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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TRAM1 (CAeditome ID:23471)

Gene summary for TRAM1

check button Gene summary
Gene informationGene symbol

TRAM1

Gene ID

23471

Gene nametranslocation associated membrane protein 1
SynonymsPNAS8|TRAM|TRAMP
Cytomap

8q13.3

Type of geneprotein-coding
Descriptiontranslocating chain-associated membrane protein 1translocating chain-associating membrane proteintranslocation-associating membrane protein 1
Modification date20210518
UniProtAcc

Q15629

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TRAM1

GO:0005783

Translocating chain-associated membrane protein 1

18555783

TRAM1

GO:0030176

Translocating chain-associated membrane protein 1

12475939


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RNA A-to-I events for TRAM1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000067167.6

check button RNA A-to-I editing events in Cancer.
CAediting_645353(70575455, -), CAediting_645354(70575473, -), CAediting_645355(70575500, -), CAediting_645356(70575502, -), CAediting_645357(70575521, -), CAediting_645358(70575555, -), CAediting_645359(70575561, -), CAediting_645360(70575569, -), CAediting_645361(70575583, -), CAediting_645362(70575587, -), CAediting_645363(70575807, -), CAediting_645364(70575937, -), CAediting_645365(70575953, -), CAediting_645366(70575955, -), CAediting_645367(70575961, -), CAediting_645368(70575988, -), CAediting_645369(70575989, -), CAediting_645370(70576008, -), CAediting_645371(70576019, -), CAediting_645372(70576038, -), CAediting_645373(70576058, -), CAediting_645374(70576069, -), CAediting_645375(70576575, -), CAediting_645376(70576577, -), CAediting_645377(70576587, -), CAediting_645378(70576607, -), CAediting_645379(70576622, -), CAediting_645380(70576632, -), CAediting_645381(70576635, -), CAediting_645382(70576642, -), CAediting_645383(70576646, -), CAediting_645384(70576695, -), CAediting_645385(70576715, -), CAediting_645386(70576752, -), CAediting_645387(70576931, -), CAediting_645388(70576997, -), CAediting_645389(70577012, -), CAediting_645390(70577019, -), CAediting_645391(70577023, -), CAediting_645392(70577038, -), CAediting_645393(70577058, -), CAediting_645394(70577059, -), CAediting_645395(70577065, -), CAediting_645396(70577066, -), CAediting_645397(70577068, -), CAediting_645398(70577069, -), CAediting_645399(70577070, -), CAediting_645400(70577072, -), CAediting_645401(70577075, -), CAediting_645402(70577077, -), CAediting_645403(70577083, -), CAediting_645404(70577084, -), CAediting_645405(70577085, -), CAediting_645406(70577589, -), CAediting_645407(70577643, -), CAediting_645408(70577649, -), CAediting_645409(70577658, -), CAediting_645410(70577660, -), CAediting_645411(70577675, -), CAediting_645412(70577688, -), CAediting_645413(70577690, -), CAediting_645414(70577702, -), CAediting_645415(70577776, -), CAediting_645416(70577988, -), CAediting_645417(70578231, -), CAediting_645418(70578238, -), CAediting_645419(70578241, -), CAediting_645420(70578247, -), CAediting_645421(70578279, -), CAediting_645422(70578286, -), CAediting_645423(70578302, -), CAediting_645424(70578303, -), CAediting_645425(70578307, -), CAediting_645426(70578312, -), CAediting_645427(70578313, -), CAediting_645428(70578322, -), CAediting_645429(70578327, -), CAediting_645430(70578328, -), CAediting_645431(70578341, -), CAediting_645432(70578365, -), CAediting_645433(70578430, -), CAediting_645434(70578438, -), CAediting_645435(70578447, -), CAediting_645436(70578452, -), CAediting_645437(70578455, -), CAediting_645438(70578469, -), CAediting_645439(70578508, -), CAediting_645440(70578521, -), CAediting_645441(70578533, -), CAediting_645442(70578550, -), CAediting_645443(70578551, -), CAediting_645444(70578586, -), CAediting_645445(70581175, -), CAediting_645446(70582357, -), CAediting_645447(70582373, -), CAediting_645448(70582391, -), CAediting_645449(70582392, -), CAediting_645450(70582406, -), CAediting_645451(70582419, -), CAediting_645452(70582454, -), CAediting_645453(70587252, -), CAediting_645454(70587319, -), CAediting_645455(70588012, -), CAediting_645456(70588025, -), CAediting_645457(70588092, -), CAediting_645458(70589620, -), CAediting_645459(70589646, -), CAediting_645460(70589838, -), CAediting_645461(70590601, -), CAediting_645462(70590610, -),

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RNA editing positional annotations for TRAM1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_645353chr8_70575455_-intronic
CAediting_645354chr8_70575473_-intronic
CAediting_645355chr8_70575500_-intronic
CAediting_645356chr8_70575502_-intronic
CAediting_645357chr8_70575521_-intronic
CAediting_645358chr8_70575555_-intronic
CAediting_645359chr8_70575561_-intronic
CAediting_645360chr8_70575569_-intronic
CAediting_645361chr8_70575583_-intronic
CAediting_645362chr8_70575587_-intronic
CAediting_645363chr8_70575807_-intronic
CAediting_645364chr8_70575937_-intronic
CAediting_645365chr8_70575953_-intronic
CAediting_645366chr8_70575955_-intronic
CAediting_645367chr8_70575961_-intronic
CAediting_645368chr8_70575988_-intronic
CAediting_645369chr8_70575989_-intronic
CAediting_645370chr8_70576008_-intronic
CAediting_645371chr8_70576019_-intronic
CAediting_645372chr8_70576038_-intronic
CAediting_645373chr8_70576058_-intronic
CAediting_645374chr8_70576069_-intronic
CAediting_645375chr8_70576575_-intronic
CAediting_645376chr8_70576577_-intronic
CAediting_645377chr8_70576587_-intronic
CAediting_645378chr8_70576607_-intronic
CAediting_645379chr8_70576622_-intronic
CAediting_645380chr8_70576632_-intronic
CAediting_645381chr8_70576635_-intronic
CAediting_645382chr8_70576642_-intronic
CAediting_645383chr8_70576646_-intronic
CAediting_645384chr8_70576695_-intronic
CAediting_645385chr8_70576715_-intronic
CAediting_645386chr8_70576752_-intronic
CAediting_645387chr8_70576931_-intronic
CAediting_645388chr8_70576997_-intronic
CAediting_645389chr8_70577012_-intronic
CAediting_645390chr8_70577019_-intronic
CAediting_645391chr8_70577023_-intronic
CAediting_645392chr8_70577038_-intronic
CAediting_645393chr8_70577058_-intronic
CAediting_645394chr8_70577059_-intronic
CAediting_645395chr8_70577065_-intronic
CAediting_645396chr8_70577066_-intronic
CAediting_645397chr8_70577068_-intronic
CAediting_645398chr8_70577069_-intronic
CAediting_645399chr8_70577070_-intronic
CAediting_645400chr8_70577072_-intronic
CAediting_645401chr8_70577075_-intronic
CAediting_645402chr8_70577077_-intronic
CAediting_645403chr8_70577083_-intronic
CAediting_645404chr8_70577084_-intronic
CAediting_645405chr8_70577085_-intronic
CAediting_645406chr8_70577589_-intronic
CAediting_645407chr8_70577643_-intronic
CAediting_645408chr8_70577649_-intronic
CAediting_645409chr8_70577658_-intronic
CAediting_645410chr8_70577660_-intronic
CAediting_645411chr8_70577675_-intronic
CAediting_645412chr8_70577688_-intronic
CAediting_645413chr8_70577690_-intronic
CAediting_645414chr8_70577702_-intronic
CAediting_645415chr8_70577776_-intronic
CAediting_645416chr8_70577988_-intronic
CAediting_645417chr8_70578231_-intronic
CAediting_645418chr8_70578238_-intronic
CAediting_645419chr8_70578241_-intronic
CAediting_645420chr8_70578247_-intronic
CAediting_645421chr8_70578279_-intronic
CAediting_645422chr8_70578286_-intronic
CAediting_645423chr8_70578302_-intronic
CAediting_645424chr8_70578303_-intronic
CAediting_645425chr8_70578307_-intronic
CAediting_645426chr8_70578312_-intronic
CAediting_645427chr8_70578313_-intronic
CAediting_645428chr8_70578322_-intronic
CAediting_645429chr8_70578327_-intronic
CAediting_645430chr8_70578328_-intronic
CAediting_645431chr8_70578341_-intronic
CAediting_645432chr8_70578365_-intronic
CAediting_645433chr8_70578430_-intronic
CAediting_645434chr8_70578438_-intronic
CAediting_645435chr8_70578447_-intronic
CAediting_645436chr8_70578452_-intronic
CAediting_645437chr8_70578455_-intronic
CAediting_645438chr8_70578469_-intronic
CAediting_645439chr8_70578508_-intronic
CAediting_645440chr8_70578521_-intronic
CAediting_645441chr8_70578533_-intronic
CAediting_645442chr8_70578550_-intronic
CAediting_645443chr8_70578551_-intronic
CAediting_645444chr8_70578586_-intronic
CAediting_645445chr8_70581175_-intronic
CAediting_645446chr8_70582357_-intronic
CAediting_645447chr8_70582373_-intronic
CAediting_645448chr8_70582391_-intronic
CAediting_645449chr8_70582392_-intronic
CAediting_645450chr8_70582406_-intronic
CAediting_645451chr8_70582419_-intronic
CAediting_645452chr8_70582454_-intronic
CAediting_645453chr8_70587252_-ncRNA_intronic
CAediting_645454chr8_70587319_-ncRNA_intronic
CAediting_645455chr8_70588012_-ncRNA_intronic
CAediting_645456chr8_70588025_-ncRNA_intronic
CAediting_645457chr8_70588092_-ncRNA_intronic
CAediting_645458chr8_70589620_-ncRNA_intronic
CAediting_645459chr8_70589646_-ncRNA_intronic
CAediting_645460chr8_70589838_-ncRNA_intronic
CAediting_645461chr8_70590601_-ncRNA_intronic
CAediting_645462chr8_70590610_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_645353chr8_70575455_-SINEAluAluJr
CAediting_645354chr8_70575473_-SINEAluAluJr
CAediting_645355chr8_70575500_-SINEAluAluJr
CAediting_645356chr8_70575502_-SINEAluAluJr
CAediting_645357chr8_70575521_-SINEAluAluJr
CAediting_645358chr8_70575555_-SINEAluAluJr
CAediting_645359chr8_70575561_-SINEAluAluJr
CAediting_645360chr8_70575569_-SINEAluAluJr
CAediting_645361chr8_70575583_-SINEAluAluJr
CAediting_645362chr8_70575587_-SINEAluAluJr
CAediting_645363chr8_70575807_-SINEAluAluSx1
CAediting_645364chr8_70575937_-SINEAluAluSx1
CAediting_645365chr8_70575953_-SINEAluAluSx1
CAediting_645366chr8_70575955_-SINEAluAluSx1
CAediting_645367chr8_70575961_-SINEAluAluSx1
CAediting_645368chr8_70575988_-SINEAluAluSx1
CAediting_645369chr8_70575989_-SINEAluAluSx1
CAediting_645370chr8_70576008_-SINEAluAluSx1
CAediting_645371chr8_70576019_-SINEAluAluSx1
CAediting_645372chr8_70576038_-SINEAluAluSx1
CAediting_645373chr8_70576058_-SINEAluAluSx1
CAediting_645374chr8_70576069_-SINEAluAluSx1
CAediting_645375chr8_70576575_-SINEAluAluSz6
CAediting_645376chr8_70576577_-SINEAluAluSz6
CAediting_645377chr8_70576587_-SINEAluAluSz6
CAediting_645378chr8_70576607_-SINEAluAluSz6
CAediting_645379chr8_70576622_-SINEAluAluSz6
CAediting_645380chr8_70576632_-SINEAluAluSz6
CAediting_645381chr8_70576635_-SINEAluAluSz6
CAediting_645382chr8_70576642_-SINEAluAluSz6
CAediting_645383chr8_70576646_-SINEAluAluSz6
CAediting_645384chr8_70576695_-LTRERV1MER52A
CAediting_645385chr8_70576715_-LTRERV1MER52A
CAediting_645386chr8_70576752_-LTRERV1MER52A
CAediting_645387chr8_70576931_-LTRERV1MER52A
CAediting_645388chr8_70576997_-LTRERV1MER52A
CAediting_645389chr8_70577012_-LTRERV1MER52A
CAediting_645390chr8_70577019_-LTRERV1MER52A
CAediting_645391chr8_70577023_-LTRERV1MER52A
CAediting_645392chr8_70577038_-LTRERV1MER52A
CAediting_645393chr8_70577058_-LTRERV1MER52A
CAediting_645394chr8_70577059_-LTRERV1MER52A
CAediting_645395chr8_70577065_-LTRERV1MER52A
CAediting_645396chr8_70577066_-LTRERV1MER52A
CAediting_645397chr8_70577068_-LTRERV1MER52A
CAediting_645398chr8_70577069_-LTRERV1MER52A
CAediting_645399chr8_70577070_-LTRERV1MER52A
CAediting_645400chr8_70577072_-LTRERV1MER52A
CAediting_645401chr8_70577075_-LTRERV1MER52A
CAediting_645402chr8_70577077_-LTRERV1MER52A
CAediting_645403chr8_70577083_-LTRERV1MER52A
CAediting_645404chr8_70577084_-LTRERV1MER52A
CAediting_645405chr8_70577085_-LTRERV1MER52A
CAediting_645406chr8_70577589_-LTRERV1MER52A
CAediting_645407chr8_70577643_-LTRERV1MER52A
CAediting_645408chr8_70577649_-LTRERV1MER52A
CAediting_645409chr8_70577658_-LTRERV1MER52A
CAediting_645410chr8_70577660_-LTRERV1MER52A
CAediting_645411chr8_70577675_-LTRERV1MER52A
CAediting_645412chr8_70577688_-LTRERV1MER52A
CAediting_645413chr8_70577690_-LTRERV1MER52A
CAediting_645414chr8_70577702_-LTRERV1MER52A
CAediting_645415chr8_70577776_-LTRERV1MER52A
CAediting_645416chr8_70577988_-LTRERV1MER52A
CAediting_645417chr8_70578231_-SINEAluAluJb
CAediting_645418chr8_70578238_-SINEAluAluJb
CAediting_645419chr8_70578241_-SINEAluAluJb
CAediting_645420chr8_70578247_-SINEAluAluJb
CAediting_645421chr8_70578279_-SINEAluAluJb
CAediting_645422chr8_70578286_-SINEAluAluJb
CAediting_645423chr8_70578302_-SINEAluAluJb
CAediting_645424chr8_70578303_-SINEAluAluJb
CAediting_645425chr8_70578307_-SINEAluAluJb
CAediting_645426chr8_70578312_-SINEAluAluJb
CAediting_645427chr8_70578313_-SINEAluAluJb
CAediting_645428chr8_70578322_-SINEAluAluJb
CAediting_645429chr8_70578327_-SINEAluAluJb
CAediting_645430chr8_70578328_-SINEAluAluJb
CAediting_645431chr8_70578341_-SINEAluAluJb
CAediting_645432chr8_70578365_-SINEAluAluJb
CAediting_645433chr8_70578430_-SINEAluAluJb
CAediting_645434chr8_70578438_-SINEAluAluJb
CAediting_645435chr8_70578447_-SINEAluAluJb
CAediting_645436chr8_70578452_-SINEAluAluJb
CAediting_645437chr8_70578455_-SINEAluAluJb
CAediting_645438chr8_70578469_-SINEAluAluJb
CAediting_645439chr8_70578508_-SINEAluAluJb
CAediting_645440chr8_70578521_-SINEAluAluJb
CAediting_645441chr8_70578533_-SINEAluAluJb
CAediting_645442chr8_70578550_-SINEAluAluJb
CAediting_645443chr8_70578551_-SINEAluAluJb
CAediting_645444chr8_70578586_-SINEAluAluJb
CAediting_645445chr8_70581175_-SINEAluFLAM_A
CAediting_645446chr8_70582357_-SINEAluFAM
CAediting_645447chr8_70582373_-SINEAluFAM
CAediting_645448chr8_70582391_-SINEAluFAM
CAediting_645449chr8_70582392_-SINEAluFAM
CAediting_645450chr8_70582406_-SINEAluFAM
CAediting_645451chr8_70582419_-SINEAluFAM
CAediting_645452chr8_70582454_-SINEAluFAM
CAediting_645453chr8_70587252_-SINEAluFLAM_C
CAediting_645454chr8_70587319_-SINEAluFLAM_C
CAediting_645455chr8_70588012_-SINEAluAluJr4
CAediting_645456chr8_70588025_-SINEAluAluJr4
CAediting_645457chr8_70588092_-SINEAluAluJr4
CAediting_645458chr8_70589620_-SINEAluAluJb
CAediting_645459chr8_70589646_-SINEAluAluJb
CAediting_645460chr8_70589838_-SINEAluAluJb
CAediting_645461chr8_70590601_-SINEAluFAM
CAediting_645462chr8_70590610_-SINEAluFAM

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RNA A-to-I editing events in the alternative splicing sites for TRAM1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000067167.6.TRAM1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000067167.6.TRAM1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRAM1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TRAM1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for TRAM1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000067167.6ENST00000521425hsa-miR-200b-3p70574866705748738mer-1a7057486670574887147-13.18

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TRAM1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TRAM1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for TRAM1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
LUADpathologic_stageCAediting_645356chr8_70575502_-0.01192000795762520.339879832604074

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Relation with survival for TRAM1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TRAM1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TRAM1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource