CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: FN1 (CAeditome ID:2335)

Gene summary for FN1

check button Gene summary
Gene informationGene symbol

FN1

Gene ID

2335

Gene namefibronectin 1
SynonymsCIG|ED-B|FINC|FN|FNZ|GFND|GFND2|LETS|MSF|SMDCF
Cytomap

2q35

Type of geneprotein-coding
Descriptionfibronectincold-insoluble globulinepididymis secretory sperm binding proteinmigration-stimulating factor
Modification date20210518
UniProtAcc

P02751

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
FN1

GO:0005178

Fibronectin

19738201

FN1

GO:0043394

Fibronectin

29030641

FN1

GO:0001932

Fibronectin

11792823

FN1

GO:0007229

Fibronectin

19126672

FN1

GO:0008284

Fibronectin

25834989

FN1

GO:0010628

Fibronectin

25834989

FN1

GO:0014068

Fibronectin

19126672

FN1

GO:0018149

Fibronectin

3997886

FN1

GO:0034446

Fibronectin

16236823

FN1

GO:0034446

Fibronectin

19126672

FN1

GO:0035987

Fibronectin

23154389

FN1

GO:0048146

Fibronectin

25834989

FN1

GO:0051702

Fibronectin

12167537

FN1

GO:0051702

Fibronectin

12167537

FN1

GO:0051702

Fibronectin

12421310

FN1

GO:0051702

Fibronectin

19429745

FN1

GO:0070372

Fibronectin

11792823

FN1

GO:0071635

Fibronectin

25834989

FN1

GO:1901166

Fibronectin

26571399

FN1

GO:1904237

Fibronectin

25834989

FN1

GO:0005615

Fibronectin

15292204

FN1

GO:0005793

Fibronectin

15308636

FN1

GO:0031012

Fibronectin

26571399

FN1

GO:0062023

Fibronectin

16157329

FN1

GO:0062023

Fibronectin

1632457

FN1

GO:0070062

Fibronectin

21276792

FN1

GO:0005577

Fibronectin

3997886


Top

RNA A-to-I events for FN1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000115414.17

check button RNA A-to-I editing events in Cancer.
CAediting_242053(215361187, -), CAediting_242054(215365884, -), CAediting_242055(215365898, -), CAediting_242056(215366019, -), CAediting_242057(215366026, -), CAediting_242058(215366042, -), CAediting_242059(215366097, -), CAediting_242060(215371011, -), CAediting_242061(215371025, -), CAediting_242062(215371026, -), CAediting_242063(215371098, -), CAediting_242064(215371105, -), CAediting_242065(215371717, -), CAediting_242066(215371729, -), CAediting_242067(215371731, -), CAediting_242068(215371777, -), CAediting_242069(215371780, -), CAediting_242070(215371785, -), CAediting_242071(215371786, -), CAediting_242072(215371794, -), CAediting_242073(215379821, -), CAediting_242074(215379923, -), CAediting_242075(215379946, -), CAediting_242076(215381736, -), CAediting_242077(215385440, -), CAediting_242078(215385450, -), CAediting_242079(215385453, -), CAediting_242080(215385486, -), CAediting_242081(215385499, -), CAediting_242082(215385523, -), CAediting_242083(215385830, -), CAediting_242084(215385870, -), CAediting_242085(215385942, -), CAediting_242086(215386048, -), CAediting_242087(215386049, -), CAediting_242088(215386124, -), CAediting_242089(215386130, -), CAediting_242090(215386150, -), CAediting_242091(215386174, -), CAediting_242092(215386205, -), CAediting_242093(215386209, -), CAediting_242094(215386215, -), CAediting_242095(215386225, -), CAediting_242096(215386237, -), CAediting_242097(215386241, -), CAediting_242098(215386244, -), CAediting_242099(215386245, -), CAediting_242100(215386246, -), CAediting_242101(215386247, -), CAediting_242102(215386250, -), CAediting_242103(215386270, -), CAediting_242104(215386280, -), CAediting_242105(215386290, -), CAediting_242106(215386295, -), CAediting_242107(215386296, -), CAediting_242108(215386304, -), CAediting_242109(215386309, -), CAediting_242110(215386319, -), CAediting_242111(215386326, -), CAediting_242112(215386349, -), CAediting_242113(215386350, -), CAediting_242114(215386353, -), CAediting_242115(215386358, -), CAediting_242116(215389189, -), CAediting_242117(215389196, -), CAediting_242118(215389200, -), CAediting_242119(215389201, -), CAediting_242120(215389228, -), CAediting_242121(215389232, -), CAediting_242122(215389241, -), CAediting_242123(215389242, -), CAediting_242124(215389260, -), CAediting_242125(215389264, -), CAediting_242126(215389271, -), CAediting_242127(215389274, -), CAediting_242128(215389277, -), CAediting_242129(215389279, -), CAediting_242130(215389280, -), CAediting_242131(215389281, -), CAediting_242132(215389282, -), CAediting_242133(215389298, -), CAediting_242134(215389307, -), CAediting_242135(215389617, -), CAediting_242136(215389631, -), CAediting_242137(215389646, -), CAediting_242138(215389690, -), CAediting_242139(215389707, -), CAediting_242140(215389708, -), CAediting_242141(215389714, -), CAediting_242142(215389715, -), CAediting_242143(215389721, -), CAediting_242144(215389782, -), CAediting_242145(215390231, -), CAediting_242146(215390317, -), CAediting_242147(215390389, -), CAediting_242148(215390409, -), CAediting_242149(215395487, -), CAediting_242150(215399970, -), CAediting_242151(215399971, -), CAediting_242152(215400024, -), CAediting_242153(215400495, -), CAediting_242154(215400517, -), CAediting_242155(215400534, -), CAediting_242156(215400586, -), CAediting_242157(215400589, -), CAediting_242158(215400636, -), CAediting_242159(215400670, -), CAediting_242160(215400825, -), CAediting_242161(215400974, -), CAediting_242162(215400995, -), CAediting_242163(215412464, -), CAediting_242164(215412526, -), CAediting_242165(215412575, -), CAediting_242166(215413212, -), CAediting_242167(215413228, -), CAediting_242168(215425575, -), CAediting_242169(215426144, -), CAediting_242170(215426987, -),

Top

RNA editing positional annotations for FN1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_242053chr2_215361187_-ncRNA_exonic
CAediting_242054chr2_215365884_-ncRNA_intronic
CAediting_242055chr2_215365898_-ncRNA_intronic
CAediting_242056chr2_215366019_-ncRNA_intronic
CAediting_242057chr2_215366026_-ncRNA_intronic
CAediting_242058chr2_215366042_-ncRNA_intronic
CAediting_242059chr2_215366097_-ncRNA_intronic
CAediting_242060chr2_215371011_-ncRNA_intronic
CAediting_242061chr2_215371025_-ncRNA_intronic
CAediting_242062chr2_215371026_-ncRNA_intronic
CAediting_242063chr2_215371098_-ncRNA_intronic
CAediting_242064chr2_215371105_-ncRNA_intronic
CAediting_242065chr2_215371717_-ncRNA_intronic
CAediting_242066chr2_215371729_-ncRNA_intronic
CAediting_242067chr2_215371731_-ncRNA_intronic
CAediting_242068chr2_215371777_-ncRNA_intronic
CAediting_242069chr2_215371780_-ncRNA_intronic
CAediting_242070chr2_215371785_-ncRNA_intronic
CAediting_242071chr2_215371786_-ncRNA_intronic
CAediting_242072chr2_215371794_-ncRNA_intronic
CAediting_242073chr2_215379821_-ncRNA_exonic
CAediting_242074chr2_215379923_-ncRNA_exonic
CAediting_242075chr2_215379946_-ncRNA_exonic
CAediting_242076chr2_215381736_-ncRNA_exonic
CAediting_242077chr2_215385440_-ncRNA_intronic
CAediting_242078chr2_215385450_-ncRNA_intronic
CAediting_242079chr2_215385453_-ncRNA_intronic
CAediting_242080chr2_215385486_-ncRNA_intronic
CAediting_242081chr2_215385499_-ncRNA_intronic
CAediting_242082chr2_215385523_-ncRNA_intronic
CAediting_242083chr2_215385830_-ncRNA_intronic
CAediting_242084chr2_215385870_-ncRNA_intronic
CAediting_242085chr2_215385942_-ncRNA_intronic
CAediting_242086chr2_215386048_-ncRNA_intronic
CAediting_242087chr2_215386049_-ncRNA_intronic
CAediting_242088chr2_215386124_-ncRNA_intronic
CAediting_242089chr2_215386130_-ncRNA_intronic
CAediting_242090chr2_215386150_-ncRNA_intronic
CAediting_242091chr2_215386174_-ncRNA_intronic
CAediting_242092chr2_215386205_-ncRNA_intronic
CAediting_242093chr2_215386209_-ncRNA_intronic
CAediting_242094chr2_215386215_-ncRNA_intronic
CAediting_242095chr2_215386225_-ncRNA_intronic
CAediting_242096chr2_215386237_-ncRNA_intronic
CAediting_242097chr2_215386241_-ncRNA_intronic
CAediting_242098chr2_215386244_-ncRNA_intronic
CAediting_242099chr2_215386245_-ncRNA_intronic
CAediting_242100chr2_215386246_-ncRNA_intronic
CAediting_242101chr2_215386247_-ncRNA_intronic
CAediting_242102chr2_215386250_-ncRNA_intronic
CAediting_242103chr2_215386270_-ncRNA_intronic
CAediting_242104chr2_215386280_-ncRNA_intronic
CAediting_242105chr2_215386290_-ncRNA_intronic
CAediting_242106chr2_215386295_-ncRNA_intronic
CAediting_242107chr2_215386296_-ncRNA_intronic
CAediting_242108chr2_215386304_-ncRNA_intronic
CAediting_242109chr2_215386309_-ncRNA_intronic
CAediting_242110chr2_215386319_-ncRNA_intronic
CAediting_242111chr2_215386326_-ncRNA_intronic
CAediting_242112chr2_215386349_-ncRNA_intronic
CAediting_242113chr2_215386350_-ncRNA_intronic
CAediting_242114chr2_215386353_-ncRNA_intronic
CAediting_242115chr2_215386358_-ncRNA_intronic
CAediting_242116chr2_215389189_-ncRNA_intronic
CAediting_242117chr2_215389196_-ncRNA_intronic
CAediting_242118chr2_215389200_-ncRNA_intronic
CAediting_242119chr2_215389201_-ncRNA_intronic
CAediting_242120chr2_215389228_-ncRNA_intronic
CAediting_242121chr2_215389232_-ncRNA_intronic
CAediting_242122chr2_215389241_-ncRNA_intronic
CAediting_242123chr2_215389242_-ncRNA_intronic
CAediting_242124chr2_215389260_-ncRNA_intronic
CAediting_242125chr2_215389264_-ncRNA_intronic
CAediting_242126chr2_215389271_-ncRNA_intronic
CAediting_242127chr2_215389274_-ncRNA_intronic
CAediting_242128chr2_215389277_-ncRNA_intronic
CAediting_242129chr2_215389279_-ncRNA_intronic
CAediting_242130chr2_215389280_-ncRNA_intronic
CAediting_242131chr2_215389281_-ncRNA_intronic
CAediting_242132chr2_215389282_-ncRNA_intronic
CAediting_242133chr2_215389298_-ncRNA_intronic
CAediting_242134chr2_215389307_-ncRNA_intronic
CAediting_242135chr2_215389617_-ncRNA_intronic
CAediting_242136chr2_215389631_-ncRNA_intronic
CAediting_242137chr2_215389646_-ncRNA_intronic
CAediting_242138chr2_215389690_-ncRNA_intronic
CAediting_242139chr2_215389707_-ncRNA_intronic
CAediting_242140chr2_215389708_-ncRNA_intronic
CAediting_242141chr2_215389714_-ncRNA_intronic
CAediting_242142chr2_215389715_-ncRNA_intronic
CAediting_242143chr2_215389721_-ncRNA_intronic
CAediting_242144chr2_215389782_-ncRNA_intronic
CAediting_242145chr2_215390231_-ncRNA_intronic
CAediting_242146chr2_215390317_-ncRNA_intronic
CAediting_242147chr2_215390389_-ncRNA_intronic
CAediting_242148chr2_215390409_-ncRNA_intronic
CAediting_242149chr2_215395487_-intronic
CAediting_242150chr2_215399970_-intronic
CAediting_242151chr2_215399971_-intronic
CAediting_242152chr2_215400024_-intronic
CAediting_242153chr2_215400495_-intronic
CAediting_242154chr2_215400517_-intronic
CAediting_242155chr2_215400534_-intronic
CAediting_242156chr2_215400586_-intronic
CAediting_242157chr2_215400589_-intronic
CAediting_242158chr2_215400636_-intronic
CAediting_242159chr2_215400670_-intronic
CAediting_242160chr2_215400825_-intronic
CAediting_242161chr2_215400974_-intronic
CAediting_242162chr2_215400995_-intronic
CAediting_242163chr2_215412464_-intronic
CAediting_242164chr2_215412526_-intronic
CAediting_242165chr2_215412575_-intronic
CAediting_242166chr2_215413212_-intronic
CAediting_242167chr2_215413228_-intronic
CAediting_242168chr2_215425575_-intronic
CAediting_242169chr2_215426144_-intronic
CAediting_242170chr2_215426987_-intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_242054chr2_215365884_-SINEAluAluSx1
CAediting_242055chr2_215365898_-SINEAluAluSx1
CAediting_242056chr2_215366019_-SINEAluAluSx1
CAediting_242057chr2_215366026_-SINEAluAluSx1
CAediting_242058chr2_215366042_-SINEAluAluSx1
CAediting_242059chr2_215366097_-SINEAluAluSx1
CAediting_242060chr2_215371011_-SINEAluAluSg
CAediting_242061chr2_215371025_-SINEAluAluSg
CAediting_242062chr2_215371026_-SINEAluAluSg
CAediting_242063chr2_215371098_-SINEAluAluSg
CAediting_242064chr2_215371105_-SINEAluAluSg
CAediting_242065chr2_215371717_-SINEAluAluSz
CAediting_242066chr2_215371729_-SINEAluAluSz
CAediting_242067chr2_215371731_-SINEAluAluSz
CAediting_242068chr2_215371777_-SINEAluAluSz
CAediting_242069chr2_215371780_-SINEAluAluSz
CAediting_242070chr2_215371785_-SINEAluAluSz
CAediting_242071chr2_215371786_-SINEAluAluSz
CAediting_242072chr2_215371794_-SINEAluAluSz
CAediting_242073chr2_215379821_-SINEAluAluJr
CAediting_242074chr2_215379923_-SINEAluAluJr
CAediting_242075chr2_215379946_-SINEAluAluJr
CAediting_242076chr2_215381736_-SINEAluAluSg
CAediting_242077chr2_215385440_-SINEAluAluSx1
CAediting_242078chr2_215385450_-SINEAluAluSx1
CAediting_242079chr2_215385453_-SINEAluAluSx1
CAediting_242080chr2_215385486_-SINEAluAluSx1
CAediting_242081chr2_215385499_-SINEAluAluSx1
CAediting_242082chr2_215385523_-SINEAluAluSx1
CAediting_242083chr2_215385830_-SINEAluAluSc
CAediting_242084chr2_215385870_-SINEAluAluSc
CAediting_242085chr2_215385942_-SINEAluAluSc
CAediting_242086chr2_215386048_-SINEAluAluSc
CAediting_242087chr2_215386049_-SINEAluAluSc
CAediting_242088chr2_215386124_-SINEAluAluSz
CAediting_242089chr2_215386130_-SINEAluAluSz
CAediting_242090chr2_215386150_-SINEAluAluSz
CAediting_242091chr2_215386174_-SINEAluAluSz
CAediting_242092chr2_215386205_-SINEAluAluSz
CAediting_242093chr2_215386209_-SINEAluAluSz
CAediting_242094chr2_215386215_-SINEAluAluSz
CAediting_242095chr2_215386225_-SINEAluAluSz
CAediting_242096chr2_215386237_-SINEAluAluSz
CAediting_242097chr2_215386241_-SINEAluAluSz
CAediting_242098chr2_215386244_-SINEAluAluSz
CAediting_242099chr2_215386245_-SINEAluAluSz
CAediting_242100chr2_215386246_-SINEAluAluSz
CAediting_242101chr2_215386247_-SINEAluAluSz
CAediting_242102chr2_215386250_-SINEAluAluSz
CAediting_242103chr2_215386270_-SINEAluAluSz
CAediting_242104chr2_215386280_-SINEAluAluSz
CAediting_242105chr2_215386290_-SINEAluAluSz
CAediting_242106chr2_215386295_-SINEAluAluSz
CAediting_242107chr2_215386296_-SINEAluAluSz
CAediting_242108chr2_215386304_-SINEAluAluSz
CAediting_242109chr2_215386309_-SINEAluAluSz
CAediting_242110chr2_215386319_-SINEAluAluSz
CAediting_242111chr2_215386326_-SINEAluAluSz
CAediting_242112chr2_215386349_-SINEAluAluSz
CAediting_242113chr2_215386350_-SINEAluAluSz
CAediting_242114chr2_215386353_-SINEAluAluSz
CAediting_242115chr2_215386358_-SINEAluAluSz
CAediting_242116chr2_215389189_-SINEAluAluSg
CAediting_242117chr2_215389196_-SINEAluAluSg
CAediting_242118chr2_215389200_-SINEAluAluSg
CAediting_242119chr2_215389201_-SINEAluAluSg
CAediting_242120chr2_215389228_-SINEAluAluSg
CAediting_242121chr2_215389232_-SINEAluAluSg
CAediting_242122chr2_215389241_-SINEAluAluSg
CAediting_242123chr2_215389242_-SINEAluAluSg
CAediting_242124chr2_215389260_-SINEAluAluSg
CAediting_242125chr2_215389264_-SINEAluAluSg
CAediting_242126chr2_215389271_-SINEAluAluSg
CAediting_242127chr2_215389274_-SINEAluAluSg
CAediting_242128chr2_215389277_-SINEAluAluSg
CAediting_242129chr2_215389279_-SINEAluAluSg
CAediting_242130chr2_215389280_-SINEAluAluSg
CAediting_242131chr2_215389281_-SINEAluAluSg
CAediting_242132chr2_215389282_-SINEAluAluSg
CAediting_242133chr2_215389298_-SINEAluAluSg
CAediting_242134chr2_215389307_-SINEAluAluSg
CAediting_242135chr2_215389617_-SINEAluAluSz
CAediting_242136chr2_215389631_-SINEAluAluSz
CAediting_242137chr2_215389646_-SINEAluAluSz
CAediting_242138chr2_215389690_-SINEAluAluSz
CAediting_242139chr2_215389707_-SINEAluAluSz
CAediting_242140chr2_215389708_-SINEAluAluSz
CAediting_242141chr2_215389714_-SINEAluAluSz
CAediting_242142chr2_215389715_-SINEAluAluSz
CAediting_242143chr2_215389721_-SINEAluAluSz
CAediting_242144chr2_215389782_-SINEAluAluSz
CAediting_242145chr2_215390231_-SINEAluAluJb
CAediting_242146chr2_215390317_-SINEAluAluJb
CAediting_242147chr2_215390389_-SINEAluAluJb
CAediting_242148chr2_215390409_-SINEAluAluJb
CAediting_242149chr2_215395487_-SINEAluAluSz6
CAediting_242150chr2_215399970_-SINEAluAluSz
CAediting_242151chr2_215399971_-SINEAluAluSz
CAediting_242152chr2_215400024_-SINEAluAluSz
CAediting_242153chr2_215400495_-SINEAluAluSx1
CAediting_242154chr2_215400517_-SINEAluAluSx1
CAediting_242155chr2_215400534_-SINEAluAluSx1
CAediting_242156chr2_215400586_-SINEAluAluSx1
CAediting_242157chr2_215400589_-SINEAluAluSx1
CAediting_242158chr2_215400636_-SINEAluAluSx1
CAediting_242159chr2_215400670_-SINEAluAluSx1
CAediting_242160chr2_215400825_-SINEAluAluSx1
CAediting_242161chr2_215400974_-SINEAluAluSx1
CAediting_242162chr2_215400995_-SINEAluAluSx1
CAediting_242163chr2_215412464_-SINEAluAluSc8
CAediting_242164chr2_215412526_-SINEAluAluSc8
CAediting_242165chr2_215412575_-SINEAluAluSc8
CAediting_242166chr2_215413212_-SINEAluAluSx
CAediting_242167chr2_215413228_-SINEAluAluSx
CAediting_242168chr2_215425575_-SINEAluAluSx
CAediting_242169chr2_215426144_-SINEAluAluY
CAediting_242170chr2_215426987_-SINEAluAluY

Top

RNA A-to-I editing events in the alternative splicing sites for FN1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000115414.17.FN1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000115414.17.FN1.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for FN1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
THCA.CAediting_242061.ENSG00000115414.FN1.png
Soverview

Top

Protein coding region RNA A-to-I editings for FN1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for FN1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000421182hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000421182hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000323926hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000323926hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000336916hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000336916hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000357867hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000357867hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000359671hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000359671hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000446046hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000446046hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000443816hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000443816hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000432072hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000432072hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000356005hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000356005hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000456923hsa-miR-12312153611842153611907mer-m8215361183215361202148.00-23.17
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000456923hsa-miR-6776-5p2153611862153611938mer-1a215361186215361204140.00-15.75

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000421182hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000323926hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000336916hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000357867hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000359671hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000446046hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000443816hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000432072hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000356005hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6
CAediting_242053chr2_215361187_-ENSG00000115414.17ENST00000456923hsa-miR-6740-5p2153611842153611918mer-1a215361184215361204142-12.6

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000421182hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000421182hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000421182hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000323926hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000323926hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000323926hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000336916hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000336916hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000336916hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000357867hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000357867hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000357867hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000359671hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000359671hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000359671hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000446046hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000446046hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000446046hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000443816hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000443816hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000443816hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000432072hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000432072hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000432072hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000356005hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000356005hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000356005hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1351755chr19_40282625_-ENSG00000115414.17ENST00000456923hsa-miR-6412153615202153615267mer-m8215361519215361542140-16.99
CAediting_442554chr5_154685830_+ENSG00000115414.17ENST00000456923hsa-miR-13032153613962153614027mer-m8215361395215361416146-14.11
CAediting_524911chr7_5495852_-ENSG00000115414.17ENST00000456923hsa-miR-589-3p2153614382153614447mer-m8215361437215361460154-17.95
CAediting_1229413chr17_67471544_+ENSG00000115414.17ENST00000426059hsa-miR-548aa2154147732154147797mer-m8215414772215414799143-10.85

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000421182hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000421182hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000323926hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000323926hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000336916hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000336916hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000357867hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000357867hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000359671hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000359671hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000446046hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000446046hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000443816hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000443816hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000432072hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000432072hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_393chr1_1167164_+ENSG00000115414.17ENST00000356005hsa-miR-200b-3p2153610182153610247mer-m8215361017215361038152-11.25
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000356005hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62
CAediting_1368054chr19_46709310_-ENSG00000115414.17ENST00000456923hsa-miR-320e2153614722153614798mer-1a215361472215361490155-16.62

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for FN1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000323926.9protein_codingSoverviewSoverview
ENST00000336916.7protein_codingSoverviewSoverview
ENST00000354785.7protein_codingSoverviewSoverview
ENST00000356005.7protein_codingSoverviewSoverview
ENST00000357867.7protein_codingSoverviewSoverview
ENST00000359671.4protein_codingSoverviewSoverview
ENST00000421182.4protein_codingSoverviewSoverview
ENST00000432072.5protein_codingSoverviewSoverview
ENST00000443816.4protein_codingSoverviewSoverview
ENST00000446046.4protein_codingSoverviewSoverview
ENST00000456923.4protein_codingSoverviewSoverview
ENST00000492816.5retained_intronSoverviewSoverview
ENST00000498719.1retained_intronSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_242053ENST00000323926.9chr2_215361187_--2822.40-2816.00-2822.40
CAediting_242053ENST00000336916.7chr2_215361187_--2739.50-2733.10-2739.50
CAediting_242053ENST00000354785.7chr2_215361187_--2924.90-2920.20-2924.90
CAediting_242053ENST00000356005.7chr2_215361187_--2577.00-2573.00-2577.00
CAediting_242053ENST00000357867.7chr2_215361187_--2557.70-2551.30-2557.70
CAediting_242053ENST00000359671.4chr2_215361187_--2767.20-2761.40-2767.20
CAediting_242053ENST00000421182.4chr2_215361187_--2618.10-2612.10-2618.10
CAediting_242053ENST00000432072.5chr2_215361187_--2548.50-2544.40-2548.50
CAediting_242053ENST00000443816.4chr2_215361187_--2556.70-2552.70-2556.70
CAediting_242053ENST00000446046.4chr2_215361187_--2631.20-2627.20-2631.20
CAediting_242053ENST00000456923.4chr2_215361187_--1147.90-1141.80-1147.90
CAediting_242053ENST00000492816.5chr2_215361187_--2549.40-2543.00-2549.90
CAediting_242073ENST00000492816.5chr2_215379821_--2543.00-2543.00-2549.90
CAediting_242074ENST00000492816.5chr2_215379923_--2542.90-2543.00-2549.90
CAediting_242075ENST00000492816.5chr2_215379946_--2543.00-2543.00-2549.90
CAediting_242076ENST00000492816.5chr2_215381736_--2543.30-2543.00-2549.90
CAediting_242053ENST00000498719.1chr2_215361187_--698.10-692.70-698.10

Top

Relation with ADAR for FN1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
THCACAediting_242061chr2_215371025_-0.02233050066689210.184030298824554....

Top

Relation with cancer stages for FN1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
THCApathologic_stageCAediting_242061chr2_215371025_-0.01024671785504730.207005572982537

Top

Relation with survival for FN1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for FN1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status
FN1P02751DB08888OcriplasminFibronectin BiotechDrugapproved
FN1P02751DB14548Zinc sulfate, unspecified formFibronectin SmallMoleculeDrugapproved|experimental
FN1P02751DB01593ZincFibronectin SmallMoleculeDrugapproved|investigational
FN1P02751DB14487Zinc acetateFibronectin SmallMoleculeDrugapproved|investigational
FN1P02751DB14533Zinc chlorideFibronectin SmallMoleculeDrugapproved|investigational

Top

RelatedDiseases for FN1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
FN1C0020538Hypertensive disease2CTD_human
FN1C0432221Spondylometaphyseal dysplasia, 'corner fracture' type2GENOMICS_ENGLAND;ORPHANET;UNIPROT
FN1C0000786Spontaneous abortion1CTD_human
FN1C0000822Abortion, Tubal1CTD_human
FN1C0003504Aortic Valve Insufficiency1CTD_human
FN1C0006142Malignant neoplasm of breast1CTD_human;UNIPROT
FN1C0007097Carcinoma1CTD_human
FN1C0007621Neoplastic Cell Transformation1CTD_human
FN1C0010346Crohn Disease1CTD_human
FN1C0011849Diabetes Mellitus1CTD_human
FN1C0011881Diabetic Nephropathy1CTD_human
FN1C0017636Glioblastoma1CTD_human
FN1C0017667Nodular glomerulosclerosis1CTD_human
FN1C0017668Focal glomerulosclerosis1CTD_human
FN1C0024667Animal Mammary Neoplasms1CTD_human
FN1C0024668Mammary Neoplasms, Experimental1CTD_human
FN1C0027626Neoplasm Invasiveness1CTD_human
FN1C0034069Pulmonary Fibrosis1CTD_human
FN1C0041956Ureteral obstruction1CTD_human
FN1C0085762Alcohol abuse1PSYGENET
FN1C0086432Hyalinosis, Segmental Glomerular1CTD_human
FN1C0149721Left Ventricular Hypertrophy1CTD_human
FN1C0156147Crohn's disease of large bowel1CTD_human
FN1C0205696Anaplastic carcinoma1CTD_human
FN1C0205697Carcinoma, Spindle-Cell1CTD_human
FN1C0205698Undifferentiated carcinoma1CTD_human
FN1C0205699Carcinomatosis1CTD_human
FN1C0267380Crohn's disease of the ileum1CTD_human
FN1C0334588Giant Cell Glioblastoma1CTD_human
FN1C0345967Malignant mesothelioma1CTD_human
FN1C0678202Regional enteritis1CTD_human
FN1C0678222Breast Carcinoma1CTD_human
FN1C0949272IIeocolitis1CTD_human
FN1C1257925Mammary Carcinoma, Animal1CTD_human
FN1C1257931Mammary Neoplasms, Human1CTD_human
FN1C1458155Mammary Neoplasms1CTD_human
FN1C1621958Glioblastoma Multiforme1CTD_human
FN1C1866075GLOMERULOPATHY WITH FIBRONECTIN DEPOSITS 2 (disorder)1CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
FN1C3830362Early Pregnancy Loss1CTD_human
FN1C3888104Glomerulopathy with fibronectin deposits1CTD_human;ORPHANET
FN1C4552766Miscarriage1CTD_human
FN1C4704874Mammary Carcinoma, Human1CTD_human
FN1C4721507Alveolitis, Fibrosing1CTD_human