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Editing gene: SMG1 (CAeditome ID:23049)

Gene summary for SMG1

Gene summary

Gene information	Gene symbol	SMG1
	Gene ID	23049
	Gene name	SMG1 nonsense mediated mRNA decay associated PI3K related kinase
	Synonyms	61E3.4\|ATX\|LIP
	Cytomap	16p12.3
	Type of gene	protein-coding
	Description	serine/threonine-protein kinase SMG1PI-3-kinase-related kinase SMG-1SMG1 phosphatidylinositol 3-kinase-related kinaselambda-interacting proteinlambda/iota protein kinase C-interacting proteinsmg-1 homolog, phosphatidylinositol 3-kinase-related kinase
	Modification date	20210518
	UniProtAcc	Q96Q15
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
SMG1	GO:0004674	Serine/threonine-protein kinase SMG1	11544179
SMG1	GO:0004674	Serine/threonine-protein kinase SMG1	15175154
SMG1	GO:0004674	Serine/threonine-protein kinase SMG1	19417104
SMG1	GO:0042162	Serine/threonine-protein kinase SMG1	17916692
SMG1	GO:0000184	Serine/threonine-protein kinase SMG1	11544179
SMG1	GO:0018105	Serine/threonine-protein kinase SMG1	11544179
SMG1	GO:0018105	Serine/threonine-protein kinase SMG1	15175154
SMG1	GO:0046777	Serine/threonine-protein kinase SMG1	11331269
SMG1	GO:0046777	Serine/threonine-protein kinase SMG1	11544179
SMG1	GO:0046854	Serine/threonine-protein kinase SMG1	11331269
SMG1	GO:2001020	Serine/threonine-protein kinase SMG1	15175154
SMG1	GO:0005634	Serine/threonine-protein kinase SMG1	14636577
SMG1	GO:0005634	Serine/threonine-protein kinase SMG1	15175154
SMG1	GO:0005654	Serine/threonine-protein kinase SMG1	0000052
SMG1	GO:0005737	Serine/threonine-protein kinase SMG1	14636577
SMG1	GO:0005737	Serine/threonine-protein kinase SMG1	15175154

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RNA A-to-I events for SMG1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000157106.15

RNA A-to-I editing events in Cancer.

CAediting_1095483(18812440, -), CAediting_1095484(18813931, -), CAediting_1095485(18814713, -), CAediting_1095486(18814857, -), CAediting_1095487(18814969, -), CAediting_1095488(18814970, -), CAediting_1095489(18814997, -), CAediting_1095490(18815006, -), CAediting_1095491(18815013, -), CAediting_1095492(18818017, -), CAediting_1095493(18818018, -), CAediting_1095494(18818489, -), CAediting_1095495(18818490, -), CAediting_1095496(18819089, -), CAediting_1095497(18819979, -), CAediting_1095498(18820026, -), CAediting_1095499(18820062, -), CAediting_1095500(18820063, -), CAediting_1095501(18820114, -), CAediting_1095502(18820119, -), CAediting_1095503(18820126, -), CAediting_1095504(18820130, -), CAediting_1095505(18820134, -), CAediting_1095506(18820139, -), CAediting_1095507(18820161, -), CAediting_1095508(18820162, -), CAediting_1095509(18820169, -), CAediting_1095510(18820184, -), CAediting_1095511(18820185, -), CAediting_1095512(18820193, -), CAediting_1095513(18820228, -), CAediting_1095514(18820236, -), CAediting_1095515(18820295, -), CAediting_1095516(18820323, -), CAediting_1095517(18820347, -), CAediting_1095518(18820351, -), CAediting_1095519(18820377, -), CAediting_1095520(18820379, -), CAediting_1095521(18820380, -), CAediting_1095522(18820384, -), CAediting_1095523(18820400, -), CAediting_1095524(18820403, -), CAediting_1095525(18820407, -), CAediting_1095526(18820431, -), CAediting_1095527(18820479, -), CAediting_1095528(18820495, -), CAediting_1095529(18820499, -), CAediting_1095530(18827210, -), CAediting_1095531(18827224, -), CAediting_1095532(18827235, -), CAediting_1095533(18827247, -), CAediting_1095534(18827261, -), CAediting_1095535(18827263, -), CAediting_1095536(18827288, -), CAediting_1095537(18827298, -), CAediting_1095538(18827302, -), CAediting_1095539(18827326, -), CAediting_1095540(18827339, -), CAediting_1095541(18827343, -), CAediting_1095542(18827344, -), CAediting_1095543(18827382, -), CAediting_1095544(18827420, -), CAediting_1095545(18845925, -), CAediting_1095546(18848347, -), CAediting_1095547(18848351, -), CAediting_1095548(18848418, -), CAediting_1095549(18848437, -), CAediting_1095550(18848440, -), CAediting_1095551(18848454, -), CAediting_1095552(18848460, -), CAediting_1095553(18848462, -), CAediting_1095554(18848467, -), CAediting_1095555(18848522, -), CAediting_1095556(18848601, -), CAediting_1095557(18848810, -), CAediting_1095558(18848822, -), CAediting_1095559(18848830, -), CAediting_1095560(18848859, -), CAediting_1095561(18848949, -), CAediting_1095562(18848994, -), CAediting_1095563(18849018, -), CAediting_1095564(18853738, -), CAediting_1095565(18856235, -), CAediting_1095566(18867277, -), CAediting_1095567(18867289, -), CAediting_1095568(18867290, -), CAediting_1095569(18867351, -), CAediting_1095570(18867354, -), CAediting_1095571(18867362, -), CAediting_1095572(18867368, -), CAediting_1095573(18867371, -), CAediting_1095574(18867385, -), CAediting_1095575(18867406, -), CAediting_1095576(18867467, -), CAediting_1095577(18867873, -), CAediting_1095578(18867913, -), CAediting_1095579(18867975, -), CAediting_1095580(18872881, -), CAediting_1095581(18872897, -), CAediting_1095582(18872910, -), CAediting_1095583(18872936, -), CAediting_1095584(18872937, -), CAediting_1095585(18872949, -), CAediting_1095586(18872950, -), CAediting_1095587(18872951, -), CAediting_1095588(18872988, -), CAediting_1095589(18872991, -), CAediting_1095590(18873078, -), CAediting_1095591(18873110, -), CAediting_1095592(18873340, -), CAediting_1095593(18873388, -), CAediting_1095594(18873400, -), CAediting_1095595(18873404, -), CAediting_1095596(18873441, -), CAediting_1095597(18873459, -), CAediting_1095598(18873677, -), CAediting_1095599(18874201, -), CAediting_1095600(18874206, -), CAediting_1095601(18874211, -), CAediting_1095602(18874227, -), CAediting_1095603(18874231, -), CAediting_1095604(18874236, -), CAediting_1095605(18874254, -), CAediting_1095606(18874255, -), CAediting_1095607(18874267, -), CAediting_1095608(18874332, -), CAediting_1095609(18874342, -), CAediting_1095610(18874376, -), CAediting_1095611(18874390, -), CAediting_1095612(18874395, -), CAediting_1095613(18874411, -), CAediting_1095614(18874412, -), CAediting_1095615(18874418, -), CAediting_1095616(18874430, -), CAediting_1095617(18874766, -), CAediting_1095618(18874820, -), CAediting_1095619(18875006, -), CAediting_1095620(18875428, -), CAediting_1095621(18875649, -), CAediting_1095622(18878147, -), CAediting_1095623(18878152, -), CAediting_1095624(18878214, -), CAediting_1095625(18878349, -), CAediting_1095626(18878437, -), CAediting_1095627(18878442, -), CAediting_1095628(18878557, -), CAediting_1095629(18878760, -), CAediting_1095630(18878763, -), CAediting_1095631(18878842, -), CAediting_1095632(18878886, -), CAediting_1095633(18878891, -), CAediting_1095634(18878894, -), CAediting_1095635(18878898, -), CAediting_1095636(18878902, -), CAediting_1095637(18879188, -), CAediting_1095638(18879192, -), CAediting_1095639(18879208, -), CAediting_1095640(18879214, -), CAediting_1095641(18879227, -), CAediting_1095642(18879244, -), CAediting_1095643(18879248, -), CAediting_1095644(18879254, -), CAediting_1095645(18879260, -), CAediting_1095646(18879280, -), CAediting_1095647(18879283, -), CAediting_1095648(18879284, -), CAediting_1095649(18879314, -), CAediting_1095650(18879319, -), CAediting_1095651(18879338, -), CAediting_1095652(18879358, -), CAediting_1095653(18879359, -), CAediting_1095654(18879364, -), CAediting_1095655(18879387, -), CAediting_1095656(18879388, -), CAediting_1095657(18879406, -), CAediting_1095658(18879422, -), CAediting_1095659(18879423, -), CAediting_1095660(18885883, -), CAediting_1095661(18885894, -), CAediting_1095662(18885944, -), CAediting_1095663(18886636, -), CAediting_1095664(18886719, -), CAediting_1095665(18886740, -), CAediting_1095666(18886793, -), CAediting_1095667(18886800, -), CAediting_1095668(18887397, -), CAediting_1095669(18887412, -), CAediting_1095670(18887416, -), CAediting_1095671(18887418, -), CAediting_1095672(18887451, -), CAediting_1095673(18887455, -), CAediting_1095674(18887467, -), CAediting_1095675(18887477, -), CAediting_1095676(18887557, -), CAediting_1095677(18887909, -), CAediting_1095678(18887921, -), CAediting_1095679(18887948, -), CAediting_1095680(18888053, -), CAediting_1095681(18888592, -), CAediting_1095682(18888671, -), CAediting_1095683(18888684, -), CAediting_1095684(18888685, -), CAediting_1095685(18888694, -), CAediting_1095686(18888738, -), CAediting_1095687(18888739, -), CAediting_1095688(18888885, -), CAediting_1095689(18888920, -), CAediting_1095690(18888950, -), CAediting_1095691(18888951, -), CAediting_1095692(18888961, -), CAediting_1095693(18888987, -), CAediting_1095694(18889025, -), CAediting_1095695(18889029, -), CAediting_1095696(18889091, -), CAediting_1095697(18889096, -), CAediting_1095698(18889097, -), CAediting_1095699(18890506, -), CAediting_1095700(18891547, -), CAediting_1095701(18895403, -), CAediting_1095702(18895457, -), CAediting_1095703(18902675, -), CAediting_1095704(18904000, -), CAediting_1095705(18904066, -), CAediting_1095706(18904070, -), CAediting_1095707(18904076, -), CAediting_1095708(18904140, -), CAediting_1095709(18904807, -), CAediting_1095710(18904823, -), CAediting_1095711(18904888, -), CAediting_1095712(18904889, -), CAediting_1095713(18905057, -), CAediting_1095714(18905139, -), CAediting_1095715(18905247, -), CAediting_1095716(18905749, -), CAediting_1095717(18905794, -), CAediting_1095718(18905884, -), CAediting_1095719(18905885, -), CAediting_1095720(18906339, -), CAediting_1095721(18907432, -), CAediting_1095722(18911392, -), CAediting_1095723(18913979, -), CAediting_1095724(18914420, -), CAediting_1095725(18915069, -), CAediting_1095726(18915083, -), CAediting_1095727(18915201, -), CAediting_1095728(18915202, -), CAediting_1095729(18917413, -), CAediting_1095730(18917643, -), CAediting_1095731(18917644, -), CAediting_1095732(18917649, -), CAediting_1095733(18917716, -), CAediting_1095734(18918177, -), CAediting_1095735(18918263, -), CAediting_1095736(18919435, -), CAediting_1095737(18922835, -), CAediting_1095738(18922969, -), CAediting_1095739(18922972, -),

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RNA editing positional annotations for SMG1 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1095483	chr16_18812440_-	ncRNA_intronic
CAediting_1095484	chr16_18813931_-	ncRNA_intronic
CAediting_1095485	chr16_18814713_-	ncRNA_intronic
CAediting_1095486	chr16_18814857_-	ncRNA_intronic
CAediting_1095487	chr16_18814969_-	ncRNA_intronic
CAediting_1095488	chr16_18814970_-	ncRNA_intronic
CAediting_1095489	chr16_18814997_-	ncRNA_intronic
CAediting_1095490	chr16_18815006_-	ncRNA_intronic
CAediting_1095491	chr16_18815013_-	ncRNA_intronic
CAediting_1095492	chr16_18818017_-	intronic
CAediting_1095493	chr16_18818018_-	intronic
CAediting_1095494	chr16_18818489_-	intronic
CAediting_1095495	chr16_18818490_-	intronic
CAediting_1095496	chr16_18819089_-	intronic
CAediting_1095497	chr16_18819979_-	intronic
CAediting_1095498	chr16_18820026_-	intronic
CAediting_1095499	chr16_18820062_-	intronic
CAediting_1095500	chr16_18820063_-	intronic
CAediting_1095501	chr16_18820114_-	intronic
CAediting_1095502	chr16_18820119_-	intronic
CAediting_1095503	chr16_18820126_-	intronic
CAediting_1095504	chr16_18820130_-	intronic
CAediting_1095505	chr16_18820134_-	intronic
CAediting_1095506	chr16_18820139_-	intronic
CAediting_1095507	chr16_18820161_-	intronic
CAediting_1095508	chr16_18820162_-	intronic
CAediting_1095509	chr16_18820169_-	intronic
CAediting_1095510	chr16_18820184_-	intronic
CAediting_1095511	chr16_18820185_-	intronic
CAediting_1095512	chr16_18820193_-	intronic
CAediting_1095513	chr16_18820228_-	intronic
CAediting_1095514	chr16_18820236_-	intronic
CAediting_1095515	chr16_18820295_-	intronic
CAediting_1095516	chr16_18820323_-	intronic
CAediting_1095517	chr16_18820347_-	intronic
CAediting_1095518	chr16_18820351_-	intronic
CAediting_1095519	chr16_18820377_-	intronic
CAediting_1095520	chr16_18820379_-	intronic
CAediting_1095521	chr16_18820380_-	intronic
CAediting_1095522	chr16_18820384_-	intronic
CAediting_1095523	chr16_18820400_-	intronic
CAediting_1095524	chr16_18820403_-	intronic
CAediting_1095525	chr16_18820407_-	intronic
CAediting_1095526	chr16_18820431_-	intronic
CAediting_1095527	chr16_18820479_-	intronic
CAediting_1095528	chr16_18820495_-	intronic
CAediting_1095529	chr16_18820499_-	intronic
CAediting_1095530	chr16_18827210_-	intronic
CAediting_1095531	chr16_18827224_-	intronic
CAediting_1095532	chr16_18827235_-	intronic
CAediting_1095533	chr16_18827247_-	intronic
CAediting_1095534	chr16_18827261_-	intronic
CAediting_1095535	chr16_18827263_-	intronic
CAediting_1095536	chr16_18827288_-	intronic
CAediting_1095537	chr16_18827298_-	intronic
CAediting_1095538	chr16_18827302_-	intronic
CAediting_1095539	chr16_18827326_-	intronic
CAediting_1095540	chr16_18827339_-	intronic
CAediting_1095541	chr16_18827343_-	intronic
CAediting_1095542	chr16_18827344_-	intronic
CAediting_1095543	chr16_18827382_-	intronic
CAediting_1095544	chr16_18827420_-	intronic
CAediting_1095545	chr16_18845925_-	ncRNA_intronic
CAediting_1095546	chr16_18848347_-	ncRNA_intronic
CAediting_1095547	chr16_18848351_-	ncRNA_intronic
CAediting_1095548	chr16_18848418_-	ncRNA_intronic
CAediting_1095549	chr16_18848437_-	ncRNA_intronic
CAediting_1095550	chr16_18848440_-	ncRNA_intronic
CAediting_1095551	chr16_18848454_-	ncRNA_intronic
CAediting_1095552	chr16_18848460_-	ncRNA_intronic
CAediting_1095553	chr16_18848462_-	ncRNA_intronic
CAediting_1095554	chr16_18848467_-	ncRNA_intronic
CAediting_1095555	chr16_18848522_-	ncRNA_intronic
CAediting_1095556	chr16_18848601_-	ncRNA_intronic
CAediting_1095557	chr16_18848810_-	ncRNA_intronic
CAediting_1095558	chr16_18848822_-	ncRNA_intronic
CAediting_1095559	chr16_18848830_-	ncRNA_intronic
CAediting_1095560	chr16_18848859_-	ncRNA_intronic
CAediting_1095561	chr16_18848949_-	ncRNA_intronic
CAediting_1095562	chr16_18848994_-	ncRNA_intronic
CAediting_1095563	chr16_18849018_-	ncRNA_intronic
CAediting_1095564	chr16_18853738_-	exonic
CAediting_1095565	chr16_18856235_-	intronic
CAediting_1095566	chr16_18867277_-	intronic
CAediting_1095567	chr16_18867289_-	intronic
CAediting_1095568	chr16_18867290_-	intronic
CAediting_1095569	chr16_18867351_-	intronic
CAediting_1095570	chr16_18867354_-	intronic
CAediting_1095571	chr16_18867362_-	intronic
CAediting_1095572	chr16_18867368_-	intronic
CAediting_1095573	chr16_18867371_-	intronic
CAediting_1095574	chr16_18867385_-	intronic
CAediting_1095575	chr16_18867406_-	intronic
CAediting_1095576	chr16_18867467_-	intronic
CAediting_1095577	chr16_18867873_-	intronic
CAediting_1095578	chr16_18867913_-	intronic
CAediting_1095579	chr16_18867975_-	intronic
CAediting_1095580	chr16_18872881_-	intronic
CAediting_1095581	chr16_18872897_-	intronic
CAediting_1095582	chr16_18872910_-	intronic
CAediting_1095583	chr16_18872936_-	intronic
CAediting_1095584	chr16_18872937_-	intronic
CAediting_1095585	chr16_18872949_-	intronic
CAediting_1095586	chr16_18872950_-	intronic
CAediting_1095587	chr16_18872951_-	intronic
CAediting_1095588	chr16_18872988_-	intronic
CAediting_1095589	chr16_18872991_-	intronic
CAediting_1095590	chr16_18873078_-	intronic
CAediting_1095591	chr16_18873110_-	intronic
CAediting_1095592	chr16_18873340_-	intronic
CAediting_1095593	chr16_18873388_-	intronic
CAediting_1095594	chr16_18873400_-	intronic
CAediting_1095595	chr16_18873404_-	intronic
CAediting_1095596	chr16_18873441_-	intronic
CAediting_1095597	chr16_18873459_-	intronic
CAediting_1095598	chr16_18873677_-	intronic
CAediting_1095599	chr16_18874201_-	intronic
CAediting_1095600	chr16_18874206_-	intronic
CAediting_1095601	chr16_18874211_-	intronic
CAediting_1095602	chr16_18874227_-	intronic
CAediting_1095603	chr16_18874231_-	intronic
CAediting_1095604	chr16_18874236_-	intronic
CAediting_1095605	chr16_18874254_-	intronic
CAediting_1095606	chr16_18874255_-	intronic
CAediting_1095607	chr16_18874267_-	intronic
CAediting_1095608	chr16_18874332_-	intronic
CAediting_1095609	chr16_18874342_-	intronic
CAediting_1095610	chr16_18874376_-	intronic
CAediting_1095611	chr16_18874390_-	intronic
CAediting_1095612	chr16_18874395_-	intronic
CAediting_1095613	chr16_18874411_-	intronic
CAediting_1095614	chr16_18874412_-	intronic
CAediting_1095615	chr16_18874418_-	intronic
CAediting_1095616	chr16_18874430_-	intronic
CAediting_1095617	chr16_18874766_-	intronic
CAediting_1095618	chr16_18874820_-	intronic
CAediting_1095619	chr16_18875006_-	intronic
CAediting_1095620	chr16_18875428_-	UTR3
CAediting_1095621	chr16_18875649_-	UTR3
CAediting_1095622	chr16_18878147_-	ncRNA_exonic
CAediting_1095623	chr16_18878152_-	ncRNA_exonic
CAediting_1095624	chr16_18878214_-	ncRNA_exonic
CAediting_1095625	chr16_18878349_-	ncRNA_exonic
CAediting_1095626	chr16_18878437_-	ncRNA_exonic
CAediting_1095627	chr16_18878442_-	ncRNA_exonic
CAediting_1095628	chr16_18878557_-	ncRNA_exonic
CAediting_1095629	chr16_18878760_-	ncRNA_exonic
CAediting_1095630	chr16_18878763_-	ncRNA_exonic
CAediting_1095631	chr16_18878842_-	ncRNA_exonic
CAediting_1095632	chr16_18878886_-	ncRNA_exonic
CAediting_1095633	chr16_18878891_-	ncRNA_exonic
CAediting_1095634	chr16_18878894_-	ncRNA_exonic
CAediting_1095635	chr16_18878898_-	ncRNA_exonic
CAediting_1095636	chr16_18878902_-	ncRNA_exonic
CAediting_1095637	chr16_18879188_-	ncRNA_exonic
CAediting_1095638	chr16_18879192_-	ncRNA_exonic
CAediting_1095639	chr16_18879208_-	ncRNA_exonic
CAediting_1095640	chr16_18879214_-	ncRNA_exonic
CAediting_1095641	chr16_18879227_-	ncRNA_exonic
CAediting_1095642	chr16_18879244_-	ncRNA_exonic
CAediting_1095643	chr16_18879248_-	ncRNA_exonic
CAediting_1095644	chr16_18879254_-	ncRNA_exonic
CAediting_1095645	chr16_18879260_-	ncRNA_exonic
CAediting_1095646	chr16_18879280_-	ncRNA_exonic
CAediting_1095647	chr16_18879283_-	ncRNA_exonic
CAediting_1095648	chr16_18879284_-	ncRNA_exonic
CAediting_1095649	chr16_18879314_-	ncRNA_exonic
CAediting_1095650	chr16_18879319_-	ncRNA_exonic
CAediting_1095651	chr16_18879338_-	ncRNA_exonic
CAediting_1095652	chr16_18879358_-	ncRNA_exonic
CAediting_1095653	chr16_18879359_-	ncRNA_exonic
CAediting_1095654	chr16_18879364_-	ncRNA_exonic
CAediting_1095655	chr16_18879387_-	ncRNA_exonic
CAediting_1095656	chr16_18879388_-	ncRNA_exonic
CAediting_1095657	chr16_18879406_-	ncRNA_exonic
CAediting_1095658	chr16_18879422_-	ncRNA_exonic
CAediting_1095659	chr16_18879423_-	ncRNA_exonic
CAediting_1095660	chr16_18885883_-	intronic
CAediting_1095661	chr16_18885894_-	intronic
CAediting_1095662	chr16_18885944_-	intronic
CAediting_1095663	chr16_18886636_-	intronic
CAediting_1095664	chr16_18886719_-	intronic
CAediting_1095665	chr16_18886740_-	intronic
CAediting_1095666	chr16_18886793_-	intronic
CAediting_1095667	chr16_18886800_-	intronic
CAediting_1095668	chr16_18887397_-	intronic
CAediting_1095669	chr16_18887412_-	intronic
CAediting_1095670	chr16_18887416_-	intronic
CAediting_1095671	chr16_18887418_-	intronic
CAediting_1095672	chr16_18887451_-	intronic
CAediting_1095673	chr16_18887455_-	intronic
CAediting_1095674	chr16_18887467_-	intronic
CAediting_1095675	chr16_18887477_-	intronic
CAediting_1095676	chr16_18887557_-	intronic
CAediting_1095677	chr16_18887909_-	intronic
CAediting_1095678	chr16_18887921_-	intronic
CAediting_1095679	chr16_18887948_-	intronic
CAediting_1095680	chr16_18888053_-	intronic
CAediting_1095681	chr16_18888592_-	intronic
CAediting_1095682	chr16_18888671_-	intronic
CAediting_1095683	chr16_18888684_-	intronic
CAediting_1095684	chr16_18888685_-	intronic
CAediting_1095685	chr16_18888694_-	intronic
CAediting_1095686	chr16_18888738_-	intronic
CAediting_1095687	chr16_18888739_-	intronic
CAediting_1095688	chr16_18888885_-	intronic
CAediting_1095689	chr16_18888920_-	intronic
CAediting_1095690	chr16_18888950_-	intronic
CAediting_1095691	chr16_18888951_-	intronic
CAediting_1095692	chr16_18888961_-	intronic
CAediting_1095693	chr16_18888987_-	intronic
CAediting_1095694	chr16_18889025_-	intronic
CAediting_1095695	chr16_18889029_-	intronic
CAediting_1095696	chr16_18889091_-	intronic
CAediting_1095697	chr16_18889096_-	intronic
CAediting_1095698	chr16_18889097_-	intronic
CAediting_1095699	chr16_18890506_-	intronic
CAediting_1095700	chr16_18891547_-	intronic
CAediting_1095701	chr16_18895403_-	intronic
CAediting_1095702	chr16_18895457_-	intronic
CAediting_1095703	chr16_18902675_-	intronic
CAediting_1095704	chr16_18904000_-	intronic
CAediting_1095705	chr16_18904066_-	intronic
CAediting_1095706	chr16_18904070_-	intronic
CAediting_1095707	chr16_18904076_-	intronic
CAediting_1095708	chr16_18904140_-	intronic
CAediting_1095709	chr16_18904807_-	intronic
CAediting_1095710	chr16_18904823_-	intronic
CAediting_1095711	chr16_18904888_-	intronic
CAediting_1095712	chr16_18904889_-	intronic
CAediting_1095713	chr16_18905057_-	intronic
CAediting_1095714	chr16_18905139_-	intronic
CAediting_1095715	chr16_18905247_-	intronic
CAediting_1095716	chr16_18905749_-	intronic
CAediting_1095717	chr16_18905794_-	intronic
CAediting_1095718	chr16_18905884_-	intronic
CAediting_1095719	chr16_18905885_-	intronic
CAediting_1095720	chr16_18906339_-	intronic
CAediting_1095721	chr16_18907432_-	intronic
CAediting_1095722	chr16_18911392_-	UTR5
CAediting_1095723	chr16_18913979_-	intronic
CAediting_1095724	chr16_18914420_-	intronic
CAediting_1095725	chr16_18915069_-	intronic
CAediting_1095726	chr16_18915083_-	intronic
CAediting_1095727	chr16_18915201_-	intronic
CAediting_1095728	chr16_18915202_-	intronic
CAediting_1095729	chr16_18917413_-	intronic
CAediting_1095730	chr16_18917643_-	intronic
CAediting_1095731	chr16_18917644_-	intronic
CAediting_1095732	chr16_18917649_-	intronic
CAediting_1095733	chr16_18917716_-	intronic
CAediting_1095734	chr16_18918177_-	intronic
CAediting_1095735	chr16_18918263_-	intronic
CAediting_1095736	chr16_18919435_-	intronic
CAediting_1095737	chr16_18922835_-	intronic
CAediting_1095738	chr16_18922969_-	intronic
CAediting_1095739	chr16_18922972_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1095483	chr16_18812440_-	SINE	Alu	AluSx
CAediting_1095484	chr16_18813931_-	SINE	Alu	AluSx
CAediting_1095485	chr16_18814713_-	SINE	Alu	AluSx1
CAediting_1095486	chr16_18814857_-	SINE	Alu	AluSx1
CAediting_1095487	chr16_18814969_-	SINE	Alu	AluJr
CAediting_1095488	chr16_18814970_-	SINE	Alu	AluJr
CAediting_1095489	chr16_18814997_-	SINE	Alu	AluJr
CAediting_1095490	chr16_18815006_-	SINE	Alu	AluJr
CAediting_1095491	chr16_18815013_-	SINE	Alu	AluJr
CAediting_1095492	chr16_18818017_-	SINE	Alu	AluJr
CAediting_1095493	chr16_18818018_-	SINE	Alu	AluJr
CAediting_1095494	chr16_18818489_-	SINE	Alu	AluJr
CAediting_1095495	chr16_18818490_-	SINE	Alu	AluJr
CAediting_1095496	chr16_18819089_-	SINE	Alu	AluSx3
CAediting_1095497	chr16_18819979_-	SINE	Alu	AluSg4
CAediting_1095498	chr16_18820026_-	SINE	Alu	AluSg4
CAediting_1095499	chr16_18820062_-	SINE	Alu	AluSg4
CAediting_1095500	chr16_18820063_-	SINE	Alu	AluSg4
CAediting_1095501	chr16_18820114_-	SINE	Alu	AluSg4
CAediting_1095502	chr16_18820119_-	SINE	Alu	AluSg4
CAediting_1095503	chr16_18820126_-	SINE	Alu	AluSg4
CAediting_1095504	chr16_18820130_-	SINE	Alu	AluSg4
CAediting_1095505	chr16_18820134_-	SINE	Alu	AluSg4
CAediting_1095506	chr16_18820139_-	SINE	Alu	AluSg4
CAediting_1095507	chr16_18820161_-	SINE	Alu	AluSg4
CAediting_1095508	chr16_18820162_-	SINE	Alu	AluSg4
CAediting_1095509	chr16_18820169_-	SINE	Alu	AluSg4
CAediting_1095510	chr16_18820184_-	SINE	Alu	AluSg4
CAediting_1095511	chr16_18820185_-	SINE	Alu	AluSg4
CAediting_1095512	chr16_18820193_-	SINE	Alu	AluSg4
CAediting_1095513	chr16_18820228_-	SINE	Alu	AluSg4
CAediting_1095514	chr16_18820236_-	SINE	Alu	AluSg4
CAediting_1095515	chr16_18820295_-	SINE	Alu	AluJr
CAediting_1095516	chr16_18820323_-	SINE	Alu	AluJr
CAediting_1095517	chr16_18820347_-	SINE	Alu	AluJr
CAediting_1095518	chr16_18820351_-	SINE	Alu	AluJr
CAediting_1095519	chr16_18820377_-	SINE	Alu	AluJr
CAediting_1095520	chr16_18820379_-	SINE	Alu	AluJr
CAediting_1095521	chr16_18820380_-	SINE	Alu	AluJr
CAediting_1095522	chr16_18820384_-	SINE	Alu	AluJr
CAediting_1095523	chr16_18820400_-	SINE	Alu	AluJr
CAediting_1095524	chr16_18820403_-	SINE	Alu	AluJr
CAediting_1095525	chr16_18820407_-	SINE	Alu	AluJr
CAediting_1095526	chr16_18820431_-	SINE	Alu	AluJr
CAediting_1095527	chr16_18820479_-	SINE	Alu	AluJr
CAediting_1095528	chr16_18820495_-	SINE	Alu	AluJr
CAediting_1095529	chr16_18820499_-	SINE	Alu	AluJr
CAediting_1095530	chr16_18827210_-	SINE	Alu	AluSx
CAediting_1095531	chr16_18827224_-	SINE	Alu	AluSx
CAediting_1095532	chr16_18827235_-	SINE	Alu	AluSx
CAediting_1095533	chr16_18827247_-	SINE	Alu	AluSx
CAediting_1095534	chr16_18827261_-	SINE	Alu	AluSx
CAediting_1095535	chr16_18827263_-	SINE	Alu	AluSx
CAediting_1095536	chr16_18827288_-	SINE	Alu	AluSx
CAediting_1095537	chr16_18827298_-	SINE	Alu	AluSx
CAediting_1095538	chr16_18827302_-	SINE	Alu	AluSx
CAediting_1095539	chr16_18827326_-	SINE	Alu	AluSx
CAediting_1095540	chr16_18827339_-	SINE	Alu	AluSx
CAediting_1095541	chr16_18827343_-	SINE	Alu	AluSx
CAediting_1095542	chr16_18827344_-	SINE	Alu	AluSx
CAediting_1095543	chr16_18827382_-	SINE	Alu	AluSx
CAediting_1095544	chr16_18827420_-	SINE	Alu	AluSx
CAediting_1095545	chr16_18845925_-	SINE	Alu	AluSc
CAediting_1095546	chr16_18848347_-	SINE	Alu	AluSz6
CAediting_1095547	chr16_18848351_-	SINE	Alu	AluSz6
CAediting_1095548	chr16_18848418_-	SINE	Alu	AluSz6
CAediting_1095549	chr16_18848437_-	SINE	Alu	AluSz6
CAediting_1095550	chr16_18848440_-	SINE	Alu	AluSz6
CAediting_1095551	chr16_18848454_-	SINE	Alu	AluSz6
CAediting_1095552	chr16_18848460_-	SINE	Alu	AluSz6
CAediting_1095553	chr16_18848462_-	SINE	Alu	AluSz6
CAediting_1095554	chr16_18848467_-	SINE	Alu	AluSz6
CAediting_1095555	chr16_18848522_-	SINE	Alu	AluSz6
CAediting_1095556	chr16_18848601_-	SINE	Alu	AluSz6
CAediting_1095557	chr16_18848810_-	SINE	Alu	AluSg7
CAediting_1095558	chr16_18848822_-	SINE	Alu	AluSg7
CAediting_1095559	chr16_18848830_-	SINE	Alu	AluSg7
CAediting_1095560	chr16_18848859_-	SINE	Alu	AluSg7
CAediting_1095561	chr16_18848949_-	SINE	Alu	AluSg7
CAediting_1095562	chr16_18848994_-	SINE	Alu	AluSg7
CAediting_1095563	chr16_18849018_-	SINE	Alu	AluSg7
CAediting_1095565	chr16_18856235_-	SINE	Alu	AluJr
CAediting_1095566	chr16_18867277_-	SINE	Alu	AluSx1
CAediting_1095567	chr16_18867289_-	SINE	Alu	AluSx1
CAediting_1095568	chr16_18867290_-	SINE	Alu	AluSx1
CAediting_1095569	chr16_18867351_-	SINE	Alu	AluSx1
CAediting_1095570	chr16_18867354_-	SINE	Alu	AluSx1
CAediting_1095571	chr16_18867362_-	SINE	Alu	AluSx1
CAediting_1095572	chr16_18867368_-	SINE	Alu	AluSx1
CAediting_1095573	chr16_18867371_-	SINE	Alu	AluSx1
CAediting_1095574	chr16_18867385_-	SINE	Alu	AluSx1
CAediting_1095575	chr16_18867406_-	SINE	Alu	AluSx1
CAediting_1095576	chr16_18867467_-	SINE	Alu	AluSx1
CAediting_1095577	chr16_18867873_-	SINE	Alu	AluYh3
CAediting_1095578	chr16_18867913_-	SINE	Alu	AluYh3
CAediting_1095579	chr16_18867975_-	SINE	Alu	AluYh3
CAediting_1095580	chr16_18872881_-	SINE	Alu	AluSz6
CAediting_1095581	chr16_18872897_-	SINE	Alu	AluSz6
CAediting_1095582	chr16_18872910_-	SINE	Alu	AluSz6
CAediting_1095583	chr16_18872936_-	SINE	Alu	AluSz6
CAediting_1095584	chr16_18872937_-	SINE	Alu	AluSz6
CAediting_1095585	chr16_18872949_-	SINE	Alu	AluSz6
CAediting_1095586	chr16_18872950_-	SINE	Alu	AluSz6
CAediting_1095587	chr16_18872951_-	SINE	Alu	AluSz6
CAediting_1095588	chr16_18872988_-	SINE	Alu	AluSz6
CAediting_1095589	chr16_18872991_-	SINE	Alu	AluSz6
CAediting_1095590	chr16_18873078_-	SINE	Alu	AluSz6
CAediting_1095591	chr16_18873110_-	SINE	Alu	AluSz6
CAediting_1095592	chr16_18873340_-	SINE	Alu	AluSx1
CAediting_1095593	chr16_18873388_-	SINE	Alu	AluSx1
CAediting_1095594	chr16_18873400_-	SINE	Alu	AluSx1
CAediting_1095595	chr16_18873404_-	SINE	Alu	AluSx1
CAediting_1095596	chr16_18873441_-	SINE	Alu	AluSx1
CAediting_1095597	chr16_18873459_-	SINE	Alu	AluSx1
CAediting_1095599	chr16_18874201_-	SINE	Alu	AluSz
CAediting_1095600	chr16_18874206_-	SINE	Alu	AluSz
CAediting_1095601	chr16_18874211_-	SINE	Alu	AluSz
CAediting_1095602	chr16_18874227_-	SINE	Alu	AluSz
CAediting_1095603	chr16_18874231_-	SINE	Alu	AluSz
CAediting_1095604	chr16_18874236_-	SINE	Alu	AluSz
CAediting_1095605	chr16_18874254_-	SINE	Alu	AluSz
CAediting_1095606	chr16_18874255_-	SINE	Alu	AluSz
CAediting_1095607	chr16_18874267_-	SINE	Alu	AluSz
CAediting_1095608	chr16_18874332_-	SINE	Alu	AluSz
CAediting_1095609	chr16_18874342_-	SINE	Alu	AluSz
CAediting_1095610	chr16_18874376_-	SINE	Alu	AluSz
CAediting_1095611	chr16_18874390_-	SINE	Alu	AluSz
CAediting_1095612	chr16_18874395_-	SINE	Alu	AluSz
CAediting_1095613	chr16_18874411_-	SINE	Alu	AluSz
CAediting_1095614	chr16_18874412_-	SINE	Alu	AluSz
CAediting_1095615	chr16_18874418_-	SINE	Alu	AluSz
CAediting_1095616	chr16_18874430_-	SINE	Alu	AluSz
CAediting_1095617	chr16_18874766_-	SINE	Alu	AluSx1
CAediting_1095618	chr16_18874820_-	SINE	Alu	AluSx1
CAediting_1095619	chr16_18875006_-	DNA	TcMar-Tigger	Tigger4b
CAediting_1095620	chr16_18875428_-	SINE	Alu	AluSq2
CAediting_1095621	chr16_18875649_-	DNA	TcMar-Tigger	Tigger4a
CAediting_1095622	chr16_18878147_-	SINE	Alu	AluY
CAediting_1095623	chr16_18878152_-	SINE	Alu	AluY
CAediting_1095624	chr16_18878214_-	SINE	Alu	AluY
CAediting_1095625	chr16_18878349_-	SINE	Alu	AluJr
CAediting_1095626	chr16_18878437_-	SINE	Alu	AluJr
CAediting_1095627	chr16_18878442_-	SINE	Alu	AluJr
CAediting_1095628	chr16_18878557_-	SINE	Alu	AluJr
CAediting_1095629	chr16_18878760_-	SINE	Alu	AluJb
CAediting_1095630	chr16_18878763_-	SINE	Alu	AluJb
CAediting_1095631	chr16_18878842_-	SINE	Alu	AluJb
CAediting_1095632	chr16_18878886_-	SINE	Alu	AluJb
CAediting_1095633	chr16_18878891_-	SINE	Alu	AluJb
CAediting_1095634	chr16_18878894_-	SINE	Alu	AluJb
CAediting_1095635	chr16_18878898_-	SINE	Alu	AluJb
CAediting_1095636	chr16_18878902_-	SINE	Alu	AluJb
CAediting_1095637	chr16_18879188_-	SINE	Alu	AluJo
CAediting_1095638	chr16_18879192_-	SINE	Alu	AluJo
CAediting_1095639	chr16_18879208_-	SINE	Alu	AluJo
CAediting_1095640	chr16_18879214_-	SINE	Alu	AluJo
CAediting_1095641	chr16_18879227_-	SINE	Alu	AluJo
CAediting_1095642	chr16_18879244_-	SINE	Alu	AluJo
CAediting_1095643	chr16_18879248_-	SINE	Alu	AluJo
CAediting_1095644	chr16_18879254_-	SINE	Alu	AluJo
CAediting_1095645	chr16_18879260_-	SINE	Alu	AluJo
CAediting_1095646	chr16_18879280_-	SINE	Alu	AluJo
CAediting_1095647	chr16_18879283_-	SINE	Alu	AluJo
CAediting_1095648	chr16_18879284_-	SINE	Alu	AluJo
CAediting_1095649	chr16_18879314_-	SINE	Alu	AluJo
CAediting_1095650	chr16_18879319_-	SINE	Alu	AluJo
CAediting_1095651	chr16_18879338_-	SINE	Alu	AluJo
CAediting_1095652	chr16_18879358_-	SINE	Alu	AluJo
CAediting_1095653	chr16_18879359_-	SINE	Alu	AluJo
CAediting_1095654	chr16_18879364_-	SINE	Alu	AluJo
CAediting_1095655	chr16_18879387_-	SINE	Alu	AluJo
CAediting_1095656	chr16_18879388_-	SINE	Alu	AluJo
CAediting_1095657	chr16_18879406_-	SINE	Alu	AluJo
CAediting_1095660	chr16_18885883_-	SINE	Alu	AluSz6
CAediting_1095661	chr16_18885894_-	SINE	Alu	AluSz6
CAediting_1095662	chr16_18885944_-	SINE	Alu	AluSz6
CAediting_1095663	chr16_18886636_-	SINE	Alu	AluSz
CAediting_1095664	chr16_18886719_-	SINE	Alu	AluSz
CAediting_1095665	chr16_18886740_-	SINE	Alu	AluSz
CAediting_1095666	chr16_18886793_-	SINE	Alu	AluSz
CAediting_1095667	chr16_18886800_-	SINE	Alu	AluSz
CAediting_1095668	chr16_18887397_-	SINE	Alu	AluJb
CAediting_1095669	chr16_18887412_-	SINE	Alu	AluJb
CAediting_1095670	chr16_18887416_-	SINE	Alu	AluJb
CAediting_1095671	chr16_18887418_-	SINE	Alu	AluJb
CAediting_1095672	chr16_18887451_-	SINE	Alu	AluJb
CAediting_1095673	chr16_18887455_-	SINE	Alu	AluJb
CAediting_1095674	chr16_18887467_-	SINE	Alu	AluJb
CAediting_1095675	chr16_18887477_-	SINE	Alu	AluJb
CAediting_1095676	chr16_18887557_-	SINE	Alu	AluJb
CAediting_1095677	chr16_18887909_-	SINE	Alu	AluSz
CAediting_1095678	chr16_18887921_-	SINE	Alu	AluSz
CAediting_1095679	chr16_18887948_-	SINE	Alu	AluSz
CAediting_1095680	chr16_18888053_-	SINE	Alu	AluSz
CAediting_1095681	chr16_18888592_-	SINE	Alu	AluSc
CAediting_1095682	chr16_18888671_-	SINE	Alu	AluSc
CAediting_1095683	chr16_18888684_-	SINE	Alu	AluSc
CAediting_1095684	chr16_18888685_-	SINE	Alu	AluSc
CAediting_1095685	chr16_18888694_-	SINE	Alu	AluSc
CAediting_1095686	chr16_18888738_-	SINE	Alu	AluSc
CAediting_1095687	chr16_18888739_-	SINE	Alu	AluSc
CAediting_1095688	chr16_18888885_-	SINE	Alu	AluY
CAediting_1095689	chr16_18888920_-	SINE	Alu	AluY
CAediting_1095690	chr16_18888950_-	SINE	Alu	AluY
CAediting_1095691	chr16_18888951_-	SINE	Alu	AluY
CAediting_1095692	chr16_18888961_-	SINE	Alu	AluY
CAediting_1095693	chr16_18888987_-	SINE	Alu	AluY
CAediting_1095694	chr16_18889025_-	SINE	Alu	AluY
CAediting_1095695	chr16_18889029_-	SINE	Alu	AluY
CAediting_1095696	chr16_18889091_-	SINE	Alu	AluY
CAediting_1095697	chr16_18889096_-	SINE	Alu	AluY
CAediting_1095698	chr16_18889097_-	SINE	Alu	AluY
CAediting_1095699	chr16_18890506_-	SINE	Alu	AluSx
CAediting_1095700	chr16_18891547_-	SINE	Alu	AluSq2
CAediting_1095701	chr16_18895403_-	SINE	Alu	AluSz
CAediting_1095702	chr16_18895457_-	SINE	Alu	AluSz
CAediting_1095703	chr16_18902675_-	SINE	Alu	AluJb
CAediting_1095704	chr16_18904000_-	SINE	Alu	AluYm1
CAediting_1095705	chr16_18904066_-	SINE	Alu	AluYm1
CAediting_1095706	chr16_18904070_-	SINE	Alu	AluYm1
CAediting_1095707	chr16_18904076_-	SINE	Alu	AluYm1
CAediting_1095708	chr16_18904140_-	SINE	Alu	AluYm1
CAediting_1095709	chr16_18904807_-	SINE	Alu	AluSg4
CAediting_1095710	chr16_18904823_-	SINE	Alu	AluSg4
CAediting_1095711	chr16_18904888_-	SINE	Alu	AluSg4
CAediting_1095712	chr16_18904889_-	SINE	Alu	AluSg4
CAediting_1095713	chr16_18905057_-	SINE	Alu	AluSx3
CAediting_1095714	chr16_18905139_-	SINE	Alu	AluSx3
CAediting_1095715	chr16_18905247_-	SINE	Alu	AluSx3
CAediting_1095716	chr16_18905749_-	SINE	Alu	AluSx1
CAediting_1095717	chr16_18905794_-	SINE	Alu	AluSx1
CAediting_1095718	chr16_18905884_-	SINE	Alu	AluSx1
CAediting_1095719	chr16_18905885_-	SINE	Alu	AluSx1
CAediting_1095720	chr16_18906339_-	SINE	Alu	AluSq
CAediting_1095721	chr16_18907432_-	SINE	Alu	FRAM
CAediting_1095722	chr16_18911392_-	SINE	Alu	AluSx3
CAediting_1095723	chr16_18913979_-	SINE	Alu	AluSc8
CAediting_1095724	chr16_18914420_-	SINE	Alu	AluSx1
CAediting_1095725	chr16_18915069_-	SINE	Alu	AluSc
CAediting_1095726	chr16_18915083_-	SINE	Alu	AluSc
CAediting_1095727	chr16_18915201_-	SINE	Alu	AluSc
CAediting_1095728	chr16_18915202_-	SINE	Alu	AluSc
CAediting_1095729	chr16_18917413_-	SINE	Alu	AluSp
CAediting_1095730	chr16_18917643_-	SINE	Alu	AluSp
CAediting_1095731	chr16_18917644_-	SINE	Alu	AluSp
CAediting_1095732	chr16_18917649_-	SINE	Alu	AluSp
CAediting_1095733	chr16_18917716_-	SINE	Alu	AluSp
CAediting_1095734	chr16_18918177_-	SINE	Alu	AluSq2
CAediting_1095735	chr16_18918263_-	SINE	Alu	AluSq2
CAediting_1095736	chr16_18919435_-	SINE	Alu	AluY
CAediting_1095737	chr16_18922835_-	SINE	Alu	AluJb
CAediting_1095738	chr16_18922969_-	SINE	Alu	AluJb
CAediting_1095739	chr16_18922972_-	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for SMG1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
IR	CAediting_1095631	chr16_18878842_-	18878838:18878860	3SS	0+2i	TTTTTTGTATTATTTTGTAGAGA	9.1	TTTTTTGTATTATTTTGTGGAGA	1.15

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000157106.15.SMG1.

Correlation between RNA A-to-I editing and PSI for ENSG00000157106.15.SMG1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SMG1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SMG1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SMG1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1095620	chr16_18875428_-	ENSG00000157106.15	ENST00000561947	hsa-miR-190b-3p	18875427	18875432	6mer	18875426	18875445	149	-8.14

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000157106.15	ENST00000565324	hsa-miR-624-3p	18809201	18809207	7mer-m8	18809200	18809222	146	-20.17
CAediting_688081	chr9_63819627_+	ENSG00000157106.15	ENST00000561947	hsa-miR-4477b	18875264	18875270	7mer-m8	18875263	18875288	151	-16.84
CAediting_1229415	chr17_67471547_+	ENSG00000157106.15	ENST00000568038	hsa-miR-548aa	18868229	18868235	7mer-m8	18868228	18868253	152	-16.81
CAediting_573001	chr7_92204086_-	ENSG00000157106.15	ENST00000568038	hsa-miR-1285-5p	18868236	18868243	8mer-1a	18868236	18868257	159	-23.62
CAediting_1229414	chr17_67471546_+	ENSG00000157106.15	ENST00000561947	hsa-miR-548aa	18875712	18875719	8mer-1a	18875712	18875736	140	-9.68
CAediting_580943	chr7_100356700_+	ENSG00000157106.15	ENST00000561947	hsa-miR-6840-3p	18875513	18875519	7mer-m8	18875512	18875528	141	-27.37
CAediting_1229414	chr17_67471546_+	ENSG00000157106.15	ENST00000565224	hsa-miR-548aa	18875712	18875719	8mer-1a	18875712	18875736	140	-9.68
CAediting_117844	chr1_162342605_+	ENSG00000157106.15	ENST00000330588	hsa-miR-556-3p	18884814	18884820	7mer-m8	18884813	18884834	156	-13.47

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1351755	chr19_40282625_-	ENSG00000157106.15	ENST00000561947	hsa-miR-641	18875867	18875874	8mer-1a	18875867	18875890	149	-11.51
CAediting_1351755	chr19_40282625_-	ENSG00000157106.15	ENST00000565224	hsa-miR-641	18875867	18875874	8mer-1a	18875867	18875890	149	-11.51

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SMG1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SMG1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for SMG1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SMG1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SMG1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SMG1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene