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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SZT2 (CAeditome ID:23334)

Gene summary for SZT2

check button Gene summary
Gene informationGene symbol

SZT2

Gene ID

23334

Gene nameSZT2 subunit of KICSTOR complex
SynonymsC1orf84|DEE18|EIEE18|KIAA0467|KICS1|SZT2A|SZT2B
Cytomap

1p34.2

Type of geneprotein-coding
DescriptionKICSTOR complex protein SZT2SZT2 subunit KICSTOR complexSZT2, KICSTOR complex subunitseizure threshold 2 protein homolog
Modification date20210518
UniProtAcc

Q5T011

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SZT2

GO:0005765

KICSTOR complex protein SZT2

28199315

SZT2

GO:0140007

KICSTOR complex protein SZT2

28199306


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RNA A-to-I events for SZT2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000198198.12

check button RNA A-to-I editing events in Cancer.
CAediting_53490(43391194, +), CAediting_53491(43392544, +), CAediting_53492(43394757, +), CAediting_53493(43394758, +), CAediting_53494(43394773, +), CAediting_53495(43394798, +), CAediting_53496(43395428, +), CAediting_53497(43397204, +), CAediting_53498(43397334, +), CAediting_53499(43397342, +), CAediting_53500(43400008, +), CAediting_53501(43400072, +), CAediting_53502(43400104, +), CAediting_53503(43400999, +), CAediting_53504(43403972, +), CAediting_53505(43405129, +), CAediting_53506(43406287, +), CAediting_53507(43406332, +), CAediting_53508(43406333, +), CAediting_53509(43406360, +), CAediting_53510(43406372, +), CAediting_53511(43407248, +), CAediting_53512(43407249, +), CAediting_53513(43407266, +), CAediting_53514(43407270, +), CAediting_53515(43407275, +), CAediting_53516(43407284, +), CAediting_53517(43407286, +), CAediting_53518(43407295, +), CAediting_53519(43407327, +), CAediting_53520(43407328, +), CAediting_53521(43407340, +), CAediting_53522(43407341, +), CAediting_53523(43407342, +), CAediting_53524(43407343, +), CAediting_53525(43407395, +), CAediting_53526(43407396, +), CAediting_53527(43407448, +), CAediting_53528(43407466, +), CAediting_53529(43407504, +), CAediting_53530(43407572, +), CAediting_53531(43407573, +), CAediting_53532(43407578, +), CAediting_53533(43407642, +), CAediting_53534(43408283, +), CAediting_53535(43408287, +), CAediting_53536(43408295, +), CAediting_53537(43408307, +), CAediting_53538(43408321, +), CAediting_53539(43408325, +), CAediting_53540(43408331, +), CAediting_53541(43408333, +), CAediting_53542(43408364, +), CAediting_53543(43408375, +), CAediting_53544(43408380, +), CAediting_53545(43408389, +), CAediting_53546(43408396, +), CAediting_53547(43408402, +), CAediting_53548(43408404, +), CAediting_53549(43408449, +), CAediting_53550(43408455, +), CAediting_53551(43408486, +), CAediting_53552(43408487, +), CAediting_53553(43408488, +), CAediting_53554(43408495, +), CAediting_53555(43408500, +), CAediting_53556(43408501, +), CAediting_53557(43408513, +), CAediting_53558(43408518, +), CAediting_53559(43408527, +), CAediting_53560(43408540, +), CAediting_53561(43408549, +), CAediting_53562(43409953, +), CAediting_53563(43410275, +), CAediting_53564(43410281, +), CAediting_53565(43410289, +), CAediting_53566(43410291, +), CAediting_53567(43410298, +), CAediting_53568(43410304, +), CAediting_53569(43410319, +), CAediting_53570(43410324, +), CAediting_53571(43410333, +), CAediting_53572(43410341, +), CAediting_53573(43410350, +), CAediting_53574(43410365, +), CAediting_53575(43410375, +), CAediting_53576(43410380, +), CAediting_53577(43410386, +), CAediting_53578(43410390, +), CAediting_53579(43410400, +), CAediting_53580(43410404, +), CAediting_53581(43410408, +), CAediting_53582(43410418, +), CAediting_53583(43410424, +), CAediting_53584(43410434, +), CAediting_53585(43410435, +), CAediting_53586(43410440, +), CAediting_53587(43410444, +), CAediting_53588(43410461, +), CAediting_53589(43410475, +), CAediting_53590(43410476, +), CAediting_53591(43410487, +), CAediting_53592(43410496, +), CAediting_53593(43410500, +), CAediting_53594(43410505, +), CAediting_53595(43410543, +), CAediting_53596(43411859, +), CAediting_53597(43411882, +), CAediting_53598(43411977, +), CAediting_53599(43412009, +), CAediting_53600(43412014, +), CAediting_53601(43412039, +), CAediting_53602(43412040, +), CAediting_53603(43412052, +), CAediting_53604(43412061, +), CAediting_53605(43412070, +), CAediting_53606(43412320, +), CAediting_53607(43412375, +), CAediting_53608(43412395, +), CAediting_53609(43412396, +), CAediting_53610(43412413, +), CAediting_53611(43412425, +), CAediting_53612(43412430, +), CAediting_53613(43412435, +), CAediting_53614(43412455, +), CAediting_53615(43412459, +), CAediting_53616(43412460, +), CAediting_53617(43412466, +), CAediting_53618(43412477, +), CAediting_53619(43412484, +), CAediting_53620(43412495, +), CAediting_53621(43412496, +), CAediting_53622(43412521, +), CAediting_53623(43412547, +), CAediting_53624(43412548, +), CAediting_53625(43412560, +), CAediting_53626(43412564, +), CAediting_53627(43413086, +), CAediting_53628(43413138, +), CAediting_53629(43413140, +), CAediting_53630(43413146, +), CAediting_53631(43413147, +), CAediting_53632(43413196, +), CAediting_53633(43413197, +), CAediting_53634(43413206, +), CAediting_53635(43413207, +), CAediting_53636(43413218, +), CAediting_53637(43413222, +), CAediting_53638(43413223, +), CAediting_53639(43413224, +), CAediting_53640(43413225, +), CAediting_53641(43413227, +), CAediting_53642(43413230, +), CAediting_53643(43413232, +), CAediting_53644(43413236, +), CAediting_53645(43413252, +), CAediting_53646(43413254, +), CAediting_53647(43413262, +), CAediting_53648(43413263, +), CAediting_53649(43413272, +), CAediting_53650(43413285, +), CAediting_53651(43413289, +), CAediting_53652(43413294, +), CAediting_53653(43413302, +), CAediting_53654(43413314, +), CAediting_53655(43413327, +), CAediting_53656(43413364, +), CAediting_53657(43413366, +), CAediting_53658(43413369, +), CAediting_53659(43413370, +), CAediting_53660(43413521, +), CAediting_53661(43413530, +), CAediting_53662(43413544, +), CAediting_53663(43414265, +), CAediting_53664(43414486, +), CAediting_53665(43414560, +), CAediting_53666(43417963, +), CAediting_53667(43433672, +), CAediting_53668(43437988, +), CAediting_53669(43437991, +), CAediting_53670(43437994, +), CAediting_53671(43437998, +), CAediting_53672(43438051, +), CAediting_53673(43438362, +), CAediting_53674(43438370, +), CAediting_53675(43438409, +), CAediting_53676(43444335, +),

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RNA editing positional annotations for SZT2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_53506chr1_43406287_+nonsynonymous SNVENST00000372450.7c.A497Gp.Q166RTBD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_53490chr1_43391194_+ncRNA_intronic
CAediting_53491chr1_43392544_+ncRNA_intronic
CAediting_53492chr1_43394757_+ncRNA_intronic
CAediting_53493chr1_43394758_+ncRNA_intronic
CAediting_53494chr1_43394773_+ncRNA_intronic
CAediting_53495chr1_43394798_+ncRNA_intronic
CAediting_53496chr1_43395428_+ncRNA_intronic
CAediting_53497chr1_43397204_+ncRNA_intronic
CAediting_53498chr1_43397334_+ncRNA_intronic
CAediting_53499chr1_43397342_+ncRNA_intronic
CAediting_53500chr1_43400008_+ncRNA_intronic
CAediting_53501chr1_43400072_+ncRNA_intronic
CAediting_53502chr1_43400104_+ncRNA_intronic
CAediting_53503chr1_43400999_+ncRNA_intronic
CAediting_53504chr1_43403972_+ncRNA_intronic
CAediting_53505chr1_43405129_+ncRNA_intronic
CAediting_53506chr1_43406287_+exonic
CAediting_53507chr1_43406332_+ncRNA_intronic
CAediting_53508chr1_43406333_+ncRNA_intronic
CAediting_53509chr1_43406360_+ncRNA_intronic
CAediting_53510chr1_43406372_+ncRNA_intronic
CAediting_53511chr1_43407248_+ncRNA_intronic
CAediting_53512chr1_43407249_+ncRNA_intronic
CAediting_53513chr1_43407266_+ncRNA_intronic
CAediting_53514chr1_43407270_+ncRNA_intronic
CAediting_53515chr1_43407275_+ncRNA_intronic
CAediting_53516chr1_43407284_+ncRNA_intronic
CAediting_53517chr1_43407286_+ncRNA_intronic
CAediting_53518chr1_43407295_+ncRNA_intronic
CAediting_53519chr1_43407327_+ncRNA_intronic
CAediting_53520chr1_43407328_+ncRNA_intronic
CAediting_53521chr1_43407340_+ncRNA_intronic
CAediting_53522chr1_43407341_+ncRNA_intronic
CAediting_53523chr1_43407342_+ncRNA_intronic
CAediting_53524chr1_43407343_+ncRNA_intronic
CAediting_53525chr1_43407395_+ncRNA_intronic
CAediting_53526chr1_43407396_+ncRNA_intronic
CAediting_53527chr1_43407448_+ncRNA_intronic
CAediting_53528chr1_43407466_+ncRNA_intronic
CAediting_53529chr1_43407504_+ncRNA_intronic
CAediting_53530chr1_43407572_+ncRNA_intronic
CAediting_53531chr1_43407573_+ncRNA_intronic
CAediting_53532chr1_43407578_+ncRNA_intronic
CAediting_53533chr1_43407642_+ncRNA_intronic
CAediting_53534chr1_43408283_+ncRNA_intronic
CAediting_53535chr1_43408287_+ncRNA_intronic
CAediting_53536chr1_43408295_+ncRNA_intronic
CAediting_53537chr1_43408307_+ncRNA_intronic
CAediting_53538chr1_43408321_+ncRNA_intronic
CAediting_53539chr1_43408325_+ncRNA_intronic
CAediting_53540chr1_43408331_+ncRNA_intronic
CAediting_53541chr1_43408333_+ncRNA_intronic
CAediting_53542chr1_43408364_+ncRNA_intronic
CAediting_53543chr1_43408375_+ncRNA_intronic
CAediting_53544chr1_43408380_+ncRNA_intronic
CAediting_53545chr1_43408389_+ncRNA_intronic
CAediting_53546chr1_43408396_+ncRNA_intronic
CAediting_53547chr1_43408402_+ncRNA_intronic
CAediting_53548chr1_43408404_+ncRNA_intronic
CAediting_53549chr1_43408449_+ncRNA_intronic
CAediting_53550chr1_43408455_+ncRNA_intronic
CAediting_53551chr1_43408486_+ncRNA_intronic
CAediting_53552chr1_43408487_+ncRNA_intronic
CAediting_53553chr1_43408488_+ncRNA_intronic
CAediting_53554chr1_43408495_+ncRNA_intronic
CAediting_53555chr1_43408500_+ncRNA_intronic
CAediting_53556chr1_43408501_+ncRNA_intronic
CAediting_53557chr1_43408513_+ncRNA_intronic
CAediting_53558chr1_43408518_+ncRNA_intronic
CAediting_53559chr1_43408527_+ncRNA_intronic
CAediting_53560chr1_43408540_+ncRNA_intronic
CAediting_53561chr1_43408549_+ncRNA_intronic
CAediting_53562chr1_43409953_+ncRNA_exonic
CAediting_53563chr1_43410275_+ncRNA_exonic
CAediting_53564chr1_43410281_+ncRNA_exonic
CAediting_53565chr1_43410289_+ncRNA_exonic
CAediting_53566chr1_43410291_+ncRNA_exonic
CAediting_53567chr1_43410298_+ncRNA_exonic
CAediting_53568chr1_43410304_+ncRNA_exonic
CAediting_53569chr1_43410319_+ncRNA_exonic
CAediting_53570chr1_43410324_+ncRNA_exonic
CAediting_53571chr1_43410333_+ncRNA_exonic
CAediting_53572chr1_43410341_+ncRNA_exonic
CAediting_53573chr1_43410350_+ncRNA_exonic
CAediting_53574chr1_43410365_+ncRNA_exonic
CAediting_53575chr1_43410375_+ncRNA_exonic
CAediting_53576chr1_43410380_+ncRNA_exonic
CAediting_53577chr1_43410386_+ncRNA_exonic
CAediting_53578chr1_43410390_+ncRNA_exonic
CAediting_53579chr1_43410400_+ncRNA_exonic
CAediting_53580chr1_43410404_+ncRNA_exonic
CAediting_53581chr1_43410408_+ncRNA_exonic
CAediting_53582chr1_43410418_+ncRNA_exonic
CAediting_53583chr1_43410424_+ncRNA_exonic
CAediting_53584chr1_43410434_+ncRNA_exonic
CAediting_53585chr1_43410435_+ncRNA_exonic
CAediting_53586chr1_43410440_+ncRNA_exonic
CAediting_53587chr1_43410444_+ncRNA_exonic
CAediting_53588chr1_43410461_+ncRNA_exonic
CAediting_53589chr1_43410475_+ncRNA_exonic
CAediting_53590chr1_43410476_+ncRNA_exonic
CAediting_53591chr1_43410487_+ncRNA_exonic
CAediting_53592chr1_43410496_+ncRNA_exonic
CAediting_53593chr1_43410500_+ncRNA_exonic
CAediting_53594chr1_43410505_+ncRNA_exonic
CAediting_53595chr1_43410543_+ncRNA_exonic
CAediting_53596chr1_43411859_+intronic
CAediting_53597chr1_43411882_+intronic
CAediting_53598chr1_43411977_+intronic
CAediting_53599chr1_43412009_+UTR3
CAediting_53600chr1_43412014_+UTR3
CAediting_53601chr1_43412039_+UTR3
CAediting_53602chr1_43412040_+UTR3
CAediting_53603chr1_43412052_+UTR3
CAediting_53604chr1_43412061_+UTR3
CAediting_53605chr1_43412070_+UTR3
CAediting_53606chr1_43412320_+UTR3
CAediting_53607chr1_43412375_+UTR3
CAediting_53608chr1_43412395_+UTR3
CAediting_53609chr1_43412396_+UTR3
CAediting_53610chr1_43412413_+UTR3
CAediting_53611chr1_43412425_+UTR3
CAediting_53612chr1_43412430_+UTR3
CAediting_53613chr1_43412435_+UTR3
CAediting_53614chr1_43412455_+UTR3
CAediting_53615chr1_43412459_+UTR3
CAediting_53616chr1_43412460_+UTR3
CAediting_53617chr1_43412466_+UTR3
CAediting_53618chr1_43412477_+UTR3
CAediting_53619chr1_43412484_+UTR3
CAediting_53620chr1_43412495_+UTR3
CAediting_53621chr1_43412496_+UTR3
CAediting_53622chr1_43412521_+UTR3
CAediting_53623chr1_43412547_+UTR3
CAediting_53624chr1_43412548_+UTR3
CAediting_53625chr1_43412560_+UTR3
CAediting_53626chr1_43412564_+UTR3
CAediting_53627chr1_43413086_+intronic
CAediting_53628chr1_43413138_+intronic
CAediting_53629chr1_43413140_+intronic
CAediting_53630chr1_43413146_+intronic
CAediting_53631chr1_43413147_+intronic
CAediting_53632chr1_43413196_+intronic
CAediting_53633chr1_43413197_+intronic
CAediting_53634chr1_43413206_+intronic
CAediting_53635chr1_43413207_+intronic
CAediting_53636chr1_43413218_+intronic
CAediting_53637chr1_43413222_+intronic
CAediting_53638chr1_43413223_+intronic
CAediting_53639chr1_43413224_+intronic
CAediting_53640chr1_43413225_+intronic
CAediting_53641chr1_43413227_+intronic
CAediting_53642chr1_43413230_+intronic
CAediting_53643chr1_43413232_+intronic
CAediting_53644chr1_43413236_+intronic
CAediting_53645chr1_43413252_+intronic
CAediting_53646chr1_43413254_+intronic
CAediting_53647chr1_43413262_+intronic
CAediting_53648chr1_43413263_+intronic
CAediting_53649chr1_43413272_+intronic
CAediting_53650chr1_43413285_+intronic
CAediting_53651chr1_43413289_+intronic
CAediting_53652chr1_43413294_+intronic
CAediting_53653chr1_43413302_+intronic
CAediting_53654chr1_43413314_+intronic
CAediting_53655chr1_43413327_+intronic
CAediting_53656chr1_43413364_+intronic
CAediting_53657chr1_43413366_+intronic
CAediting_53658chr1_43413369_+intronic
CAediting_53659chr1_43413370_+intronic
CAediting_53660chr1_43413521_+intronic
CAediting_53661chr1_43413530_+intronic
CAediting_53662chr1_43413544_+intronic
CAediting_53663chr1_43414265_+intronic
CAediting_53664chr1_43414486_+intronic
CAediting_53665chr1_43414560_+intronic
CAediting_53666chr1_43417963_+intronic
CAediting_53667chr1_43433672_+intronic
CAediting_53668chr1_43437988_+ncRNA_exonic
CAediting_53669chr1_43437991_+ncRNA_exonic
CAediting_53670chr1_43437994_+ncRNA_exonic
CAediting_53671chr1_43437998_+ncRNA_exonic
CAediting_53672chr1_43438051_+ncRNA_exonic
CAediting_53673chr1_43438362_+ncRNA_intronic
CAediting_53674chr1_43438370_+ncRNA_intronic
CAediting_53675chr1_43438409_+ncRNA_intronic
CAediting_53676chr1_43444335_+intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_53490chr1_43391194_+SINEAluAluSp
CAediting_53491chr1_43392544_+SINEAluAluY
CAediting_53492chr1_43394757_+SINEAluAluSp
CAediting_53493chr1_43394758_+SINEAluAluSp
CAediting_53494chr1_43394773_+SINEAluAluSp
CAediting_53495chr1_43394798_+SINEAluAluSp
CAediting_53496chr1_43395428_+SINEAluAluJb
CAediting_53497chr1_43397204_+SINEAluAluSx
CAediting_53498chr1_43397334_+SINEAluAluSx
CAediting_53499chr1_43397342_+SINEAluAluSx
CAediting_53500chr1_43400008_+SINEAluAluJb
CAediting_53501chr1_43400072_+SINEAluAluJb
CAediting_53502chr1_43400104_+SINEAluAluJb
CAediting_53503chr1_43400999_+SINEAluAluJb
CAediting_53504chr1_43403972_+SINEAluAluJb
CAediting_53505chr1_43405129_+SINEAluAluSq2
CAediting_53506chr1_43406287_+SINEAluAluSx1
CAediting_53507chr1_43406332_+SINEAluAluSx1
CAediting_53508chr1_43406333_+SINEAluAluSx1
CAediting_53509chr1_43406360_+SINEAluAluSx1
CAediting_53510chr1_43406372_+SINEAluAluSx1
CAediting_53511chr1_43407248_+SINEAluAluSz6
CAediting_53512chr1_43407249_+SINEAluAluSz6
CAediting_53513chr1_43407266_+SINEAluAluSz6
CAediting_53514chr1_43407270_+SINEAluAluSz6
CAediting_53515chr1_43407275_+SINEAluAluSz6
CAediting_53516chr1_43407284_+SINEAluAluSz6
CAediting_53517chr1_43407286_+SINEAluAluSz6
CAediting_53518chr1_43407295_+SINEAluAluSz6
CAediting_53519chr1_43407327_+SINEAluAluSz6
CAediting_53520chr1_43407328_+SINEAluAluSz6
CAediting_53521chr1_43407340_+SINEAluAluSz6
CAediting_53522chr1_43407341_+SINEAluAluSz6
CAediting_53523chr1_43407342_+SINEAluAluSz6
CAediting_53524chr1_43407343_+SINEAluAluSz6
CAediting_53525chr1_43407395_+SINEAluAluSz6
CAediting_53526chr1_43407396_+SINEAluAluSz6
CAediting_53527chr1_43407448_+SINEAluAluSz6
CAediting_53528chr1_43407466_+SINEAluAluSz6
CAediting_53529chr1_43407504_+SINEAluAluSz6
CAediting_53530chr1_43407572_+SINEAluFLAM_A
CAediting_53531chr1_43407573_+SINEAluFLAM_A
CAediting_53532chr1_43407578_+SINEAluFLAM_A
CAediting_53533chr1_43407642_+SINEAluFLAM_A
CAediting_53534chr1_43408283_+SINEAluAluJr4
CAediting_53535chr1_43408287_+SINEAluAluJr4
CAediting_53536chr1_43408295_+SINEAluAluJr4
CAediting_53537chr1_43408307_+SINEAluAluJr4
CAediting_53538chr1_43408321_+SINEAluAluJr4
CAediting_53539chr1_43408325_+SINEAluAluJr4
CAediting_53540chr1_43408331_+SINEAluAluJr4
CAediting_53541chr1_43408333_+SINEAluAluJr4
CAediting_53542chr1_43408364_+SINEAluAluJr4
CAediting_53543chr1_43408375_+SINEAluAluJr4
CAediting_53544chr1_43408380_+SINEAluAluJr4
CAediting_53545chr1_43408389_+SINEAluAluJr4
CAediting_53546chr1_43408396_+SINEAluAluJr4
CAediting_53547chr1_43408402_+SINEAluAluJr4
CAediting_53548chr1_43408404_+SINEAluAluJr4
CAediting_53549chr1_43408449_+SINEAluAluJr4
CAediting_53550chr1_43408455_+SINEAluAluJr4
CAediting_53551chr1_43408486_+SINEAluAluJr4
CAediting_53552chr1_43408487_+SINEAluAluJr4
CAediting_53553chr1_43408488_+SINEAluAluJr4
CAediting_53554chr1_43408495_+SINEAluAluJr4
CAediting_53555chr1_43408500_+SINEAluAluJr4
CAediting_53556chr1_43408501_+SINEAluAluJr4
CAediting_53557chr1_43408513_+SINEAluAluJr4
CAediting_53558chr1_43408518_+SINEAluAluJr4
CAediting_53559chr1_43408527_+SINEAluAluJr4
CAediting_53560chr1_43408540_+SINEAluAluJr4
CAediting_53561chr1_43408549_+SINEAluAluJr4
CAediting_53562chr1_43409953_+LINEL1L1M1
CAediting_53563chr1_43410275_+SINEAluAluSg4
CAediting_53564chr1_43410281_+SINEAluAluSg4
CAediting_53565chr1_43410289_+SINEAluAluSg4
CAediting_53566chr1_43410291_+SINEAluAluSg4
CAediting_53567chr1_43410298_+SINEAluAluSg4
CAediting_53568chr1_43410304_+SINEAluAluSg4
CAediting_53569chr1_43410319_+SINEAluAluSg4
CAediting_53570chr1_43410324_+SINEAluAluSg4
CAediting_53571chr1_43410333_+SINEAluAluSg4
CAediting_53572chr1_43410341_+SINEAluAluSg4
CAediting_53573chr1_43410350_+SINEAluAluSg4
CAediting_53574chr1_43410365_+SINEAluAluSg4
CAediting_53575chr1_43410375_+SINEAluAluSg4
CAediting_53576chr1_43410380_+SINEAluAluSg4
CAediting_53577chr1_43410386_+SINEAluAluSg4
CAediting_53578chr1_43410390_+SINEAluAluSg4
CAediting_53579chr1_43410400_+SINEAluAluSg4
CAediting_53580chr1_43410404_+SINEAluAluSg4
CAediting_53581chr1_43410408_+SINEAluAluSg4
CAediting_53582chr1_43410418_+SINEAluAluSg4
CAediting_53583chr1_43410424_+SINEAluAluSg4
CAediting_53584chr1_43410434_+SINEAluAluSg4
CAediting_53585chr1_43410435_+SINEAluAluSg4
CAediting_53586chr1_43410440_+SINEAluAluSg4
CAediting_53587chr1_43410444_+SINEAluAluSg4
CAediting_53588chr1_43410461_+SINEAluAluSg4
CAediting_53589chr1_43410475_+SINEAluAluSg4
CAediting_53590chr1_43410476_+SINEAluAluSg4
CAediting_53591chr1_43410487_+SINEAluAluSg4
CAediting_53592chr1_43410496_+SINEAluAluSg4
CAediting_53593chr1_43410500_+SINEAluAluSg4
CAediting_53594chr1_43410505_+SINEAluAluSg4
CAediting_53595chr1_43410543_+SINEAluAluSg4
CAediting_53596chr1_43411859_+SINEAluAluSx1
CAediting_53597chr1_43411882_+SINEAluAluSx1
CAediting_53598chr1_43411977_+SINEAluAluSx1
CAediting_53599chr1_43412009_+SINEAluAluSx1
CAediting_53600chr1_43412014_+SINEAluAluSx1
CAediting_53601chr1_43412039_+SINEAluAluSx1
CAediting_53602chr1_43412040_+SINEAluAluSx1
CAediting_53603chr1_43412052_+SINEAluAluSx1
CAediting_53604chr1_43412061_+SINEAluAluSx1
CAediting_53605chr1_43412070_+SINEAluAluSx1
CAediting_53606chr1_43412320_+SINEAluAluJo
CAediting_53607chr1_43412375_+SINEAluAluJo
CAediting_53608chr1_43412395_+SINEAluAluJo
CAediting_53609chr1_43412396_+SINEAluAluJo
CAediting_53610chr1_43412413_+SINEAluAluJo
CAediting_53611chr1_43412425_+SINEAluAluJo
CAediting_53612chr1_43412430_+SINEAluAluJo
CAediting_53613chr1_43412435_+SINEAluAluJo
CAediting_53614chr1_43412455_+SINEAluAluJo
CAediting_53615chr1_43412459_+SINEAluAluJo
CAediting_53616chr1_43412460_+SINEAluAluJo
CAediting_53617chr1_43412466_+SINEAluAluJo
CAediting_53618chr1_43412477_+SINEAluAluJo
CAediting_53619chr1_43412484_+SINEAluAluJo
CAediting_53620chr1_43412495_+SINEAluAluJo
CAediting_53621chr1_43412496_+SINEAluAluJo
CAediting_53622chr1_43412521_+SINEAluAluJo
CAediting_53623chr1_43412547_+SINEAluAluJo
CAediting_53624chr1_43412548_+SINEAluAluJo
CAediting_53625chr1_43412560_+SINEAluAluJo
CAediting_53626chr1_43412564_+SINEAluAluJo
CAediting_53627chr1_43413086_+LINEL1L1MA3
CAediting_53628chr1_43413138_+SINEAluAluSg7
CAediting_53629chr1_43413140_+SINEAluAluSg7
CAediting_53630chr1_43413146_+SINEAluAluSg7
CAediting_53631chr1_43413147_+SINEAluAluSg7
CAediting_53632chr1_43413196_+SINEAluAluSg7
CAediting_53633chr1_43413197_+SINEAluAluSg7
CAediting_53634chr1_43413206_+SINEAluAluSg7
CAediting_53635chr1_43413207_+SINEAluAluSg7
CAediting_53636chr1_43413218_+SINEAluAluSg7
CAediting_53637chr1_43413222_+SINEAluAluSg7
CAediting_53638chr1_43413223_+SINEAluAluSg7
CAediting_53639chr1_43413224_+SINEAluAluSg7
CAediting_53640chr1_43413225_+SINEAluAluSg7
CAediting_53641chr1_43413227_+SINEAluAluSg7
CAediting_53642chr1_43413230_+SINEAluAluSg7
CAediting_53643chr1_43413232_+SINEAluAluSg7
CAediting_53644chr1_43413236_+SINEAluAluSg7
CAediting_53645chr1_43413252_+SINEAluAluSg7
CAediting_53646chr1_43413254_+SINEAluAluSg7
CAediting_53647chr1_43413262_+SINEAluAluSg7
CAediting_53648chr1_43413263_+SINEAluAluSg7
CAediting_53649chr1_43413272_+SINEAluAluSg7
CAediting_53650chr1_43413285_+SINEAluAluSg7
CAediting_53651chr1_43413289_+SINEAluAluSg7
CAediting_53652chr1_43413294_+SINEAluAluSg7
CAediting_53653chr1_43413302_+SINEAluAluSg7
CAediting_53654chr1_43413314_+SINEAluAluSg7
CAediting_53655chr1_43413327_+SINEAluAluSg7
CAediting_53656chr1_43413364_+SINEAluAluSg7
CAediting_53657chr1_43413366_+SINEAluAluSg7
CAediting_53658chr1_43413369_+SINEAluAluSg7
CAediting_53659chr1_43413370_+SINEAluAluSg7
CAediting_53660chr1_43413521_+LINEL1L1MA3
CAediting_53661chr1_43413530_+LINEL1L1MA3
CAediting_53662chr1_43413544_+LINEL1L1MA3
CAediting_53663chr1_43414265_+SINEAluAluSz6
CAediting_53664chr1_43414486_+SINEAluAluSg7
CAediting_53665chr1_43414560_+SINEAluAluSg7
CAediting_53666chr1_43417963_+LINEL2L2
CAediting_53667chr1_43433672_+SINEAluAluSx1
CAediting_53668chr1_43437988_+SINEMIRMIRb
CAediting_53669chr1_43437991_+SINEMIRMIRb
CAediting_53670chr1_43437994_+SINEMIRMIRb
CAediting_53671chr1_43437998_+SINEMIRMIRb
CAediting_53672chr1_43438051_+SINEMIRMIRb
CAediting_53673chr1_43438362_+SINEMIRMIR
CAediting_53674chr1_43438370_+SINEMIRMIR
CAediting_53675chr1_43438409_+SINEMIRMIR
CAediting_53676chr1_43444335_+SINEAluAluSx

Top

RNA A-to-I editing events in the alternative splicing sites for SZT2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000198198.12.SZT2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000198198.12.SZT2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SZT2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SZT2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for SZT2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_53509chr1_43406360_+ENSG00000198198.12ENST00000372450hsa-miR-3189-3p43406354434063607mer-m84340633843406361153.00-26.36
CAediting_53509chr1_43406360_+ENSG00000198198.12ENST00000372450hsa-miR-6813-3p43406355434063617mer-m84340634243406362140.00-11.59
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548aa43412464434124707mer-m84341244643412471156.00-9.96
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548aa43412464434124707mer-m84341244643412471156.00-9.96
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548ap-3p43412464434124707mer-m84341245243412471156.00-9.55
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548t-3p43412464434124707mer-m84341244643412471156.00-9.96
CAediting_53621chr1_43412496_+ENSG00000198198.12ENST00000406439hsa-miR-6849-3p43412494434125007mer-m84341247943412501158.00-26.05
CAediting_53510chr1_43406372_+ENSG00000198198.12ENST00000372450hsa-miR-106a-3p43406368434063736mer4340635343406374141.00-21.13
CAediting_53562chr1_43409953_+ENSG00000198198.12ENST00000406439hsa-miR-212-5p43409947434099537mer-m84340993243409954147.00-16.39
CAediting_53565chr1_43410289_+ENSG00000198198.12ENST00000406439hsa-miR-446643410287434102926mer4341027443410293142.00-28.50
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-302a-3p43410302434103087mer-m84341028843410309147.00-15.45
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-302b-3p43410302434103087mer-m84341028243410309144.00-10.15
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-302c-3p43410302434103087mer-m84341028943410309145.00-11.96
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-302d-3p43410302434103087mer-m84341028243410309152.00-14.53
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-302e43410302434103087mer-m84341029343410309141.00-8.62
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-372-3p43410302434103087mer-m84341028243410309159.00-20.46
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-373-3p43410302434103087mer-m84341028643410309164.00-22.25
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-512-3p43410301434103077mer-m84341028443410308151.00-17.94
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-512-3p43410301434103077mer-m84341028443410308151.00-17.94
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-520a-3p43410302434103087mer-m84341028843410309140.00-11.04
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-520b-3p43410302434103087mer-m84341029043410309141.00-16.53
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-520c-3p43410302434103087mer-m84341028943410309146.00-16.53
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-520d-3p43410302434103087mer-m84341028643410309142.00-15.59
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-520e-3p43410302434103087mer-m84341028943410309140.00-13.33
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-6506-5p43410297434103037mer-m84341028243410304144.00-13.21
CAediting_53601chr1_43412039_+ENSG00000198198.12ENST00000406439hsa-miR-32643412034434120407mer-m84341202243412041140.00-13.25
CAediting_53601chr1_43412039_+ENSG00000198198.12ENST00000406439hsa-miR-330-5p43412034434120407mer-m84341201843412041143.00-20.01
CAediting_53601chr1_43412039_+ENSG00000198198.12ENST00000406439hsa-miR-431443412033434120397mer-m84341202243412040143.00-20.84
CAediting_53601chr1_43412039_+ENSG00000198198.12ENST00000406439hsa-miR-514a-5p43412035434120417mer-m84341201943412042150.00-18.62
CAediting_53601chr1_43412039_+ENSG00000198198.12ENST00000406439hsa-miR-514a-5p43412035434120417mer-m84341201943412042150.00-18.62
CAediting_53601chr1_43412039_+ENSG00000198198.12ENST00000406439hsa-miR-514a-5p43412035434120417mer-m84341201943412042150.00-18.62
CAediting_53602chr1_43412040_+ENSG00000198198.12ENST00000406439hsa-miR-3189-3p43412034434120407mer-m84341201943412041153.00-25.70
CAediting_53602chr1_43412040_+ENSG00000198198.12ENST00000406439hsa-miR-6813-3p43412035434120417mer-m84341202243412042140.00-10.68
CAediting_53603chr1_43412052_+ENSG00000198198.12ENST00000406439hsa-miR-106a-3p43412048434120536mer4341203343412054141.00-21.13
CAediting_53604chr1_43412061_+ENSG00000198198.12ENST00000406439hsa-miR-66243412056434120616mer4341204043412062153.00-32.51
CAediting_53604chr1_43412061_+ENSG00000198198.12ENST00000406439hsa-miR-663b43412059434120657mer-m84341204343412066149.00-31.22
CAediting_53605chr1_43412070_+ENSG00000198198.12ENST00000406439hsa-miR-1268a43412066434120727mer-m84341205643412073161.00-31.40
CAediting_53605chr1_43412070_+ENSG00000198198.12ENST00000406439hsa-miR-1268b43412066434120727mer-m84341205443412073161.00-33.38
CAediting_53611chr1_43412425_+ENSG00000198198.12ENST00000406439hsa-miR-3157-5p43412423434124297mer-m84341241243412430143.00-21.10
CAediting_53611chr1_43412425_+ENSG00000198198.12ENST00000406439hsa-miR-4691-3p43412422434124298mer-1a4341240543412429150.00-21.67
CAediting_53612chr1_43412430_+ENSG00000198198.12ENST00000406439hsa-miR-797743412425434124317mer-m84341241643412432145.00-12.78
CAediting_53615chr1_43412459_+ENSG00000198198.12ENST00000406439hsa-miR-34a-3p43412455434124617mer-m84341244043412462143.00-8.87
CAediting_53616chr1_43412460_+ENSG00000198198.12ENST00000406439hsa-miR-4661-5p43412454434124607mer-m84341244043412461154.00-19.32
CAediting_53618chr1_43412477_+ENSG00000198198.12ENST00000406439hsa-miR-515-5p43412475434124806mer4341245843412481140.00-16.11
CAediting_53618chr1_43412477_+ENSG00000198198.12ENST00000406439hsa-miR-515-5p43412475434124806mer4341245843412481140.00-16.11
CAediting_53620chr1_43412495_+ENSG00000198198.12ENST00000406439hsa-miR-423-3p43412491434124977mer-m84341247643412498157.00-27.92
CAediting_53620chr1_43412495_+ENSG00000198198.12ENST00000406439hsa-miR-808843412490434124967mer-m84341247743412497140.00-13.15
CAediting_53622chr1_43412521_+ENSG00000198198.12ENST00000406439hsa-miR-1199-5p43412514434125207mer-m84341250243412521156.00-28.57
CAediting_53622chr1_43412521_+ENSG00000198198.12ENST00000406439hsa-miR-607843412517434125248mer-1a4341250543412524156.00-22.40
CAediting_53622chr1_43412521_+ENSG00000198198.12ENST00000406439hsa-miR-6751-3p43412514434125207mer-m84341250143412521141.00-13.15
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-3192-5p43412540434125478mer-1a4341252843412547152.00-24.23
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-32643412542434125487mer-m84341253043412549140.00-14.14
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-330-5p43412542434125487mer-m84341252843412549140.00-18.70
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-431443412541434125477mer-m84341252543412548141.00-23.45
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-514a-5p43412543434125497mer-m84341253043412550154.00-20.77
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-514a-5p43412543434125497mer-m84341253043412550154.00-20.77
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-514a-5p43412543434125497mer-m84341253043412550154.00-20.77
CAediting_53624chr1_43412548_+ENSG00000198198.12ENST00000406439hsa-miR-3189-3p43412542434125487mer-m84341252543412549148.00-25.46
CAediting_53624chr1_43412548_+ENSG00000198198.12ENST00000406439hsa-miR-6813-3p43412543434125497mer-m84341253043412550140.00-13.75
CAediting_53625chr1_43412560_+ENSG00000198198.12ENST00000406439hsa-miR-106a-3p43412556434125616mer4341254143412562141.00-16.46

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_53567chr1_43410298_+ENSG00000198198.12ENST00000406439hsa-miR-10399-5p43410292434102987mer-m84341027843410299148-10
CAediting_53564chr1_43410281_+ENSG00000198198.12ENST00000406439hsa-miR-191-3p43410276434102816mer4341025643410282141-21.85
CAediting_53563chr1_43410275_+ENSG00000198198.12ENST00000406439hsa-miR-3190-5p43410269434102757mer-m84341025543410276151-19.9
CAediting_53564chr1_43410281_+ENSG00000198198.12ENST00000406439hsa-miR-324-3p43410278434102847mer-m84341026343410285155-19.41
CAediting_53564chr1_43410281_+ENSG00000198198.12ENST00000406439hsa-miR-425243410279434102857mer-m84341026843410286150-19.25
CAediting_53563chr1_43410275_+ENSG00000198198.12ENST00000406439hsa-miR-443543410268434102747mer-m84341025443410275146-16.73
CAediting_53563chr1_43410275_+ENSG00000198198.12ENST00000406439hsa-miR-443543410268434102747mer-m84341025443410275146-16.73
CAediting_53567chr1_43410298_+ENSG00000198198.12ENST00000406439hsa-miR-5089-5p43410296434103038mer-1a4341028143410303148-14.19
CAediting_53566chr1_43410291_+ENSG00000198198.12ENST00000406439hsa-miR-552-3p43410289434102968mer-1a4341027643410296140-14.09
CAediting_53567chr1_43410298_+ENSG00000198198.12ENST00000406439hsa-miR-6504-3p43410292434102987mer-m84341027843410299149-15.11
CAediting_53568chr1_43410304_+ENSG00000198198.12ENST00000406439hsa-miR-6513-5p43410297434103037mer-m84341028343410304147-12.87
CAediting_53563chr1_43410275_+ENSG00000198198.12ENST00000406439hsa-miR-6720-3p43410273434102808mer-1a4341025843410280145-18.88
CAediting_53565chr1_43410289_+ENSG00000198198.12ENST00000406439hsa-miR-6807-5p43410282434102887mer-m84341026543410289154-28.11
CAediting_53569chr1_43410319_+ENSG00000198198.12ENST00000406439hsa-miR-6878-3p43410312434103198mer-1a4341029943410319142-13.55
CAediting_53562chr1_43409953_+ENSG00000198198.12ENST00000406439hsa-miR-9-5p43409948434099536mer4340993143409954148-15.08
CAediting_53562chr1_43409953_+ENSG00000198198.12ENST00000406439hsa-miR-9-5p43409948434099536mer4340993143409954148-15.08
CAediting_53562chr1_43409953_+ENSG00000198198.12ENST00000406439hsa-miR-9-5p43409948434099536mer4340993143409954148-15.08
CAediting_53626chr1_43412564_+ENSG00000198198.12ENST00000406439hsa-miR-1022643412559434125657mer-m84341253843412566141-18.1
CAediting_53610chr1_43412413_+ENSG00000198198.12ENST00000406439hsa-miR-1211943412408434124147mer-m84341238943412415154-21.16
CAediting_53614chr1_43412455_+ENSG00000198198.12ENST00000406439hsa-miR-1238-5p43412448434124547mer-m84341242943412455153-20.81
CAediting_53618chr1_43412477_+ENSG00000198198.12ENST00000406439hsa-miR-128343412471434124788mer-1a4341245743412478152-12.62
CAediting_53618chr1_43412477_+ENSG00000198198.12ENST00000406439hsa-miR-128343412471434124788mer-1a4341245743412478152-12.62
CAediting_53607chr1_43412375_+ENSG00000198198.12ENST00000406439hsa-miR-17-3p43412369434123757mer-m84341235543412376150-16.96
CAediting_53618chr1_43412477_+ENSG00000198198.12ENST00000406439hsa-miR-3675-3p43412475434124817mer-m84341245843412482150-15.86
CAediting_53604chr1_43412061_+ENSG00000198198.12ENST00000406439hsa-miR-428443412057434120648mer-1a4341204743412064143-15.61
CAediting_53600chr1_43412014_+ENSG00000198198.12ENST00000406439hsa-miR-433-3p43412010434120167mer-m84341199643412017145-13.2
CAediting_53620chr1_43412495_+ENSG00000198198.12ENST00000406439hsa-miR-445343412492434124987mer-m84341248043412499145-13.37
CAediting_53621chr1_43412496_+ENSG00000198198.12ENST00000406439hsa-miR-445343412492434124987mer-m84341248043412499145-13.37
CAediting_53605chr1_43412070_+ENSG00000198198.12ENST00000406439hsa-miR-445543412066434120727mer-m84341205843412073149-17.46
CAediting_53620chr1_43412495_+ENSG00000198198.12ENST00000406439hsa-miR-453843412492434124987mer-m84341247643412499151-15.58
CAediting_53621chr1_43412496_+ENSG00000198198.12ENST00000406439hsa-miR-453843412492434124987mer-m84341247643412499151-15.58
CAediting_53610chr1_43412413_+ENSG00000198198.12ENST00000406439hsa-miR-4649-3p43412407434124148mer-1a4341239443412414140-16.23
CAediting_53618chr1_43412477_+ENSG00000198198.12ENST00000406439hsa-miR-4684-5p43412474434124807mer-m84341246043412481144-10.04
CAediting_53614chr1_43412455_+ENSG00000198198.12ENST00000406439hsa-miR-4758-5p43412448434124547mer-m84341242743412455144-23.97
CAediting_53625chr1_43412560_+ENSG00000198198.12ENST00000406439hsa-miR-511-3p43412558434125647mer-m84341254643412565141-11.34
CAediting_53626chr1_43412564_+ENSG00000198198.12ENST00000406439hsa-miR-511-3p43412558434125647mer-m84341254643412565141-11.34
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548a-3p43412465434124706mer4341245043412471150-9.62
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548a-3p43412465434124706mer4341245043412471150-9.62
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548a-3p43412465434124706mer4341245043412471150-9.62
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548f-3p43412465434124706mer4341245243412471140-8.86
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548f-3p43412465434124706mer4341245243412471140-8.86
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548f-3p43412465434124706mer4341245243412471140-8.86
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548f-3p43412465434124706mer4341245243412471140-8.86
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-548f-3p43412465434124706mer4341245243412471140-8.86
CAediting_53611chr1_43412425_+ENSG00000198198.12ENST00000406439hsa-miR-569043412422434124298mer-1a4341240943412429145-18.17
CAediting_53619chr1_43412484_+ENSG00000198198.12ENST00000406439hsa-miR-607243412479434124857mer-m84341246743412486145-16.1
CAediting_53612chr1_43412430_+ENSG00000198198.12ENST00000406439hsa-miR-6787-3p43412424434124318mer-1a4341241043412431151-19.87
CAediting_53612chr1_43412430_+ENSG00000198198.12ENST00000406439hsa-miR-6843-3p43412428434124347mer-m84341241543412435150-16.88
CAediting_53613chr1_43412435_+ENSG00000198198.12ENST00000406439hsa-miR-6843-3p43412428434124347mer-m84341241543412435150-16.88
CAediting_53612chr1_43412430_+ENSG00000198198.12ENST00000406439hsa-miR-6848-3p43412428434124347mer-m84341241743412435140-19.38
CAediting_53613chr1_43412435_+ENSG00000198198.12ENST00000406439hsa-miR-6848-3p43412428434124347mer-m84341241743412435140-19.38
CAediting_53619chr1_43412484_+ENSG00000198198.12ENST00000406439hsa-miR-6891-3p43412479434124857mer-m84341246643412486146-12.88
CAediting_53606chr1_43412320_+ENSG00000198198.12ENST00000406439hsa-miR-7159-3p43412313434123197mer-m84341230243412320140-10.68
CAediting_53617chr1_43412466_+ENSG00000198198.12ENST00000406439hsa-miR-7844-5p43412464434124696mer4341244443412470147-21.98
CAediting_53614chr1_43412455_+ENSG00000198198.12ENST00000406439hsa-miR-807743412450434124567mer-m84341243543412457155-23.45
CAediting_53601chr1_43412039_+ENSG00000198198.12ENST00000406439hsa-miR-887-5p43412032434120398mer-1a4341202043412039143-13.53
CAediting_53623chr1_43412547_+ENSG00000198198.12ENST00000406439hsa-miR-887-5p43412540434125478mer-1a4341252743412547147-15.68

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000198198.12ENST00000372450hsa-miR-200b-3p43406402434064087mer-m84340638843406409149-14
CAediting_1160181chr17_7017644_-ENSG00000198198.12ENST00000372450hsa-miR-195-3p43406829434068357mer-m84340681743406836148-12.49
CAediting_414656chr5_72878640_+ENSG00000198198.12ENST00000372450hsa-miR-4804-3p43406867434068748mer-1a4340685443406874142-12.95
CAediting_228905chr2_188297554_+ENSG00000198198.12ENST00000406439hsa-miR-561-3p43412288434122947mer-m84341226843412295150-17.26

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000198198.12ENST00000406439hsa-miR-200b-3p43409808434098147mer-m84340979243409815144-11.89

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SZT2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000357658.3retained_intronSoverviewSoverview
ENST00000372450.7protein_codingSoverviewSoverview
ENST00000406439.5nonsense_mediated_decaySoverviewSoverview
ENST00000470897.1retained_intronSoverviewSoverview
ENST00000471177.1processed_transcriptSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_53562ENST00000357658.3chr1_43409953_+-505.10-503.80-531.80
CAediting_53563ENST00000357658.3chr1_43410275_+-503.10-503.80-531.80
CAediting_53564ENST00000357658.3chr1_43410281_+-504.00-503.80-531.80
CAediting_53565ENST00000357658.3chr1_43410289_+-503.80-503.80-531.80
CAediting_53566ENST00000357658.3chr1_43410291_+-503.40-503.80-531.80
CAediting_53567ENST00000357658.3chr1_43410298_+-503.80-503.80-531.80
CAediting_53568ENST00000357658.3chr1_43410304_+-503.50-503.80-531.80
CAediting_53569ENST00000357658.3chr1_43410319_+-503.80-503.80-531.80
CAediting_53570ENST00000357658.3chr1_43410324_+-503.10-503.80-531.80
CAediting_53571ENST00000357658.3chr1_43410333_+-503.40-503.80-531.80
CAediting_53572ENST00000357658.3chr1_43410341_+-503.10-503.80-531.80
CAediting_53573ENST00000357658.3chr1_43410350_+-503.80-503.80-531.80
CAediting_53574ENST00000357658.3chr1_43410365_+-503.50-503.80-531.80
CAediting_53575ENST00000357658.3chr1_43410375_+-503.80-503.80-531.80
CAediting_53576ENST00000357658.3chr1_43410380_+-503.40-503.80-531.80
CAediting_53577ENST00000357658.3chr1_43410386_+-505.70-503.80-531.80
CAediting_53578ENST00000357658.3chr1_43410390_+-505.50-503.80-531.80
CAediting_53579ENST00000357658.3chr1_43410400_+-503.80-503.80-531.80
CAediting_53580ENST00000357658.3chr1_43410404_+-503.80-503.80-531.80
CAediting_53581ENST00000357658.3chr1_43410408_+-503.80-503.80-531.80
CAediting_53582ENST00000357658.3chr1_43410418_+-503.10-503.80-531.80
CAediting_53583ENST00000357658.3chr1_43410424_+-507.00-503.80-531.80
CAediting_53584ENST00000357658.3chr1_43410434_+-502.90-503.80-531.80
CAediting_53585ENST00000357658.3chr1_43410435_+-500.80-503.80-531.80
CAediting_53586ENST00000357658.3chr1_43410440_+-504.20-503.80-531.80
CAediting_53587ENST00000357658.3chr1_43410444_+-510.50-503.80-531.80
CAediting_53588ENST00000357658.3chr1_43410461_+-505.50-503.80-531.80
CAediting_53589ENST00000357658.3chr1_43410475_+-503.80-503.80-531.80
CAediting_53590ENST00000357658.3chr1_43410476_+-504.90-503.80-531.80
CAediting_53591ENST00000357658.3chr1_43410487_+-504.20-503.80-531.80
CAediting_53592ENST00000357658.3chr1_43410496_+-503.10-503.80-531.80
CAediting_53593ENST00000357658.3chr1_43410500_+-506.20-503.80-531.80
CAediting_53594ENST00000357658.3chr1_43410505_+-503.80-503.80-531.80
CAediting_53595ENST00000357658.3chr1_43410543_+-503.80-503.80-531.80
CAediting_53506ENST00000372450.7chr1_43406287_+-405.40-406.10-406.90
CAediting_53507ENST00000372450.7chr1_43406332_+-405.80-406.10-406.90
CAediting_53508ENST00000372450.7chr1_43406333_+-407.50-406.10-406.90
CAediting_53509ENST00000372450.7chr1_43406360_+-405.70-406.10-406.90
CAediting_53510ENST00000372450.7chr1_43406372_+-406.10-406.10-406.90
CAediting_53562ENST00000406439.5chr1_43409953_+-625.40-624.10-671.10
CAediting_53563ENST00000406439.5chr1_43410275_+-630.30-624.10-671.10
CAediting_53564ENST00000406439.5chr1_43410281_+-628.80-624.10-671.10
CAediting_53565ENST00000406439.5chr1_43410289_+-623.70-624.10-671.10
CAediting_53566ENST00000406439.5chr1_43410291_+-629.50-624.10-671.10
CAediting_53567ENST00000406439.5chr1_43410298_+-624.10-624.10-671.10
CAediting_53568ENST00000406439.5chr1_43410304_+-630.80-624.10-671.10
CAediting_53569ENST00000406439.5chr1_43410319_+-627.50-624.10-671.10
CAediting_53599ENST00000406439.5chr1_43412009_+-624.10-624.10-671.10
CAediting_53600ENST00000406439.5chr1_43412014_+-623.40-624.10-671.10
CAediting_53601ENST00000406439.5chr1_43412039_+-624.20-624.10-671.10
CAediting_53602ENST00000406439.5chr1_43412040_+-623.80-624.10-671.10
CAediting_53603ENST00000406439.5chr1_43412052_+-624.10-624.10-671.10
CAediting_53604ENST00000406439.5chr1_43412061_+-623.20-624.10-671.10
CAediting_53605ENST00000406439.5chr1_43412070_+-629.50-624.10-671.10
CAediting_53606ENST00000406439.5chr1_43412320_+-627.50-624.10-671.10
CAediting_53607ENST00000406439.5chr1_43412375_+-624.10-624.10-671.10
CAediting_53608ENST00000406439.5chr1_43412395_+-625.20-624.10-671.10
CAediting_53609ENST00000406439.5chr1_43412396_+-625.10-624.10-671.10
CAediting_53610ENST00000406439.5chr1_43412413_+-623.40-624.10-671.10
CAediting_53611ENST00000406439.5chr1_43412425_+-623.80-624.10-671.10
CAediting_53612ENST00000406439.5chr1_43412430_+-623.20-624.10-671.10
CAediting_53613ENST00000406439.5chr1_43412435_+-624.10-624.10-671.10
CAediting_53614ENST00000406439.5chr1_43412455_+-623.40-624.10-671.10
CAediting_53615ENST00000406439.5chr1_43412459_+-623.80-624.10-671.10
CAediting_53616ENST00000406439.5chr1_43412460_+-627.00-624.10-671.10
CAediting_53617ENST00000406439.5chr1_43412466_+-623.80-624.10-671.10
CAediting_53618ENST00000406439.5chr1_43412477_+-623.80-624.10-671.10
CAediting_53619ENST00000406439.5chr1_43412484_+-624.10-624.10-671.10
CAediting_53620ENST00000406439.5chr1_43412495_+-624.10-624.10-671.10
CAediting_53621ENST00000406439.5chr1_43412496_+-624.10-624.10-671.10
CAediting_53622ENST00000406439.5chr1_43412521_+-623.70-624.10-671.10
CAediting_53623ENST00000406439.5chr1_43412547_+-626.70-624.10-671.10
CAediting_53624ENST00000406439.5chr1_43412548_+-625.40-624.10-671.10
CAediting_53625ENST00000406439.5chr1_43412560_+-624.50-624.10-671.10
CAediting_53626ENST00000406439.5chr1_43412564_+-624.40-624.10-671.10
CAediting_53668ENST00000470897.1chr1_43437988_+-165.70-164.90-171.80
CAediting_53669ENST00000470897.1chr1_43437991_+-165.40-164.90-171.80
CAediting_53670ENST00000470897.1chr1_43437994_+-167.10-164.90-171.80
CAediting_53671ENST00000470897.1chr1_43437998_+-169.30-164.90-171.80
CAediting_53672ENST00000470897.1chr1_43438051_+-166.10-164.90-171.80
CAediting_53672ENST00000471177.1chr1_43438051_+-216.20-212.40-216.20

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Relation with ADAR for SZT2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for SZT2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for SZT2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for SZT2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SZT2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
SZT2C3809624EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 182CTD_human;GENOMICS_ENGLAND;UNIPROT
SZT2C0424605Developmental delay (disorder)1GENOMICS_ENGLAND
SZT2C0557874Global developmental delay1GENOMICS_ENGLAND