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Editing gene: GRAMD4 (CAeditome ID:23151)

Gene summary for GRAMD4

Gene summary

Gene information	Gene symbol	GRAMD4
	Gene ID	23151
	Gene name	GRAM domain containing 4
	Synonyms	DIP
	Cytomap	22q13.31
	Type of gene	protein-coding
	Description	GRAM domain-containing protein 4death-inducing-protein
	Modification date	20210518
	UniProtAcc	Q6IC98
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
GRAMD4	GO:0005739	GRAM domain-containing protein 4	15565177

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RNA A-to-I events for GRAMD4

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000075240.15

RNA A-to-I editing events in Cancer.

CAediting_1494496(46580805, +), CAediting_1494497(46580873, +), CAediting_1494498(46580899, +), CAediting_1494499(46586481, +), CAediting_1494500(46586525, +), CAediting_1494501(46586550, +), CAediting_1494502(46586573, +), CAediting_1494503(46586826, +), CAediting_1494504(46590832, +), CAediting_1494505(46590970, +), CAediting_1494506(46591004, +), CAediting_1494507(46591005, +), CAediting_1494508(46591606, +), CAediting_1494509(46591713, +), CAediting_1494510(46591745, +), CAediting_1494511(46591753, +), CAediting_1494512(46591754, +), CAediting_1494513(46591782, +), CAediting_1494514(46591783, +), CAediting_1494515(46591788, +), CAediting_1494516(46596680, +), CAediting_1494517(46601631, +), CAediting_1494518(46601634, +), CAediting_1494519(46601637, +), CAediting_1494520(46602406, +), CAediting_1494521(46602416, +), CAediting_1494522(46602422, +), CAediting_1494523(46602477, +), CAediting_1494524(46602578, +), CAediting_1494525(46611850, +), CAediting_1494526(46611942, +), CAediting_1494527(46611947, +), CAediting_1494528(46612143, +), CAediting_1494529(46612145, +), CAediting_1494530(46612272, +), CAediting_1494531(46634812, +), CAediting_1494532(46641036, +), CAediting_1494533(46669781, +), CAediting_1494534(46669788, +), CAediting_1494535(46670505, +), CAediting_1494536(46670622, +), CAediting_1494537(46670623, +), CAediting_1494538(46670627, +), CAediting_1494539(46670635, +), CAediting_1494540(46670661, +), CAediting_1494541(46670670, +), CAediting_1494542(46670700, +), CAediting_1494543(46670706, +), CAediting_1494544(46670723, +), CAediting_1494545(46670735, +), CAediting_1494546(46670780, +), CAediting_1494547(46670786, +), CAediting_1494548(46670787, +), CAediting_1494549(46670789, +), CAediting_1494550(46670796, +), CAediting_1494551(46670803, +), CAediting_1494552(46670806, +), CAediting_1494553(46670815, +), CAediting_1494554(46670863, +), CAediting_1494555(46670864, +), CAediting_1494556(46670865, +), CAediting_1494557(46671072, +), CAediting_1494558(46671257, +), CAediting_1494559(46671279, +), CAediting_1494560(46671288, +), CAediting_1494561(46671293, +), CAediting_1494562(46671333, +), CAediting_1494563(46671365, +), CAediting_1494564(46671366, +), CAediting_1494565(46671367, +), CAediting_1494566(46671378, +), CAediting_1494567(46671381, +), CAediting_1494568(46671382, +), CAediting_1494569(46671535, +), CAediting_1494570(46671558, +), CAediting_1494571(46671559, +), CAediting_1494572(46671584, +), CAediting_1494573(46671605, +), CAediting_1494574(46671611, +), CAediting_1494575(46671692, +), CAediting_1494576(46671693, +), CAediting_1494577(46671696, +), CAediting_1494578(46671717, +), CAediting_1494579(46671725, +), CAediting_1494580(46671729, +), CAediting_1494581(46671746, +), CAediting_1494582(46671779, +), CAediting_1494583(46671786, +), CAediting_1494584(46671790, +), CAediting_1494585(46671821, +), CAediting_1494586(46671822, +),

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RNA editing positional annotations for GRAMD4 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1494496	chr22_46580805_+	intronic
CAediting_1494497	chr22_46580873_+	intronic
CAediting_1494498	chr22_46580899_+	intronic
CAediting_1494499	chr22_46586481_+	intronic
CAediting_1494500	chr22_46586525_+	intronic
CAediting_1494501	chr22_46586550_+	intronic
CAediting_1494502	chr22_46586573_+	intronic
CAediting_1494503	chr22_46586826_+	intronic
CAediting_1494504	chr22_46590832_+	intronic
CAediting_1494505	chr22_46590970_+	intronic
CAediting_1494506	chr22_46591004_+	intronic
CAediting_1494507	chr22_46591005_+	intronic
CAediting_1494508	chr22_46591606_+	intronic
CAediting_1494509	chr22_46591713_+	intronic
CAediting_1494510	chr22_46591745_+	intronic
CAediting_1494511	chr22_46591753_+	intronic
CAediting_1494512	chr22_46591754_+	intronic
CAediting_1494513	chr22_46591782_+	intronic
CAediting_1494514	chr22_46591783_+	intronic
CAediting_1494515	chr22_46591788_+	intronic
CAediting_1494516	chr22_46596680_+	intronic
CAediting_1494517	chr22_46601631_+	intronic
CAediting_1494518	chr22_46601634_+	intronic
CAediting_1494519	chr22_46601637_+	intronic
CAediting_1494520	chr22_46602406_+	intronic
CAediting_1494521	chr22_46602416_+	intronic
CAediting_1494522	chr22_46602422_+	intronic
CAediting_1494523	chr22_46602477_+	intronic
CAediting_1494524	chr22_46602578_+	intronic
CAediting_1494525	chr22_46611850_+	intronic
CAediting_1494526	chr22_46611942_+	intronic
CAediting_1494527	chr22_46611947_+	intronic
CAediting_1494528	chr22_46612143_+	intronic
CAediting_1494529	chr22_46612145_+	intronic
CAediting_1494530	chr22_46612272_+	intronic
CAediting_1494531	chr22_46634812_+	ncRNA_intronic
CAediting_1494532	chr22_46641036_+	intronic
CAediting_1494533	chr22_46669781_+	intronic
CAediting_1494534	chr22_46669788_+	intronic
CAediting_1494535	chr22_46670505_+	intronic
CAediting_1494536	chr22_46670622_+	intronic
CAediting_1494537	chr22_46670623_+	intronic
CAediting_1494538	chr22_46670627_+	intronic
CAediting_1494539	chr22_46670635_+	intronic
CAediting_1494540	chr22_46670661_+	intronic
CAediting_1494541	chr22_46670670_+	intronic
CAediting_1494542	chr22_46670700_+	intronic
CAediting_1494543	chr22_46670706_+	intronic
CAediting_1494544	chr22_46670723_+	intronic
CAediting_1494545	chr22_46670735_+	intronic
CAediting_1494546	chr22_46670780_+	intronic
CAediting_1494547	chr22_46670786_+	intronic
CAediting_1494548	chr22_46670787_+	intronic
CAediting_1494549	chr22_46670789_+	intronic
CAediting_1494550	chr22_46670796_+	intronic
CAediting_1494551	chr22_46670803_+	intronic
CAediting_1494552	chr22_46670806_+	intronic
CAediting_1494553	chr22_46670815_+	intronic
CAediting_1494554	chr22_46670863_+	intronic
CAediting_1494555	chr22_46670864_+	intronic
CAediting_1494556	chr22_46670865_+	intronic
CAediting_1494557	chr22_46671072_+	exonic
CAediting_1494558	chr22_46671257_+	intronic
CAediting_1494559	chr22_46671279_+	intronic
CAediting_1494560	chr22_46671288_+	intronic
CAediting_1494561	chr22_46671293_+	intronic
CAediting_1494562	chr22_46671333_+	intronic
CAediting_1494563	chr22_46671365_+	intronic
CAediting_1494564	chr22_46671366_+	intronic
CAediting_1494565	chr22_46671367_+	intronic
CAediting_1494566	chr22_46671378_+	intronic
CAediting_1494567	chr22_46671381_+	intronic
CAediting_1494568	chr22_46671382_+	intronic
CAediting_1494569	chr22_46671535_+	intronic
CAediting_1494570	chr22_46671558_+	intronic
CAediting_1494571	chr22_46671559_+	intronic
CAediting_1494572	chr22_46671584_+	intronic
CAediting_1494573	chr22_46671605_+	intronic
CAediting_1494574	chr22_46671611_+	intronic
CAediting_1494575	chr22_46671692_+	intronic
CAediting_1494576	chr22_46671693_+	intronic
CAediting_1494577	chr22_46671696_+	intronic
CAediting_1494578	chr22_46671717_+	intronic
CAediting_1494579	chr22_46671725_+	intronic
CAediting_1494580	chr22_46671729_+	intronic
CAediting_1494581	chr22_46671746_+	intronic
CAediting_1494582	chr22_46671779_+	intronic
CAediting_1494583	chr22_46671786_+	intronic
CAediting_1494584	chr22_46671790_+	intronic
CAediting_1494585	chr22_46671821_+	intronic
CAediting_1494586	chr22_46671822_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1494496	chr22_46580805_+	SINE	Alu	AluSp
CAediting_1494497	chr22_46580873_+	SINE	Alu	AluSp
CAediting_1494498	chr22_46580899_+	SINE	Alu	AluSp
CAediting_1494504	chr22_46590832_+	SINE	Alu	AluSx1
CAediting_1494505	chr22_46590970_+	SINE	Alu	AluSx1
CAediting_1494506	chr22_46591004_+	SINE	Alu	AluSx1
CAediting_1494507	chr22_46591005_+	SINE	Alu	AluSx1
CAediting_1494508	chr22_46591606_+	SINE	Alu	AluSz6
CAediting_1494509	chr22_46591713_+	SINE	Alu	AluSz6
CAediting_1494510	chr22_46591745_+	SINE	Alu	AluSz6
CAediting_1494511	chr22_46591753_+	SINE	Alu	AluSz6
CAediting_1494512	chr22_46591754_+	SINE	Alu	AluSz6
CAediting_1494513	chr22_46591782_+	SINE	Alu	AluSz6
CAediting_1494514	chr22_46591783_+	SINE	Alu	AluSz6
CAediting_1494515	chr22_46591788_+	SINE	Alu	AluSz6
CAediting_1494516	chr22_46596680_+	SINE	Alu	AluSx
CAediting_1494517	chr22_46601631_+	SINE	Alu	AluJr
CAediting_1494518	chr22_46601634_+	SINE	Alu	AluJr
CAediting_1494519	chr22_46601637_+	SINE	Alu	AluJr
CAediting_1494520	chr22_46602406_+	SINE	Alu	AluJb
CAediting_1494521	chr22_46602416_+	SINE	Alu	AluJb
CAediting_1494522	chr22_46602422_+	SINE	Alu	AluJb
CAediting_1494523	chr22_46602477_+	SINE	Alu	AluJb
CAediting_1494524	chr22_46602578_+	SINE	Alu	AluJb
CAediting_1494525	chr22_46611850_+	SINE	Alu	AluY
CAediting_1494526	chr22_46611942_+	SINE	Alu	AluY
CAediting_1494527	chr22_46611947_+	SINE	Alu	AluY
CAediting_1494528	chr22_46612143_+	SINE	Alu	AluJo
CAediting_1494529	chr22_46612145_+	SINE	Alu	AluJo
CAediting_1494530	chr22_46612272_+	SINE	Alu	AluJo
CAediting_1494531	chr22_46634812_+	SINE	Alu	AluSx1
CAediting_1494532	chr22_46641036_+	SINE	Alu	FRAM
CAediting_1494533	chr22_46669781_+	SINE	Alu	AluSx1
CAediting_1494534	chr22_46669788_+	SINE	Alu	AluSx1
CAediting_1494536	chr22_46670622_+	SINE	Alu	AluSg
CAediting_1494537	chr22_46670623_+	SINE	Alu	AluSg
CAediting_1494538	chr22_46670627_+	SINE	Alu	AluSg
CAediting_1494539	chr22_46670635_+	SINE	Alu	AluSg
CAediting_1494540	chr22_46670661_+	SINE	Alu	AluSg
CAediting_1494541	chr22_46670670_+	SINE	Alu	AluSg
CAediting_1494542	chr22_46670700_+	SINE	Alu	AluSg
CAediting_1494543	chr22_46670706_+	SINE	Alu	AluSg
CAediting_1494544	chr22_46670723_+	SINE	Alu	AluSg
CAediting_1494545	chr22_46670735_+	SINE	Alu	AluSg
CAediting_1494546	chr22_46670780_+	SINE	Alu	AluSg
CAediting_1494547	chr22_46670786_+	SINE	Alu	AluSg
CAediting_1494548	chr22_46670787_+	SINE	Alu	AluSg
CAediting_1494549	chr22_46670789_+	SINE	Alu	AluSg
CAediting_1494550	chr22_46670796_+	SINE	Alu	AluSg
CAediting_1494551	chr22_46670803_+	SINE	Alu	AluSg
CAediting_1494552	chr22_46670806_+	SINE	Alu	AluSg
CAediting_1494553	chr22_46670815_+	SINE	Alu	AluSg
CAediting_1494554	chr22_46670863_+	SINE	Alu	AluSg
CAediting_1494555	chr22_46670864_+	SINE	Alu	AluSg
CAediting_1494556	chr22_46670865_+	SINE	Alu	AluSg
CAediting_1494559	chr22_46671279_+	SINE	Alu	AluSz
CAediting_1494560	chr22_46671288_+	SINE	Alu	AluSz
CAediting_1494561	chr22_46671293_+	SINE	Alu	AluSz
CAediting_1494562	chr22_46671333_+	SINE	Alu	AluSz
CAediting_1494563	chr22_46671365_+	SINE	Alu	AluSz
CAediting_1494564	chr22_46671366_+	SINE	Alu	AluSz
CAediting_1494565	chr22_46671367_+	SINE	Alu	AluSz
CAediting_1494566	chr22_46671378_+	SINE	Alu	AluSz
CAediting_1494567	chr22_46671381_+	SINE	Alu	AluSz
CAediting_1494568	chr22_46671382_+	SINE	Alu	AluSz
CAediting_1494569	chr22_46671535_+	SINE	Alu	AluJo
CAediting_1494570	chr22_46671558_+	SINE	Alu	AluJo
CAediting_1494571	chr22_46671559_+	SINE	Alu	AluJo
CAediting_1494572	chr22_46671584_+	SINE	Alu	AluJo
CAediting_1494573	chr22_46671605_+	SINE	Alu	AluJo
CAediting_1494574	chr22_46671611_+	SINE	Alu	AluJo
CAediting_1494575	chr22_46671692_+	Simple_repeat	Simple_repeat	(AAAAT)n
CAediting_1494576	chr22_46671693_+	Simple_repeat	Simple_repeat	(AAAAT)n
CAediting_1494577	chr22_46671696_+	SINE	Alu	AluJo
CAediting_1494578	chr22_46671717_+	SINE	Alu	AluJo
CAediting_1494579	chr22_46671725_+	SINE	Alu	AluJo
CAediting_1494580	chr22_46671729_+	SINE	Alu	AluJo
CAediting_1494581	chr22_46671746_+	SINE	Alu	AluJo
CAediting_1494582	chr22_46671779_+	SINE	Alu	AluJo
CAediting_1494583	chr22_46671786_+	SINE	Alu	AluJo
CAediting_1494584	chr22_46671790_+	SINE	Alu	AluJo
CAediting_1494585	chr22_46671821_+	SINE	Alu	AluJo
CAediting_1494586	chr22_46671822_+	SINE	Alu	AluJo

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RNA A-to-I editing events in the alternative splicing sites for GRAMD4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000075240.15.GRAMD4.

Correlation between RNA A-to-I editing and PSI for ENSG00000075240.15.GRAMD4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GRAMD4

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for GRAMD4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for GRAMD4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000075240.15	ENST00000406902	hsa-miR-605-3p	46677906	46677913	8mer-1a	46677893	46677913	141	-17.29
CAediting_846604	chr11_93733708_-	ENSG00000075240.15	ENST00000406902	hsa-miR-1304-3p	46678666	46678672	7mer-m8	46678652	46678673	151	-16.5
CAediting_748296	chr10_51299626_+	ENSG00000075240.15	ENST00000361034	hsa-miR-605-3p	46677906	46677913	8mer-1a	46677893	46677913	141	-17.29
CAediting_846604	chr11_93733708_-	ENSG00000075240.15	ENST00000361034	hsa-miR-1304-3p	46678666	46678672	7mer-m8	46678652	46678673	151	-16.5
CAediting_748296	chr10_51299626_+	ENSG00000075240.15	ENST00000408031	hsa-miR-605-3p	46677906	46677913	8mer-1a	46677893	46677913	141	-17.29
CAediting_846604	chr11_93733708_-	ENSG00000075240.15	ENST00000408031	hsa-miR-1304-3p	46678666	46678672	7mer-m8	46678652	46678673	151	-16.5
CAediting_1054808	chr15_66496985_-	ENSG00000075240.15	ENST00000406902	hsa-miR-4512	46679423	46679429	7mer-m8	46679409	46679430	140	-17.05
CAediting_1229413	chr17_67471544_+	ENSG00000075240.15	ENST00000406902	hsa-miR-548aa	46678774	46678781	8mer-1a	46678756	46678781	141	-13.33
CAediting_1306323	chr19_13836462_-	ENSG00000075240.15	ENST00000406902	hsa-miR-27a-3p	46678290	46678296	7mer-m8	46678277	46678297	152	-19.57
CAediting_77128	chr1_85133844_+	ENSG00000075240.15	ENST00000406902	hsa-miR-4423-3p	46679161	46679168	8mer-1a	46679148	46679168	140	-13.68
CAediting_524911	chr7_5495852_-	ENSG00000075240.15	ENST00000406902	hsa-miR-589-3p	46679470	46679475	6mer	46679453	46679476	141	-28.41
CAediting_1054808	chr15_66496985_-	ENSG00000075240.15	ENST00000361034	hsa-miR-4512	46679423	46679429	7mer-m8	46679409	46679430	140	-17.05
CAediting_1229413	chr17_67471544_+	ENSG00000075240.15	ENST00000361034	hsa-miR-548aa	46678774	46678781	8mer-1a	46678756	46678781	141	-13.33
CAediting_1306323	chr19_13836462_-	ENSG00000075240.15	ENST00000361034	hsa-miR-27a-3p	46678290	46678296	7mer-m8	46678277	46678297	152	-19.57
CAediting_77128	chr1_85133844_+	ENSG00000075240.15	ENST00000361034	hsa-miR-4423-3p	46679161	46679168	8mer-1a	46679148	46679168	140	-13.68
CAediting_524911	chr7_5495852_-	ENSG00000075240.15	ENST00000361034	hsa-miR-589-3p	46679470	46679475	6mer	46679453	46679476	141	-28.41
CAediting_1054808	chr15_66496985_-	ENSG00000075240.15	ENST00000408031	hsa-miR-4512	46679423	46679429	7mer-m8	46679409	46679430	140	-17.05
CAediting_1229413	chr17_67471544_+	ENSG00000075240.15	ENST00000408031	hsa-miR-548aa	46678774	46678781	8mer-1a	46678756	46678781	141	-13.33
CAediting_1306323	chr19_13836462_-	ENSG00000075240.15	ENST00000408031	hsa-miR-27a-3p	46678290	46678296	7mer-m8	46678277	46678297	152	-19.57
CAediting_77128	chr1_85133844_+	ENSG00000075240.15	ENST00000408031	hsa-miR-4423-3p	46679161	46679168	8mer-1a	46679148	46679168	140	-13.68
CAediting_524911	chr7_5495852_-	ENSG00000075240.15	ENST00000408031	hsa-miR-589-3p	46679470	46679475	6mer	46679453	46679476	141	-28.41
CAediting_1524209	chrX_134546392_-	ENSG00000075240.15	ENST00000406902	hsa-miR-503-5p	46679412	46679418	7mer-1a	46679396	46679418	145	-25.62
CAediting_1524209	chrX_134546392_-	ENSG00000075240.15	ENST00000361034	hsa-miR-503-5p	46679412	46679418	7mer-1a	46679396	46679418	145	-25.62
CAediting_1524209	chrX_134546392_-	ENSG00000075240.15	ENST00000408031	hsa-miR-503-5p	46679412	46679418	7mer-1a	46679396	46679418	145	-25.62

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_77128	chr1_85133844_+	ENSG00000075240.15	ENST00000406902	hsa-miR-4423-3p	46678362	46678368	7mer-m8	46678349	46678369	140	-10.01
CAediting_1054808	chr15_66496985_-	ENSG00000075240.15	ENST00000406902	hsa-miR-4512	46677512	46677518	7mer-m8	46677497	46677519	151	-26.39
CAediting_1524209	chrX_134546392_-	ENSG00000075240.15	ENST00000406902	hsa-miR-503-5p	46677982	46677987	6mer	46677967	46677988	141	-22.47
CAediting_1229413	chr17_67471544_+	ENSG00000075240.15	ENST00000406902	hsa-miR-548aa	46678678	46678684	7mer-m8	46678661	46678685	147	-9.95
CAediting_1229415	chr17_67471547_+	ENSG00000075240.15	ENST00000406902	hsa-miR-548aa	46678678	46678684	7mer-m8	46678661	46678685	147	-9.95
CAediting_980496	chr14_31014685_-	ENSG00000075240.15	ENST00000406902	hsa-miR-624-3p	46677619	46677625	7mer-m8	46677606	46677626	143	-19.87
CAediting_580943	chr7_100356700_+	ENSG00000075240.15	ENST00000406902	hsa-miR-6840-3p	46678311	46678316	6mer	46678296	46678317	140	-28.88
CAediting_580943	chr7_100356700_+	ENSG00000075240.15	ENST00000406902	hsa-miR-6840-3p	46677695	46677701	7mer-m8	46677681	46677702	140	-18.88
CAediting_77128	chr1_85133844_+	ENSG00000075240.15	ENST00000361034	hsa-miR-4423-3p	46678362	46678368	7mer-m8	46678349	46678369	140	-10.01
CAediting_1054808	chr15_66496985_-	ENSG00000075240.15	ENST00000361034	hsa-miR-4512	46677512	46677518	7mer-m8	46677497	46677519	151	-26.39
CAediting_1524209	chrX_134546392_-	ENSG00000075240.15	ENST00000361034	hsa-miR-503-5p	46677982	46677987	6mer	46677967	46677988	141	-22.47
CAediting_1229413	chr17_67471544_+	ENSG00000075240.15	ENST00000361034	hsa-miR-548aa	46678678	46678684	7mer-m8	46678661	46678685	147	-9.95
CAediting_1229415	chr17_67471547_+	ENSG00000075240.15	ENST00000361034	hsa-miR-548aa	46678678	46678684	7mer-m8	46678661	46678685	147	-9.95
CAediting_980496	chr14_31014685_-	ENSG00000075240.15	ENST00000361034	hsa-miR-624-3p	46677619	46677625	7mer-m8	46677606	46677626	143	-19.87
CAediting_580943	chr7_100356700_+	ENSG00000075240.15	ENST00000361034	hsa-miR-6840-3p	46678311	46678316	6mer	46678296	46678317	140	-28.88
CAediting_580943	chr7_100356700_+	ENSG00000075240.15	ENST00000361034	hsa-miR-6840-3p	46677695	46677701	7mer-m8	46677681	46677702	140	-18.88
CAediting_77128	chr1_85133844_+	ENSG00000075240.15	ENST00000408031	hsa-miR-4423-3p	46678362	46678368	7mer-m8	46678349	46678369	140	-10.01
CAediting_1054808	chr15_66496985_-	ENSG00000075240.15	ENST00000408031	hsa-miR-4512	46677512	46677518	7mer-m8	46677497	46677519	151	-26.39
CAediting_1524209	chrX_134546392_-	ENSG00000075240.15	ENST00000408031	hsa-miR-503-5p	46677982	46677987	6mer	46677967	46677988	141	-22.47
CAediting_1229413	chr17_67471544_+	ENSG00000075240.15	ENST00000408031	hsa-miR-548aa	46678678	46678684	7mer-m8	46678661	46678685	147	-9.95
CAediting_1229415	chr17_67471547_+	ENSG00000075240.15	ENST00000408031	hsa-miR-548aa	46678678	46678684	7mer-m8	46678661	46678685	147	-9.95
CAediting_980496	chr14_31014685_-	ENSG00000075240.15	ENST00000408031	hsa-miR-624-3p	46677619	46677625	7mer-m8	46677606	46677626	143	-19.87
CAediting_580943	chr7_100356700_+	ENSG00000075240.15	ENST00000408031	hsa-miR-6840-3p	46678311	46678316	6mer	46678296	46678317	140	-28.88
CAediting_580943	chr7_100356700_+	ENSG00000075240.15	ENST00000408031	hsa-miR-6840-3p	46677695	46677701	7mer-m8	46677681	46677702	140	-18.88

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for GRAMD4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for GRAMD4

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for GRAMD4

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_1494580	chr22_46671729_+	0.0219809841934428	0.295310755481286

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Relation with survival for GRAMD4

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for GRAMD4

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for GRAMD4

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene