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Editing gene: VPS39 (CAeditome ID:23339)

Gene summary for VPS39

Gene summary

Gene information	Gene symbol	VPS39
	Gene ID	23339
	Gene name	VPS39 subunit of HOPS complex
	Synonyms	TLP\|VAM6\|hVam6p
	Cytomap	15q15.1
	Type of gene	protein-coding
	Description	vam6/Vps39-like proteinTRAP1-like proteinVPS39, HOPS complex subunitvacuolar protein sorting 39 homolog
	Modification date	20210518
	UniProtAcc	Q96JC1
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
VPS39	GO:0034058	Vam6/Vps39-like protein	23167963
VPS39	GO:0061909	Vam6/Vps39-like protein	33422265
VPS39	GO:1902774	Vam6/Vps39-like protein	23167963
VPS39	GO:0005765	Vam6/Vps39-like protein	23167963
VPS39	GO:0005770	Vam6/Vps39-like protein	33422265
VPS39	GO:0031902	Vam6/Vps39-like protein	23167963
VPS39	GO:0030897	Vam6/Vps39-like protein	19109425
VPS39	GO:0030897	Vam6/Vps39-like protein	23901104
VPS39	GO:1902501	Vam6/Vps39-like protein	33422265

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RNA A-to-I events for VPS39

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000166887.14

RNA A-to-I editing events in Cancer.

CAediting_1032049(42170367, -), CAediting_1032050(42170375, -), CAediting_1032051(42170381, -), CAediting_1032052(42170391, -), CAediting_1032053(42170403, -), CAediting_1032054(42170408, -), CAediting_1032055(42170416, -), CAediting_1032056(42170420, -), CAediting_1032057(42170421, -), CAediting_1032058(42170441, -), CAediting_1032059(42170451, -), CAediting_1032060(42170459, -), CAediting_1032061(42170800, -), CAediting_1032062(42170801, -), CAediting_1032063(42170806, -), CAediting_1032064(42170816, -), CAediting_1032065(42170817, -), CAediting_1032066(42170825, -), CAediting_1032067(42170829, -), CAediting_1032068(42170834, -), CAediting_1032069(42170837, -), CAediting_1032070(42170840, -), CAediting_1032071(42170843, -), CAediting_1032072(42170852, -), CAediting_1032073(42170853, -), CAediting_1032074(42170860, -), CAediting_1032075(42170864, -), CAediting_1032076(42170878, -), CAediting_1032077(42170883, -), CAediting_1032078(42170895, -), CAediting_1032079(42170911, -), CAediting_1032080(42170937, -), CAediting_1032081(42170938, -), CAediting_1032082(42170942, -), CAediting_1032083(42170952, -), CAediting_1032084(42170979, -), CAediting_1032085(42170984, -), CAediting_1032086(42170986, -), CAediting_1032087(42171016, -), CAediting_1032088(42171024, -), CAediting_1032089(42174178, -), CAediting_1032090(42177063, -), CAediting_1032091(42177068, -), CAediting_1032092(42178746, -), CAediting_1032093(42178767, -), CAediting_1032094(42178768, -), CAediting_1032095(42178773, -), CAediting_1032096(42178816, -), CAediting_1032097(42178818, -), CAediting_1032098(42178819, -), CAediting_1032099(42178822, -), CAediting_1032100(42178834, -), CAediting_1032101(42178848, -), CAediting_1032102(42178851, -), CAediting_1032103(42178867, -), CAediting_1032104(42178872, -), CAediting_1032105(42178883, -), CAediting_1032106(42178895, -), CAediting_1032107(42178924, -), CAediting_1032108(42178925, -), CAediting_1032109(42178938, -), CAediting_1032110(42178939, -), CAediting_1032111(42178945, -), CAediting_1032112(42178961, -), CAediting_1032113(42178985, -), CAediting_1032114(42179001, -), CAediting_1032115(42179007, -), CAediting_1032116(42179313, -), CAediting_1032117(42179325, -), CAediting_1032118(42179326, -), CAediting_1032119(42179380, -), CAediting_1032120(42179514, -), CAediting_1032121(42181873, -), CAediting_1032122(42181881, -), CAediting_1032123(42181915, -), CAediting_1032124(42181917, -), CAediting_1032125(42181927, -), CAediting_1032126(42181941, -), CAediting_1032127(42181981, -), CAediting_1032128(42181986, -), CAediting_1032129(42181987, -), CAediting_1032130(42183130, -), CAediting_1032131(42183131, -), CAediting_1032132(42183168, -), CAediting_1032133(42183218, -), CAediting_1032134(42183226, -), CAediting_1032135(42183249, -), CAediting_1032136(42183306, -), CAediting_1032137(42183329, -), CAediting_1032138(42183369, -), CAediting_1032139(42183374, -), CAediting_1032140(42183375, -), CAediting_1032141(42185276, -), CAediting_1032142(42185294, -), CAediting_1032143(42185347, -), CAediting_1032144(42186333, -), CAediting_1032145(42186346, -), CAediting_1032146(42186358, -), CAediting_1032147(42186359, -), CAediting_1032148(42186379, -), CAediting_1032149(42186384, -), CAediting_1032150(42186397, -), CAediting_1032151(42186419, -), CAediting_1032152(42189484, -), CAediting_1032153(42189485, -), CAediting_1032154(42189494, -), CAediting_1032155(42189537, -), CAediting_1032156(42189541, -), CAediting_1032157(42189563, -), CAediting_1032158(42189566, -), CAediting_1032159(42189605, -), CAediting_1032160(42189607, -), CAediting_1032161(42189617, -), CAediting_1032162(42189629, -), CAediting_1032163(42189646, -), CAediting_1032164(42189666, -), CAediting_1032165(42189820, -), CAediting_1032166(42189832, -), CAediting_1032167(42189841, -), CAediting_1032168(42189896, -), CAediting_1032169(42189901, -), CAediting_1032170(42189904, -), CAediting_1032171(42189929, -), CAediting_1032172(42189938, -), CAediting_1032173(42189942, -), CAediting_1032174(42189952, -), CAediting_1032175(42189974, -), CAediting_1032176(42189978, -), CAediting_1032177(42189981, -), CAediting_1032178(42189988, -), CAediting_1032179(42190003, -), CAediting_1032180(42190014, -), CAediting_1032181(42190016, -), CAediting_1032182(42190018, -), CAediting_1032183(42190019, -), CAediting_1032184(42190028, -), CAediting_1032185(42190033, -), CAediting_1032186(42190066, -), CAediting_1032187(42190091, -), CAediting_1032188(42190094, -), CAediting_1032189(42192846, -), CAediting_1032190(42192944, -), CAediting_1032191(42192959, -), CAediting_1032192(42194208, -), CAediting_1032193(42194289, -), CAediting_1032194(42194325, -), CAediting_1032195(42194381, -), CAediting_1032196(42194435, -), CAediting_1032197(42194440, -), CAediting_1032198(42194466, -), CAediting_1032199(42194657, -), CAediting_1032200(42194702, -), CAediting_1032201(42195316, -), CAediting_1032202(42197470, -), CAediting_1032203(42197547, -), CAediting_1032204(42198411, -), CAediting_1032205(42198472, -), CAediting_1032206(42198483, -), CAediting_1032207(42198488, -), CAediting_1032208(42198491, -), CAediting_1032209(42198515, -), CAediting_1032210(42198554, -), CAediting_1032211(42198577, -), CAediting_1032212(42198590, -), CAediting_1032213(42204538, -),

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RNA editing positional annotations for VPS39 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1032049	chr15_42170367_-	ncRNA_intronic
CAediting_1032050	chr15_42170375_-	ncRNA_intronic
CAediting_1032051	chr15_42170381_-	ncRNA_intronic
CAediting_1032052	chr15_42170391_-	ncRNA_intronic
CAediting_1032053	chr15_42170403_-	ncRNA_intronic
CAediting_1032054	chr15_42170408_-	ncRNA_intronic
CAediting_1032055	chr15_42170416_-	ncRNA_intronic
CAediting_1032056	chr15_42170420_-	ncRNA_intronic
CAediting_1032057	chr15_42170421_-	ncRNA_intronic
CAediting_1032058	chr15_42170441_-	ncRNA_intronic
CAediting_1032059	chr15_42170451_-	ncRNA_intronic
CAediting_1032060	chr15_42170459_-	ncRNA_intronic
CAediting_1032061	chr15_42170800_-	ncRNA_intronic
CAediting_1032062	chr15_42170801_-	ncRNA_intronic
CAediting_1032063	chr15_42170806_-	ncRNA_intronic
CAediting_1032064	chr15_42170816_-	ncRNA_intronic
CAediting_1032065	chr15_42170817_-	ncRNA_intronic
CAediting_1032066	chr15_42170825_-	ncRNA_intronic
CAediting_1032067	chr15_42170829_-	ncRNA_intronic
CAediting_1032068	chr15_42170834_-	ncRNA_intronic
CAediting_1032069	chr15_42170837_-	ncRNA_intronic
CAediting_1032070	chr15_42170840_-	ncRNA_intronic
CAediting_1032071	chr15_42170843_-	ncRNA_intronic
CAediting_1032072	chr15_42170852_-	ncRNA_intronic
CAediting_1032073	chr15_42170853_-	ncRNA_intronic
CAediting_1032074	chr15_42170860_-	ncRNA_intronic
CAediting_1032075	chr15_42170864_-	ncRNA_intronic
CAediting_1032076	chr15_42170878_-	ncRNA_intronic
CAediting_1032077	chr15_42170883_-	ncRNA_intronic
CAediting_1032078	chr15_42170895_-	ncRNA_intronic
CAediting_1032079	chr15_42170911_-	ncRNA_intronic
CAediting_1032080	chr15_42170937_-	ncRNA_intronic
CAediting_1032081	chr15_42170938_-	ncRNA_intronic
CAediting_1032082	chr15_42170942_-	ncRNA_intronic
CAediting_1032083	chr15_42170952_-	ncRNA_intronic
CAediting_1032084	chr15_42170979_-	ncRNA_intronic
CAediting_1032085	chr15_42170984_-	ncRNA_intronic
CAediting_1032086	chr15_42170986_-	ncRNA_intronic
CAediting_1032087	chr15_42171016_-	ncRNA_intronic
CAediting_1032088	chr15_42171024_-	ncRNA_intronic
CAediting_1032089	chr15_42174178_-	ncRNA_intronic
CAediting_1032090	chr15_42177063_-	ncRNA_intronic
CAediting_1032091	chr15_42177068_-	ncRNA_intronic
CAediting_1032092	chr15_42178746_-	ncRNA_exonic
CAediting_1032093	chr15_42178767_-	ncRNA_exonic
CAediting_1032094	chr15_42178768_-	ncRNA_exonic
CAediting_1032095	chr15_42178773_-	ncRNA_exonic
CAediting_1032096	chr15_42178816_-	ncRNA_exonic
CAediting_1032097	chr15_42178818_-	ncRNA_exonic
CAediting_1032098	chr15_42178819_-	ncRNA_exonic
CAediting_1032099	chr15_42178822_-	ncRNA_exonic
CAediting_1032100	chr15_42178834_-	ncRNA_exonic
CAediting_1032101	chr15_42178848_-	ncRNA_exonic
CAediting_1032102	chr15_42178851_-	ncRNA_exonic
CAediting_1032103	chr15_42178867_-	ncRNA_exonic
CAediting_1032104	chr15_42178872_-	ncRNA_exonic
CAediting_1032105	chr15_42178883_-	ncRNA_exonic
CAediting_1032106	chr15_42178895_-	ncRNA_exonic
CAediting_1032107	chr15_42178924_-	ncRNA_exonic
CAediting_1032108	chr15_42178925_-	ncRNA_exonic
CAediting_1032109	chr15_42178938_-	ncRNA_exonic
CAediting_1032110	chr15_42178939_-	ncRNA_exonic
CAediting_1032111	chr15_42178945_-	ncRNA_exonic
CAediting_1032112	chr15_42178961_-	ncRNA_exonic
CAediting_1032113	chr15_42178985_-	ncRNA_exonic
CAediting_1032114	chr15_42179001_-	ncRNA_exonic
CAediting_1032115	chr15_42179007_-	ncRNA_exonic
CAediting_1032116	chr15_42179313_-	intronic
CAediting_1032117	chr15_42179325_-	intronic
CAediting_1032118	chr15_42179326_-	intronic
CAediting_1032119	chr15_42179380_-	intronic
CAediting_1032120	chr15_42179514_-	intronic
CAediting_1032121	chr15_42181873_-	intronic
CAediting_1032122	chr15_42181881_-	intronic
CAediting_1032123	chr15_42181915_-	intronic
CAediting_1032124	chr15_42181917_-	intronic
CAediting_1032125	chr15_42181927_-	intronic
CAediting_1032126	chr15_42181941_-	intronic
CAediting_1032127	chr15_42181981_-	intronic
CAediting_1032128	chr15_42181986_-	intronic
CAediting_1032129	chr15_42181987_-	intronic
CAediting_1032130	chr15_42183130_-	intronic
CAediting_1032131	chr15_42183131_-	intronic
CAediting_1032132	chr15_42183168_-	intronic
CAediting_1032133	chr15_42183218_-	intronic
CAediting_1032134	chr15_42183226_-	intronic
CAediting_1032135	chr15_42183249_-	intronic
CAediting_1032136	chr15_42183306_-	intronic
CAediting_1032137	chr15_42183329_-	intronic
CAediting_1032138	chr15_42183369_-	intronic
CAediting_1032139	chr15_42183374_-	intronic
CAediting_1032140	chr15_42183375_-	intronic
CAediting_1032141	chr15_42185276_-	ncRNA_intronic
CAediting_1032142	chr15_42185294_-	ncRNA_intronic
CAediting_1032143	chr15_42185347_-	ncRNA_intronic
CAediting_1032144	chr15_42186333_-	ncRNA_intronic
CAediting_1032145	chr15_42186346_-	ncRNA_intronic
CAediting_1032146	chr15_42186358_-	ncRNA_intronic
CAediting_1032147	chr15_42186359_-	ncRNA_intronic
CAediting_1032148	chr15_42186379_-	ncRNA_intronic
CAediting_1032149	chr15_42186384_-	ncRNA_intronic
CAediting_1032150	chr15_42186397_-	ncRNA_intronic
CAediting_1032151	chr15_42186419_-	ncRNA_intronic
CAediting_1032152	chr15_42189484_-	ncRNA_intronic
CAediting_1032153	chr15_42189485_-	ncRNA_intronic
CAediting_1032154	chr15_42189494_-	ncRNA_intronic
CAediting_1032155	chr15_42189537_-	ncRNA_intronic
CAediting_1032156	chr15_42189541_-	ncRNA_intronic
CAediting_1032157	chr15_42189563_-	ncRNA_intronic
CAediting_1032158	chr15_42189566_-	ncRNA_intronic
CAediting_1032159	chr15_42189605_-	ncRNA_intronic
CAediting_1032160	chr15_42189607_-	ncRNA_intronic
CAediting_1032161	chr15_42189617_-	ncRNA_intronic
CAediting_1032162	chr15_42189629_-	ncRNA_intronic
CAediting_1032163	chr15_42189646_-	ncRNA_intronic
CAediting_1032164	chr15_42189666_-	ncRNA_intronic
CAediting_1032165	chr15_42189820_-	ncRNA_intronic
CAediting_1032166	chr15_42189832_-	ncRNA_intronic
CAediting_1032167	chr15_42189841_-	ncRNA_intronic
CAediting_1032168	chr15_42189896_-	ncRNA_intronic
CAediting_1032169	chr15_42189901_-	ncRNA_intronic
CAediting_1032170	chr15_42189904_-	ncRNA_intronic
CAediting_1032171	chr15_42189929_-	ncRNA_intronic
CAediting_1032172	chr15_42189938_-	ncRNA_intronic
CAediting_1032173	chr15_42189942_-	ncRNA_intronic
CAediting_1032174	chr15_42189952_-	ncRNA_intronic
CAediting_1032175	chr15_42189974_-	ncRNA_intronic
CAediting_1032176	chr15_42189978_-	ncRNA_intronic
CAediting_1032177	chr15_42189981_-	ncRNA_intronic
CAediting_1032178	chr15_42189988_-	ncRNA_intronic
CAediting_1032179	chr15_42190003_-	ncRNA_intronic
CAediting_1032180	chr15_42190014_-	ncRNA_intronic
CAediting_1032181	chr15_42190016_-	ncRNA_intronic
CAediting_1032182	chr15_42190018_-	ncRNA_intronic
CAediting_1032183	chr15_42190019_-	ncRNA_intronic
CAediting_1032184	chr15_42190028_-	ncRNA_intronic
CAediting_1032185	chr15_42190033_-	ncRNA_intronic
CAediting_1032186	chr15_42190066_-	ncRNA_intronic
CAediting_1032187	chr15_42190091_-	ncRNA_intronic
CAediting_1032188	chr15_42190094_-	ncRNA_intronic
CAediting_1032189	chr15_42192846_-	ncRNA_intronic
CAediting_1032190	chr15_42192944_-	ncRNA_intronic
CAediting_1032191	chr15_42192959_-	ncRNA_intronic
CAediting_1032192	chr15_42194208_-	ncRNA_intronic
CAediting_1032193	chr15_42194289_-	ncRNA_intronic
CAediting_1032194	chr15_42194325_-	ncRNA_intronic
CAediting_1032195	chr15_42194381_-	ncRNA_intronic
CAediting_1032196	chr15_42194435_-	ncRNA_intronic
CAediting_1032197	chr15_42194440_-	ncRNA_intronic
CAediting_1032198	chr15_42194466_-	ncRNA_intronic
CAediting_1032199	chr15_42194657_-	ncRNA_intronic
CAediting_1032200	chr15_42194702_-	ncRNA_intronic
CAediting_1032201	chr15_42195316_-	ncRNA_intronic
CAediting_1032202	chr15_42197470_-	ncRNA_intronic
CAediting_1032203	chr15_42197547_-	ncRNA_intronic
CAediting_1032204	chr15_42198411_-	ncRNA_intronic
CAediting_1032205	chr15_42198472_-	ncRNA_intronic
CAediting_1032206	chr15_42198483_-	ncRNA_intronic
CAediting_1032207	chr15_42198488_-	ncRNA_intronic
CAediting_1032208	chr15_42198491_-	ncRNA_intronic
CAediting_1032209	chr15_42198515_-	ncRNA_intronic
CAediting_1032210	chr15_42198554_-	ncRNA_intronic
CAediting_1032211	chr15_42198577_-	ncRNA_intronic
CAediting_1032212	chr15_42198590_-	ncRNA_intronic
CAediting_1032213	chr15_42204538_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1032049	chr15_42170367_-	SINE	Alu	AluJr
CAediting_1032050	chr15_42170375_-	SINE	Alu	AluJr
CAediting_1032051	chr15_42170381_-	SINE	Alu	AluJr
CAediting_1032052	chr15_42170391_-	SINE	Alu	AluJr
CAediting_1032053	chr15_42170403_-	SINE	Alu	AluJr
CAediting_1032054	chr15_42170408_-	SINE	Alu	AluJr
CAediting_1032055	chr15_42170416_-	SINE	Alu	AluJr
CAediting_1032056	chr15_42170420_-	SINE	Alu	AluJr
CAediting_1032057	chr15_42170421_-	SINE	Alu	AluJr
CAediting_1032058	chr15_42170441_-	SINE	Alu	AluJr
CAediting_1032059	chr15_42170451_-	SINE	Alu	AluJr
CAediting_1032060	chr15_42170459_-	SINE	Alu	AluJr
CAediting_1032061	chr15_42170800_-	SINE	Alu	AluJb
CAediting_1032062	chr15_42170801_-	SINE	Alu	AluJb
CAediting_1032063	chr15_42170806_-	SINE	Alu	AluJb
CAediting_1032064	chr15_42170816_-	SINE	Alu	AluJb
CAediting_1032065	chr15_42170817_-	SINE	Alu	AluJb
CAediting_1032066	chr15_42170825_-	SINE	Alu	AluJb
CAediting_1032067	chr15_42170829_-	SINE	Alu	AluJb
CAediting_1032068	chr15_42170834_-	SINE	Alu	AluJb
CAediting_1032069	chr15_42170837_-	SINE	Alu	AluJb
CAediting_1032070	chr15_42170840_-	SINE	Alu	AluJb
CAediting_1032071	chr15_42170843_-	SINE	Alu	AluJb
CAediting_1032072	chr15_42170852_-	SINE	Alu	AluJb
CAediting_1032073	chr15_42170853_-	SINE	Alu	AluJb
CAediting_1032074	chr15_42170860_-	SINE	Alu	AluJb
CAediting_1032075	chr15_42170864_-	SINE	Alu	AluJb
CAediting_1032076	chr15_42170878_-	SINE	Alu	AluJb
CAediting_1032077	chr15_42170883_-	SINE	Alu	AluJb
CAediting_1032078	chr15_42170895_-	SINE	Alu	AluJb
CAediting_1032079	chr15_42170911_-	SINE	Alu	AluJb
CAediting_1032080	chr15_42170937_-	SINE	Alu	AluJb
CAediting_1032081	chr15_42170938_-	SINE	Alu	AluJb
CAediting_1032082	chr15_42170942_-	SINE	Alu	AluJb
CAediting_1032083	chr15_42170952_-	SINE	Alu	AluJb
CAediting_1032084	chr15_42170979_-	SINE	Alu	AluJb
CAediting_1032085	chr15_42170984_-	SINE	Alu	AluJb
CAediting_1032086	chr15_42170986_-	SINE	Alu	AluJb
CAediting_1032087	chr15_42171016_-	SINE	Alu	AluJb
CAediting_1032088	chr15_42171024_-	SINE	Alu	AluJb
CAediting_1032089	chr15_42174178_-	SINE	Alu	AluSc8
CAediting_1032090	chr15_42177063_-	SINE	Alu	AluJb
CAediting_1032091	chr15_42177068_-	SINE	Alu	AluJb
CAediting_1032092	chr15_42178746_-	SINE	Alu	AluJr
CAediting_1032093	chr15_42178767_-	SINE	Alu	AluJr
CAediting_1032094	chr15_42178768_-	SINE	Alu	AluJr
CAediting_1032095	chr15_42178773_-	SINE	Alu	AluJr
CAediting_1032096	chr15_42178816_-	SINE	Alu	AluJr
CAediting_1032097	chr15_42178818_-	SINE	Alu	AluJr
CAediting_1032098	chr15_42178819_-	SINE	Alu	AluJr
CAediting_1032099	chr15_42178822_-	SINE	Alu	AluJr
CAediting_1032100	chr15_42178834_-	SINE	Alu	AluJr
CAediting_1032101	chr15_42178848_-	SINE	Alu	AluJr
CAediting_1032102	chr15_42178851_-	SINE	Alu	AluJr
CAediting_1032103	chr15_42178867_-	SINE	Alu	AluJr
CAediting_1032104	chr15_42178872_-	SINE	Alu	AluJr
CAediting_1032105	chr15_42178883_-	SINE	Alu	AluJr
CAediting_1032106	chr15_42178895_-	SINE	Alu	AluJr
CAediting_1032107	chr15_42178924_-	SINE	Alu	AluJr
CAediting_1032108	chr15_42178925_-	SINE	Alu	AluJr
CAediting_1032109	chr15_42178938_-	SINE	Alu	AluJr
CAediting_1032110	chr15_42178939_-	SINE	Alu	AluJr
CAediting_1032111	chr15_42178945_-	SINE	Alu	AluJr
CAediting_1032112	chr15_42178961_-	SINE	Alu	AluJr
CAediting_1032113	chr15_42178985_-	SINE	Alu	AluJr
CAediting_1032114	chr15_42179001_-	SINE	Alu	AluJr
CAediting_1032115	chr15_42179007_-	SINE	Alu	AluJr
CAediting_1032116	chr15_42179313_-	SINE	Alu	AluY
CAediting_1032117	chr15_42179325_-	SINE	Alu	AluY
CAediting_1032118	chr15_42179326_-	SINE	Alu	AluY
CAediting_1032119	chr15_42179380_-	SINE	Alu	AluY
CAediting_1032120	chr15_42179514_-	SINE	Alu	AluY
CAediting_1032121	chr15_42181873_-	SINE	Alu	AluJb
CAediting_1032122	chr15_42181881_-	SINE	Alu	AluJb
CAediting_1032123	chr15_42181915_-	SINE	Alu	AluJb
CAediting_1032124	chr15_42181917_-	SINE	Alu	AluJb
CAediting_1032125	chr15_42181927_-	SINE	Alu	AluJb
CAediting_1032126	chr15_42181941_-	SINE	Alu	AluJb
CAediting_1032127	chr15_42181981_-	SINE	Alu	AluJb
CAediting_1032128	chr15_42181986_-	SINE	Alu	AluJb
CAediting_1032129	chr15_42181987_-	SINE	Alu	AluJb
CAediting_1032130	chr15_42183130_-	SINE	Alu	AluSx3
CAediting_1032131	chr15_42183131_-	SINE	Alu	AluSx3
CAediting_1032132	chr15_42183168_-	SINE	Alu	AluSx3
CAediting_1032133	chr15_42183218_-	SINE	Alu	AluSx3
CAediting_1032134	chr15_42183226_-	SINE	Alu	AluSx3
CAediting_1032135	chr15_42183249_-	SINE	Alu	AluSx3
CAediting_1032136	chr15_42183306_-	SINE	Alu	AluSx3
CAediting_1032137	chr15_42183329_-	SINE	Alu	AluSx3
CAediting_1032138	chr15_42183369_-	SINE	Alu	AluSx3
CAediting_1032139	chr15_42183374_-	SINE	Alu	AluSx3
CAediting_1032140	chr15_42183375_-	SINE	Alu	AluSx3
CAediting_1032141	chr15_42185276_-	SINE	Alu	AluSc8
CAediting_1032142	chr15_42185294_-	SINE	Alu	AluSc8
CAediting_1032143	chr15_42185347_-	SINE	Alu	AluSc8
CAediting_1032144	chr15_42186333_-	SINE	Alu	AluJo
CAediting_1032145	chr15_42186346_-	SINE	Alu	AluJo
CAediting_1032146	chr15_42186358_-	SINE	Alu	AluJo
CAediting_1032147	chr15_42186359_-	SINE	Alu	AluJo
CAediting_1032148	chr15_42186379_-	SINE	Alu	AluJo
CAediting_1032149	chr15_42186384_-	SINE	Alu	AluJo
CAediting_1032150	chr15_42186397_-	SINE	Alu	AluJo
CAediting_1032151	chr15_42186419_-	SINE	Alu	AluJo
CAediting_1032152	chr15_42189484_-	SINE	Alu	AluSx1
CAediting_1032153	chr15_42189485_-	SINE	Alu	AluSx1
CAediting_1032154	chr15_42189494_-	SINE	Alu	AluSx1
CAediting_1032155	chr15_42189537_-	SINE	Alu	AluSx1
CAediting_1032156	chr15_42189541_-	SINE	Alu	AluSx1
CAediting_1032157	chr15_42189563_-	SINE	Alu	AluSx1
CAediting_1032158	chr15_42189566_-	SINE	Alu	AluSx1
CAediting_1032159	chr15_42189605_-	SINE	Alu	AluSx1
CAediting_1032160	chr15_42189607_-	SINE	Alu	AluSx1
CAediting_1032161	chr15_42189617_-	SINE	Alu	AluSx1
CAediting_1032162	chr15_42189629_-	SINE	Alu	AluSx1
CAediting_1032163	chr15_42189646_-	SINE	Alu	AluSx1
CAediting_1032164	chr15_42189666_-	SINE	Alu	AluSx1
CAediting_1032165	chr15_42189820_-	SINE	Alu	AluJo
CAediting_1032166	chr15_42189832_-	SINE	Alu	AluJo
CAediting_1032167	chr15_42189841_-	SINE	Alu	AluJo
CAediting_1032168	chr15_42189896_-	SINE	Alu	AluJo
CAediting_1032169	chr15_42189901_-	SINE	Alu	AluJo
CAediting_1032170	chr15_42189904_-	SINE	Alu	AluJo
CAediting_1032171	chr15_42189929_-	SINE	Alu	AluJo
CAediting_1032172	chr15_42189938_-	SINE	Alu	AluJo
CAediting_1032173	chr15_42189942_-	SINE	Alu	AluJo
CAediting_1032174	chr15_42189952_-	SINE	Alu	AluJo
CAediting_1032175	chr15_42189974_-	SINE	Alu	AluJo
CAediting_1032176	chr15_42189978_-	SINE	Alu	AluJo
CAediting_1032177	chr15_42189981_-	SINE	Alu	AluJo
CAediting_1032178	chr15_42189988_-	SINE	Alu	AluJo
CAediting_1032179	chr15_42190003_-	SINE	Alu	AluJo
CAediting_1032180	chr15_42190014_-	SINE	Alu	AluJo
CAediting_1032181	chr15_42190016_-	SINE	Alu	AluJo
CAediting_1032182	chr15_42190018_-	SINE	Alu	AluJo
CAediting_1032183	chr15_42190019_-	SINE	Alu	AluJo
CAediting_1032184	chr15_42190028_-	SINE	Alu	AluJo
CAediting_1032185	chr15_42190033_-	SINE	Alu	AluJo
CAediting_1032186	chr15_42190066_-	SINE	Alu	AluJo
CAediting_1032187	chr15_42190091_-	SINE	Alu	AluJo
CAediting_1032188	chr15_42190094_-	SINE	Alu	AluJo
CAediting_1032189	chr15_42192846_-	SINE	Alu	AluSx
CAediting_1032190	chr15_42192944_-	SINE	Alu	AluSx
CAediting_1032191	chr15_42192959_-	SINE	Alu	AluSx
CAediting_1032192	chr15_42194208_-	SINE	Alu	AluSq2
CAediting_1032193	chr15_42194289_-	SINE	Alu	AluSq2
CAediting_1032194	chr15_42194325_-	SINE	Alu	AluSq2
CAediting_1032195	chr15_42194381_-	SINE	Alu	AluSq2
CAediting_1032196	chr15_42194435_-	SINE	Alu	AluSq2
CAediting_1032197	chr15_42194440_-	SINE	Alu	AluSq2
CAediting_1032198	chr15_42194466_-	SINE	Alu	AluSq2
CAediting_1032199	chr15_42194657_-	SINE	Alu	AluJr
CAediting_1032200	chr15_42194702_-	SINE	Alu	AluJr
CAediting_1032201	chr15_42195316_-	SINE	Alu	AluJr
CAediting_1032202	chr15_42197470_-	SINE	Alu	AluJb
CAediting_1032203	chr15_42197547_-	SINE	Alu	AluJb
CAediting_1032204	chr15_42198411_-	SINE	Alu	AluJr
CAediting_1032205	chr15_42198472_-	SINE	Alu	AluJr
CAediting_1032206	chr15_42198483_-	SINE	Alu	AluJr
CAediting_1032207	chr15_42198488_-	SINE	Alu	AluJr
CAediting_1032208	chr15_42198491_-	SINE	Alu	AluJr
CAediting_1032209	chr15_42198515_-	SINE	Alu	AluJr
CAediting_1032210	chr15_42198554_-	SINE	Alu	AluJr
CAediting_1032211	chr15_42198577_-	SINE	Alu	AluJr
CAediting_1032212	chr15_42198590_-	SINE	Alu	AluJr
CAediting_1032213	chr15_42204538_-	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for VPS39

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166887.14.VPS39.

Correlation between RNA A-to-I editing and PSI for ENSG00000166887.14.VPS39.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for VPS39

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for VPS39

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for VPS39

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000166887.14	ENST00000318006	hsa-miR-605-3p	42158808	42158814	7mer-m8	42158807	42158824	146	-16.66
CAediting_77128	chr1_85133844_+	ENSG00000166887.14	ENST00000318006	hsa-miR-4423-3p	42159348	42159354	7mer-m8	42159347	42159367	155	-19.02
CAediting_1399425	chr20_1392958_-	ENSG00000166887.14	ENST00000318006	hsa-miR-6869-5p	42160168	42160174	7mer-m8	42160167	42160188	151	-23.59
CAediting_524911	chr7_5495852_-	ENSG00000166887.14	ENST00000318006	hsa-miR-589-3p	42159797	42159803	7mer-m8	42159796	42159820	153	-20

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000166887.14	ENST00000318006	hsa-miR-320e	42159724	42159730	7mer-m8	42159723	42159740	151	-18.33
CAediting_1368054	chr19_46709310_-	ENSG00000166887.14	ENST00000318006	hsa-miR-320e	42159041	42159047	7mer-m8	42159040	42159056	145	-14.2
CAediting_1368054	chr19_46709310_-	ENSG00000166887.14	ENST00000318006	hsa-miR-320e	42160572	42160578	7mer-m8	42160571	42160591	141	-15.65
CAediting_1054808	chr15_66496985_-	ENSG00000166887.14	ENST00000318006	hsa-miR-4512	42159975	42159981	7mer-m8	42159974	42159994	141	-19.47
CAediting_1054808	chr15_66496985_-	ENSG00000166887.14	ENST00000318006	hsa-miR-4512	42159791	42159796	6mer	42159790	42159815	143	-25.34
CAediting_748296	chr10_51299626_+	ENSG00000166887.14	ENST00000318006	hsa-miR-605-3p	42158952	42158958	7mer-m8	42158951	42158972	140	-10.88

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for VPS39

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for VPS39

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for VPS39

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
ESCA	clinical_stage	CAediting_1032072	chr15_42170852_-	0.00480271051123394	-0.649201940616187

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Relation with survival for VPS39

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for VPS39

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for VPS39

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
VPS39	C0006142	Malignant neoplasm of breast	1	CTD_human
VPS39	C0036341	Schizophrenia	1	CTD_human
VPS39	C0678222	Breast Carcinoma	1	CTD_human
VPS39	C1257931	Mammary Neoplasms, Human	1	CTD_human
VPS39	C1458155	Mammary Neoplasms	1	CTD_human
VPS39	C4704874	Mammary Carcinoma, Human	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene