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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RPGRIP1L (CAeditome ID:23322) |
Gene summary for RPGRIP1L |
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Gene information | Gene symbol | RPGRIP1L | Gene ID | 23322 |
Gene name | RPGRIP1 like | |
Synonyms | COACH3|CORS3|FTM|JBTS7|MKS5|NPHP8|PPP1R134 | |
Cytomap | 16q12.2 | |
Type of gene | protein-coding | |
Description | protein fantomRPGR-interacting protein 1-like proteinfantom homolognephrocystin-8protein phosphatase 1, regulatory subunit 134 | |
Modification date | 20210518 | |
UniProtAcc | Q68CZ1 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
RPGRIP1L | GO:0045744 | Protein fantom | 19464661 |
RPGRIP1L | GO:0005654 | Protein fantom | 0000052 |
RPGRIP1L | GO:0005737 | Protein fantom | 17558409 |
RPGRIP1L | GO:0005813 | Protein fantom | 17558409 |
RPGRIP1L | GO:0005813 | Protein fantom | 21399614 |
RPGRIP1L | GO:0005829 | Protein fantom | 0000052 |
RPGRIP1L | GO:0005886 | Protein fantom | 0000052 |
RPGRIP1L | GO:0005911 | Protein fantom | 21565611 |
RPGRIP1L | GO:0005929 | Protein fantom | 17558409 |
RPGRIP1L | GO:0005930 | Protein fantom | 17558409 |
RPGRIP1L | GO:0035869 | Protein fantom | 26595381 |
RPGRIP1L | GO:0036064 | Protein fantom | 17558409 |
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RNA A-to-I events for RPGRIP1L |
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CAediting_1116471(53602531, -), CAediting_1116472(53602573, -), CAediting_1116473(53602674, -), CAediting_1116474(53603493, -), CAediting_1116475(53603549, -), CAediting_1116476(53622277, -), CAediting_1116477(53622323, -), CAediting_1116478(53694155, -), CAediting_1116479(53694171, -), CAediting_1116480(53694177, -), CAediting_1116481(53694189, -), CAediting_1116482(53694190, -), CAediting_1116483(53694191, -), CAediting_1116484(53694212, -), CAediting_1116485(53694217, -), CAediting_1116486(53694224, -), CAediting_1116487(53694229, -), CAediting_1116488(53694246, -), CAediting_1116489(53694270, -), CAediting_1116490(53694272, -), CAediting_1116491(53694275, -), CAediting_1116492(53694297, -), CAediting_1116493(53694313, -), CAediting_1116494(53694315, -), CAediting_1116495(53694354, -), CAediting_1116496(53694355, -), CAediting_1116497(53694581, -), CAediting_1116498(53694582, -), CAediting_1116499(53694597, -), CAediting_1116500(53694608, -), CAediting_1116501(53694617, -), CAediting_1116502(53694618, -), CAediting_1116503(53694619, -), CAediting_1116504(53694623, -), CAediting_1116505(53694648, -), CAediting_1116506(53694649, -), CAediting_1116507(53694675, -), CAediting_1116508(53694678, -), CAediting_1116509(53694679, -), CAediting_1116510(53694681, -), CAediting_1116511(53694705, -), CAediting_1116512(53694715, -), CAediting_1116513(53694768, -), CAediting_1116514(53694784, -), CAediting_1116515(53694785, -), CAediting_1116516(53694807, -), |
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RNA editing positional annotations for RPGRIP1L using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1116471 | chr16_53602531_- | intronic |
CAediting_1116472 | chr16_53602573_- | intronic |
CAediting_1116473 | chr16_53602674_- | intronic |
CAediting_1116474 | chr16_53603493_- | intronic |
CAediting_1116475 | chr16_53603549_- | intronic |
CAediting_1116476 | chr16_53622277_- | exonic |
CAediting_1116477 | chr16_53622323_- | exonic |
CAediting_1116478 | chr16_53694155_- | UTR3 |
CAediting_1116479 | chr16_53694171_- | UTR3 |
CAediting_1116480 | chr16_53694177_- | UTR3 |
CAediting_1116481 | chr16_53694189_- | UTR3 |
CAediting_1116482 | chr16_53694190_- | UTR3 |
CAediting_1116483 | chr16_53694191_- | UTR3 |
CAediting_1116484 | chr16_53694212_- | UTR3 |
CAediting_1116485 | chr16_53694217_- | UTR3 |
CAediting_1116486 | chr16_53694224_- | UTR3 |
CAediting_1116487 | chr16_53694229_- | UTR3 |
CAediting_1116488 | chr16_53694246_- | UTR3 |
CAediting_1116489 | chr16_53694270_- | UTR3 |
CAediting_1116490 | chr16_53694272_- | UTR3 |
CAediting_1116491 | chr16_53694275_- | UTR3 |
CAediting_1116492 | chr16_53694297_- | UTR3 |
CAediting_1116493 | chr16_53694313_- | UTR3 |
CAediting_1116494 | chr16_53694315_- | UTR3 |
CAediting_1116495 | chr16_53694354_- | UTR3 |
CAediting_1116496 | chr16_53694355_- | UTR3 |
CAediting_1116497 | chr16_53694581_- | UTR3 |
CAediting_1116498 | chr16_53694582_- | UTR3 |
CAediting_1116499 | chr16_53694597_- | UTR3 |
CAediting_1116500 | chr16_53694608_- | UTR3 |
CAediting_1116501 | chr16_53694617_- | UTR3 |
CAediting_1116502 | chr16_53694618_- | UTR3 |
CAediting_1116503 | chr16_53694619_- | UTR3 |
CAediting_1116504 | chr16_53694623_- | UTR3 |
CAediting_1116505 | chr16_53694648_- | UTR3 |
CAediting_1116506 | chr16_53694649_- | UTR3 |
CAediting_1116507 | chr16_53694675_- | UTR3 |
CAediting_1116508 | chr16_53694678_- | UTR3 |
CAediting_1116509 | chr16_53694679_- | UTR3 |
CAediting_1116510 | chr16_53694681_- | UTR3 |
CAediting_1116511 | chr16_53694705_- | UTR3 |
CAediting_1116512 | chr16_53694715_- | UTR3 |
CAediting_1116513 | chr16_53694768_- | UTR3 |
CAediting_1116514 | chr16_53694784_- | UTR3 |
CAediting_1116515 | chr16_53694785_- | UTR3 |
CAediting_1116516 | chr16_53694807_- | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1116471 | chr16_53602531_- | SINE | Alu | AluSp |
CAediting_1116472 | chr16_53602573_- | SINE | Alu | AluSp |
CAediting_1116473 | chr16_53602674_- | SINE | Alu | AluSp |
CAediting_1116474 | chr16_53603493_- | SINE | Alu | AluJb |
CAediting_1116475 | chr16_53603549_- | SINE | Alu | AluJb |
CAediting_1116476 | chr16_53622277_- | SINE | Alu | AluSx3 |
CAediting_1116477 | chr16_53622323_- | SINE | Alu | AluSx3 |
CAediting_1116478 | chr16_53694155_- | SINE | Alu | AluSx1 |
CAediting_1116479 | chr16_53694171_- | SINE | Alu | AluSx1 |
CAediting_1116480 | chr16_53694177_- | SINE | Alu | AluSx1 |
CAediting_1116481 | chr16_53694189_- | SINE | Alu | AluSx1 |
CAediting_1116482 | chr16_53694190_- | SINE | Alu | AluSx1 |
CAediting_1116483 | chr16_53694191_- | SINE | Alu | AluSx1 |
CAediting_1116484 | chr16_53694212_- | SINE | Alu | AluSx1 |
CAediting_1116485 | chr16_53694217_- | SINE | Alu | AluSx1 |
CAediting_1116486 | chr16_53694224_- | SINE | Alu | AluSx1 |
CAediting_1116487 | chr16_53694229_- | SINE | Alu | AluSx1 |
CAediting_1116488 | chr16_53694246_- | SINE | Alu | AluSx1 |
CAediting_1116489 | chr16_53694270_- | SINE | Alu | AluSx1 |
CAediting_1116490 | chr16_53694272_- | SINE | Alu | AluSx1 |
CAediting_1116491 | chr16_53694275_- | SINE | Alu | AluSx1 |
CAediting_1116492 | chr16_53694297_- | SINE | Alu | AluSx1 |
CAediting_1116493 | chr16_53694313_- | SINE | Alu | AluSx1 |
CAediting_1116494 | chr16_53694315_- | SINE | Alu | AluSx1 |
CAediting_1116495 | chr16_53694354_- | SINE | Alu | AluSx1 |
CAediting_1116496 | chr16_53694355_- | SINE | Alu | AluSx1 |
CAediting_1116497 | chr16_53694581_- | SINE | Alu | AluSq2 |
CAediting_1116498 | chr16_53694582_- | SINE | Alu | AluSq2 |
CAediting_1116499 | chr16_53694597_- | SINE | Alu | AluSq2 |
CAediting_1116500 | chr16_53694608_- | SINE | Alu | AluSq2 |
CAediting_1116501 | chr16_53694617_- | SINE | Alu | AluSq2 |
CAediting_1116502 | chr16_53694618_- | SINE | Alu | AluSq2 |
CAediting_1116503 | chr16_53694619_- | SINE | Alu | AluSq2 |
CAediting_1116504 | chr16_53694623_- | SINE | Alu | AluSq2 |
CAediting_1116505 | chr16_53694648_- | SINE | Alu | AluSq2 |
CAediting_1116506 | chr16_53694649_- | SINE | Alu | AluSq2 |
CAediting_1116507 | chr16_53694675_- | SINE | Alu | AluSq2 |
CAediting_1116508 | chr16_53694678_- | SINE | Alu | AluSq2 |
CAediting_1116509 | chr16_53694679_- | SINE | Alu | AluSq2 |
CAediting_1116510 | chr16_53694681_- | SINE | Alu | AluSq2 |
CAediting_1116511 | chr16_53694705_- | SINE | Alu | AluSq2 |
CAediting_1116512 | chr16_53694715_- | SINE | Alu | AluSq2 |
CAediting_1116513 | chr16_53694768_- | SINE | Alu | AluSq2 |
CAediting_1116514 | chr16_53694784_- | SINE | Alu | AluSq2 |
CAediting_1116515 | chr16_53694785_- | SINE | Alu | AluSq2 |
CAediting_1116516 | chr16_53694807_- | SINE | Alu | AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for RPGRIP1L |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RPGRIP1L |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for RPGRIP1L |
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The effects of the RNA editing to the miRNA binding sites for RPGRIP1L |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1116481 | chr16_53694189_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3189-3p | 53694188 | 53694194 | 7mer-m8 | 53694187 | 53694206 | 141.00 | -22.40 |
CAediting_1116481 | chr16_53694189_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6813-3p | 53694187 | 53694193 | 7mer-m8 | 53694186 | 53694206 | 140.00 | -12.88 |
CAediting_1116482 | chr16_53694190_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-326 | 53694188 | 53694194 | 7mer-m8 | 53694187 | 53694206 | 140.00 | -15.33 |
CAediting_1116482 | chr16_53694190_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-330-5p | 53694188 | 53694194 | 7mer-m8 | 53694187 | 53694208 | 140.00 | -22.45 |
CAediting_1116482 | chr16_53694190_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4314 | 53694189 | 53694195 | 7mer-m8 | 53694188 | 53694205 | 140.00 | -18.79 |
CAediting_1116482 | chr16_53694190_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-514a-5p | 53694187 | 53694193 | 7mer-m8 | 53694186 | 53694206 | 154.00 | -19.31 |
CAediting_1116482 | chr16_53694190_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-514a-5p | 53694187 | 53694193 | 7mer-m8 | 53694186 | 53694206 | 154.00 | -19.31 |
CAediting_1116482 | chr16_53694190_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-514a-5p | 53694187 | 53694193 | 7mer-m8 | 53694186 | 53694206 | 154.00 | -19.31 |
CAediting_1116478 | chr16_53694155_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4435 | 53694150 | 53694157 | 8mer-1a | 53694150 | 53694171 | 145.00 | -19.20 |
CAediting_1116478 | chr16_53694155_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4435 | 53694150 | 53694157 | 8mer-1a | 53694150 | 53694171 | 145.00 | -19.20 |
CAediting_1116479 | chr16_53694171_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-11400 | 53694171 | 53694177 | 7mer-m8 | 53694170 | 53694189 | 153.00 | -19.91 |
CAediting_1116483 | chr16_53694191_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6771-5p | 53694189 | 53694196 | 8mer-1a | 53694189 | 53694208 | 161.00 | -29.90 |
CAediting_1116487 | chr16_53694229_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3670 | 53694226 | 53694232 | 7mer-m8 | 53694225 | 53694248 | 140.00 | -14.93 |
CAediting_1116487 | chr16_53694229_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3670 | 53694226 | 53694232 | 7mer-m8 | 53694225 | 53694248 | 140.00 | -14.93 |
CAediting_1116487 | chr16_53694229_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3670 | 53694226 | 53694232 | 7mer-m8 | 53694225 | 53694248 | 140.00 | -14.93 |
CAediting_1116487 | chr16_53694229_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3670 | 53694226 | 53694232 | 7mer-m8 | 53694225 | 53694248 | 140.00 | -14.93 |
CAediting_1116487 | chr16_53694229_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6874-5p | 53694224 | 53694230 | 7mer-m8 | 53694223 | 53694245 | 157.00 | -22.87 |
CAediting_1116488 | chr16_53694246_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3940-3p | 53694242 | 53694248 | 7mer-m8 | 53694241 | 53694259 | 144.00 | -24.53 |
CAediting_1116492 | chr16_53694297_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3622b-5p | 53694295 | 53694301 | 7mer-m8 | 53694294 | 53694311 | 150.00 | -29.57 |
CAediting_1116492 | chr16_53694297_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4645-5p | 53694292 | 53694298 | 7mer-m8 | 53694291 | 53694309 | 142.00 | -13.03 |
CAediting_1116492 | chr16_53694297_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4673 | 53694292 | 53694298 | 7mer-m8 | 53694291 | 53694313 | 153.00 | -23.36 |
CAediting_1116495 | chr16_53694354_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3622a-3p | 53694350 | 53694357 | 8mer-1a | 53694350 | 53694371 | 148.00 | -19.42 |
CAediting_1116495 | chr16_53694354_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3622b-3p | 53694350 | 53694357 | 8mer-1a | 53694350 | 53694370 | 155.00 | -23.04 |
CAediting_1116497 | chr16_53694581_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-149-5p | 53694581 | 53694587 | 7mer-m8 | 53694580 | 53694602 | 157.00 | -23.25 |
CAediting_1116498 | chr16_53694582_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4638-5p | 53694579 | 53694586 | 8mer-1a | 53694579 | 53694598 | 143.00 | -16.40 |
CAediting_1116498 | chr16_53694582_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6741-3p | 53694581 | 53694588 | 8mer-1a | 53694581 | 53694603 | 159.00 | -26.65 |
CAediting_1116499 | chr16_53694597_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-1281 | 53694597 | 53694603 | 7mer-m8 | 53694596 | 53694612 | 141.00 | -16.88 |
CAediting_1116503 | chr16_53694619_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-1976 | 53694618 | 53694625 | 8mer-1a | 53694618 | 53694638 | 148.00 | -21.96 |
CAediting_1116503 | chr16_53694619_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-5571-5p | 53694615 | 53694621 | 7mer-m8 | 53694614 | 53694634 | 140.00 | -19.30 |
CAediting_1116505 | chr16_53694648_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3117-3p | 53694643 | 53694649 | 7mer-m8 | 53694642 | 53694664 | 153.00 | -20.61 |
CAediting_1116505 | chr16_53694648_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3169 | 53694643 | 53694649 | 7mer-1a | 53694643 | 53694669 | 140.00 | -23.58 |
CAediting_1116505 | chr16_53694648_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4759 | 53694643 | 53694650 | 8mer-1a | 53694643 | 53694663 | 152.00 | -14.57 |
CAediting_1116506 | chr16_53694649_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-513a-5p | 53694648 | 53694654 | 7mer-m8 | 53694647 | 53694664 | 152.00 | -21.07 |
CAediting_1116506 | chr16_53694649_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-513a-5p | 53694648 | 53694654 | 7mer-m8 | 53694647 | 53694664 | 152.00 | -21.07 |
CAediting_1116510 | chr16_53694681_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-578 | 53694678 | 53694685 | 8mer-1a | 53694678 | 53694698 | 148.00 | -9.39 |
CAediting_1116510 | chr16_53694681_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-643 | 53694680 | 53694687 | 8mer-1a | 53694680 | 53694702 | 143.00 | -10.49 |
CAediting_1116513 | chr16_53694768_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3943 | 53694764 | 53694770 | 7mer-m8 | 53694763 | 53694784 | 143.00 | -22.28 |
CAediting_1116514 | chr16_53694784_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-8052 | 53694779 | 53694785 | 7mer-1a | 53694779 | 53694797 | 140.00 | -24.15 |
CAediting_1116515 | chr16_53694785_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-513a-5p | 53694784 | 53694790 | 7mer-m8 | 53694783 | 53694800 | 144.00 | -16.68 |
CAediting_1116515 | chr16_53694785_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-513a-5p | 53694784 | 53694790 | 7mer-m8 | 53694783 | 53694800 | 144.00 | -16.68 |
CAediting_1116515 | chr16_53694785_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-638 | 53694779 | 53694785 | 7mer-1a | 53694779 | 53694803 | 157.00 | -32.92 |
CAediting_1116500 | chr16_53694608_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4437 | 53694605 | 53694611 | 7mer-m8 | 53694604 | 53694624 | 146.00 | -19.53 |
CAediting_1116501 | chr16_53694617_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3124-3p | 53694617 | 53694623 | 7mer-m8 | 53694616 | 53694637 | 149.00 | -18.11 |
CAediting_1116501 | chr16_53694617_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-891b | 53694613 | 53694619 | 7mer-m8 | 53694612 | 53694633 | 166.00 | -19.21 |
CAediting_1116502 | chr16_53694618_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-141-5p | 53694616 | 53694622 | 7mer-m8 | 53694615 | 53694637 | 146.00 | -14.08 |
CAediting_1116512 | chr16_53694715_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3146 | 53694712 | 53694718 | 7mer-m8 | 53694711 | 53694732 | 140.00 | -18.72 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1116514 | chr16_53694784_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-10399-5p | 53694783 | 53694789 | 7mer-m8 | 53694782 | 53694803 | 144 | -10.39 |
CAediting_1116515 | chr16_53694785_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-10399-5p | 53694783 | 53694789 | 7mer-m8 | 53694782 | 53694803 | 144 | -10.39 |
CAediting_1116516 | chr16_53694807_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-1271-3p | 53694801 | 53694808 | 8mer-1a | 53694801 | 53694824 | 155 | -16.19 |
CAediting_1116513 | chr16_53694768_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-150-5p | 53694767 | 53694773 | 7mer-m8 | 53694766 | 53694787 | 140 | -15.8 |
CAediting_1116480 | chr16_53694177_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-1537-5p | 53694173 | 53694179 | 7mer-m8 | 53694172 | 53694194 | 154 | -15.19 |
CAediting_1116511 | chr16_53694705_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-193b-5p | 53694700 | 53694707 | 8mer-1a | 53694700 | 53694721 | 142 | -12.72 |
CAediting_1116503 | chr16_53694619_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3074-5p | 53694618 | 53694625 | 8mer-1a | 53694618 | 53694639 | 149 | -20.16 |
CAediting_1116504 | chr16_53694623_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3074-5p | 53694618 | 53694625 | 8mer-1a | 53694618 | 53694639 | 149 | -20.16 |
CAediting_1116483 | chr16_53694191_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-30b-3p | 53694190 | 53694197 | 8mer-1a | 53694190 | 53694211 | 151 | -16.74 |
CAediting_1116511 | chr16_53694705_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3170 | 53694700 | 53694706 | 7mer-m8 | 53694699 | 53694723 | 141 | -13.57 |
CAediting_1116516 | chr16_53694807_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3176 | 53694806 | 53694812 | 7mer-m8 | 53694805 | 53694824 | 143 | -18.59 |
CAediting_1116488 | chr16_53694246_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3190-5p | 53694245 | 53694251 | 7mer-m8 | 53694244 | 53694263 | 147 | -18.34 |
CAediting_1116495 | chr16_53694354_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3614-5p | 53694350 | 53694356 | 7mer-1a | 53694350 | 53694373 | 149 | -24.44 |
CAediting_1116496 | chr16_53694355_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3614-5p | 53694350 | 53694356 | 7mer-1a | 53694350 | 53694373 | 149 | -24.44 |
CAediting_1116485 | chr16_53694217_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3622a-3p | 53694212 | 53694219 | 8mer-1a | 53694212 | 53694233 | 144 | -14.13 |
CAediting_1116485 | chr16_53694217_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3622b-3p | 53694212 | 53694219 | 8mer-1a | 53694212 | 53694232 | 153 | -18.54 |
CAediting_1116483 | chr16_53694191_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3689a-3p | 53694190 | 53694197 | 8mer-1a | 53694190 | 53694211 | 141 | -16.9 |
CAediting_1116483 | chr16_53694191_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3689b-3p | 53694190 | 53694197 | 8mer-1a | 53694190 | 53694211 | 141 | -16.9 |
CAediting_1116483 | chr16_53694191_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3689c | 53694190 | 53694197 | 8mer-1a | 53694190 | 53694211 | 141 | -16.9 |
CAediting_1116516 | chr16_53694807_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-3922-3p | 53694806 | 53694812 | 7mer-m8 | 53694805 | 53694828 | 149 | -18.47 |
CAediting_1116493 | chr16_53694313_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4679 | 53694312 | 53694318 | 7mer-m8 | 53694311 | 53694333 | 147 | -16.41 |
CAediting_1116494 | chr16_53694315_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4679 | 53694312 | 53694318 | 7mer-m8 | 53694311 | 53694333 | 147 | -16.41 |
CAediting_1116493 | chr16_53694313_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4679 | 53694312 | 53694318 | 7mer-m8 | 53694311 | 53694333 | 147 | -16.41 |
CAediting_1116494 | chr16_53694315_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4679 | 53694312 | 53694318 | 7mer-m8 | 53694311 | 53694333 | 147 | -16.41 |
CAediting_1116507 | chr16_53694675_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4735-5p | 53694674 | 53694680 | 7mer-m8 | 53694673 | 53694694 | 140 | -4.28 |
CAediting_1116508 | chr16_53694678_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4735-5p | 53694674 | 53694680 | 7mer-m8 | 53694673 | 53694694 | 140 | -4.28 |
CAediting_1116509 | chr16_53694679_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4735-5p | 53694674 | 53694680 | 7mer-m8 | 53694673 | 53694694 | 140 | -4.28 |
CAediting_1116500 | chr16_53694608_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-498-5p | 53694608 | 53694614 | 7mer-m8 | 53694607 | 53694629 | 142 | -10.65 |
CAediting_1116499 | chr16_53694597_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-5001-3p | 53694595 | 53694601 | 7mer-m8 | 53694594 | 53694618 | 153 | -21.28 |
CAediting_1116514 | chr16_53694784_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-5089-5p | 53694779 | 53694785 | 7mer-m8 | 53694778 | 53694800 | 148 | -14.13 |
CAediting_1116486 | chr16_53694224_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-516b-5p | 53694222 | 53694228 | 7mer-m8 | 53694221 | 53694242 | 144 | -12.33 |
CAediting_1116486 | chr16_53694224_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-516b-5p | 53694222 | 53694228 | 7mer-m8 | 53694221 | 53694242 | 144 | -12.33 |
CAediting_1116488 | chr16_53694246_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-548s | 53694246 | 53694252 | 7mer-m8 | 53694245 | 53694266 | 143 | -12.53 |
CAediting_1116516 | chr16_53694807_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-550a-3-5p | 53694801 | 53694808 | 8mer-1a | 53694801 | 53694820 | 140 | -12.5 |
CAediting_1116516 | chr16_53694807_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-550a-5p | 53694801 | 53694808 | 8mer-1a | 53694801 | 53694823 | 140 | -16.78 |
CAediting_1116516 | chr16_53694807_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-550a-5p | 53694801 | 53694808 | 8mer-1a | 53694801 | 53694823 | 140 | -16.78 |
CAediting_1116489 | chr16_53694270_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-593-3p | 53694267 | 53694272 | 6mer | 53694266 | 53694284 | 141 | -19.73 |
CAediting_1116490 | chr16_53694272_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-593-3p | 53694267 | 53694272 | 6mer | 53694266 | 53694284 | 141 | -19.73 |
CAediting_1116514 | chr16_53694784_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6504-3p | 53694783 | 53694789 | 7mer-m8 | 53694782 | 53694803 | 152 | -15.11 |
CAediting_1116515 | chr16_53694785_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6504-3p | 53694783 | 53694789 | 7mer-m8 | 53694782 | 53694803 | 152 | -15.11 |
CAediting_1116505 | chr16_53694648_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6504-3p | 53694647 | 53694653 | 7mer-m8 | 53694646 | 53694665 | 140 | -12.05 |
CAediting_1116506 | chr16_53694649_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6504-3p | 53694647 | 53694653 | 7mer-m8 | 53694646 | 53694665 | 140 | -12.05 |
CAediting_1116493 | chr16_53694313_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6720-3p | 53694308 | 53694314 | 7mer-m8 | 53694307 | 53694327 | 141 | -18.68 |
CAediting_1116504 | chr16_53694623_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6747-3p | 53694620 | 53694627 | 8mer-1a | 53694620 | 53694642 | 154 | -26.79 |
CAediting_1116513 | chr16_53694768_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6778-3p | 53694765 | 53694771 | 7mer-m8 | 53694764 | 53694784 | 143 | -14.47 |
CAediting_1116483 | chr16_53694191_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6779-5p | 53694190 | 53694197 | 8mer-1a | 53694190 | 53694209 | 142 | -18.72 |
CAediting_1116493 | chr16_53694313_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6811-3p | 53694310 | 53694316 | 7mer-m8 | 53694309 | 53694329 | 151 | -22.81 |
CAediting_1116494 | chr16_53694315_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6811-3p | 53694310 | 53694316 | 7mer-m8 | 53694309 | 53694329 | 151 | -22.81 |
CAediting_1116489 | chr16_53694270_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6827-3p | 53694265 | 53694271 | 7mer-m8 | 53694264 | 53694284 | 153 | -17.82 |
CAediting_1116499 | chr16_53694597_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6836-3p | 53694597 | 53694603 | 7mer-m8 | 53694596 | 53694616 | 147 | -20.52 |
CAediting_1116479 | chr16_53694171_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6847-3p | 53694166 | 53694172 | 7mer-m8 | 53694165 | 53694184 | 152 | -21.78 |
CAediting_1116511 | chr16_53694705_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6855-5p | 53694700 | 53694706 | 7mer-m8 | 53694699 | 53694725 | 147 | -17.12 |
CAediting_1116515 | chr16_53694785_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-7151-3p | 53694784 | 53694791 | 8mer-1a | 53694784 | 53694808 | 145 | -16.51 |
CAediting_1116506 | chr16_53694649_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-7151-3p | 53694648 | 53694655 | 8mer-1a | 53694648 | 53694668 | 147 | -13.94 |
CAediting_1116503 | chr16_53694619_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-7152-5p | 53694618 | 53694624 | 7mer-1a | 53694618 | 53694637 | 141 | -22.59 |
CAediting_1116504 | chr16_53694623_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-7152-5p | 53694618 | 53694624 | 7mer-1a | 53694618 | 53694637 | 141 | -22.59 |
CAediting_1116485 | chr16_53694217_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-7162-3p | 53694216 | 53694222 | 7mer-m8 | 53694215 | 53694235 | 142 | -16.62 |
CAediting_1116498 | chr16_53694582_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-8057 | 53694581 | 53694588 | 8mer-1a | 53694581 | 53694601 | 153 | -20.91 |
CAediting_1116493 | chr16_53694313_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-8070 | 53694313 | 53694318 | 6mer | 53694312 | 53694331 | 144 | -19.79 |
CAediting_1116494 | chr16_53694315_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-8070 | 53694313 | 53694318 | 6mer | 53694312 | 53694331 | 144 | -19.79 |
CAediting_1116479 | chr16_53694171_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-889-5p | 53694170 | 53694176 | 7mer-m8 | 53694169 | 53694195 | 146 | -22.12 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_117844 | chr1_162342605_+ | ENSG00000103494.11 | ENST00000568653 | hsa-miR-556-3p | 53694549 | 53694556 | 8mer-1a | 53694549 | 53694570 | 161 | -20.1 |
CAediting_228905 | chr2_188297554_+ | ENSG00000103494.11 | ENST00000568653 | hsa-miR-561-3p | 53694537 | 53694543 | 7mer-m8 | 53694536 | 53694556 | 142 | -13.41 |
CAediting_396018 | chr5_1062918_- | ENSG00000103494.11 | ENST00000568653 | hsa-miR-4635 | 53693569 | 53693575 | 7mer-m8 | 53693568 | 53693587 | 150 | -18.37 |
CAediting_580943 | chr7_100356700_+ | ENSG00000103494.11 | ENST00000568653 | hsa-miR-6840-3p | 53694359 | 53694365 | 7mer-m8 | 53694358 | 53694379 | 140 | -24.86 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000103494.11 | ENST00000568653 | hsa-miR-548aa | 53693617 | 53693623 | 7mer-m8 | 53693616 | 53693640 | 145 | -12.32 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000103494.11 | ENST00000568653 | hsa-miR-548aa | 53693617 | 53693623 | 7mer-m8 | 53693616 | 53693640 | 145 | -12.32 |
CAediting_1351755 | chr19_40282625_- | ENSG00000103494.11 | ENST00000566096 | hsa-miR-641 | 53695825 | 53695831 | 7mer-m8 | 53695824 | 53695847 | 148 | -13.08 |
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The effects of the RNA editing to the stability of the RNA structures for RPGRIP1L |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for RPGRIP1L |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for RPGRIP1L |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RPGRIP1L |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RPGRIP1L |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RPGRIP1L |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
RPGRIP1L | C1969053 | JOUBERT SYNDROME 7 | 5 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
RPGRIP1L | C1969052 | MECKEL SYNDROME, TYPE 5 | 4 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
RPGRIP1L | C1857662 | COACH syndrome | 3 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
RPGRIP1L | C0007760 | Cerebellar Diseases | 2 | CTD_human |
RPGRIP1L | C0008780 | Ciliary Motility Disorders | 2 | CTD_human |
RPGRIP1L | C0015397 | Disorder of eye | 2 | CTD_human;GENOMICS_ENGLAND |
RPGRIP1L | C0022658 | Kidney Diseases | 2 | CTD_human |
RPGRIP1L | C0265215 | Meckel-Gruber syndrome | 2 | ORPHANET |
RPGRIP1L | C4551720 | Primary Ciliary Dyskinesia | 2 | CTD_human |
RPGRIP1L | C0035304 | Retinal Degeneration | 1 | CTD_human |
RPGRIP1L | C0431399 | Familial aplasia of the vermis | 1 | GENOMICS_ENGLAND |
RPGRIP1L | C1846790 | JOUBERT SYNDROME 4 (disorder) | 1 | ORPHANET |
RPGRIP1L | C3714506 | Meckel syndrome type 1 | 1 | GENOMICS_ENGLAND |