAediting_1085310	chr16_8863192_-	ncRNA_intronic
CAediting_1085311	chr16_8863214_-	ncRNA_intronic
CAediting_1085312	chr16_8863219_-	ncRNA_intronic
CAediting_1085313	chr16_8863224_-	ncRNA_intronic
CAediting_1085314	chr16_8863394_-	ncRNA_intronic
CAediting_1085315	chr16_8866046_-	ncRNA_intronic
CAediting_1085316	chr16_8866092_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1085261	chr16_8860794_-	SINE	Alu	AluSx1
CAediting_1085262	chr16_8860806_-	SINE	Alu	AluSx1
CAediting_1085263	chr16_8860807_-	SINE	Alu	AluSx1
CAediting_1085264	chr16_8860808_-	SINE	Alu	AluSx1
CAediting_1085265	chr16_8860859_-	SINE	Alu	AluSx1
CAediting_1085266	chr16_8860888_-	SINE	Alu	AluSx1
CAediting_1085267	chr16_8860926_-	SINE	Alu	AluSx1
CAediting_1085268	chr16_8860928_-	SINE	Alu	AluSx1
CAediting_1085269	chr16_8860938_-	SINE	Alu	AluSx1
CAediting_1085270	chr16_8860956_-	SINE	Alu	AluSx1
CAediting_1085271	chr16_8860964_-	SINE	Alu	AluSx1
CAediting_1085272	chr16_8860967_-	SINE	Alu	AluSx1
CAediting_1085273	chr16_8860968_-	SINE	Alu	AluSx1
CAediting_1085274	chr16_8861024_-	SINE	Alu	AluSx1
CAediting_1085275	chr16_8861028_-	SINE	Alu	AluSx1
CAediting_1085276	chr16_8861048_-	SINE	Alu	AluSx1
CAediting_1085277	chr16_8861076_-	SINE	Alu	AluJb
CAediting_1085278	chr16_8861090_-	SINE	Alu	AluJb
CAediting_1085279	chr16_8861094_-	SINE	Alu	AluJb
CAediting_1085280	chr16_8861116_-	SINE	Alu	AluJb
CAediting_1085281	chr16_8861130_-	SINE	Alu	AluJb
CAediting_1085282	chr16_8861131_-	SINE	Alu	AluJb
CAediting_1085283	chr16_8861135_-	SINE	Alu	AluJb
CAediting_1085284	chr16_8861137_-	SINE	Alu	AluJb
CAediting_1085285	chr16_8861218_-	SINE	Alu	AluJb
CAediting_1085286	chr16_8861243_-	SINE	Alu	AluJb
CAediting_1085287	chr16_8861246_-	SINE	Alu	AluJb
CAediting_1085288	chr16_8861260_-	SINE	Alu	AluJb
CAediting_1085289	chr16_8861262_-	SINE	Alu	AluJb
CAediting_1085290	chr16_8861271_-	SINE	Alu	AluJb
CAediting_1085291	chr16_8861272_-	SINE	Alu	AluJb
CAediting_1085292	chr16_8861275_-	SINE	Alu	AluJb
CAediting_1085293	chr16_8861291_-	SINE	Alu	AluJb
CAediting_1085294	chr16_8861292_-	SINE	Alu	AluJb
CAediting_1085295	chr16_8861300_-	SINE	Alu	AluJb
CAediting_1085296	chr16_8861310_-	SINE	Alu	AluJb
CAediting_1085297	chr16_8862050_-	SINE	Alu	AluSx1
CAediting_1085298	chr16_8862092_-	SINE	Alu	AluSx1
CAediting_1085299	chr16_8862095_-	SINE	Alu	AluSx1
CAediting_1085300	chr16_8862105_-	SINE	Alu	AluSx1
CAediting_1085301	chr16_8862114_-	SINE	Alu	AluSx1
CAediting_1085302	chr16_8862124_-	SINE	Alu	AluSx1
CAediting_1085303	chr16_8862131_-	SINE	Alu	AluSx1
CAediting_1085304	chr16_8862140_-	SINE	Alu	AluSx1
CAediting_1085305	chr16_8862141_-	SINE	Alu	AluSx1
CAediting_1085306	chr16_8862147_-	SINE	Alu	AluSx1
CAediting_1085307	chr16_8862167_-	SINE	Alu	AluSx1
CAediting_1085308	chr16_8862194_-	SINE	MIR	MIR
CAediting_1085309	chr16_8863188_-	SINE	Alu	AluJb
CAediting_1085310	chr16_8863192_-	SINE	Alu	AluJb
CAediting_1085311	chr16_8863214_-	SINE	Alu	AluJb
CAediting_1085312	chr16_8863219_-	SINE	Alu	AluJb
CAediting_1085313	chr16_8863224_-	SINE	Alu	AluJb
CAediting_1085314	chr16_8863394_-	SINE	Alu	AluJb
CAediting_1085315	chr16_8866046_-	SINE	Alu	AluJo
CAediting_1085316	chr16_8866092_-	SINE	Alu	AluJo

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RNA A-to-I editing events in the alternative splicing sites for CARHSP1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1085308	chr16_8862194_-	8862190:8862198	5SS	0+2i	GGGTAGGAT	-21.45	GGGTGGGAT	-20.92
MEX_2	CAediting_1085308	chr16_8862194_-	8862190:8862198	5SS	0+2i	GGGTAGGAT	-21.45	GGGTGGGAT	-20.92

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000153048.9.CARHSP1.

Correlation between RNA A-to-I editing and PSI for ENSG00000153048.9.CARHSP1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CARHSP1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

ESCA.CAediting_1085268.ENSG00000153048.CARHSP1.png
Soverview

ESCA.CAediting_1085281.ENSG00000153048.CARHSP1.png
Soverview

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Protein coding region RNA A-to-I editings for CARHSP1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for CARHSP1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000396593	hsa-miR-605-3p	8854010	8854016	7mer-m8	8854009	8854026	141	-14.53
CAediting_688080	chr9_63819626_+	ENSG00000153048.9	ENST00000396593	hsa-miR-4477b	8853550	8853556	7mer-m8	8853549	8853573	148	-15.05
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000610831	hsa-miR-605-3p	8854010	8854016	7mer-m8	8854009	8854026	141	-14.53
CAediting_688080	chr9_63819626_+	ENSG00000153048.9	ENST00000610831	hsa-miR-4477b	8853550	8853556	7mer-m8	8853549	8853573	148	-15.05
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000614449	hsa-miR-605-3p	8854010	8854016	7mer-m8	8854009	8854026	141	-14.53
CAediting_688080	chr9_63819626_+	ENSG00000153048.9	ENST00000614449	hsa-miR-4477b	8853550	8853556	7mer-m8	8853549	8853573	148	-15.05
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000619881	hsa-miR-605-3p	8854010	8854016	7mer-m8	8854009	8854026	141	-14.53
CAediting_688080	chr9_63819626_+	ENSG00000153048.9	ENST00000619881	hsa-miR-4477b	8853550	8853556	7mer-m8	8853549	8853573	148	-15.05
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000618335	hsa-miR-605-3p	8854010	8854016	7mer-m8	8854009	8854026	141	-14.53
CAediting_688080	chr9_63819626_+	ENSG00000153048.9	ENST00000618335	hsa-miR-4477b	8853550	8853556	7mer-m8	8853549	8853573	148	-15.05
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000611932	hsa-miR-605-3p	8854010	8854016	7mer-m8	8854009	8854026	141	-14.53
CAediting_688080	chr9_63819626_+	ENSG00000153048.9	ENST00000611932	hsa-miR-4477b	8853550	8853556	7mer-m8	8853549	8853573	148	-15.05
CAediting_1054808	chr15_66496985_-	ENSG00000153048.9	ENST00000396593	hsa-miR-4512	8854778	8854785	8mer-1a	8854778	8854798	148	-21.79
CAediting_1229414	chr17_67471546_+	ENSG00000153048.9	ENST00000396593	hsa-miR-548aa	8853884	8853890	7mer-m8	8853883	8853907	140	-16.16
CAediting_1229415	chr17_67471547_+	ENSG00000153048.9	ENST00000396593	hsa-miR-548aa	8853619	8853625	7mer-m8	8853618	8853646	144	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000153048.9	ENST00000396593	hsa-miR-195-3p	8854104	8854109	6mer	8854103	8854124	143	-18.86
CAediting_77128	chr1_85133844_+	ENSG00000153048.9	ENST00000396593	hsa-miR-4423-3p	8854903	8854909	7mer-m8	8854902	8854922	145	-16.18
CAediting_442554	chr5_154685830_+	ENSG00000153048.9	ENST00000396593	hsa-miR-1303	8854722	8854728	7mer-m8	8854721	8854739	147	-17.52
CAediting_1054808	chr15_66496985_-	ENSG00000153048.9	ENST00000610831	hsa-miR-4512	8854778	8854785	8mer-1a	8854778	8854798	148	-21.79
CAediting_1229414	chr17_67471546_+	ENSG00000153048.9	ENST00000610831	hsa-miR-548aa	8853884	8853890	7mer-m8	8853883	8853907	140	-16.16
CAediting_1229415	chr17_67471547_+	ENSG00000153048.9	ENST00000610831	hsa-miR-548aa	8853619	8853625	7mer-m8	8853618	8853646	144	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000153048.9	ENST00000610831	hsa-miR-195-3p	8854104	8854109	6mer	8854103	8854124	143	-18.86
CAediting_77128	chr1_85133844_+	ENSG00000153048.9	ENST00000610831	hsa-miR-4423-3p	8854903	8854909	7mer-m8	8854902	8854922	145	-16.18
CAediting_442554	chr5_154685830_+	ENSG00000153048.9	ENST00000610831	hsa-miR-1303	8854722	8854728	7mer-m8	8854721	8854739	147	-17.52
CAediting_1054808	chr15_66496985_-	ENSG00000153048.9	ENST00000614449	hsa-miR-4512	8854778	8854785	8mer-1a	8854778	8854798	148	-21.79
CAediting_1229414	chr17_67471546_+	ENSG00000153048.9	ENST00000614449	hsa-miR-548aa	8853884	8853890	7mer-m8	8853883	8853907	140	-16.16
CAediting_1229415	chr17_67471547_+	ENSG00000153048.9	ENST00000614449	hsa-miR-548aa	8853619	8853625	7mer-m8	8853618	8853646	144	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000153048.9	ENST00000614449	hsa-miR-195-3p	8854104	8854109	6mer	8854103	8854124	143	-18.86
CAediting_77128	chr1_85133844_+	ENSG00000153048.9	ENST00000614449	hsa-miR-4423-3p	8854903	8854909	7mer-m8	8854902	8854922	145	-16.18
CAediting_442554	chr5_154685830_+	ENSG00000153048.9	ENST00000614449	hsa-miR-1303	8854722	8854728	7mer-m8	8854721	8854739	147	-17.52
CAediting_1054808	chr15_66496985_-	ENSG00000153048.9	ENST00000619881	hsa-miR-4512	8854778	8854785	8mer-1a	8854778	8854798	148	-21.79
CAediting_1229414	chr17_67471546_+	ENSG00000153048.9	ENST00000619881	hsa-miR-548aa	8853884	8853890	7mer-m8	8853883	8853907	140	-16.16
CAediting_1229415	chr17_67471547_+	ENSG00000153048.9	ENST00000619881	hsa-miR-548aa	8853619	8853625	7mer-m8	8853618	8853646	144	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000153048.9	ENST00000619881	hsa-miR-195-3p	8854104	8854109	6mer	8854103	8854124	143	-18.86
CAediting_77128	chr1_85133844_+	ENSG00000153048.9	ENST00000619881	hsa-miR-4423-3p	8854903	8854909	7mer-m8	8854902	8854922	145	-16.18
CAediting_442554	chr5_154685830_+	ENSG00000153048.9	ENST00000619881	hsa-miR-1303	8854722	8854728	7mer-m8	8854721	8854739	147	-17.52
CAediting_1054808	chr15_66496985_-	ENSG00000153048.9	ENST00000618335	hsa-miR-4512	8854778	8854785	8mer-1a	8854778	8854798	148	-21.79
CAediting_1229414	chr17_67471546_+	ENSG00000153048.9	ENST00000618335	hsa-miR-548aa	8853884	8853890	7mer-m8	8853883	8853907	140	-16.16
CAediting_1229415	chr17_67471547_+	ENSG00000153048.9	ENST00000618335	hsa-miR-548aa	8853619	8853625	7mer-m8	8853618	8853646	144	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000153048.9	ENST00000618335	hsa-miR-195-3p	8854104	8854109	6mer	8854103	8854124	143	-18.86
CAediting_77128	chr1_85133844_+	ENSG00000153048.9	ENST00000618335	hsa-miR-4423-3p	8854903	8854909	7mer-m8	8854902	8854922	145	-16.18
CAediting_442554	chr5_154685830_+	ENSG00000153048.9	ENST00000618335	hsa-miR-1303	8854722	8854728	7mer-m8	8854721	8854739	147	-17.52
CAediting_1054808	chr15_66496985_-	ENSG00000153048.9	ENST00000611932	hsa-miR-4512	8854778	8854785	8mer-1a	8854778	8854798	148	-21.79
CAediting_1229414	chr17_67471546_+	ENSG00000153048.9	ENST00000611932	hsa-miR-548aa	8853884	8853890	7mer-m8	8853883	8853907	140	-16.16
CAediting_1229415	chr17_67471547_+	ENSG00000153048.9	ENST00000611932	hsa-miR-548aa	8853619	8853625	7mer-m8	8853618	8853646	144	-13.93
CAediting_1160181	chr17_7017644_-	ENSG00000153048.9	ENST00000611932	hsa-miR-195-3p	8854104	8854109	6mer	8854103	8854124	143	-18.86
CAediting_77128	chr1_85133844_+	ENSG00000153048.9	ENST00000611932	hsa-miR-4423-3p	8854903	8854909	7mer-m8	8854902	8854922	145	-16.18
CAediting_442554	chr5_154685830_+	ENSG00000153048.9	ENST00000611932	hsa-miR-1303	8854722	8854728	7mer-m8	8854721	8854739	147	-17.52
CAediting_573001	chr7_92204086_-	ENSG00000153048.9	ENST00000562843	hsa-miR-1285-5p	8858163	8858169	7mer-m8	8858162	8858183	146	-21.44

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_604450	chr7_133034877_-	ENSG00000153048.9	ENST00000396593	hsa-miR-3654	8853596	8853602	7mer-m8	8853595	8853613	140	-15.98
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000396593	hsa-miR-561-3p	8854096	8854102	7mer-m8	8854095	8854116	145	-6.04
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000396593	hsa-miR-561-3p	8853794	8853800	7mer-m8	8853793	8853815	141	-6.61
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000396593	hsa-miR-561-3p	8854310	8854316	7mer-m8	8854309	8854330	143	-9.4
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000396593	hsa-miR-605-3p	8853364	8853370	7mer-m8	8853363	8853384	140	-14.12
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000396593	hsa-miR-605-3p	8854431	8854437	7mer-m8	8854430	8854450	154	-16.59
CAediting_604450	chr7_133034877_-	ENSG00000153048.9	ENST00000610831	hsa-miR-3654	8853596	8853602	7mer-m8	8853595	8853613	140	-15.98
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000610831	hsa-miR-561-3p	8854096	8854102	7mer-m8	8854095	8854116	145	-6.04
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000610831	hsa-miR-561-3p	8853794	8853800	7mer-m8	8853793	8853815	141	-6.61
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000610831	hsa-miR-561-3p	8854310	8854316	7mer-m8	8854309	8854330	143	-9.4
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000610831	hsa-miR-605-3p	8853364	8853370	7mer-m8	8853363	8853384	140	-14.12
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000610831	hsa-miR-605-3p	8854431	8854437	7mer-m8	8854430	8854450	154	-16.59
CAediting_604450	chr7_133034877_-	ENSG00000153048.9	ENST00000614449	hsa-miR-3654	8853596	8853602	7mer-m8	8853595	8853613	140	-15.98
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000614449	hsa-miR-561-3p	8854096	8854102	7mer-m8	8854095	8854116	145	-6.04
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000614449	hsa-miR-561-3p	8853794	8853800	7mer-m8	8853793	8853815	141	-6.61
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000614449	hsa-miR-561-3p	8854310	8854316	7mer-m8	8854309	8854330	143	-9.4
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000614449	hsa-miR-605-3p	8853364	8853370	7mer-m8	8853363	8853384	140	-14.12
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000614449	hsa-miR-605-3p	8854431	8854437	7mer-m8	8854430	8854450	154	-16.59
CAediting_604450	chr7_133034877_-	ENSG00000153048.9	ENST00000619881	hsa-miR-3654	8853596	8853602	7mer-m8	8853595	8853613	140	-15.98
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000619881	hsa-miR-561-3p	8854096	8854102	7mer-m8	8854095	8854116	145	-6.04
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000619881	hsa-miR-561-3p	8853794	8853800	7mer-m8	8853793	8853815	141	-6.61
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000619881	hsa-miR-561-3p	8854310	8854316	7mer-m8	8854309	8854330	143	-9.4
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000619881	hsa-miR-605-3p	8853364	8853370	7mer-m8	8853363	8853384	140	-14.12
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000619881	hsa-miR-605-3p	8854431	8854437	7mer-m8	8854430	8854450	154	-16.59
CAediting_604450	chr7_133034877_-	ENSG00000153048.9	ENST00000618335	hsa-miR-3654	8853596	8853602	7mer-m8	8853595	8853613	140	-15.98
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000618335	hsa-miR-561-3p	8854096	8854102	7mer-m8	8854095	8854116	145	-6.04
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000618335	hsa-miR-561-3p	8853794	8853800	7mer-m8	8853793	8853815	141	-6.61
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000618335	hsa-miR-561-3p	8854310	8854316	7mer-m8	8854309	8854330	143	-9.4
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000618335	hsa-miR-605-3p	8853364	8853370	7mer-m8	8853363	8853384	140	-14.12
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000618335	hsa-miR-605-3p	8854431	8854437	7mer-m8	8854430	8854450	154	-16.59
CAediting_604450	chr7_133034877_-	ENSG00000153048.9	ENST00000611932	hsa-miR-3654	8853596	8853602	7mer-m8	8853595	8853613	140	-15.98
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000611932	hsa-miR-561-3p	8854096	8854102	7mer-m8	8854095	8854116	145	-6.04
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000611932	hsa-miR-561-3p	8853794	8853800	7mer-m8	8853793	8853815	141	-6.61
CAediting_228905	chr2_188297554_+	ENSG00000153048.9	ENST00000611932	hsa-miR-561-3p	8854310	8854316	7mer-m8	8854309	8854330	143	-9.4
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000611932	hsa-miR-605-3p	8853364	8853370	7mer-m8	8853363	8853384	140	-14.12
CAediting_748296	chr10_51299626_+	ENSG00000153048.9	ENST00000611932	hsa-miR-605-3p	8854431	8854437	7mer-m8	8854430	8854450	154	-16.59

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CARHSP1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for CARHSP1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for CARHSP1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for CARHSP1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for CARHSP1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for CARHSP1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene