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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CHST5 (CAeditome ID:23563)

Gene summary for CHST5

check button Gene summary
Gene informationGene symbol

CHST5

Gene ID

23563

Gene namecarbohydrate sulfotransferase 5
SynonymsI-GlcNAc-6-ST|I-GlcNAc6ST|glcNAc6ST-3|gn6st-3|hIGn6ST
Cytomap

16q23.1

Type of geneprotein-coding
Descriptioncarbohydrate sulfotransferase 5GST4-alphaN-acetylglucosamine 6-O-sulfotransferase 3carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 5galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 4-alphaintestinal GlcNAc-6-sulfotransfe
Modification date20210518
UniProtAcc

Q9GZS9

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CHST5

GO:0001517

Carbohydrate sulfotransferase 5

10491328

CHST5

GO:0006044

Carbohydrate sulfotransferase 5

10491328

CHST5

GO:0006044

Carbohydrate sulfotransferase 5

12218059

CHST5

GO:0006790

Carbohydrate sulfotransferase 5

10491328

CHST5

GO:0005794

Carbohydrate sulfotransferase 5

12855678


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RNA A-to-I events for CHST5

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000135702.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1135996(75528577, -), CAediting_1135997(75528621, -), CAediting_1135998(75528624, -), CAediting_1135999(75528637, -), CAediting_1136000(75528639, -), CAediting_1136001(75528650, -), CAediting_1136002(75528654, -), CAediting_1136003(75528672, -), CAediting_1136004(75528676, -), CAediting_1136005(75528680, -), CAediting_1136006(75528685, -), CAediting_1136007(75528686, -), CAediting_1136008(75528712, -), CAediting_1136009(75528716, -), CAediting_1136010(75528717, -), CAediting_1136011(75528723, -), CAediting_1136012(75528724, -), CAediting_1136013(75528725, -), CAediting_1136014(75528726, -), CAediting_1136015(75528727, -), CAediting_1136016(75528730, -), CAediting_1136017(75528741, -), CAediting_1136018(75528747, -), CAediting_1136019(75528751, -), CAediting_1136020(75528752, -), CAediting_1136021(75528765, -), CAediting_1136022(75528780, -), CAediting_1136023(75528815, -), CAediting_1136024(75528820, -), CAediting_1136025(75528821, -), CAediting_1136026(75528829, -), CAediting_1136027(75531066, -), CAediting_1136028(75531129, -), CAediting_1136029(75531133, -), CAediting_1136030(75531141, -), CAediting_1136031(75531155, -), CAediting_1136032(75531158, -), CAediting_1136033(75531173, -), CAediting_1136034(75531174, -), CAediting_1136035(75531198, -), CAediting_1136036(75531200, -), CAediting_1136037(75531210, -), CAediting_1136038(75531222, -), CAediting_1136039(75531265, -), CAediting_1136040(75531270, -), CAediting_1136041(75531275, -), CAediting_1136042(75531276, -), CAediting_1136043(75531284, -), CAediting_1136044(75531307, -), CAediting_1136045(75532881, -), CAediting_1136046(75533666, -), CAediting_1136047(75533755, -), CAediting_1136048(75533776, -), CAediting_1136049(75533796, -), CAediting_1136050(75533797, -), CAediting_1136051(75534740, -),

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RNA editing positional annotations for CHST5 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1135996chr16_75528577_-UTR3
CAediting_1135997chr16_75528621_-UTR3
CAediting_1135998chr16_75528624_-UTR3
CAediting_1135999chr16_75528637_-UTR3
CAediting_1136000chr16_75528639_-UTR3
CAediting_1136001chr16_75528650_-UTR3
CAediting_1136002chr16_75528654_-UTR3
CAediting_1136003chr16_75528672_-UTR3
CAediting_1136004chr16_75528676_-UTR3
CAediting_1136005chr16_75528680_-UTR3
CAediting_1136006chr16_75528685_-UTR3
CAediting_1136007chr16_75528686_-UTR3
CAediting_1136008chr16_75528712_-UTR3
CAediting_1136009chr16_75528716_-UTR3
CAediting_1136010chr16_75528717_-UTR3
CAediting_1136011chr16_75528723_-UTR3
CAediting_1136012chr16_75528724_-UTR3
CAediting_1136013chr16_75528725_-UTR3
CAediting_1136014chr16_75528726_-UTR3
CAediting_1136015chr16_75528727_-UTR3
CAediting_1136016chr16_75528730_-UTR3
CAediting_1136017chr16_75528741_-UTR3
CAediting_1136018chr16_75528747_-UTR3
CAediting_1136019chr16_75528751_-UTR3
CAediting_1136020chr16_75528752_-UTR3
CAediting_1136021chr16_75528765_-UTR3
CAediting_1136022chr16_75528780_-UTR3
CAediting_1136023chr16_75528815_-UTR3
CAediting_1136024chr16_75528820_-UTR3
CAediting_1136025chr16_75528821_-UTR3
CAediting_1136026chr16_75528829_-UTR3
CAediting_1136027chr16_75531066_-UTR5
CAediting_1136028chr16_75531129_-UTR5
CAediting_1136029chr16_75531133_-UTR5
CAediting_1136030chr16_75531141_-UTR5
CAediting_1136031chr16_75531155_-UTR5
CAediting_1136032chr16_75531158_-UTR5
CAediting_1136033chr16_75531173_-UTR5
CAediting_1136034chr16_75531174_-UTR5
CAediting_1136035chr16_75531198_-UTR5
CAediting_1136036chr16_75531200_-UTR5
CAediting_1136037chr16_75531210_-UTR5
CAediting_1136038chr16_75531222_-UTR5
CAediting_1136039chr16_75531265_-UTR5
CAediting_1136040chr16_75531270_-UTR5
CAediting_1136041chr16_75531275_-UTR5
CAediting_1136042chr16_75531276_-UTR5
CAediting_1136043chr16_75531284_-UTR5
CAediting_1136044chr16_75531307_-UTR5
CAediting_1136045chr16_75532881_-intronic
CAediting_1136046chr16_75533666_-intronic
CAediting_1136047chr16_75533755_-intronic
CAediting_1136048chr16_75533776_-intronic
CAediting_1136049chr16_75533796_-intronic
CAediting_1136050chr16_75533797_-intronic
CAediting_1136051chr16_75534740_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1135996chr16_75528577_-SINEAluAluSx
CAediting_1135997chr16_75528621_-SINEAluAluSx
CAediting_1135998chr16_75528624_-SINEAluAluSx
CAediting_1135999chr16_75528637_-SINEAluAluSx
CAediting_1136000chr16_75528639_-SINEAluAluSx
CAediting_1136001chr16_75528650_-SINEAluAluSx
CAediting_1136002chr16_75528654_-SINEAluAluSx
CAediting_1136003chr16_75528672_-SINEAluAluSx
CAediting_1136004chr16_75528676_-SINEAluAluSx
CAediting_1136005chr16_75528680_-SINEAluAluSx
CAediting_1136006chr16_75528685_-SINEAluAluSx
CAediting_1136007chr16_75528686_-SINEAluAluSx
CAediting_1136008chr16_75528712_-SINEAluAluSx
CAediting_1136009chr16_75528716_-SINEAluAluSx
CAediting_1136010chr16_75528717_-SINEAluAluSx
CAediting_1136011chr16_75528723_-SINEAluAluSx
CAediting_1136012chr16_75528724_-SINEAluAluSx
CAediting_1136013chr16_75528725_-SINEAluAluSx
CAediting_1136014chr16_75528726_-SINEAluAluSx
CAediting_1136015chr16_75528727_-SINEAluAluSx
CAediting_1136016chr16_75528730_-SINEAluAluSx
CAediting_1136017chr16_75528741_-SINEAluAluSx
CAediting_1136018chr16_75528747_-SINEAluAluSx
CAediting_1136019chr16_75528751_-SINEAluAluSx
CAediting_1136020chr16_75528752_-SINEAluAluSx
CAediting_1136021chr16_75528765_-SINEAluAluSx
CAediting_1136022chr16_75528780_-SINEAluAluSx
CAediting_1136023chr16_75528815_-SINEAluAluSx
CAediting_1136024chr16_75528820_-SINEAluAluSx
CAediting_1136025chr16_75528821_-SINEAluAluSx
CAediting_1136026chr16_75528829_-SINEAluAluSx
CAediting_1136027chr16_75531066_-SINEAluAluY
CAediting_1136028chr16_75531129_-SINEAluAluY
CAediting_1136029chr16_75531133_-SINEAluAluY
CAediting_1136030chr16_75531141_-SINEAluAluY
CAediting_1136031chr16_75531155_-SINEAluAluY
CAediting_1136032chr16_75531158_-SINEAluAluY
CAediting_1136033chr16_75531173_-SINEAluAluY
CAediting_1136034chr16_75531174_-SINEAluAluY
CAediting_1136035chr16_75531198_-SINEAluAluY
CAediting_1136036chr16_75531200_-SINEAluAluY
CAediting_1136037chr16_75531210_-SINEAluAluY
CAediting_1136038chr16_75531222_-SINEAluAluY
CAediting_1136039chr16_75531265_-SINEAluAluY
CAediting_1136040chr16_75531270_-SINEAluAluY
CAediting_1136041chr16_75531275_-SINEAluAluY
CAediting_1136042chr16_75531276_-SINEAluAluY
CAediting_1136043chr16_75531284_-SINEAluAluY
CAediting_1136044chr16_75531307_-SINEAluAluY
CAediting_1136046chr16_75533666_-SINEAluAlu
CAediting_1136048chr16_75533776_-SINEAluAluSq2
CAediting_1136049chr16_75533796_-SINEAluAluSq2
CAediting_1136050chr16_75533797_-SINEAluAluSq2

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RNA A-to-I editing events in the alternative splicing sites for CHST5

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000135702.13.CHST5.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000135702.13.CHST5.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CHST5

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for CHST5

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CHST5

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1135997chr16_75528621_-ENSG00000135702.13ENST00000336257hsa-miR-1304-3p75528619755286257mer-m87552861875528639171.00-30.36
CAediting_1136015chr16_75528727_-ENSG00000135702.13ENST00000336257hsa-miR-222-5p75528725755287328mer-1a7552872575528746146.00-9.79
CAediting_1136015chr16_75528727_-ENSG00000135702.13ENST00000336257hsa-miR-30a-3p75528723755287308mer-1a7552872375528747146.00-11.02
CAediting_1136015chr16_75528727_-ENSG00000135702.13ENST00000336257hsa-miR-30d-3p75528723755287308mer-1a7552872375528749146.00-12.12
CAediting_1136015chr16_75528727_-ENSG00000135702.13ENST00000336257hsa-miR-30e-3p75528723755287308mer-1a7552872375528747146.00-11.02
CAediting_1135999chr16_75528637_-ENSG00000135702.13ENST00000336257hsa-miR-331-3p75528635755286417mer-m87552863475528655144.00-22.83
CAediting_1135999chr16_75528637_-ENSG00000135702.13ENST00000336257hsa-miR-425475528637755286437mer-m87552863675528659142.00-21.74
CAediting_1135999chr16_75528637_-ENSG00000135702.13ENST00000336257hsa-miR-430875528636755286427mer-m87552863575528652152.00-21.39
CAediting_1136003chr16_75528672_-ENSG00000135702.13ENST00000336257hsa-miR-150-5p75528668755286747mer-m87552866775528688140.00-13.49
CAediting_1136003chr16_75528672_-ENSG00000135702.13ENST00000336257hsa-miR-569775528672755286787mer-m87552867175528693149.00-17.81
CAediting_1136006chr16_75528685_-ENSG00000135702.13ENST00000336257hsa-miR-805275528680755286867mer-1a7552868075528700141.00-21.41
CAediting_1136007chr16_75528686_-ENSG00000135702.13ENST00000336257hsa-miR-513a-5p75528685755286917mer-m87552868475528701156.00-24.46
CAediting_1136007chr16_75528686_-ENSG00000135702.13ENST00000336257hsa-miR-513a-5p75528685755286917mer-m87552868475528701156.00-24.46
CAediting_1136007chr16_75528686_-ENSG00000135702.13ENST00000336257hsa-miR-63875528680755286867mer-1a7552868075528704159.00-32.33
CAediting_1136011chr16_75528723_-ENSG00000135702.13ENST00000336257hsa-miR-432575528718755287258mer-1a7552871875528735143.00-12.13
CAediting_1136014chr16_75528726_-ENSG00000135702.13ENST00000336257hsa-miR-32575528725755287328mer-1a7552872575528747141.00-9.82
CAediting_1136016chr16_75528730_-ENSG00000135702.13ENST00000336257hsa-miR-374b-3p75528725755287328mer-1a7552872575528747143.00-11.75
CAediting_1136017chr16_75528741_-ENSG00000135702.13ENST00000336257hsa-miR-6837-3p75528741755287477mer-m87552874075528762151.00-19.43
CAediting_1136017chr16_75528741_-ENSG00000135702.13ENST00000336257hsa-miR-6846-5p75528736755287427mer-m87552873575528756147.00-20.32
CAediting_1136017chr16_75528741_-ENSG00000135702.13ENST00000336257hsa-miR-6848-5p75528736755287427mer-m87552873575528761151.00-29.84
CAediting_1136018chr16_75528747_-ENSG00000135702.13ENST00000336257hsa-miR-4716-5p75528746755287527mer-m87552874575528766140.00-11.30
CAediting_1136019chr16_75528751_-ENSG00000135702.13ENST00000336257hsa-miR-3190-5p75528751755287577mer-m87552875075528769147.00-17.16
CAediting_1136021chr16_75528765_-ENSG00000135702.13ENST00000336257hsa-miR-3663-5p75528760755287667mer-m87552875975528778148.00-21.98
CAediting_1136021chr16_75528765_-ENSG00000135702.13ENST00000336257hsa-miR-6843-3p75528761755287677mer-m87552876075528779152.00-19.47
CAediting_1136021chr16_75528765_-ENSG00000135702.13ENST00000336257hsa-miR-6848-3p75528761755287677mer-m87552876075528777142.00-14.30
CAediting_1136022chr16_75528780_-ENSG00000135702.13ENST00000336257hsa-miR-4726-3p75528779755287857mer-m87552877875528801153.00-25.99
CAediting_1136024chr16_75528820_-ENSG00000135702.13ENST00000336257hsa-miR-805275528815755288217mer-1a7552881575528833148.00-29.06
CAediting_1136025chr16_75528821_-ENSG00000135702.13ENST00000336257hsa-miR-513a-5p75528820755288267mer-m87552881975528836152.00-17.32
CAediting_1136025chr16_75528821_-ENSG00000135702.13ENST00000336257hsa-miR-513a-5p75528820755288267mer-m87552881975528836152.00-17.32
CAediting_1136025chr16_75528821_-ENSG00000135702.13ENST00000336257hsa-miR-63875528815755288217mer-1a7552881575528839155.00-34.17
CAediting_1136026chr16_75528829_-ENSG00000135702.13ENST00000336257hsa-miR-3622a-5p75528824755288307mer-m87552882375528846147.00-30.07
CAediting_1135996chr16_75528577_-ENSG00000135702.13ENST00000336257hsa-miR-6838-3p75528573755285797mer-m87552857275528590164.00-24.17
CAediting_1136002chr16_75528654_-ENSG00000135702.13ENST00000336257hsa-miR-6749-3p75528653755286597mer-m87552865275528671150.00-23.29
CAediting_1136004chr16_75528676_-ENSG00000135702.13ENST00000336257hsa-miR-1207-3p75528676755286827mer-m87552867575528692140.00-12.56
CAediting_1136004chr16_75528676_-ENSG00000135702.13ENST00000336257hsa-miR-64675528674755286807mer-m87552867375528691145.00-16.24
CAediting_1136004chr16_75528676_-ENSG00000135702.13ENST00000336257hsa-miR-6792-5p75528672755286787mer-m87552867175528694145.00-16.66

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1136024chr16_75528820_-ENSG00000135702.13ENST00000336257hsa-miR-10399-5p75528819755288257mer-m87552881875528839144-11.88
CAediting_1136025chr16_75528821_-ENSG00000135702.13ENST00000336257hsa-miR-10399-5p75528819755288257mer-m87552881875528839144-11.88
CAediting_1136009chr16_75528716_-ENSG00000135702.13ENST00000336257hsa-miR-129-5p75528715755287217mer-m87552871475528734148-8.17
CAediting_1136010chr16_75528717_-ENSG00000135702.13ENST00000336257hsa-miR-129-5p75528715755287217mer-m87552871475528734148-8.17
CAediting_1136009chr16_75528716_-ENSG00000135702.13ENST00000336257hsa-miR-129-5p75528715755287217mer-m87552871475528734148-8.17
CAediting_1136010chr16_75528717_-ENSG00000135702.13ENST00000336257hsa-miR-129-5p75528715755287217mer-m87552871475528734148-8.17
CAediting_1136011chr16_75528723_-ENSG00000135702.13ENST00000336257hsa-miR-153-5p75528721755287277mer-m87552872075528742142-6.67
CAediting_1136012chr16_75528724_-ENSG00000135702.13ENST00000336257hsa-miR-153-5p75528721755287277mer-m87552872075528742142-6.67
CAediting_1136013chr16_75528725_-ENSG00000135702.13ENST00000336257hsa-miR-153-5p75528721755287277mer-m87552872075528742142-6.67
CAediting_1136014chr16_75528726_-ENSG00000135702.13ENST00000336257hsa-miR-153-5p75528721755287277mer-m87552872075528742142-6.67
CAediting_1136017chr16_75528741_-ENSG00000135702.13ENST00000336257hsa-miR-193b-5p75528737755287437mer-m87552873675528757142-15.26
CAediting_1136021chr16_75528765_-ENSG00000135702.13ENST00000336257hsa-miR-29b-1-5p75528760755287667mer-m87552875975528783152-20.25
CAediting_1136021chr16_75528765_-ENSG00000135702.13ENST00000336257hsa-miR-29b-2-5p75528761755287677mer-m87552876075528782151-18.88
CAediting_1136010chr16_75528717_-ENSG00000135702.13ENST00000336257hsa-miR-3680-3p75528716755287238mer-1a7552871675528738140-17.35
CAediting_1136010chr16_75528717_-ENSG00000135702.13ENST00000336257hsa-miR-3680-3p75528716755287238mer-1a7552871675528738140-17.35
CAediting_1135996chr16_75528577_-ENSG00000135702.13ENST00000336257hsa-miR-431-5p75528574755285807mer-m87552857375528594147-21.63
CAediting_1136020chr16_75528752_-ENSG00000135702.13ENST00000336257hsa-miR-443575528751755287588mer-1a7552875175528771146-18.85
CAediting_1136020chr16_75528752_-ENSG00000135702.13ENST00000336257hsa-miR-443575528751755287588mer-1a7552875175528771146-18.85
CAediting_1136005chr16_75528680_-ENSG00000135702.13ENST00000336257hsa-miR-4731-5p75528678755286836mer7552867775528697146-27.92
CAediting_1136008chr16_75528712_-ENSG00000135702.13ENST00000336257hsa-miR-4735-5p75528711755287177mer-m87552871075528731148-7.46
CAediting_1136009chr16_75528716_-ENSG00000135702.13ENST00000336257hsa-miR-4735-5p75528711755287177mer-m87552871075528731148-7.46
CAediting_1135998chr16_75528624_-ENSG00000135702.13ENST00000336257hsa-miR-4772-3p75528623755286297mer-m87552862275528644154-17.15
CAediting_1136008chr16_75528712_-ENSG00000135702.13ENST00000336257hsa-miR-477575528712755287187mer-m87552871175528733153-6.64
CAediting_1136009chr16_75528716_-ENSG00000135702.13ENST00000336257hsa-miR-477575528712755287187mer-m87552871175528733153-6.64
CAediting_1136010chr16_75528717_-ENSG00000135702.13ENST00000336257hsa-miR-477575528712755287187mer-m87552871175528733153-6.64
CAediting_1136019chr16_75528751_-ENSG00000135702.13ENST00000336257hsa-miR-4781-3p75528747755287548mer-1a7552874775528765144-13.83
CAediting_1136020chr16_75528752_-ENSG00000135702.13ENST00000336257hsa-miR-4781-3p75528747755287548mer-1a7552874775528765144-13.83
CAediting_1136023chr16_75528815_-ENSG00000135702.13ENST00000336257hsa-miR-5089-5p75528815755288217mer-m87552881475528833146-13.24
CAediting_1136024chr16_75528820_-ENSG00000135702.13ENST00000336257hsa-miR-5089-5p75528815755288217mer-m87552881475528833146-13.24
CAediting_1136005chr16_75528680_-ENSG00000135702.13ENST00000336257hsa-miR-5089-5p75528680755286867mer-m87552867975528700150-15.43
CAediting_1136006chr16_75528685_-ENSG00000135702.13ENST00000336257hsa-miR-5089-5p75528680755286867mer-m87552867975528700150-15.43
CAediting_1135999chr16_75528637_-ENSG00000135702.13ENST00000336257hsa-miR-516b-5p75528637755286437mer-m87552863675528658144-16.43
CAediting_1136000chr16_75528639_-ENSG00000135702.13ENST00000336257hsa-miR-516b-5p75528637755286437mer-m87552863675528658144-16.43
CAediting_1135999chr16_75528637_-ENSG00000135702.13ENST00000336257hsa-miR-516b-5p75528637755286437mer-m87552863675528658144-16.43
CAediting_1136000chr16_75528639_-ENSG00000135702.13ENST00000336257hsa-miR-516b-5p75528637755286437mer-m87552863675528658144-16.43
CAediting_1135999chr16_75528637_-ENSG00000135702.13ENST00000336257hsa-miR-518c-5p75528636755286427mer-m87552863575528659151-21.74
CAediting_1136000chr16_75528639_-ENSG00000135702.13ENST00000336257hsa-miR-518c-5p75528636755286427mer-m87552863575528659151-21.74
CAediting_1136004chr16_75528676_-ENSG00000135702.13ENST00000336257hsa-miR-56275528672755286798mer-1a7552867275528691150-12.71
CAediting_1136021chr16_75528765_-ENSG00000135702.13ENST00000336257hsa-miR-570575528763755287686mer7552876275528783154-22.78
CAediting_1136006chr16_75528685_-ENSG00000135702.13ENST00000336257hsa-miR-6504-3p75528684755286907mer-m87552868375528704145-12.4
CAediting_1136007chr16_75528686_-ENSG00000135702.13ENST00000336257hsa-miR-6504-3p75528684755286907mer-m87552868375528704145-12.4
CAediting_1136023chr16_75528815_-ENSG00000135702.13ENST00000336257hsa-miR-6506-5p75528814755288207mer-m87552881375528835144-16.21
CAediting_1136005chr16_75528680_-ENSG00000135702.13ENST00000336257hsa-miR-6506-5p75528679755286857mer-m87552867875528699151-13.33
CAediting_1136003chr16_75528672_-ENSG00000135702.13ENST00000336257hsa-miR-660-3p75528667755286726mer7552866675528687146-22.53
CAediting_1136026chr16_75528829_-ENSG00000135702.13ENST00000336257hsa-miR-6807-5p75528829755288357mer-m87552882875528849145-22.46
CAediting_1136016chr16_75528730_-ENSG00000135702.13ENST00000336257hsa-miR-6832-5p75528729755287357mer-m87552872875528750150-21.83
CAediting_1136025chr16_75528821_-ENSG00000135702.13ENST00000336257hsa-miR-7151-3p75528820755288278mer-1a7552882075528836146-17.62
CAediting_1136001chr16_75528650_-ENSG00000135702.13ENST00000336257hsa-miR-806275528648755286547mer-m87552864775528667141-12.31
CAediting_1136009chr16_75528716_-ENSG00000135702.13ENST00000336257hsa-miR-9983-3p75528715755287217mer-m87552871475528735140-6.09
CAediting_1136010chr16_75528717_-ENSG00000135702.13ENST00000336257hsa-miR-9983-3p75528715755287217mer-m87552871475528735140-6.09

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000135702.13ENST00000336257hsa-miR-200b-3p75528810755288167mer-m87552880975528830140-10.87
CAediting_1054808chr15_66496985_-ENSG00000135702.13ENST00000336257hsa-miR-451275529123755291297mer-m87552912275529142154-31.22

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CHST5

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for CHST5

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for CHST5

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CHST5

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
COADCAediting_1136015chr16_75528727_-0.001425703384106410.0148528306.844

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RelatedDrugs for CHST5

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CHST5

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource