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Editing gene: SETX (CAeditome ID:23064)

Gene summary for SETX

Gene summary

Gene information	Gene symbol	SETX
	Gene ID	23064
	Gene name	senataxin
	Synonyms	ALS4\|AOA2\|SCAN2\|SCAR1\|Sen1\|bA479K20.2
	Cytomap	9q34.13
	Type of gene	protein-coding
	Description	probable helicase senataxinSEN1 homologamyotrophic lateral sclerosis 4 protein
	Modification date	20210518
	UniProtAcc	Q7Z333
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SETX	GO:0001147	Probable helicase senataxin	21700224
SETX	GO:0000165	Probable helicase senataxin	21576111
SETX	GO:0006302	Probable helicase senataxin	17562789
SETX	GO:0006974	Probable helicase senataxin	17562789
SETX	GO:0008543	Probable helicase senataxin	21576111
SETX	GO:0010976	Probable helicase senataxin	21576111
SETX	GO:0034599	Probable helicase senataxin	17562789
SETX	GO:0043066	Probable helicase senataxin	21576111
SETX	GO:0043491	Probable helicase senataxin	21576111
SETX	GO:0044344	Probable helicase senataxin	21576111
SETX	GO:0070301	Probable helicase senataxin	17562789
SETX	GO:0071300	Probable helicase senataxin	21576111
SETX	GO:0000228	Probable helicase senataxin	24105744
SETX	GO:0005634	Probable helicase senataxin	17562789
SETX	GO:0005634	Probable helicase senataxin	21576111
SETX	GO:0005654	Probable helicase senataxin	0000052
SETX	GO:0005654	Probable helicase senataxin	17562789
SETX	GO:0005737	Probable helicase senataxin	17562789
SETX	GO:0005737	Probable helicase senataxin	21576111
SETX	GO:0016604	Probable helicase senataxin	0000052
SETX	GO:0030424	Probable helicase senataxin	21576111
SETX	GO:0030426	Probable helicase senataxin	21576111
SETX	GO:0045171	Probable helicase senataxin	0000052

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RNA A-to-I events for SETX

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000107290.12

RNA A-to-I editing events in Cancer.

CAediting_720781(132265293, -), CAediting_720782(132265294, -), CAediting_720783(132265323, -), CAediting_720784(132265331, -), CAediting_720785(132265337, -), CAediting_720786(132265354, -), CAediting_720787(132265358, -), CAediting_720788(132265405, -), CAediting_720789(132265406, -), CAediting_720790(132265409, -), CAediting_720791(132265420, -), CAediting_720792(132265421, -), CAediting_720793(132265422, -), CAediting_720794(132265425, -), CAediting_720795(132265454, -), CAediting_720796(132265496, -), CAediting_720797(132265497, -), CAediting_720798(132266515, -), CAediting_720799(132266521, -), CAediting_720800(132266527, -), CAediting_720801(132266528, -), CAediting_720802(132266589, -), CAediting_720803(132266609, -), CAediting_720804(132266664, -), CAediting_720805(132266679, -), CAediting_720806(132266690, -), CAediting_720807(132266715, -), CAediting_720808(132266720, -), CAediting_720809(132266726, -), CAediting_720810(132266728, -), CAediting_720811(132266758, -), CAediting_720812(132268306, -), CAediting_720813(132268307, -), CAediting_720814(132268308, -), CAediting_720815(132268328, -), CAediting_720816(132268339, -), CAediting_720817(132268340, -), CAediting_720818(132268348, -), CAediting_720819(132268363, -), CAediting_720820(132268389, -), CAediting_720821(132268418, -), CAediting_720822(132268439, -), CAediting_720823(132268444, -), CAediting_720824(132268449, -), CAediting_720825(132268455, -), CAediting_720826(132269193, -), CAediting_720827(132271318, -), CAediting_720828(132271319, -), CAediting_720829(132271334, -), CAediting_720830(132271338, -), CAediting_720831(132271346, -), CAediting_720832(132271453, -), CAediting_720833(132271991, -), CAediting_720834(132272007, -), CAediting_720835(132272193, -), CAediting_720836(132272428, -), CAediting_720837(132272430, -), CAediting_720838(132272967, -), CAediting_720839(132272980, -), CAediting_720840(132272987, -), CAediting_720841(132272989, -), CAediting_720842(132273001, -), CAediting_720843(132273002, -), CAediting_720844(132273003, -), CAediting_720845(132273049, -), CAediting_720846(132273050, -), CAediting_720847(132273060, -), CAediting_720848(132273061, -), CAediting_720849(132273065, -), CAediting_720850(132273067, -), CAediting_720851(132273070, -), CAediting_720852(132273251, -), CAediting_720853(132273357, -), CAediting_720854(132273444, -), CAediting_720855(132274461, -), CAediting_720856(132274514, -), CAediting_720857(132274518, -), CAediting_720858(132274580, -), CAediting_720859(132274602, -), CAediting_720860(132274673, -), CAediting_720861(132274696, -), CAediting_720862(132274702, -), CAediting_720863(132274713, -), CAediting_720864(132274718, -), CAediting_720865(132274719, -), CAediting_720866(132274725, -), CAediting_720867(132274727, -), CAediting_720868(132281782, -), CAediting_720869(132281914, -), CAediting_720870(132281936, -), CAediting_720871(132281996, -), CAediting_720872(132282345, -), CAediting_720873(132282369, -), CAediting_720874(132282370, -), CAediting_720875(132282404, -), CAediting_720876(132282410, -), CAediting_720877(132282421, -), CAediting_720878(132282450, -), CAediting_720879(132282454, -), CAediting_720880(132282514, -), CAediting_720881(132282563, -), CAediting_720882(132282569, -), CAediting_720883(132285017, -), CAediting_720884(132286147, -), CAediting_720885(132289943, -), CAediting_720886(132289964, -), CAediting_720887(132289965, -), CAediting_720888(132290006, -), CAediting_720889(132290026, -), CAediting_720890(132290039, -), CAediting_720891(132290043, -), CAediting_720892(132290046, -), CAediting_720893(132290052, -), CAediting_720894(132290060, -), CAediting_720895(132290074, -), CAediting_720896(132290085, -), CAediting_720897(132290087, -), CAediting_720898(132290115, -), CAediting_720899(132290147, -), CAediting_720900(132290188, -), CAediting_720901(132290539, -), CAediting_720902(132290644, -), CAediting_720903(132290665, -), CAediting_720904(132290774, -), CAediting_720905(132290801, -), CAediting_720906(132291219, -), CAediting_720907(132291241, -), CAediting_720908(132291243, -), CAediting_720909(132291263, -), CAediting_720910(132291272, -), CAediting_720911(132291275, -), CAediting_720912(132291278, -), CAediting_720913(132291282, -), CAediting_720914(132291288, -), CAediting_720915(132291295, -), CAediting_720916(132291305, -), CAediting_720917(132291331, -), CAediting_720918(132291334, -), CAediting_720919(132291335, -), CAediting_720920(132291336, -), CAediting_720921(132291337, -), CAediting_720922(132291338, -), CAediting_720923(132291341, -), CAediting_720924(132291344, -), CAediting_720925(132291345, -), CAediting_720926(132291347, -), CAediting_720927(132291356, -), CAediting_720928(132291361, -), CAediting_720929(132291362, -), CAediting_720930(132291363, -), CAediting_720931(132291367, -), CAediting_720932(132291369, -), CAediting_720933(132291371, -), CAediting_720934(132291412, -), CAediting_720935(132291416, -), CAediting_720936(132291433, -), CAediting_720937(132291438, -), CAediting_720938(132291447, -), CAediting_720939(132291456, -), CAediting_720940(132292184, -), CAediting_720941(132292257, -), CAediting_720942(132292261, -), CAediting_720943(132292263, -), CAediting_720944(132292317, -), CAediting_720945(132292393, -), CAediting_720946(132292702, -), CAediting_720947(132292706, -), CAediting_720948(132292726, -), CAediting_720949(132292727, -), CAediting_720950(132292758, -), CAediting_720951(132292762, -), CAediting_720952(132292768, -), CAediting_720953(132292802, -), CAediting_720954(132292806, -), CAediting_720955(132292808, -), CAediting_720956(132292809, -), CAediting_720957(132292840, -), CAediting_720958(132292855, -), CAediting_720959(132292856, -), CAediting_720960(132292909, -), CAediting_720961(132292910, -), CAediting_720962(132293449, -), CAediting_720963(132293474, -), CAediting_720964(132293559, -), CAediting_720965(132293586, -), CAediting_720966(132293623, -), CAediting_720967(132293624, -), CAediting_720968(132293633, -), CAediting_720969(132293693, -), CAediting_720970(132293695, -), CAediting_720971(132293948, -), CAediting_720972(132294020, -), CAediting_720973(132301268, -), CAediting_720974(132303146, -), CAediting_720975(132303182, -), CAediting_720976(132303282, -), CAediting_720977(132306852, -), CAediting_720978(132313953, -), CAediting_720979(132313959, -), CAediting_720980(132313998, -), CAediting_720981(132314004, -), CAediting_720982(132314024, -), CAediting_720983(132314028, -), CAediting_720984(132314127, -), CAediting_720985(132314230, -), CAediting_720986(132314503, -), CAediting_720987(132315024, -), CAediting_720988(132315050, -), CAediting_720989(132315051, -), CAediting_720990(132315061, -), CAediting_720991(132315077, -), CAediting_720992(132315082, -), CAediting_720993(132315086, -), CAediting_720994(132315089, -), CAediting_720995(132315090, -), CAediting_720996(132315091, -), CAediting_720997(132315095, -), CAediting_720998(132315106, -), CAediting_720999(132315107, -), CAediting_721000(132315108, -), CAediting_721001(132315118, -), CAediting_721002(132315132, -), CAediting_721003(132315141, -), CAediting_721004(132315189, -), CAediting_721005(132315198, -), CAediting_721006(132315206, -), CAediting_721007(132315208, -), CAediting_721008(132315212, -), CAediting_721009(132317758, -), CAediting_721010(132320319, -), CAediting_721011(132320386, -), CAediting_721012(132320472, -), CAediting_721013(132323890, -), CAediting_721014(132325234, -), CAediting_721015(132325244, -), CAediting_721016(132325256, -), CAediting_721017(132325274, -), CAediting_721018(132325294, -), CAediting_721019(132325330, -), CAediting_721020(132325351, -), CAediting_721021(132325682, -), CAediting_721022(132325710, -), CAediting_721023(132325832, -), CAediting_721024(132325856, -), CAediting_721025(132335616, -), CAediting_721026(132337053, -), CAediting_721027(132338168, -), CAediting_721028(132338177, -), CAediting_721029(132338184, -), CAediting_721030(132338216, -), CAediting_721031(132338256, -), CAediting_721032(132338297, -), CAediting_721033(132338320, -), CAediting_721034(132338364, -), CAediting_721035(132338966, -), CAediting_721036(132338982, -), CAediting_721037(132338986, -), CAediting_721038(132338989, -), CAediting_721039(132338994, -), CAediting_721040(132339227, -), CAediting_721041(132339317, -), CAediting_721042(132339371, -), CAediting_721043(132339377, -), CAediting_721044(132339390, -), CAediting_721045(132339447, -), CAediting_721046(132339709, -), CAediting_721047(132341091, -), CAediting_721048(132341102, -), CAediting_721049(132341103, -), CAediting_721050(132341128, -), CAediting_721051(132341136, -), CAediting_721052(132341175, -), CAediting_721053(132344252, -), CAediting_721054(132344279, -), CAediting_721055(132344286, -), CAediting_721056(132344311, -), CAediting_721057(132344329, -), CAediting_721058(132344352, -), CAediting_721059(132344378, -), CAediting_721060(132344678, -), CAediting_721061(132345772, -), CAediting_721062(132345933, -), CAediting_721063(132346722, -),

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RNA editing positional annotations for SETX using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_720781	chr9_132265293_-	ncRNA_intronic
CAediting_720782	chr9_132265294_-	ncRNA_intronic
CAediting_720783	chr9_132265323_-	ncRNA_intronic
CAediting_720784	chr9_132265331_-	ncRNA_intronic
CAediting_720785	chr9_132265337_-	ncRNA_intronic
CAediting_720786	chr9_132265354_-	ncRNA_intronic
CAediting_720787	chr9_132265358_-	ncRNA_intronic
CAediting_720788	chr9_132265405_-	ncRNA_intronic
CAediting_720789	chr9_132265406_-	ncRNA_intronic
CAediting_720790	chr9_132265409_-	ncRNA_intronic
CAediting_720791	chr9_132265420_-	ncRNA_intronic
CAediting_720792	chr9_132265421_-	ncRNA_intronic
CAediting_720793	chr9_132265422_-	ncRNA_intronic
CAediting_720794	chr9_132265425_-	ncRNA_intronic
CAediting_720795	chr9_132265454_-	ncRNA_intronic
CAediting_720796	chr9_132265496_-	ncRNA_intronic
CAediting_720797	chr9_132265497_-	ncRNA_intronic
CAediting_720798	chr9_132266515_-	ncRNA_intronic
CAediting_720799	chr9_132266521_-	ncRNA_intronic
CAediting_720800	chr9_132266527_-	ncRNA_intronic
CAediting_720801	chr9_132266528_-	ncRNA_intronic
CAediting_720802	chr9_132266589_-	ncRNA_intronic
CAediting_720803	chr9_132266609_-	ncRNA_intronic
CAediting_720804	chr9_132266664_-	ncRNA_intronic
CAediting_720805	chr9_132266679_-	ncRNA_intronic
CAediting_720806	chr9_132266690_-	ncRNA_intronic
CAediting_720807	chr9_132266715_-	ncRNA_intronic
CAediting_720808	chr9_132266720_-	ncRNA_intronic
CAediting_720809	chr9_132266726_-	ncRNA_intronic
CAediting_720810	chr9_132266728_-	ncRNA_intronic
CAediting_720811	chr9_132266758_-	ncRNA_intronic
CAediting_720812	chr9_132268306_-	ncRNA_intronic
CAediting_720813	chr9_132268307_-	ncRNA_intronic
CAediting_720814	chr9_132268308_-	ncRNA_intronic
CAediting_720815	chr9_132268328_-	ncRNA_intronic
CAediting_720816	chr9_132268339_-	ncRNA_intronic
CAediting_720817	chr9_132268340_-	ncRNA_intronic
CAediting_720818	chr9_132268348_-	ncRNA_intronic
CAediting_720819	chr9_132268363_-	ncRNA_intronic
CAediting_720820	chr9_132268389_-	ncRNA_intronic
CAediting_720821	chr9_132268418_-	ncRNA_intronic
CAediting_720822	chr9_132268439_-	ncRNA_intronic
CAediting_720823	chr9_132268444_-	ncRNA_intronic
CAediting_720824	chr9_132268449_-	ncRNA_intronic
CAediting_720825	chr9_132268455_-	ncRNA_intronic
CAediting_720826	chr9_132269193_-	ncRNA_intronic
CAediting_720827	chr9_132271318_-	ncRNA_intronic
CAediting_720828	chr9_132271319_-	ncRNA_intronic
CAediting_720829	chr9_132271334_-	ncRNA_intronic
CAediting_720830	chr9_132271338_-	ncRNA_intronic
CAediting_720831	chr9_132271346_-	ncRNA_intronic
CAediting_720832	chr9_132271453_-	ncRNA_intronic
CAediting_720833	chr9_132271991_-	ncRNA_intronic
CAediting_720834	chr9_132272007_-	ncRNA_intronic
CAediting_720835	chr9_132272193_-	ncRNA_intronic
CAediting_720836	chr9_132272428_-	ncRNA_intronic
CAediting_720837	chr9_132272430_-	ncRNA_intronic
CAediting_720838	chr9_132272967_-	ncRNA_intronic
CAediting_720839	chr9_132272980_-	ncRNA_intronic
CAediting_720840	chr9_132272987_-	ncRNA_intronic
CAediting_720841	chr9_132272989_-	ncRNA_intronic
CAediting_720842	chr9_132273001_-	ncRNA_intronic
CAediting_720843	chr9_132273002_-	ncRNA_intronic
CAediting_720844	chr9_132273003_-	ncRNA_intronic
CAediting_720845	chr9_132273049_-	ncRNA_intronic
CAediting_720846	chr9_132273050_-	ncRNA_intronic
CAediting_720847	chr9_132273060_-	ncRNA_intronic
CAediting_720848	chr9_132273061_-	ncRNA_intronic
CAediting_720849	chr9_132273065_-	ncRNA_intronic
CAediting_720850	chr9_132273067_-	ncRNA_intronic
CAediting_720851	chr9_132273070_-	ncRNA_intronic
CAediting_720852	chr9_132273251_-	ncRNA_intronic
CAediting_720853	chr9_132273357_-	ncRNA_intronic
CAediting_720854	chr9_132273444_-	ncRNA_intronic
CAediting_720855	chr9_132274461_-	ncRNA_intronic
CAediting_720856	chr9_132274514_-	ncRNA_intronic
CAediting_720857	chr9_132274518_-	ncRNA_intronic
CAediting_720858	chr9_132274580_-	ncRNA_intronic
CAediting_720859	chr9_132274602_-	ncRNA_intronic
CAediting_720860	chr9_132274673_-	ncRNA_intronic
CAediting_720861	chr9_132274696_-	ncRNA_intronic
CAediting_720862	chr9_132274702_-	ncRNA_intronic
CAediting_720863	chr9_132274713_-	ncRNA_intronic
CAediting_720864	chr9_132274718_-	ncRNA_intronic
CAediting_720865	chr9_132274719_-	ncRNA_intronic
CAediting_720866	chr9_132274725_-	ncRNA_intronic
CAediting_720867	chr9_132274727_-	ncRNA_intronic
CAediting_720868	chr9_132281782_-	intronic
CAediting_720869	chr9_132281914_-	intronic
CAediting_720870	chr9_132281936_-	intronic
CAediting_720871	chr9_132281996_-	intronic
CAediting_720872	chr9_132282345_-	intronic
CAediting_720873	chr9_132282369_-	intronic
CAediting_720874	chr9_132282370_-	intronic
CAediting_720875	chr9_132282404_-	intronic
CAediting_720876	chr9_132282410_-	intronic
CAediting_720877	chr9_132282421_-	intronic
CAediting_720878	chr9_132282450_-	intronic
CAediting_720879	chr9_132282454_-	intronic
CAediting_720880	chr9_132282514_-	intronic
CAediting_720881	chr9_132282563_-	intronic
CAediting_720882	chr9_132282569_-	intronic
CAediting_720883	chr9_132285017_-	ncRNA_intronic
CAediting_720884	chr9_132286147_-	ncRNA_intronic
CAediting_720885	chr9_132289943_-	intronic
CAediting_720886	chr9_132289964_-	intronic
CAediting_720887	chr9_132289965_-	intronic
CAediting_720888	chr9_132290006_-	intronic
CAediting_720889	chr9_132290026_-	intronic
CAediting_720890	chr9_132290039_-	intronic
CAediting_720891	chr9_132290043_-	intronic
CAediting_720892	chr9_132290046_-	intronic
CAediting_720893	chr9_132290052_-	intronic
CAediting_720894	chr9_132290060_-	intronic
CAediting_720895	chr9_132290074_-	intronic
CAediting_720896	chr9_132290085_-	intronic
CAediting_720897	chr9_132290087_-	intronic
CAediting_720898	chr9_132290115_-	intronic
CAediting_720899	chr9_132290147_-	intronic
CAediting_720900	chr9_132290188_-	intronic
CAediting_720901	chr9_132290539_-	intronic
CAediting_720902	chr9_132290644_-	intronic
CAediting_720903	chr9_132290665_-	intronic
CAediting_720904	chr9_132290774_-	intronic
CAediting_720905	chr9_132290801_-	intronic
CAediting_720906	chr9_132291219_-	intronic
CAediting_720907	chr9_132291241_-	intronic
CAediting_720908	chr9_132291243_-	intronic
CAediting_720909	chr9_132291263_-	intronic
CAediting_720910	chr9_132291272_-	intronic
CAediting_720911	chr9_132291275_-	intronic
CAediting_720912	chr9_132291278_-	intronic
CAediting_720913	chr9_132291282_-	intronic
CAediting_720914	chr9_132291288_-	intronic
CAediting_720915	chr9_132291295_-	intronic
CAediting_720916	chr9_132291305_-	intronic
CAediting_720917	chr9_132291331_-	intronic
CAediting_720918	chr9_132291334_-	intronic
CAediting_720919	chr9_132291335_-	intronic
CAediting_720920	chr9_132291336_-	intronic
CAediting_720921	chr9_132291337_-	intronic
CAediting_720922	chr9_132291338_-	intronic
CAediting_720923	chr9_132291341_-	intronic
CAediting_720924	chr9_132291344_-	intronic
CAediting_720925	chr9_132291345_-	intronic
CAediting_720926	chr9_132291347_-	intronic
CAediting_720927	chr9_132291356_-	intronic
CAediting_720928	chr9_132291361_-	intronic
CAediting_720929	chr9_132291362_-	intronic
CAediting_720930	chr9_132291363_-	intronic
CAediting_720931	chr9_132291367_-	intronic
CAediting_720932	chr9_132291369_-	intronic
CAediting_720933	chr9_132291371_-	intronic
CAediting_720934	chr9_132291412_-	intronic
CAediting_720935	chr9_132291416_-	intronic
CAediting_720936	chr9_132291433_-	intronic
CAediting_720937	chr9_132291438_-	intronic
CAediting_720938	chr9_132291447_-	intronic
CAediting_720939	chr9_132291456_-	intronic
CAediting_720940	chr9_132292184_-	intronic
CAediting_720941	chr9_132292257_-	intronic
CAediting_720942	chr9_132292261_-	intronic
CAediting_720943	chr9_132292263_-	intronic
CAediting_720944	chr9_132292317_-	intronic
CAediting_720945	chr9_132292393_-	intronic
CAediting_720946	chr9_132292702_-	intronic
CAediting_720947	chr9_132292706_-	intronic
CAediting_720948	chr9_132292726_-	intronic
CAediting_720949	chr9_132292727_-	intronic
CAediting_720950	chr9_132292758_-	intronic
CAediting_720951	chr9_132292762_-	intronic
CAediting_720952	chr9_132292768_-	intronic
CAediting_720953	chr9_132292802_-	intronic
CAediting_720954	chr9_132292806_-	intronic
CAediting_720955	chr9_132292808_-	intronic
CAediting_720956	chr9_132292809_-	intronic
CAediting_720957	chr9_132292840_-	intronic
CAediting_720958	chr9_132292855_-	intronic
CAediting_720959	chr9_132292856_-	intronic
CAediting_720960	chr9_132292909_-	intronic
CAediting_720961	chr9_132292910_-	intronic
CAediting_720962	chr9_132293449_-	intronic
CAediting_720963	chr9_132293474_-	intronic
CAediting_720964	chr9_132293559_-	intronic
CAediting_720965	chr9_132293586_-	intronic
CAediting_720966	chr9_132293623_-	intronic
CAediting_720967	chr9_132293624_-	intronic
CAediting_720968	chr9_132293633_-	intronic
CAediting_720969	chr9_132293693_-	intronic
CAediting_720970	chr9_132293695_-	intronic
CAediting_720971	chr9_132293948_-	intronic
CAediting_720972	chr9_132294020_-	intronic
CAediting_720973	chr9_132301268_-	intronic
CAediting_720974	chr9_132303146_-	intronic
CAediting_720975	chr9_132303182_-	intronic
CAediting_720976	chr9_132303282_-	intronic
CAediting_720977	chr9_132306852_-	intronic
CAediting_720978	chr9_132313953_-	intronic
CAediting_720979	chr9_132313959_-	intronic
CAediting_720980	chr9_132313998_-	intronic
CAediting_720981	chr9_132314004_-	intronic
CAediting_720982	chr9_132314024_-	intronic
CAediting_720983	chr9_132314028_-	intronic
CAediting_720984	chr9_132314127_-	intronic
CAediting_720985	chr9_132314230_-	intronic
CAediting_720986	chr9_132314503_-	intronic
CAediting_720987	chr9_132315024_-	intronic
CAediting_720988	chr9_132315050_-	intronic
CAediting_720989	chr9_132315051_-	intronic
CAediting_720990	chr9_132315061_-	intronic
CAediting_720991	chr9_132315077_-	intronic
CAediting_720992	chr9_132315082_-	intronic
CAediting_720993	chr9_132315086_-	intronic
CAediting_720994	chr9_132315089_-	intronic
CAediting_720995	chr9_132315090_-	intronic
CAediting_720996	chr9_132315091_-	intronic
CAediting_720997	chr9_132315095_-	intronic
CAediting_720998	chr9_132315106_-	intronic
CAediting_720999	chr9_132315107_-	intronic
CAediting_721000	chr9_132315108_-	intronic
CAediting_721001	chr9_132315118_-	intronic
CAediting_721002	chr9_132315132_-	intronic
CAediting_721003	chr9_132315141_-	intronic
CAediting_721004	chr9_132315189_-	intronic
CAediting_721005	chr9_132315198_-	intronic
CAediting_721006	chr9_132315206_-	intronic
CAediting_721007	chr9_132315208_-	intronic
CAediting_721008	chr9_132315212_-	intronic
CAediting_721009	chr9_132317758_-	intronic
CAediting_721010	chr9_132320319_-	intronic
CAediting_721011	chr9_132320386_-	intronic
CAediting_721012	chr9_132320472_-	intronic
CAediting_721013	chr9_132323890_-	intronic
CAediting_721014	chr9_132325234_-	intronic
CAediting_721015	chr9_132325244_-	intronic
CAediting_721016	chr9_132325256_-	intronic
CAediting_721017	chr9_132325274_-	intronic
CAediting_721018	chr9_132325294_-	intronic
CAediting_721019	chr9_132325330_-	intronic
CAediting_721020	chr9_132325351_-	intronic
CAediting_721021	chr9_132325682_-	intronic
CAediting_721022	chr9_132325710_-	intronic
CAediting_721023	chr9_132325832_-	intronic
CAediting_721024	chr9_132325856_-	intronic
CAediting_721025	chr9_132335616_-	intronic
CAediting_721026	chr9_132337053_-	intronic
CAediting_721027	chr9_132338168_-	intronic
CAediting_721028	chr9_132338177_-	intronic
CAediting_721029	chr9_132338184_-	intronic
CAediting_721030	chr9_132338216_-	intronic
CAediting_721031	chr9_132338256_-	intronic
CAediting_721032	chr9_132338297_-	intronic
CAediting_721033	chr9_132338320_-	intronic
CAediting_721034	chr9_132338364_-	intronic
CAediting_721035	chr9_132338966_-	intronic
CAediting_721036	chr9_132338982_-	intronic
CAediting_721037	chr9_132338986_-	intronic
CAediting_721038	chr9_132338989_-	intronic
CAediting_721039	chr9_132338994_-	intronic
CAediting_721040	chr9_132339227_-	intronic
CAediting_721041	chr9_132339317_-	intronic
CAediting_721042	chr9_132339371_-	intronic
CAediting_721043	chr9_132339377_-	intronic
CAediting_721044	chr9_132339390_-	intronic
CAediting_721045	chr9_132339447_-	intronic
CAediting_721046	chr9_132339709_-	intronic
CAediting_721047	chr9_132341091_-	intronic
CAediting_721048	chr9_132341102_-	intronic
CAediting_721049	chr9_132341103_-	intronic
CAediting_721050	chr9_132341128_-	intronic
CAediting_721051	chr9_132341136_-	intronic
CAediting_721052	chr9_132341175_-	intronic
CAediting_721053	chr9_132344252_-	intronic
CAediting_721054	chr9_132344279_-	intronic
CAediting_721055	chr9_132344286_-	intronic
CAediting_721056	chr9_132344311_-	intronic
CAediting_721057	chr9_132344329_-	intronic
CAediting_721058	chr9_132344352_-	intronic
CAediting_721059	chr9_132344378_-	intronic
CAediting_721060	chr9_132344678_-	intronic
CAediting_721061	chr9_132345772_-	intronic
CAediting_721062	chr9_132345933_-	intronic
CAediting_721063	chr9_132346722_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_720781	chr9_132265293_-	SINE	Alu	AluY
CAediting_720782	chr9_132265294_-	SINE	Alu	AluY
CAediting_720783	chr9_132265323_-	SINE	Alu	AluY
CAediting_720784	chr9_132265331_-	SINE	Alu	AluY
CAediting_720785	chr9_132265337_-	SINE	Alu	AluY
CAediting_720786	chr9_132265354_-	SINE	Alu	AluY
CAediting_720787	chr9_132265358_-	SINE	Alu	AluY
CAediting_720788	chr9_132265405_-	SINE	Alu	AluY
CAediting_720789	chr9_132265406_-	SINE	Alu	AluY
CAediting_720790	chr9_132265409_-	SINE	Alu	AluY
CAediting_720791	chr9_132265420_-	SINE	Alu	AluY
CAediting_720792	chr9_132265421_-	SINE	Alu	AluY
CAediting_720793	chr9_132265422_-	SINE	Alu	AluY
CAediting_720794	chr9_132265425_-	SINE	Alu	AluY
CAediting_720795	chr9_132265454_-	SINE	Alu	AluY
CAediting_720796	chr9_132265496_-	SINE	Alu	AluY
CAediting_720797	chr9_132265497_-	SINE	Alu	AluY
CAediting_720798	chr9_132266515_-	SINE	Alu	AluSx
CAediting_720799	chr9_132266521_-	SINE	Alu	AluSx
CAediting_720800	chr9_132266527_-	SINE	Alu	AluSx
CAediting_720801	chr9_132266528_-	SINE	Alu	AluSx
CAediting_720802	chr9_132266589_-	SINE	Alu	AluSx
CAediting_720803	chr9_132266609_-	SINE	Alu	AluSx
CAediting_720804	chr9_132266664_-	SINE	Alu	AluSx
CAediting_720805	chr9_132266679_-	SINE	Alu	AluSx
CAediting_720806	chr9_132266690_-	SINE	Alu	AluSx
CAediting_720807	chr9_132266715_-	SINE	Alu	AluSx
CAediting_720808	chr9_132266720_-	SINE	Alu	AluSx
CAediting_720809	chr9_132266726_-	SINE	Alu	AluSx
CAediting_720810	chr9_132266728_-	SINE	Alu	AluSx
CAediting_720811	chr9_132266758_-	SINE	Alu	AluSx
CAediting_720812	chr9_132268306_-	SINE	Alu	AluJb
CAediting_720813	chr9_132268307_-	SINE	Alu	AluJb
CAediting_720814	chr9_132268308_-	SINE	Alu	AluJb
CAediting_720815	chr9_132268328_-	SINE	Alu	AluJb
CAediting_720816	chr9_132268339_-	SINE	Alu	AluJb
CAediting_720817	chr9_132268340_-	SINE	Alu	AluJb
CAediting_720818	chr9_132268348_-	SINE	Alu	AluJb
CAediting_720819	chr9_132268363_-	SINE	Alu	AluJb
CAediting_720820	chr9_132268389_-	SINE	Alu	AluJb
CAediting_720821	chr9_132268418_-	SINE	Alu	AluJb
CAediting_720822	chr9_132268439_-	SINE	Alu	AluJb
CAediting_720823	chr9_132268444_-	SINE	Alu	AluJb
CAediting_720824	chr9_132268449_-	SINE	Alu	AluJb
CAediting_720825	chr9_132268455_-	SINE	Alu	AluJb
CAediting_720827	chr9_132271318_-	SINE	Alu	AluJb
CAediting_720828	chr9_132271319_-	SINE	Alu	AluJb
CAediting_720829	chr9_132271334_-	SINE	Alu	AluJb
CAediting_720830	chr9_132271338_-	SINE	Alu	AluJb
CAediting_720831	chr9_132271346_-	SINE	Alu	AluJb
CAediting_720832	chr9_132271453_-	SINE	Alu	AluJb
CAediting_720833	chr9_132271991_-	SINE	Alu	AluYc
CAediting_720834	chr9_132272007_-	SINE	Alu	AluYc
CAediting_720835	chr9_132272193_-	SINE	Alu	AluJr4
CAediting_720836	chr9_132272428_-	SINE	Alu	AluJr4
CAediting_720837	chr9_132272430_-	SINE	Alu	AluJr4
CAediting_720838	chr9_132272967_-	SINE	Alu	AluJo
CAediting_720839	chr9_132272980_-	SINE	Alu	AluJo
CAediting_720840	chr9_132272987_-	SINE	Alu	AluJo
CAediting_720841	chr9_132272989_-	SINE	Alu	AluJo
CAediting_720842	chr9_132273001_-	SINE	Alu	AluJo
CAediting_720843	chr9_132273002_-	SINE	Alu	AluJo
CAediting_720844	chr9_132273003_-	SINE	Alu	AluJo
CAediting_720845	chr9_132273049_-	SINE	Alu	AluJo
CAediting_720846	chr9_132273050_-	SINE	Alu	AluJo
CAediting_720847	chr9_132273060_-	SINE	Alu	AluJo
CAediting_720848	chr9_132273061_-	SINE	Alu	AluJo
CAediting_720849	chr9_132273065_-	SINE	Alu	AluJo
CAediting_720850	chr9_132273067_-	SINE	Alu	AluJo
CAediting_720851	chr9_132273070_-	SINE	Alu	AluJo
CAediting_720852	chr9_132273251_-	SINE	Alu	AluSq2
CAediting_720853	chr9_132273357_-	SINE	Alu	AluSq2
CAediting_720854	chr9_132273444_-	SINE	Alu	AluSq2
CAediting_720855	chr9_132274461_-	SINE	Alu	AluSx
CAediting_720856	chr9_132274514_-	SINE	Alu	AluSx
CAediting_720857	chr9_132274518_-	SINE	Alu	AluSx
CAediting_720858	chr9_132274580_-	SINE	Alu	AluSx
CAediting_720859	chr9_132274602_-	SINE	Alu	AluSx
CAediting_720860	chr9_132274673_-	SINE	Alu	AluSx
CAediting_720861	chr9_132274696_-	SINE	Alu	AluSx
CAediting_720862	chr9_132274702_-	SINE	Alu	AluSx
CAediting_720863	chr9_132274713_-	SINE	Alu	AluSx
CAediting_720864	chr9_132274718_-	SINE	Alu	AluSx
CAediting_720865	chr9_132274719_-	SINE	Alu	AluSx
CAediting_720866	chr9_132274725_-	SINE	Alu	AluSx
CAediting_720867	chr9_132274727_-	SINE	Alu	AluSx
CAediting_720868	chr9_132281782_-	SINE	Alu	AluSx1
CAediting_720869	chr9_132281914_-	SINE	Alu	AluSx1
CAediting_720870	chr9_132281936_-	SINE	Alu	AluSx1
CAediting_720871	chr9_132281996_-	SINE	Alu	AluSx1
CAediting_720872	chr9_132282345_-	SINE	Alu	AluJb
CAediting_720873	chr9_132282369_-	SINE	Alu	AluJb
CAediting_720874	chr9_132282370_-	SINE	Alu	AluJb
CAediting_720875	chr9_132282404_-	SINE	Alu	AluJb
CAediting_720876	chr9_132282410_-	SINE	Alu	AluJb
CAediting_720877	chr9_132282421_-	SINE	Alu	AluJb
CAediting_720878	chr9_132282450_-	SINE	Alu	AluJb
CAediting_720879	chr9_132282454_-	SINE	Alu	AluJb
CAediting_720880	chr9_132282514_-	SINE	Alu	AluJb
CAediting_720881	chr9_132282563_-	SINE	Alu	AluJb
CAediting_720882	chr9_132282569_-	SINE	Alu	AluJb
CAediting_720883	chr9_132285017_-	SINE	Alu	AluY
CAediting_720884	chr9_132286147_-	SINE	Alu	AluSc
CAediting_720885	chr9_132289943_-	SINE	Alu	AluSz
CAediting_720886	chr9_132289964_-	SINE	Alu	AluSz
CAediting_720887	chr9_132289965_-	SINE	Alu	AluSz
CAediting_720888	chr9_132290006_-	SINE	Alu	AluSz
CAediting_720889	chr9_132290026_-	SINE	Alu	AluSz
CAediting_720890	chr9_132290039_-	SINE	Alu	AluSz
CAediting_720891	chr9_132290043_-	SINE	Alu	AluSz
CAediting_720892	chr9_132290046_-	SINE	Alu	AluSz
CAediting_720893	chr9_132290052_-	SINE	Alu	AluSz
CAediting_720894	chr9_132290060_-	SINE	Alu	AluSz
CAediting_720895	chr9_132290074_-	SINE	Alu	AluSz
CAediting_720896	chr9_132290085_-	SINE	Alu	AluSz
CAediting_720897	chr9_132290087_-	SINE	Alu	AluSz
CAediting_720898	chr9_132290115_-	SINE	Alu	AluSz
CAediting_720899	chr9_132290147_-	SINE	Alu	AluSz
CAediting_720900	chr9_132290188_-	SINE	Alu	AluSz
CAediting_720901	chr9_132290539_-	SINE	Alu	AluSg
CAediting_720902	chr9_132290644_-	SINE	Alu	AluJb
CAediting_720903	chr9_132290665_-	SINE	Alu	AluJb
CAediting_720904	chr9_132290774_-	SINE	Alu	AluJb
CAediting_720905	chr9_132290801_-	SINE	Alu	AluJb
CAediting_720906	chr9_132291219_-	SINE	Alu	AluY
CAediting_720907	chr9_132291241_-	SINE	Alu	AluY
CAediting_720908	chr9_132291243_-	SINE	Alu	AluY
CAediting_720909	chr9_132291263_-	SINE	Alu	AluY
CAediting_720910	chr9_132291272_-	SINE	Alu	AluY
CAediting_720911	chr9_132291275_-	SINE	Alu	AluY
CAediting_720912	chr9_132291278_-	SINE	Alu	AluY
CAediting_720913	chr9_132291282_-	SINE	Alu	AluY
CAediting_720914	chr9_132291288_-	SINE	Alu	AluY
CAediting_720915	chr9_132291295_-	SINE	Alu	AluY
CAediting_720916	chr9_132291305_-	SINE	Alu	AluY
CAediting_720917	chr9_132291331_-	SINE	Alu	AluY
CAediting_720918	chr9_132291334_-	SINE	Alu	AluY
CAediting_720919	chr9_132291335_-	SINE	Alu	AluY
CAediting_720920	chr9_132291336_-	SINE	Alu	AluY
CAediting_720921	chr9_132291337_-	SINE	Alu	AluY
CAediting_720922	chr9_132291338_-	SINE	Alu	AluY
CAediting_720923	chr9_132291341_-	SINE	Alu	AluY
CAediting_720924	chr9_132291344_-	SINE	Alu	AluY
CAediting_720925	chr9_132291345_-	SINE	Alu	AluY
CAediting_720926	chr9_132291347_-	SINE	Alu	AluY
CAediting_720927	chr9_132291356_-	SINE	Alu	AluY
CAediting_720928	chr9_132291361_-	SINE	Alu	AluY
CAediting_720929	chr9_132291362_-	SINE	Alu	AluY
CAediting_720930	chr9_132291363_-	SINE	Alu	AluY
CAediting_720931	chr9_132291367_-	SINE	Alu	AluY
CAediting_720932	chr9_132291369_-	SINE	Alu	AluY
CAediting_720933	chr9_132291371_-	SINE	Alu	AluY
CAediting_720934	chr9_132291412_-	SINE	Alu	AluY
CAediting_720935	chr9_132291416_-	SINE	Alu	AluY
CAediting_720936	chr9_132291433_-	SINE	Alu	AluY
CAediting_720937	chr9_132291438_-	SINE	Alu	AluY
CAediting_720938	chr9_132291447_-	SINE	Alu	AluY
CAediting_720939	chr9_132291456_-	SINE	Alu	AluY
CAediting_720940	chr9_132292184_-	SINE	Alu	AluJr
CAediting_720941	chr9_132292257_-	SINE	Alu	AluJr
CAediting_720942	chr9_132292261_-	SINE	Alu	AluJr
CAediting_720943	chr9_132292263_-	SINE	Alu	AluJr
CAediting_720944	chr9_132292317_-	SINE	Alu	AluJr
CAediting_720945	chr9_132292393_-	SINE	Alu	AluJr
CAediting_720946	chr9_132292702_-	SINE	Alu	AluY
CAediting_720947	chr9_132292706_-	SINE	Alu	AluY
CAediting_720948	chr9_132292726_-	SINE	Alu	AluY
CAediting_720949	chr9_132292727_-	SINE	Alu	AluY
CAediting_720950	chr9_132292758_-	SINE	Alu	AluY
CAediting_720951	chr9_132292762_-	SINE	Alu	AluY
CAediting_720952	chr9_132292768_-	SINE	Alu	AluY
CAediting_720953	chr9_132292802_-	SINE	Alu	AluY
CAediting_720954	chr9_132292806_-	SINE	Alu	AluY
CAediting_720955	chr9_132292808_-	SINE	Alu	AluY
CAediting_720956	chr9_132292809_-	SINE	Alu	AluY
CAediting_720957	chr9_132292840_-	SINE	Alu	AluY
CAediting_720958	chr9_132292855_-	SINE	Alu	AluY
CAediting_720959	chr9_132292856_-	SINE	Alu	AluY
CAediting_720960	chr9_132292909_-	SINE	Alu	AluY
CAediting_720961	chr9_132292910_-	SINE	Alu	AluY
CAediting_720962	chr9_132293449_-	SINE	Alu	AluSq2
CAediting_720963	chr9_132293474_-	SINE	Alu	AluSq2
CAediting_720964	chr9_132293559_-	SINE	Alu	AluSq2
CAediting_720965	chr9_132293586_-	SINE	Alu	AluSq2
CAediting_720966	chr9_132293623_-	SINE	Alu	AluSq2
CAediting_720967	chr9_132293624_-	SINE	Alu	AluSq2
CAediting_720968	chr9_132293633_-	SINE	Alu	AluSq2
CAediting_720969	chr9_132293693_-	SINE	Alu	AluSq2
CAediting_720970	chr9_132293695_-	SINE	Alu	AluSq2
CAediting_720971	chr9_132293948_-	SINE	Alu	AluY
CAediting_720972	chr9_132294020_-	SINE	Alu	AluY
CAediting_720973	chr9_132301268_-	SINE	Alu	AluY
CAediting_720974	chr9_132303146_-	SINE	Alu	AluJr
CAediting_720975	chr9_132303182_-	SINE	Alu	AluJr
CAediting_720976	chr9_132303282_-	SINE	Alu	AluJr
CAediting_720977	chr9_132306852_-	SINE	Alu	AluJo
CAediting_720978	chr9_132313953_-	SINE	Alu	AluSq2
CAediting_720979	chr9_132313959_-	SINE	Alu	AluSq2
CAediting_720980	chr9_132313998_-	SINE	Alu	AluSq2
CAediting_720981	chr9_132314004_-	SINE	Alu	AluSq2
CAediting_720982	chr9_132314024_-	SINE	Alu	AluSq2
CAediting_720983	chr9_132314028_-	SINE	Alu	AluSq2
CAediting_720984	chr9_132314127_-	SINE	Alu	AluSp
CAediting_720985	chr9_132314230_-	SINE	Alu	AluSp
CAediting_720986	chr9_132314503_-	SINE	Alu	AluSq2
CAediting_720987	chr9_132315024_-	SINE	Alu	AluSz
CAediting_720988	chr9_132315050_-	SINE	Alu	AluSz
CAediting_720989	chr9_132315051_-	SINE	Alu	AluSz
CAediting_720990	chr9_132315061_-	SINE	Alu	AluSz
CAediting_720991	chr9_132315077_-	SINE	Alu	AluSz
CAediting_720992	chr9_132315082_-	SINE	Alu	AluSz
CAediting_720993	chr9_132315086_-	SINE	Alu	AluSz
CAediting_720994	chr9_132315089_-	SINE	Alu	AluSz
CAediting_720995	chr9_132315090_-	SINE	Alu	AluSz
CAediting_720996	chr9_132315091_-	SINE	Alu	AluSz
CAediting_720997	chr9_132315095_-	SINE	Alu	AluSz
CAediting_720998	chr9_132315106_-	SINE	Alu	AluSz
CAediting_720999	chr9_132315107_-	SINE	Alu	AluSz
CAediting_721000	chr9_132315108_-	SINE	Alu	AluSz
CAediting_721001	chr9_132315118_-	SINE	Alu	AluSz
CAediting_721002	chr9_132315132_-	SINE	Alu	AluSz
CAediting_721003	chr9_132315141_-	SINE	Alu	AluSz
CAediting_721004	chr9_132315189_-	SINE	Alu	AluSz
CAediting_721005	chr9_132315198_-	SINE	Alu	AluSz
CAediting_721006	chr9_132315206_-	SINE	Alu	AluSz
CAediting_721007	chr9_132315208_-	SINE	Alu	AluSz
CAediting_721008	chr9_132315212_-	SINE	Alu	AluSz
CAediting_721009	chr9_132317758_-	SINE	Alu	FLAM_C
CAediting_721010	chr9_132320319_-	SINE	Alu	AluY
CAediting_721011	chr9_132320386_-	SINE	Alu	AluY
CAediting_721012	chr9_132320472_-	SINE	Alu	AluY
CAediting_721013	chr9_132323890_-	SINE	Alu	AluJb
CAediting_721014	chr9_132325234_-	SINE	Alu	AluY
CAediting_721015	chr9_132325244_-	SINE	Alu	AluY
CAediting_721016	chr9_132325256_-	SINE	Alu	AluY
CAediting_721017	chr9_132325274_-	SINE	Alu	AluY
CAediting_721018	chr9_132325294_-	SINE	Alu	AluY
CAediting_721019	chr9_132325330_-	SINE	Alu	AluY
CAediting_721020	chr9_132325351_-	SINE	Alu	AluY
CAediting_721021	chr9_132325682_-	SINE	Alu	AluSq2
CAediting_721022	chr9_132325710_-	SINE	Alu	AluSq2
CAediting_721023	chr9_132325832_-	SINE	Alu	AluSq2
CAediting_721024	chr9_132325856_-	SINE	Alu	AluSq2
CAediting_721025	chr9_132335616_-	SINE	Alu	AluJo
CAediting_721026	chr9_132337053_-	SINE	Alu	AluSx
CAediting_721027	chr9_132338168_-	SINE	Alu	AluSg
CAediting_721028	chr9_132338177_-	SINE	Alu	AluSg
CAediting_721029	chr9_132338184_-	SINE	Alu	AluSg
CAediting_721030	chr9_132338216_-	SINE	Alu	AluSg
CAediting_721031	chr9_132338256_-	SINE	Alu	AluSg
CAediting_721032	chr9_132338297_-	SINE	Alu	AluSg
CAediting_721033	chr9_132338320_-	SINE	Alu	AluSg
CAediting_721034	chr9_132338364_-	SINE	Alu	AluSg
CAediting_721035	chr9_132338966_-	SINE	Alu	AluJr
CAediting_721036	chr9_132338982_-	SINE	Alu	AluJr
CAediting_721037	chr9_132338986_-	SINE	Alu	AluJr
CAediting_721038	chr9_132338989_-	SINE	Alu	AluJr
CAediting_721039	chr9_132338994_-	SINE	Alu	AluJr
CAediting_721040	chr9_132339227_-	SINE	Alu	AluJb
CAediting_721041	chr9_132339317_-	SINE	Alu	AluJb
CAediting_721042	chr9_132339371_-	SINE	Alu	AluJb
CAediting_721043	chr9_132339377_-	SINE	Alu	AluJb
CAediting_721044	chr9_132339390_-	SINE	Alu	AluJb
CAediting_721045	chr9_132339447_-	SINE	Alu	AluJb
CAediting_721046	chr9_132339709_-	SINE	Alu	AluSq2
CAediting_721047	chr9_132341091_-	SINE	Alu	AluSz
CAediting_721048	chr9_132341102_-	SINE	Alu	AluSz
CAediting_721049	chr9_132341103_-	SINE	Alu	AluSz
CAediting_721050	chr9_132341128_-	SINE	Alu	AluSz
CAediting_721051	chr9_132341136_-	SINE	Alu	AluSz
CAediting_721052	chr9_132341175_-	SINE	Alu	AluSz
CAediting_721053	chr9_132344252_-	SINE	Alu	AluJb
CAediting_721054	chr9_132344279_-	SINE	Alu	AluJb
CAediting_721055	chr9_132344286_-	SINE	Alu	AluJb
CAediting_721056	chr9_132344311_-	SINE	Alu	AluJb
CAediting_721057	chr9_132344329_-	SINE	Alu	AluJb
CAediting_721058	chr9_132344352_-	SINE	Alu	AluJb
CAediting_721059	chr9_132344378_-	SINE	Alu	AluJb
CAediting_721060	chr9_132344678_-	SINE	Alu	AluSx1
CAediting_721061	chr9_132345772_-	SINE	Alu	AluJb
CAediting_721062	chr9_132345933_-	SINE	Alu	AluJb
CAediting_721063	chr9_132346722_-	SINE	Alu	AluJr4

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RNA A-to-I editing events in the alternative splicing sites for SETX

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000107290.12.SETX.

Correlation between RNA A-to-I editing and PSI for ENSG00000107290.12.SETX.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SETX

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SETX

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SETX

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1351755	chr19_40282625_-	ENSG00000107290.12	ENST00000436441	hsa-miR-641	132262664	132262669	6mer	132262663	132262688	155	-20.69
CAediting_1351755	chr19_40282625_-	ENSG00000107290.12	ENST00000436441	hsa-miR-641	132262296	132262302	7mer-m8	132262295	132262318	140	-15.65
CAediting_1368054	chr19_46709310_-	ENSG00000107290.12	ENST00000436441	hsa-miR-320e	132264179	132264185	7mer-m8	132264178	132264195	140	-13.12
CAediting_77128	chr1_85133844_+	ENSG00000107290.12	ENST00000436441	hsa-miR-4423-3p	132262394	132262400	7mer-m8	132262393	132262416	149	-17.38
CAediting_1351755	chr19_40282625_-	ENSG00000107290.12	ENST00000224140	hsa-miR-641	132262664	132262669	6mer	132262663	132262688	155	-20.69
CAediting_1351755	chr19_40282625_-	ENSG00000107290.12	ENST00000224140	hsa-miR-641	132262296	132262302	7mer-m8	132262295	132262318	140	-15.65
CAediting_1368054	chr19_46709310_-	ENSG00000107290.12	ENST00000224140	hsa-miR-320e	132264179	132264185	7mer-m8	132264178	132264195	140	-13.12
CAediting_77128	chr1_85133844_+	ENSG00000107290.12	ENST00000224140	hsa-miR-4423-3p	132262394	132262400	7mer-m8	132262393	132262416	149	-17.38

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000107290.12	ENST00000436441	hsa-miR-200b-3p	132264074	132264080	7mer-m8	132264073	132264093	141	-10.08
CAediting_393	chr1_1167164_+	ENSG00000107290.12	ENST00000224140	hsa-miR-200b-3p	132264074	132264080	7mer-m8	132264073	132264093	141	-10.08

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SETX

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SETX

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for SETX

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SETX

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SETX

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SETX

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SETX	C1853761	SPINOCEREBELLAR ATAXIA, AUTOSOMAL RECESSIVE 1	8	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
SETX	C1865409	Amyotrophic Lateral Sclerosis 4, Juvenile	8	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
SETX	C0004138	Ataxias, Hereditary	1	GENOMICS_ENGLAND
SETX	C0007959	Charcot-Marie-Tooth Disease	1	GENOMICS_ENGLAND

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene