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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: PACS2 (CAeditome ID:23241)

Gene summary for PACS2

check button Gene summary
Gene informationGene symbol

PACS2

Gene ID

23241

Gene namephosphofurin acidic cluster sorting protein 2
SynonymsDEE66|EIEE66|PACS-2|PACS1L
Cytomap

14q32.33

Type of geneprotein-coding
Descriptionphosphofurin acidic cluster sorting protein 2PACS1-like protein
Modification date20210518
UniProtAcc

Q86VP3

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
PACS2

GO:0000045

Phosphofurin acidic cluster sorting protein 2

23455425

PACS2

GO:0034497

Phosphofurin acidic cluster sorting protein 2

23455425

PACS2

GO:0005739

Phosphofurin acidic cluster sorting protein 2

0000052

PACS2

GO:0005783

Phosphofurin acidic cluster sorting protein 2

15692563


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RNA A-to-I events for PACS2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000179364.12

check button RNA A-to-I editing events in Cancer.
CAediting_1022267(105321520, +), CAediting_1022268(105321530, +), CAediting_1022269(105321624, +), CAediting_1022270(105339292, +), CAediting_1022271(105339328, +), CAediting_1022272(105339342, +), CAediting_1022273(105339354, +), CAediting_1022274(105339355, +), CAediting_1022275(105339356, +), CAediting_1022276(105339360, +), CAediting_1022277(105339386, +), CAediting_1022278(105339575, +), CAediting_1022279(105339576, +), CAediting_1022280(105339599, +), CAediting_1022281(105339853, +), CAediting_1022282(105339886, +), CAediting_1022283(105339918, +), CAediting_1022284(105339920, +), CAediting_1022285(105339988, +), CAediting_1022286(105340056, +), CAediting_1022287(105342393, +), CAediting_1022288(105342727, +), CAediting_1022289(105342732, +), CAediting_1022290(105342733, +), CAediting_1022291(105342734, +), CAediting_1022292(105342735, +), CAediting_1022293(105342763, +), CAediting_1022294(105342774, +), CAediting_1022295(105342775, +), CAediting_1022296(105342776, +), CAediting_1022297(105342783, +), CAediting_1022298(105342784, +), CAediting_1022299(105342785, +), CAediting_1022300(105342806, +), CAediting_1022301(105342824, +), CAediting_1022302(105342828, +), CAediting_1022303(105344355, +), CAediting_1022304(105353673, +), CAediting_1022305(105353711, +), CAediting_1022306(105353733, +), CAediting_1022307(105359394, +), CAediting_1022308(105359408, +), CAediting_1022309(105359465, +), CAediting_1022310(105359488, +), CAediting_1022311(105359543, +), CAediting_1022312(105359661, +), CAediting_1022313(105359685, +), CAediting_1022314(105359731, +), CAediting_1022315(105359776, +), CAediting_1022316(105360284, +), CAediting_1022317(105360285, +), CAediting_1022318(105360330, +), CAediting_1022319(105360340, +), CAediting_1022320(105360341, +), CAediting_1022321(105360353, +), CAediting_1022322(105360354, +), CAediting_1022323(105360364, +), CAediting_1022324(105360378, +), CAediting_1022325(105360397, +), CAediting_1022326(105360417, +), CAediting_1022327(105360423, +), CAediting_1022328(105360424, +), CAediting_1022329(105360429, +), CAediting_1022330(105360436, +), CAediting_1022331(105360455, +), CAediting_1022332(105360464, +), CAediting_1022333(105360484, +), CAediting_1022334(105360493, +), CAediting_1022335(105360498, +), CAediting_1022336(105361477, +), CAediting_1022337(105361533, +), CAediting_1022338(105362435, +), CAediting_1022339(105366183, +), CAediting_1022340(105366186, +), CAediting_1022341(105366189, +), CAediting_1022342(105370421, +), CAediting_1022343(105370424, +), CAediting_1022344(105370426, +), CAediting_1022345(105370427, +), CAediting_1022346(105370441, +), CAediting_1022347(105370449, +), CAediting_1022348(105370457, +), CAediting_1022349(105370458, +), CAediting_1022350(105370463, +), CAediting_1022351(105370479, +), CAediting_1022352(105370480, +), CAediting_1022353(105370488, +), CAediting_1022354(105370493, +), CAediting_1022355(105370503, +), CAediting_1022356(105370506, +), CAediting_1022357(105370514, +), CAediting_1022358(105370593, +), CAediting_1022359(105370619, +), CAediting_1022360(105370721, +), CAediting_1022361(105370727, +), CAediting_1022362(105370740, +), CAediting_1022363(105370782, +), CAediting_1022364(105370795, +), CAediting_1022365(105370799, +), CAediting_1022366(105370820, +), CAediting_1022367(105370821, +), CAediting_1022368(105370822, +), CAediting_1022369(105370834, +), CAediting_1022370(105370836, +), CAediting_1022371(105370843, +), CAediting_1022372(105372630, +), CAediting_1022373(105372644, +), CAediting_1022374(105372652, +), CAediting_1022375(105372653, +), CAediting_1022376(105372658, +), CAediting_1022377(105372714, +), CAediting_1022378(105372723, +), CAediting_1022379(105372781, +), CAediting_1022380(105372791, +), CAediting_1022381(105372808, +), CAediting_1022382(105372846, +), CAediting_1022383(105372847, +), CAediting_1022384(105373603, +), CAediting_1022385(105373605, +), CAediting_1022386(105373657, +), CAediting_1022387(105373667, +), CAediting_1022388(105373668, +), CAediting_1022389(105373802, +), CAediting_1022390(105373952, +), CAediting_1022391(105373953, +), CAediting_1022392(105375218, +), CAediting_1022393(105375224, +), CAediting_1022394(105375225, +), CAediting_1022395(105375269, +), CAediting_1022396(105375276, +), CAediting_1022397(105375277, +), CAediting_1022398(105375291, +), CAediting_1022399(105375292, +), CAediting_1022400(105375345, +), CAediting_1022401(105375357, +), CAediting_1022402(105375363, +), CAediting_1022403(105375399, +), CAediting_1022404(105385863, +), CAediting_1022405(105386211, +), CAediting_1022406(105388569, +), CAediting_1022407(105390566, +), CAediting_1022408(105391360, +), CAediting_1022409(105393612, +), CAediting_1022410(105393646, +), CAediting_1022411(105393664, +), CAediting_1022412(105393683, +), CAediting_1022413(105393689, +), CAediting_1022414(105393690, +), CAediting_1022415(105393947, +), CAediting_1022416(105393958, +), CAediting_1022417(105393959, +), CAediting_1022418(105393972, +), CAediting_1022419(105393983, +), CAediting_1022420(105393988, +), CAediting_1022421(105394020, +), CAediting_1022422(105394025, +), CAediting_1022423(105394026, +), CAediting_1022424(105396594, +), CAediting_1022425(105396601, +), CAediting_1022426(105396604, +), CAediting_1022427(105396627, +), CAediting_1022428(105396630, +), CAediting_1022429(105396653, +), CAediting_1022430(105396683, +), CAediting_1022431(105396686, +), CAediting_1022432(105396690, +), CAediting_1022433(105396764, +), CAediting_1022434(105396765, +), CAediting_1022435(105396777, +),

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RNA editing positional annotations for PACS2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1022267chr14_105321520_+ncRNA_intronic
CAediting_1022268chr14_105321530_+ncRNA_intronic
CAediting_1022269chr14_105321624_+ncRNA_intronic
CAediting_1022270chr14_105339292_+ncRNA_intronic
CAediting_1022271chr14_105339328_+ncRNA_intronic
CAediting_1022272chr14_105339342_+ncRNA_intronic
CAediting_1022273chr14_105339354_+ncRNA_intronic
CAediting_1022274chr14_105339355_+ncRNA_intronic
CAediting_1022275chr14_105339356_+ncRNA_intronic
CAediting_1022276chr14_105339360_+ncRNA_intronic
CAediting_1022277chr14_105339386_+ncRNA_intronic
CAediting_1022278chr14_105339575_+ncRNA_intronic
CAediting_1022279chr14_105339576_+ncRNA_intronic
CAediting_1022280chr14_105339599_+ncRNA_intronic
CAediting_1022281chr14_105339853_+ncRNA_intronic
CAediting_1022282chr14_105339886_+ncRNA_intronic
CAediting_1022283chr14_105339918_+ncRNA_intronic
CAediting_1022284chr14_105339920_+ncRNA_intronic
CAediting_1022285chr14_105339988_+ncRNA_intronic
CAediting_1022286chr14_105340056_+ncRNA_intronic
CAediting_1022287chr14_105342393_+ncRNA_intronic
CAediting_1022288chr14_105342727_+ncRNA_intronic
CAediting_1022289chr14_105342732_+ncRNA_intronic
CAediting_1022290chr14_105342733_+ncRNA_intronic
CAediting_1022291chr14_105342734_+ncRNA_intronic
CAediting_1022292chr14_105342735_+ncRNA_intronic
CAediting_1022293chr14_105342763_+ncRNA_intronic
CAediting_1022294chr14_105342774_+ncRNA_intronic
CAediting_1022295chr14_105342775_+ncRNA_intronic
CAediting_1022296chr14_105342776_+ncRNA_intronic
CAediting_1022297chr14_105342783_+ncRNA_intronic
CAediting_1022298chr14_105342784_+ncRNA_intronic
CAediting_1022299chr14_105342785_+ncRNA_intronic
CAediting_1022300chr14_105342806_+ncRNA_intronic
CAediting_1022301chr14_105342824_+ncRNA_intronic
CAediting_1022302chr14_105342828_+ncRNA_intronic
CAediting_1022303chr14_105344355_+ncRNA_intronic
CAediting_1022304chr14_105353673_+intronic
CAediting_1022305chr14_105353711_+intronic
CAediting_1022306chr14_105353733_+intronic
CAediting_1022307chr14_105359394_+ncRNA_intronic
CAediting_1022308chr14_105359408_+ncRNA_intronic
CAediting_1022309chr14_105359465_+ncRNA_intronic
CAediting_1022310chr14_105359488_+ncRNA_intronic
CAediting_1022311chr14_105359543_+ncRNA_intronic
CAediting_1022312chr14_105359661_+ncRNA_intronic
CAediting_1022313chr14_105359685_+ncRNA_intronic
CAediting_1022314chr14_105359731_+ncRNA_intronic
CAediting_1022315chr14_105359776_+ncRNA_intronic
CAediting_1022316chr14_105360284_+ncRNA_intronic
CAediting_1022317chr14_105360285_+ncRNA_intronic
CAediting_1022318chr14_105360330_+ncRNA_intronic
CAediting_1022319chr14_105360340_+ncRNA_intronic
CAediting_1022320chr14_105360341_+ncRNA_intronic
CAediting_1022321chr14_105360353_+ncRNA_intronic
CAediting_1022322chr14_105360354_+ncRNA_intronic
CAediting_1022323chr14_105360364_+ncRNA_intronic
CAediting_1022324chr14_105360378_+ncRNA_intronic
CAediting_1022325chr14_105360397_+ncRNA_intronic
CAediting_1022326chr14_105360417_+ncRNA_intronic
CAediting_1022327chr14_105360423_+ncRNA_intronic
CAediting_1022328chr14_105360424_+ncRNA_intronic
CAediting_1022329chr14_105360429_+ncRNA_intronic
CAediting_1022330chr14_105360436_+ncRNA_intronic
CAediting_1022331chr14_105360455_+ncRNA_intronic
CAediting_1022332chr14_105360464_+ncRNA_intronic
CAediting_1022333chr14_105360484_+ncRNA_intronic
CAediting_1022334chr14_105360493_+ncRNA_intronic
CAediting_1022335chr14_105360498_+ncRNA_intronic
CAediting_1022336chr14_105361477_+ncRNA_intronic
CAediting_1022337chr14_105361533_+ncRNA_intronic
CAediting_1022338chr14_105362435_+ncRNA_intronic
CAediting_1022339chr14_105366183_+ncRNA_intronic
CAediting_1022340chr14_105366186_+ncRNA_intronic
CAediting_1022341chr14_105366189_+ncRNA_intronic
CAediting_1022342chr14_105370421_+ncRNA_exonic
CAediting_1022343chr14_105370424_+ncRNA_exonic
CAediting_1022344chr14_105370426_+ncRNA_exonic
CAediting_1022345chr14_105370427_+ncRNA_exonic
CAediting_1022346chr14_105370441_+ncRNA_exonic
CAediting_1022347chr14_105370449_+ncRNA_exonic
CAediting_1022348chr14_105370457_+ncRNA_exonic
CAediting_1022349chr14_105370458_+ncRNA_exonic
CAediting_1022350chr14_105370463_+ncRNA_exonic
CAediting_1022351chr14_105370479_+ncRNA_exonic
CAediting_1022352chr14_105370480_+ncRNA_exonic
CAediting_1022353chr14_105370488_+ncRNA_exonic
CAediting_1022354chr14_105370493_+ncRNA_exonic
CAediting_1022355chr14_105370503_+ncRNA_exonic
CAediting_1022356chr14_105370506_+ncRNA_exonic
CAediting_1022357chr14_105370514_+ncRNA_exonic
CAediting_1022358chr14_105370593_+ncRNA_exonic
CAediting_1022359chr14_105370619_+ncRNA_exonic
CAediting_1022360chr14_105370721_+ncRNA_exonic
CAediting_1022361chr14_105370727_+ncRNA_exonic
CAediting_1022362chr14_105370740_+ncRNA_exonic
CAediting_1022363chr14_105370782_+ncRNA_exonic
CAediting_1022364chr14_105370795_+ncRNA_exonic
CAediting_1022365chr14_105370799_+ncRNA_exonic
CAediting_1022366chr14_105370820_+ncRNA_exonic
CAediting_1022367chr14_105370821_+ncRNA_exonic
CAediting_1022368chr14_105370822_+ncRNA_exonic
CAediting_1022369chr14_105370834_+ncRNA_exonic
CAediting_1022370chr14_105370836_+ncRNA_exonic
CAediting_1022371chr14_105370843_+ncRNA_exonic
CAediting_1022372chr14_105372630_+ncRNA_exonic
CAediting_1022373chr14_105372644_+ncRNA_exonic
CAediting_1022374chr14_105372652_+ncRNA_exonic
CAediting_1022375chr14_105372653_+ncRNA_exonic
CAediting_1022376chr14_105372658_+ncRNA_exonic
CAediting_1022377chr14_105372714_+ncRNA_exonic
CAediting_1022378chr14_105372723_+ncRNA_exonic
CAediting_1022379chr14_105372781_+ncRNA_exonic
CAediting_1022380chr14_105372791_+ncRNA_exonic
CAediting_1022381chr14_105372808_+ncRNA_exonic
CAediting_1022382chr14_105372846_+ncRNA_exonic
CAediting_1022383chr14_105372847_+ncRNA_exonic
CAediting_1022384chr14_105373603_+ncRNA_intronic
CAediting_1022385chr14_105373605_+ncRNA_intronic
CAediting_1022386chr14_105373657_+ncRNA_intronic
CAediting_1022387chr14_105373667_+ncRNA_intronic
CAediting_1022388chr14_105373668_+ncRNA_intronic
CAediting_1022389chr14_105373802_+ncRNA_intronic
CAediting_1022390chr14_105373952_+ncRNA_intronic
CAediting_1022391chr14_105373953_+ncRNA_intronic
CAediting_1022392chr14_105375218_+ncRNA_intronic
CAediting_1022393chr14_105375224_+ncRNA_intronic
CAediting_1022394chr14_105375225_+ncRNA_intronic
CAediting_1022395chr14_105375269_+ncRNA_intronic
CAediting_1022396chr14_105375276_+ncRNA_intronic
CAediting_1022397chr14_105375277_+ncRNA_intronic
CAediting_1022398chr14_105375291_+ncRNA_intronic
CAediting_1022399chr14_105375292_+ncRNA_intronic
CAediting_1022400chr14_105375345_+ncRNA_intronic
CAediting_1022401chr14_105375357_+ncRNA_intronic
CAediting_1022402chr14_105375363_+ncRNA_intronic
CAediting_1022403chr14_105375399_+ncRNA_intronic
CAediting_1022404chr14_105385863_+ncRNA_intronic
CAediting_1022405chr14_105386211_+ncRNA_intronic
CAediting_1022406chr14_105388569_+ncRNA_intronic
CAediting_1022407chr14_105390566_+ncRNA_exonic
CAediting_1022408chr14_105391360_+ncRNA_exonic
CAediting_1022409chr14_105393612_+ncRNA_intronic
CAediting_1022410chr14_105393646_+ncRNA_intronic
CAediting_1022411chr14_105393664_+ncRNA_intronic
CAediting_1022412chr14_105393683_+ncRNA_intronic
CAediting_1022413chr14_105393689_+ncRNA_intronic
CAediting_1022414chr14_105393690_+ncRNA_intronic
CAediting_1022415chr14_105393947_+ncRNA_intronic
CAediting_1022416chr14_105393958_+ncRNA_intronic
CAediting_1022417chr14_105393959_+ncRNA_intronic
CAediting_1022418chr14_105393972_+ncRNA_intronic
CAediting_1022419chr14_105393983_+ncRNA_intronic
CAediting_1022420chr14_105393988_+ncRNA_intronic
CAediting_1022421chr14_105394020_+ncRNA_intronic
CAediting_1022422chr14_105394025_+ncRNA_intronic
CAediting_1022423chr14_105394026_+ncRNA_intronic
CAediting_1022424chr14_105396594_+UTR3
CAediting_1022425chr14_105396601_+UTR3
CAediting_1022426chr14_105396604_+UTR3
CAediting_1022427chr14_105396627_+UTR3
CAediting_1022428chr14_105396630_+UTR3
CAediting_1022429chr14_105396653_+UTR3
CAediting_1022430chr14_105396683_+UTR3
CAediting_1022431chr14_105396686_+UTR3
CAediting_1022432chr14_105396690_+UTR3
CAediting_1022433chr14_105396764_+UTR3
CAediting_1022434chr14_105396765_+UTR3
CAediting_1022435chr14_105396777_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1022267chr14_105321520_+SINEAluAluJb
CAediting_1022268chr14_105321530_+SINEAluAluJb
CAediting_1022269chr14_105321624_+SINEAluAluJb
CAediting_1022270chr14_105339292_+SINEAluAluSq2
CAediting_1022271chr14_105339328_+SINEAluAluSq2
CAediting_1022272chr14_105339342_+SINEAluAluSq2
CAediting_1022273chr14_105339354_+SINEAluAluSq2
CAediting_1022274chr14_105339355_+SINEAluAluSq2
CAediting_1022275chr14_105339356_+SINEAluAluSq2
CAediting_1022276chr14_105339360_+SINEAluAluSq2
CAediting_1022277chr14_105339386_+SINEAluAluSq2
CAediting_1022278chr14_105339575_+SINEAluAluJr
CAediting_1022279chr14_105339576_+SINEAluAluJr
CAediting_1022280chr14_105339599_+SINEAluAluJr
CAediting_1022281chr14_105339853_+SINEAluAluSx
CAediting_1022282chr14_105339886_+SINEAluAluJb
CAediting_1022283chr14_105339918_+SINEAluAluJb
CAediting_1022284chr14_105339920_+SINEAluAluJb
CAediting_1022285chr14_105339988_+SINEAluAluJb
CAediting_1022286chr14_105340056_+SINEAluAluJb
CAediting_1022287chr14_105342393_+SINEAluAluJr
CAediting_1022288chr14_105342727_+SINEAluAluSz
CAediting_1022289chr14_105342732_+SINEAluAluSz
CAediting_1022290chr14_105342733_+SINEAluAluSz
CAediting_1022291chr14_105342734_+SINEAluAluSz
CAediting_1022292chr14_105342735_+SINEAluAluSz
CAediting_1022293chr14_105342763_+SINEAluAluSz
CAediting_1022294chr14_105342774_+SINEAluAluSz
CAediting_1022295chr14_105342775_+SINEAluAluSz
CAediting_1022296chr14_105342776_+SINEAluAluSz
CAediting_1022297chr14_105342783_+SINEAluAluSz
CAediting_1022298chr14_105342784_+SINEAluAluSz
CAediting_1022299chr14_105342785_+SINEAluAluSz
CAediting_1022300chr14_105342806_+SINEAluAluSz
CAediting_1022301chr14_105342824_+SINEAluAluSz
CAediting_1022302chr14_105342828_+SINEAluAluSz
CAediting_1022303chr14_105344355_+SINEAluAluSx3
CAediting_1022304chr14_105353673_+SINEAluAluSg
CAediting_1022305chr14_105353711_+SINEAluAluSg
CAediting_1022306chr14_105353733_+SINEAluAluSg
CAediting_1022307chr14_105359394_+SINEAluAluSq
CAediting_1022308chr14_105359408_+SINEAluAluSq
CAediting_1022309chr14_105359465_+SINEAluAluSq
CAediting_1022310chr14_105359488_+SINEAluAluSq
CAediting_1022311chr14_105359543_+SINEAluAluSq
CAediting_1022312chr14_105359661_+SINEAluAluY
CAediting_1022313chr14_105359685_+SINEAluAluY
CAediting_1022314chr14_105359731_+SINEAluAluY
CAediting_1022315chr14_105359776_+SINEAluAluY
CAediting_1022316chr14_105360284_+SINEAluAluSx
CAediting_1022317chr14_105360285_+SINEAluAluSx
CAediting_1022318chr14_105360330_+SINEAluAluSx
CAediting_1022319chr14_105360340_+SINEAluAluSx
CAediting_1022320chr14_105360341_+SINEAluAluSx
CAediting_1022321chr14_105360353_+SINEAluAluSx
CAediting_1022322chr14_105360354_+SINEAluAluSx
CAediting_1022323chr14_105360364_+SINEAluAluSx
CAediting_1022324chr14_105360378_+SINEAluAluSx
CAediting_1022325chr14_105360397_+SINEAluAluSx
CAediting_1022326chr14_105360417_+SINEAluAluSx
CAediting_1022327chr14_105360423_+SINEAluAluSx
CAediting_1022328chr14_105360424_+SINEAluAluSx
CAediting_1022329chr14_105360429_+SINEAluAluSx
CAediting_1022330chr14_105360436_+SINEAluAluSx
CAediting_1022331chr14_105360455_+SINEAluAluSx
CAediting_1022332chr14_105360464_+SINEAluAluSx
CAediting_1022333chr14_105360484_+SINEAluAluSx
CAediting_1022334chr14_105360493_+SINEAluAluSx
CAediting_1022335chr14_105360498_+SINEAluAluSx
CAediting_1022336chr14_105361477_+SINEAluAluSq2
CAediting_1022337chr14_105361533_+SINEAluAluSq2
CAediting_1022338chr14_105362435_+SINEAluAluY
CAediting_1022339chr14_105366183_+SINEAluAluSx1
CAediting_1022340chr14_105366186_+SINEAluAluSx1
CAediting_1022341chr14_105366189_+SINEAluAluSx1
CAediting_1022342chr14_105370421_+LINEL1L1ME4a
CAediting_1022343chr14_105370424_+LINEL1L1ME4a
CAediting_1022344chr14_105370426_+LINEL1L1ME4a
CAediting_1022346chr14_105370441_+SINEAluAluJb
CAediting_1022347chr14_105370449_+SINEAluAluJb
CAediting_1022348chr14_105370457_+SINEAluAluJb
CAediting_1022349chr14_105370458_+SINEAluAluJb
CAediting_1022350chr14_105370463_+SINEAluAluJb
CAediting_1022351chr14_105370479_+SINEAluAluJb
CAediting_1022352chr14_105370480_+SINEAluAluJb
CAediting_1022353chr14_105370488_+SINEAluAluJb
CAediting_1022354chr14_105370493_+SINEAluAluJb
CAediting_1022355chr14_105370503_+SINEAluAluJb
CAediting_1022356chr14_105370506_+SINEAluAluJb
CAediting_1022357chr14_105370514_+SINEAluAluJb
CAediting_1022358chr14_105370593_+SINEAluAluJb
CAediting_1022359chr14_105370619_+SINEAluAluJb
CAediting_1022360chr14_105370721_+SINEAluAluSx
CAediting_1022361chr14_105370727_+SINEAluAluSx
CAediting_1022362chr14_105370740_+SINEAluAluSx
CAediting_1022363chr14_105370782_+SINEAluAluSx
CAediting_1022364chr14_105370795_+SINEAluAluSx
CAediting_1022365chr14_105370799_+SINEAluAluSx
CAediting_1022366chr14_105370820_+SINEAluAluSx
CAediting_1022367chr14_105370821_+SINEAluAluSx
CAediting_1022368chr14_105370822_+SINEAluAluSx
CAediting_1022369chr14_105370834_+SINEAluAluSx
CAediting_1022370chr14_105370836_+SINEAluAluSx
CAediting_1022371chr14_105370843_+SINEAluAluSx
CAediting_1022372chr14_105372630_+SINEAluAluY
CAediting_1022373chr14_105372644_+SINEAluAluY
CAediting_1022374chr14_105372652_+SINEAluAluY
CAediting_1022375chr14_105372653_+SINEAluAluY
CAediting_1022376chr14_105372658_+SINEAluAluY
CAediting_1022377chr14_105372714_+SINEAluAluY
CAediting_1022378chr14_105372723_+SINEAluAluY
CAediting_1022379chr14_105372781_+SINEAluAluY
CAediting_1022380chr14_105372791_+SINEAluAluY
CAediting_1022381chr14_105372808_+SINEAluAluY
CAediting_1022382chr14_105372846_+SINEAluAluY
CAediting_1022383chr14_105372847_+SINEAluAluY
CAediting_1022384chr14_105373603_+SINEAluAluSc8
CAediting_1022385chr14_105373605_+SINEAluAluSc8
CAediting_1022386chr14_105373657_+SINEAluAluSc8
CAediting_1022387chr14_105373667_+SINEAluAluSc8
CAediting_1022388chr14_105373668_+SINEAluAluSc8
CAediting_1022389chr14_105373802_+SINEAluAluSc8
CAediting_1022390chr14_105373952_+SINEAluAluSx1
CAediting_1022391chr14_105373953_+SINEAluAluSx1
CAediting_1022392chr14_105375218_+SINEAluAluY
CAediting_1022393chr14_105375224_+SINEAluAluY
CAediting_1022394chr14_105375225_+SINEAluAluY
CAediting_1022395chr14_105375269_+SINEAluAluY
CAediting_1022396chr14_105375276_+SINEAluAluY
CAediting_1022397chr14_105375277_+SINEAluAluY
CAediting_1022398chr14_105375291_+SINEAluAluY
CAediting_1022399chr14_105375292_+SINEAluAluY
CAediting_1022400chr14_105375345_+SINEAluAluY
CAediting_1022401chr14_105375357_+SINEAluAluY
CAediting_1022402chr14_105375363_+SINEAluAluY
CAediting_1022403chr14_105375399_+SINEAluAluY
CAediting_1022409chr14_105393612_+SINEAluAluSq2
CAediting_1022410chr14_105393646_+SINEAluAluSq2
CAediting_1022411chr14_105393664_+SINEAluAluSq2
CAediting_1022412chr14_105393683_+SINEAluAluSq2
CAediting_1022413chr14_105393689_+SINEAluAluSq2
CAediting_1022414chr14_105393690_+SINEAluAluSq2
CAediting_1022415chr14_105393947_+SINEAluAluYc
CAediting_1022416chr14_105393958_+SINEAluAluYc
CAediting_1022417chr14_105393959_+SINEAluAluYc
CAediting_1022418chr14_105393972_+SINEAluAluYc
CAediting_1022419chr14_105393983_+SINEAluAluYc
CAediting_1022420chr14_105393988_+SINEAluAluYc
CAediting_1022421chr14_105394020_+SINEAluAluYc
CAediting_1022422chr14_105394025_+SINEAluAluYc
CAediting_1022423chr14_105394026_+SINEAluAluYc
CAediting_1022424chr14_105396594_+SINEAluAluSz
CAediting_1022425chr14_105396601_+SINEAluAluSz
CAediting_1022426chr14_105396604_+SINEAluAluSz
CAediting_1022427chr14_105396627_+SINEAluAluSz
CAediting_1022428chr14_105396630_+SINEAluAluSz
CAediting_1022429chr14_105396653_+SINEAluAluSz
CAediting_1022430chr14_105396683_+SINEAluAluSz
CAediting_1022431chr14_105396686_+SINEAluAluSz
CAediting_1022432chr14_105396690_+SINEAluAluSz
CAediting_1022433chr14_105396764_+SINEAluAluSz
CAediting_1022434chr14_105396765_+SINEAluAluSz
CAediting_1022435chr14_105396777_+SINEAluAluSz

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RNA A-to-I editing events in the alternative splicing sites for PACS2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000179364.12.PACS2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000179364.12.PACS2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for PACS2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for PACS2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for PACS2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1022424chr14_105396594_+ENSG00000179364.12ENST00000447393hsa-miR-1247-3p1053965891053965957mer-m8105396574105396596162.00-30.46
CAediting_1022425chr14_105396601_+ENSG00000179364.12ENST00000447393hsa-miR-45391053965951053966006mer105396582105396601141.00-20.99
CAediting_1022427chr14_105396627_+ENSG00000179364.12ENST00000447393hsa-miR-1247-3p1053966211053966277mer-m8105396606105396628160.00-27.57
CAediting_1022428chr14_105396630_+ENSG00000179364.12ENST00000447393hsa-miR-4691-3p1053966271053966337mer-m8105396607105396634150.00-26.36
CAediting_1022432chr14_105396690_+ENSG00000179364.12ENST00000447393hsa-miR-1224-3p1053966871053966937mer-m8105396674105396694149.00-22.51
CAediting_1022433chr14_105396764_+ENSG00000179364.12ENST00000447393hsa-miR-3261053967591053967657mer-m8105396747105396766140.00-15.12
CAediting_1022433chr14_105396764_+ENSG00000179364.12ENST00000447393hsa-miR-330-5p1053967591053967657mer-m8105396745105396766140.00-21.22
CAediting_1022433chr14_105396764_+ENSG00000179364.12ENST00000447393hsa-miR-43141053967581053967647mer-m8105396748105396765140.00-21.17
CAediting_1022433chr14_105396764_+ENSG00000179364.12ENST00000447393hsa-miR-514a-5p1053967601053967667mer-m8105396744105396767146.00-20.07
CAediting_1022433chr14_105396764_+ENSG00000179364.12ENST00000447393hsa-miR-514a-5p1053967601053967667mer-m8105396744105396767146.00-20.07
CAediting_1022433chr14_105396764_+ENSG00000179364.12ENST00000447393hsa-miR-514a-5p1053967601053967667mer-m8105396744105396767146.00-20.07
CAediting_1022434chr14_105396765_+ENSG00000179364.12ENST00000447393hsa-miR-3189-3p1053967591053967657mer-m8105396743105396766153.00-24.71
CAediting_1022434chr14_105396765_+ENSG00000179364.12ENST00000447393hsa-miR-6813-3p1053967601053967667mer-m8105396747105396767140.00-12.55
CAediting_1022435chr14_105396777_+ENSG00000179364.12ENST00000447393hsa-miR-106a-3p1053967731053967786mer105396758105396779141.00-21.13
CAediting_1022429chr14_105396653_+ENSG00000179364.12ENST00000447393hsa-miR-6770-3p1053966491053966557mer-m8105396635105396656150.00-20.38
CAediting_1022429chr14_105396653_+ENSG00000179364.12ENST00000447393hsa-miR-6770-3p1053966491053966557mer-m8105396635105396656150.00-20.38
CAediting_1022429chr14_105396653_+ENSG00000179364.12ENST00000447393hsa-miR-6770-3p1053966491053966557mer-m8105396635105396656150.00-20.38

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1022424chr14_105396594_+ENSG00000179364.12ENST00000447393hsa-miR-30b-3p1053965881053965936mer105396573105396594148-25.9
CAediting_1022424chr14_105396594_+ENSG00000179364.12ENST00000447393hsa-miR-30c-1-3p1053965871053965937mer-m8105396573105396594152-23.59
CAediting_1022424chr14_105396594_+ENSG00000179364.12ENST00000447393hsa-miR-30c-2-3p1053965871053965937mer-m8105396570105396594154-26.72
CAediting_1022431chr14_105396686_+ENSG00000179364.12ENST00000447393hsa-miR-3675-3p1053966841053966907mer-m8105396670105396691145-12.58
CAediting_1022432chr14_105396690_+ENSG00000179364.12ENST00000447393hsa-miR-3675-3p1053966841053966907mer-m8105396670105396691145-12.58
CAediting_1022424chr14_105396594_+ENSG00000179364.12ENST00000447393hsa-miR-490-3p1053965911053965977mer-m8105396577105396598153-22.49
CAediting_1022428chr14_105396630_+ENSG00000179364.12ENST00000447393hsa-miR-56901053966271053966337mer-m8105396614105396634145-16.75
CAediting_1022424chr14_105396594_+ENSG00000179364.12ENST00000447393hsa-miR-6788-5p1053965871053965937mer-m8105396574105396594151-25.89
CAediting_1022424chr14_105396594_+ENSG00000179364.12ENST00000447393hsa-miR-6852-5p1053965901053965956mer105396576105396596140-23.54
CAediting_1022433chr14_105396764_+ENSG00000179364.12ENST00000447393hsa-miR-887-5p1053967571053967648mer-1a105396744105396764147-13.82

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000179364.12ENST00000447393hsa-miR-605-3p1053957891053957957mer-m8105395778105395796144-15.35
CAediting_980496chr14_31014685_-ENSG00000179364.12ENST00000447393hsa-miR-624-3p1053979261053979327mer-m8105397914105397933144-18.28
CAediting_524911chr7_5495852_-ENSG00000179364.12ENST00000325438hsa-miR-589-3p1053948521053948587mer-m8105394835105394859159-24.56
CAediting_1229413chr17_67471544_+ENSG00000179364.12ENST00000447393hsa-miR-548aa1053959441053959507mer-m8105395927105395951140-13.69
CAediting_1229413chr17_67471544_+ENSG00000179364.12ENST00000447393hsa-miR-548aa1053979931053979997mer-m8105397974105398000151-18.9
CAediting_1229415chr17_67471547_+ENSG00000179364.12ENST00000447393hsa-miR-548aa1053968691053968757mer-m8105396849105396876158-19.7
CAediting_86358chr1_109598906_+ENSG00000179364.12ENST00000447393hsa-miR-197-5p1053960321053960387mer-m8105396017105396039150-19.79
CAediting_86358chr1_109598906_+ENSG00000179364.12ENST00000447393hsa-miR-197-5p1053967421053967487mer-m8105396721105396749146-31.3
CAediting_86358chr1_109598906_+ENSG00000179364.12ENST00000447393hsa-miR-197-5p1053955231053955297mer-m8105395511105395530155-25.81
CAediting_396018chr5_1062918_-ENSG00000179364.12ENST00000447393hsa-miR-46351053967321053967387mer-m8105396719105396739162-21.35
CAediting_524911chr7_5495852_-ENSG00000179364.12ENST00000447393hsa-miR-589-3p1053948521053948587mer-m8105394835105394859159-24.56
CAediting_524911chr7_5495852_-ENSG00000179364.12ENST00000447393hsa-miR-589-3p1053965301053965367mer-m8105396513105396537158-19.59
CAediting_524911chr7_5495852_-ENSG00000179364.12ENST00000547217hsa-miR-589-3p1053948521053948587mer-m8105394835105394859159-24.56
CAediting_1524209chrX_134546392_-ENSG00000179364.12ENST00000447393hsa-miR-503-5p1053975801053975856mer105397566105397586145-26.75

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1368054chr19_46709310_-ENSG00000179364.12ENST00000447393hsa-miR-320e1053954661053954727mer-m8105395456105395473152-16.98
CAediting_1054808chr15_66496985_-ENSG00000179364.12ENST00000447393hsa-miR-45121053959021053959076mer105395889105395908141-24.33
CAediting_414656chr5_72878640_+ENSG00000179364.12ENST00000447393hsa-miR-4804-3p1053974571053974637mer-m8105397444105397464155-14.56
CAediting_524911chr7_5495852_-ENSG00000179364.12ENST00000447393hsa-miR-589-3p1053972581053972658mer-1a105397242105397265140-14.1
CAediting_748296chr10_51299626_+ENSG00000179364.12ENST00000447393hsa-miR-605-3p1053975821053975887mer-m8105397566105397589153-16.41
CAediting_580943chr7_100356700_+ENSG00000179364.12ENST00000447393hsa-miR-6840-3p1053957241053957307mer-1a105395710105395730142-36.54

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for PACS2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for PACS2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
HNSCCAediting_1022359chr14_105370619_+0.004368620805702360.296146960925818....
STADCAediting_1022359chr14_105370619_+0.042591483587780.264914489215524....
STADCAediting_1022368chr14_105370822_+0.02904910667643110.305871807157037....

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Relation with cancer stages for PACS2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
STADpathologic_stageCAediting_1022368chr14_105370822_+0.03376002674645760.300842628797662

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Relation with survival for PACS2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for PACS2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for PACS2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
PACS2C4748070EPILEPTIC ENCEPHALOPATHY, EARLY INFANTILE, 662GENOMICS_ENGLAND;UNIPROT
PACS2C0036572Seizures1GENOMICS_ENGLAND
PACS2C0557874Global developmental delay1GENOMICS_ENGLAND
PACS2C1866129Abnormality of the cerebellum1GENOMICS_ENGLAND
PACS2C3714756Intellectual Disability1GENOMICS_ENGLAND
PACS2C4237474Unspecified neurodevelopmental disorder1GENOMICS_ENGLAND