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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: RRP1B (CAeditome ID:23076) |
Gene summary for RRP1B |
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Gene information | Gene symbol | RRP1B | Gene ID | 23076 |
Gene name | ribosomal RNA processing 1B | |
Synonyms | KIAA0179|NNP1L|Nnp1|PPP1R136|RRP1 | |
Cytomap | 21q22.3 | |
Type of gene | protein-coding | |
Description | ribosomal RNA processing protein 1 homolog BRRP1-like protein Bprotein phosphatase 1, regulatory subunit 136ribosomal RNA processing 1 homolog B | |
Modification date | 20210518 | |
UniProtAcc | Q14684 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
RRP1B | GO:0098586 | Ribosomal RNA processing protein 1 homolog B | 26311876 |
RRP1B | GO:0001652 | Ribosomal RNA processing protein 1 homolog B | 20926688 |
RRP1B | GO:0005654 | Ribosomal RNA processing protein 1 homolog B | 0000052 |
RRP1B | GO:0005694 | Ribosomal RNA processing protein 1 homolog B | 0000052 |
RRP1B | GO:0005730 | Ribosomal RNA processing protein 1 homolog B | 0000052 |
RRP1B | GO:0005730 | Ribosomal RNA processing protein 1 homolog B | 20040599 |
RRP1B | GO:0005730 | Ribosomal RNA processing protein 1 homolog B | 26311876 |
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RNA A-to-I events for RRP1B |
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CAediting_1455542(43663285, +), CAediting_1455543(43663289, +), CAediting_1455544(43663316, +), CAediting_1455545(43663321, +), CAediting_1455546(43663322, +), CAediting_1455547(43663324, +), CAediting_1455548(43663359, +), CAediting_1455549(43663365, +), CAediting_1455550(43663366, +), CAediting_1455551(43663369, +), CAediting_1455552(43663442, +), CAediting_1455553(43664183, +), CAediting_1455554(43664189, +), CAediting_1455555(43664190, +), CAediting_1455556(43664192, +), CAediting_1455557(43664201, +), CAediting_1455558(43664232, +), CAediting_1455559(43664238, +), CAediting_1455560(43664242, +), CAediting_1455561(43664251, +), CAediting_1455562(43664272, +), CAediting_1455563(43664273, +), CAediting_1455564(43664276, +), CAediting_1455565(43664277, +), CAediting_1455566(43664284, +), CAediting_1455567(43664287, +), CAediting_1455568(43664315, +), CAediting_1455569(43666558, +), CAediting_1455570(43666620, +), CAediting_1455571(43668089, +), CAediting_1455572(43668497, +), CAediting_1455573(43668554, +), CAediting_1455574(43668576, +), CAediting_1455575(43673370, +), CAediting_1455576(43674392, +), CAediting_1455577(43680479, +), CAediting_1455578(43680485, +), CAediting_1455579(43680661, +), CAediting_1455580(43680727, +), CAediting_1455581(43680821, +), CAediting_1455582(43681230, +), CAediting_1455583(43681742, +), CAediting_1455584(43681844, +), CAediting_1455585(43681866, +), CAediting_1455586(43681872, +), CAediting_1455587(43683073, +), |
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RNA editing positional annotations for RRP1B using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1455542 | chr21_43663285_+ | intronic |
CAediting_1455543 | chr21_43663289_+ | intronic |
CAediting_1455544 | chr21_43663316_+ | intronic |
CAediting_1455545 | chr21_43663321_+ | intronic |
CAediting_1455546 | chr21_43663322_+ | intronic |
CAediting_1455547 | chr21_43663324_+ | intronic |
CAediting_1455548 | chr21_43663359_+ | intronic |
CAediting_1455549 | chr21_43663365_+ | intronic |
CAediting_1455550 | chr21_43663366_+ | intronic |
CAediting_1455551 | chr21_43663369_+ | intronic |
CAediting_1455552 | chr21_43663442_+ | intronic |
CAediting_1455553 | chr21_43664183_+ | intronic |
CAediting_1455554 | chr21_43664189_+ | intronic |
CAediting_1455555 | chr21_43664190_+ | intronic |
CAediting_1455556 | chr21_43664192_+ | intronic |
CAediting_1455557 | chr21_43664201_+ | intronic |
CAediting_1455558 | chr21_43664232_+ | intronic |
CAediting_1455559 | chr21_43664238_+ | intronic |
CAediting_1455560 | chr21_43664242_+ | intronic |
CAediting_1455561 | chr21_43664251_+ | intronic |
CAediting_1455562 | chr21_43664272_+ | intronic |
CAediting_1455563 | chr21_43664273_+ | intronic |
CAediting_1455564 | chr21_43664276_+ | intronic |
CAediting_1455565 | chr21_43664277_+ | intronic |
CAediting_1455566 | chr21_43664284_+ | intronic |
CAediting_1455567 | chr21_43664287_+ | intronic |
CAediting_1455568 | chr21_43664315_+ | intronic |
CAediting_1455569 | chr21_43666558_+ | intronic |
CAediting_1455570 | chr21_43666620_+ | intronic |
CAediting_1455571 | chr21_43668089_+ | intronic |
CAediting_1455572 | chr21_43668497_+ | intronic |
CAediting_1455573 | chr21_43668554_+ | intronic |
CAediting_1455574 | chr21_43668576_+ | intronic |
CAediting_1455575 | chr21_43673370_+ | intronic |
CAediting_1455576 | chr21_43674392_+ | intronic |
CAediting_1455577 | chr21_43680479_+ | intronic |
CAediting_1455578 | chr21_43680485_+ | intronic |
CAediting_1455579 | chr21_43680661_+ | intronic |
CAediting_1455580 | chr21_43680727_+ | intronic |
CAediting_1455581 | chr21_43680821_+ | intronic |
CAediting_1455582 | chr21_43681230_+ | intronic |
CAediting_1455583 | chr21_43681742_+ | intronic |
CAediting_1455584 | chr21_43681844_+ | intronic |
CAediting_1455585 | chr21_43681866_+ | intronic |
CAediting_1455586 | chr21_43681872_+ | intronic |
CAediting_1455587 | chr21_43683073_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1455542 | chr21_43663285_+ | SINE | Alu | AluSq4 |
CAediting_1455543 | chr21_43663289_+ | SINE | Alu | AluSq4 |
CAediting_1455544 | chr21_43663316_+ | SINE | Alu | AluSq4 |
CAediting_1455545 | chr21_43663321_+ | SINE | Alu | AluSq4 |
CAediting_1455546 | chr21_43663322_+ | SINE | Alu | AluSq4 |
CAediting_1455547 | chr21_43663324_+ | SINE | Alu | AluSq4 |
CAediting_1455548 | chr21_43663359_+ | SINE | Alu | AluSq4 |
CAediting_1455549 | chr21_43663365_+ | SINE | Alu | AluSq4 |
CAediting_1455550 | chr21_43663366_+ | SINE | Alu | AluSq4 |
CAediting_1455551 | chr21_43663369_+ | SINE | Alu | AluSq4 |
CAediting_1455552 | chr21_43663442_+ | SINE | Alu | AluSq4 |
CAediting_1455553 | chr21_43664183_+ | SINE | Alu | AluSq4 |
CAediting_1455554 | chr21_43664189_+ | SINE | Alu | AluSq4 |
CAediting_1455555 | chr21_43664190_+ | SINE | Alu | AluSq4 |
CAediting_1455556 | chr21_43664192_+ | SINE | Alu | AluSq4 |
CAediting_1455557 | chr21_43664201_+ | SINE | Alu | AluSq4 |
CAediting_1455558 | chr21_43664232_+ | SINE | Alu | AluSq4 |
CAediting_1455559 | chr21_43664238_+ | SINE | Alu | AluSq4 |
CAediting_1455560 | chr21_43664242_+ | SINE | Alu | AluSq4 |
CAediting_1455561 | chr21_43664251_+ | SINE | Alu | AluSq4 |
CAediting_1455562 | chr21_43664272_+ | SINE | Alu | AluSq4 |
CAediting_1455563 | chr21_43664273_+ | SINE | Alu | AluSq4 |
CAediting_1455564 | chr21_43664276_+ | SINE | Alu | AluSq4 |
CAediting_1455565 | chr21_43664277_+ | SINE | Alu | AluSq4 |
CAediting_1455566 | chr21_43664284_+ | SINE | Alu | AluSq4 |
CAediting_1455567 | chr21_43664287_+ | SINE | Alu | AluSq4 |
CAediting_1455568 | chr21_43664315_+ | SINE | Alu | AluSq4 |
CAediting_1455569 | chr21_43666558_+ | SINE | Alu | AluSg4 |
CAediting_1455570 | chr21_43666620_+ | SINE | Alu | AluSg4 |
CAediting_1455571 | chr21_43668089_+ | SINE | Alu | AluSx |
CAediting_1455572 | chr21_43668497_+ | SINE | Alu | AluY |
CAediting_1455573 | chr21_43668554_+ | SINE | Alu | AluY |
CAediting_1455574 | chr21_43668576_+ | SINE | Alu | AluY |
CAediting_1455575 | chr21_43673370_+ | SINE | Alu | AluSx |
CAediting_1455576 | chr21_43674392_+ | SINE | Alu | AluSz6 |
CAediting_1455577 | chr21_43680479_+ | SINE | Alu | AluSx3 |
CAediting_1455578 | chr21_43680485_+ | SINE | Alu | AluSx3 |
CAediting_1455579 | chr21_43680661_+ | SINE | Alu | AluJo |
CAediting_1455580 | chr21_43680727_+ | SINE | Alu | AluJo |
CAediting_1455581 | chr21_43680821_+ | SINE | Alu | AluJo |
CAediting_1455582 | chr21_43681230_+ | SINE | Alu | AluSq |
CAediting_1455583 | chr21_43681742_+ | SINE | Alu | AluJb |
CAediting_1455584 | chr21_43681844_+ | SINE | Alu | AluJb |
CAediting_1455585 | chr21_43681866_+ | SINE | Alu | AluJb |
CAediting_1455586 | chr21_43681872_+ | SINE | Alu | AluJb |
CAediting_1455587 | chr21_43683073_+ | SINE | Alu | AluSx1 |
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RNA A-to-I editing events in the alternative splicing sites for RRP1B |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RRP1B |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for RRP1B |
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The effects of the RNA editing to the miRNA binding sites for RRP1B |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000160208.12 | ENST00000340648 | hsa-miR-605-3p | 43696069 | 43696075 | 7mer-m8 | 43696057 | 43696076 | 148 | -17.77 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000160208.12 | ENST00000340648 | hsa-miR-548aa | 43693806 | 43693812 | 7mer-m8 | 43693790 | 43693813 | 155 | -11.8 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000160208.12 | ENST00000340648 | hsa-miR-548aa | 43694787 | 43694793 | 7mer-m8 | 43694767 | 43694794 | 151 | -10.62 |
CAediting_1160181 | chr17_7017644_- | ENSG00000160208.12 | ENST00000340648 | hsa-miR-195-3p | 43695273 | 43695279 | 7mer-m8 | 43695258 | 43695280 | 155 | -19.1 |
CAediting_1399425 | chr20_1392958_- | ENSG00000160208.12 | ENST00000340648 | hsa-miR-6869-5p | 43694107 | 43694112 | 6mer | 43694092 | 43694113 | 143 | -25.87 |
CAediting_442554 | chr5_154685830_+ | ENSG00000160208.12 | ENST00000340648 | hsa-miR-1303 | 43694769 | 43694775 | 7mer-m8 | 43694750 | 43694776 | 157 | -27.42 |
CAediting_580943 | chr7_100356700_+ | ENSG00000160208.12 | ENST00000340648 | hsa-miR-6840-3p | 43694077 | 43694084 | 8mer-1a | 43694058 | 43694084 | 147 | -26.73 |
CAediting_468389 | chr6_31355314_- | ENSG00000160208.12 | ENST00000340648 | hsa-miR-6891-5p | 43694015 | 43694020 | 6mer | 43694003 | 43694021 | 144 | -20.02 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000160208.12 | ENST00000340648 | hsa-miR-320e | 43695229 | 43695234 | 6mer | 43695218 | 43695235 | 144 | -14.59 |
CAediting_1054808 | chr15_66496985_- | ENSG00000160208.12 | ENST00000340648 | hsa-miR-4512 | 43694938 | 43694944 | 7mer-m8 | 43694922 | 43694945 | 144 | -20.8 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000160208.12 | ENST00000340648 | hsa-miR-548aa | 43695649 | 43695655 | 7mer-m8 | 43695634 | 43695656 | 152 | -11.16 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000160208.12 | ENST00000340648 | hsa-miR-548aa | 43695649 | 43695655 | 7mer-m8 | 43695634 | 43695656 | 152 | -11.16 |
CAediting_524911 | chr7_5495852_- | ENSG00000160208.12 | ENST00000340648 | hsa-miR-589-3p | 43693866 | 43693872 | 7mer-m8 | 43693852 | 43693873 | 146 | -15.74 |
CAediting_468389 | chr6_31355314_- | ENSG00000160208.12 | ENST00000340648 | hsa-miR-6891-5p | 43694669 | 43694675 | 7mer-m8 | 43694658 | 43694676 | 149 | -16.96 |
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The effects of the RNA editing to the stability of the RNA structures for RRP1B |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for RRP1B |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for RRP1B |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for RRP1B |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for RRP1B |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for RRP1B |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |