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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ABCF1 (CAeditome ID:23)

Gene summary for ABCF1

check button Gene summary
Gene informationGene symbol

ABCF1

Gene ID

23

Gene nameATP binding cassette subfamily F member 1
SynonymsABC27|ABC50
Cytomap

6p21.33

Type of geneprotein-coding
DescriptionATP-binding cassette sub-family F member 1ATP-binding cassette 50 (TNF-alpha stimulated)ATP-binding cassette, sub-family F (GCN20), member 1TNF-alpha-stimulated ABC proteinTNFalpha-inducible ATP-binding protein
Modification date20210518
UniProtAcc

Q8NE71

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
ABCF1

GO:0005829

ATP-binding cassette sub-family F member 1

0000052


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RNA A-to-I events for ABCF1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000204574.11

check button RNA A-to-I editing events in Cancer.
CAediting_467425(30572629, +), CAediting_467426(30572630, +), CAediting_467427(30574420, +), CAediting_467428(30575792, +), CAediting_467429(30575953, +), CAediting_467430(30575993, +), CAediting_467431(30576013, +), CAediting_467432(30576023, +), CAediting_467433(30577597, +), CAediting_467434(30578791, +), CAediting_467435(30578857, +), CAediting_467436(30578920, +), CAediting_467437(30578921, +), CAediting_467438(30578988, +), CAediting_467439(30587003, +), CAediting_467440(30587006, +), CAediting_467441(30587064, +), CAediting_467442(30587073, +), CAediting_467443(30587131, +), CAediting_467444(30587383, +), CAediting_467445(30587407, +), CAediting_467446(30587487, +), CAediting_467447(30587491, +), CAediting_467448(30587514, +), CAediting_467449(30587687, +), CAediting_467450(30587688, +), CAediting_467451(30587690, +), CAediting_467452(30587693, +), CAediting_467453(30587728, +), CAediting_467454(30587781, +), CAediting_467455(30587996, +), CAediting_467456(30588003, +), CAediting_467457(30588064, +), CAediting_467458(30588086, +), CAediting_467459(30588092, +), CAediting_467460(30588393, +), CAediting_467461(30588423, +), CAediting_467462(30588466, +), CAediting_467463(30588491, +), CAediting_467464(30588523, +), CAediting_467465(30588543, +), CAediting_467466(30588566, +), CAediting_467467(30589029, +), CAediting_467468(30589030, +), CAediting_467469(30589103, +), CAediting_467470(30589128, +), CAediting_467471(30589160, +), CAediting_467472(30589164, +), CAediting_467473(30589165, +), CAediting_467474(30589168, +), CAediting_467475(30589173, +), CAediting_467476(30589182, +), CAediting_467477(30589188, +), CAediting_467478(30589196, +), CAediting_467479(30589208, +), CAediting_467480(30589392, +), CAediting_467481(30589416, +), CAediting_467482(30589456, +), CAediting_467483(30589509, +), CAediting_467484(30591577, +), CAediting_467485(30591625, +), CAediting_467486(30591630, +), CAediting_467487(30591637, +), CAediting_467488(30591650, +), CAediting_467489(30591651, +), CAediting_467490(30591654, +), CAediting_467491(30591655, +), CAediting_467492(30591668, +), CAediting_467493(30591680, +), CAediting_467494(30591692, +), CAediting_467495(30591696, +), CAediting_467496(30591712, +), CAediting_467497(30591732, +), CAediting_467498(30591734, +), CAediting_467499(30591751, +), CAediting_467500(30591760, +), CAediting_467501(30591798, +), CAediting_467502(30591812, +), CAediting_467503(30591813, +), CAediting_467504(30591872, +), CAediting_467505(30591874, +), CAediting_467506(30591876, +), CAediting_467507(30591934, +), CAediting_467508(30591946, +), CAediting_467509(30591951, +), CAediting_467510(30591963, +), CAediting_467511(30591973, +), CAediting_467512(30591975, +), CAediting_467513(30591979, +), CAediting_467514(30591995, +), CAediting_467515(30592024, +), CAediting_467516(30592030, +), CAediting_467517(30592050, +), CAediting_467518(30592051, +), CAediting_467519(30592076, +), CAediting_467520(30592089, +), CAediting_467521(30592104, +), CAediting_467522(30593031, +), CAediting_467523(30593041, +), CAediting_467524(30593049, +), CAediting_467525(30593050, +), CAediting_467526(30593074, +), CAediting_467527(30593082, +), CAediting_467528(30593087, +), CAediting_467529(30593096, +), CAediting_467530(30593107, +), CAediting_467531(30593110, +), CAediting_467532(30593111, +), CAediting_467533(30593115, +), CAediting_467534(30593121, +), CAediting_467535(30593135, +), CAediting_467536(30593136, +), CAediting_467537(30593137, +), CAediting_467538(30593138, +), CAediting_467539(30593139, +), CAediting_467540(30593141, +), CAediting_467541(30593146, +), CAediting_467542(30593148, +), CAediting_467543(30593149, +), CAediting_467544(30593152, +), CAediting_467545(30593157, +), CAediting_467546(30593172, +), CAediting_467547(30593178, +), CAediting_467548(30593184, +), CAediting_467549(30593188, +), CAediting_467550(30593192, +), CAediting_467551(30593201, +), CAediting_467552(30593205, +), CAediting_467553(30593219, +), CAediting_467554(30593220, +), CAediting_467555(30593231, +), CAediting_467556(30593240, +), CAediting_467557(30593244, +), CAediting_467558(30593259, +), CAediting_467559(30593278, +), CAediting_467560(30593281, +), CAediting_467561(30593668, +), CAediting_467562(30593669, +), CAediting_467563(30593672, +), CAediting_467564(30593677, +), CAediting_467565(30593682, +), CAediting_467566(30593688, +), CAediting_467567(30593726, +), CAediting_467568(30593763, +), CAediting_467569(30595309, +), CAediting_467570(30595368, +), CAediting_467571(30595967, +), CAediting_467572(30596041, +), CAediting_467573(30596045, +), CAediting_467574(30596058, +), CAediting_467575(30596354, +), CAediting_467576(30596598, +), CAediting_467577(30596605, +), CAediting_467578(30596611, +), CAediting_467579(30596621, +), CAediting_467580(30596647, +), CAediting_467581(30596791, +), CAediting_467582(30596840, +), CAediting_467583(30596850, +), CAediting_467584(30596868, +), CAediting_467585(30596895, +), CAediting_467586(30596900, +), CAediting_467587(30596909, +), CAediting_467588(30596917, +),

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RNA editing positional annotations for ABCF1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_467425chr6_30572629_+intronic
CAediting_467426chr6_30572630_+intronic
CAediting_467427chr6_30574420_+intronic
CAediting_467428chr6_30575792_+intronic
CAediting_467429chr6_30575953_+intronic
CAediting_467430chr6_30575993_+intronic
CAediting_467431chr6_30576013_+intronic
CAediting_467432chr6_30576023_+intronic
CAediting_467433chr6_30577597_+intronic
CAediting_467434chr6_30578791_+intronic
CAediting_467435chr6_30578857_+intronic
CAediting_467436chr6_30578920_+intronic
CAediting_467437chr6_30578921_+intronic
CAediting_467438chr6_30578988_+intronic
CAediting_467439chr6_30587003_+intronic
CAediting_467440chr6_30587006_+intronic
CAediting_467441chr6_30587064_+intronic
CAediting_467442chr6_30587073_+intronic
CAediting_467443chr6_30587131_+intronic
CAediting_467444chr6_30587383_+intronic
CAediting_467445chr6_30587407_+intronic
CAediting_467446chr6_30587487_+intronic
CAediting_467447chr6_30587491_+intronic
CAediting_467448chr6_30587514_+intronic
CAediting_467449chr6_30587687_+intronic
CAediting_467450chr6_30587688_+intronic
CAediting_467451chr6_30587690_+intronic
CAediting_467452chr6_30587693_+intronic
CAediting_467453chr6_30587728_+intronic
CAediting_467454chr6_30587781_+intronic
CAediting_467455chr6_30587996_+intronic
CAediting_467456chr6_30588003_+intronic
CAediting_467457chr6_30588064_+intronic
CAediting_467458chr6_30588086_+intronic
CAediting_467459chr6_30588092_+intronic
CAediting_467460chr6_30588393_+intronic
CAediting_467461chr6_30588423_+intronic
CAediting_467462chr6_30588466_+intronic
CAediting_467463chr6_30588491_+intronic
CAediting_467464chr6_30588523_+intronic
CAediting_467465chr6_30588543_+intronic
CAediting_467466chr6_30588566_+intronic
CAediting_467467chr6_30589029_+intronic
CAediting_467468chr6_30589030_+intronic
CAediting_467469chr6_30589103_+intronic
CAediting_467470chr6_30589128_+intronic
CAediting_467471chr6_30589160_+intronic
CAediting_467472chr6_30589164_+intronic
CAediting_467473chr6_30589165_+intronic
CAediting_467474chr6_30589168_+intronic
CAediting_467475chr6_30589173_+intronic
CAediting_467476chr6_30589182_+intronic
CAediting_467477chr6_30589188_+intronic
CAediting_467478chr6_30589196_+intronic
CAediting_467479chr6_30589208_+intronic
CAediting_467480chr6_30589392_+intronic
CAediting_467481chr6_30589416_+intronic
CAediting_467482chr6_30589456_+ncRNA_exonic
CAediting_467483chr6_30589509_+ncRNA_exonic
CAediting_467484chr6_30591577_+intronic
CAediting_467485chr6_30591625_+intronic
CAediting_467486chr6_30591630_+intronic
CAediting_467487chr6_30591637_+intronic
CAediting_467488chr6_30591650_+intronic
CAediting_467489chr6_30591651_+intronic
CAediting_467490chr6_30591654_+intronic
CAediting_467491chr6_30591655_+intronic
CAediting_467492chr6_30591668_+intronic
CAediting_467493chr6_30591680_+intronic
CAediting_467494chr6_30591692_+intronic
CAediting_467495chr6_30591696_+intronic
CAediting_467496chr6_30591712_+intronic
CAediting_467497chr6_30591732_+intronic
CAediting_467498chr6_30591734_+intronic
CAediting_467499chr6_30591751_+intronic
CAediting_467500chr6_30591760_+intronic
CAediting_467501chr6_30591798_+intronic
CAediting_467502chr6_30591812_+intronic
CAediting_467503chr6_30591813_+intronic
CAediting_467504chr6_30591872_+intronic
CAediting_467505chr6_30591874_+intronic
CAediting_467506chr6_30591876_+intronic
CAediting_467507chr6_30591934_+intronic
CAediting_467508chr6_30591946_+intronic
CAediting_467509chr6_30591951_+intronic
CAediting_467510chr6_30591963_+intronic
CAediting_467511chr6_30591973_+intronic
CAediting_467512chr6_30591975_+intronic
CAediting_467513chr6_30591979_+intronic
CAediting_467514chr6_30591995_+intronic
CAediting_467515chr6_30592024_+intronic
CAediting_467516chr6_30592030_+intronic
CAediting_467517chr6_30592050_+intronic
CAediting_467518chr6_30592051_+intronic
CAediting_467519chr6_30592076_+intronic
CAediting_467520chr6_30592089_+intronic
CAediting_467521chr6_30592104_+intronic
CAediting_467522chr6_30593031_+intronic
CAediting_467523chr6_30593041_+intronic
CAediting_467524chr6_30593049_+intronic
CAediting_467525chr6_30593050_+intronic
CAediting_467526chr6_30593074_+intronic
CAediting_467527chr6_30593082_+intronic
CAediting_467528chr6_30593087_+intronic
CAediting_467529chr6_30593096_+intronic
CAediting_467530chr6_30593107_+intronic
CAediting_467531chr6_30593110_+intronic
CAediting_467532chr6_30593111_+intronic
CAediting_467533chr6_30593115_+intronic
CAediting_467534chr6_30593121_+intronic
CAediting_467535chr6_30593135_+intronic
CAediting_467536chr6_30593136_+intronic
CAediting_467537chr6_30593137_+intronic
CAediting_467538chr6_30593138_+intronic
CAediting_467539chr6_30593139_+intronic
CAediting_467540chr6_30593141_+intronic
CAediting_467541chr6_30593146_+intronic
CAediting_467542chr6_30593148_+intronic
CAediting_467543chr6_30593149_+intronic
CAediting_467544chr6_30593152_+intronic
CAediting_467545chr6_30593157_+intronic
CAediting_467546chr6_30593172_+intronic
CAediting_467547chr6_30593178_+intronic
CAediting_467548chr6_30593184_+intronic
CAediting_467549chr6_30593188_+intronic
CAediting_467550chr6_30593192_+intronic
CAediting_467551chr6_30593201_+intronic
CAediting_467552chr6_30593205_+intronic
CAediting_467553chr6_30593219_+intronic
CAediting_467554chr6_30593220_+intronic
CAediting_467555chr6_30593231_+intronic
CAediting_467556chr6_30593240_+intronic
CAediting_467557chr6_30593244_+intronic
CAediting_467558chr6_30593259_+intronic
CAediting_467559chr6_30593278_+intronic
CAediting_467560chr6_30593281_+intronic
CAediting_467561chr6_30593668_+intronic
CAediting_467562chr6_30593669_+intronic
CAediting_467563chr6_30593672_+intronic
CAediting_467564chr6_30593677_+intronic
CAediting_467565chr6_30593682_+intronic
CAediting_467566chr6_30593688_+intronic
CAediting_467567chr6_30593726_+intronic
CAediting_467568chr6_30593763_+intronic
CAediting_467569chr6_30595309_+intronic
CAediting_467570chr6_30595368_+intronic
CAediting_467571chr6_30595967_+intronic
CAediting_467572chr6_30596041_+intronic
CAediting_467573chr6_30596045_+intronic
CAediting_467574chr6_30596058_+intronic
CAediting_467575chr6_30596354_+intronic
CAediting_467576chr6_30596598_+UTR3
CAediting_467577chr6_30596605_+UTR3
CAediting_467578chr6_30596611_+UTR3
CAediting_467579chr6_30596621_+UTR3
CAediting_467580chr6_30596647_+UTR3
CAediting_467581chr6_30596791_+UTR3
CAediting_467582chr6_30596840_+UTR3
CAediting_467583chr6_30596850_+UTR3
CAediting_467584chr6_30596868_+UTR3
CAediting_467585chr6_30596895_+UTR3
CAediting_467586chr6_30596900_+UTR3
CAediting_467587chr6_30596909_+UTR3
CAediting_467588chr6_30596917_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_467425chr6_30572629_+SINEAluAluJo
CAediting_467426chr6_30572630_+SINEAluAluJo
CAediting_467427chr6_30574420_+SINEAluAluJr
CAediting_467428chr6_30575792_+SINEAluAluJr4
CAediting_467429chr6_30575953_+SINEAluAluJr4
CAediting_467430chr6_30575993_+SINEAluAluJr4
CAediting_467431chr6_30576013_+SINEAluAluJr4
CAediting_467432chr6_30576023_+SINEAluAluJr4
CAediting_467433chr6_30577597_+SINEAluFLAM_C
CAediting_467434chr6_30578791_+SINEAluAluSg
CAediting_467435chr6_30578857_+SINEAluAluSg
CAediting_467436chr6_30578920_+SINEAluAluSg
CAediting_467437chr6_30578921_+SINEAluAluSg
CAediting_467438chr6_30578988_+SINEAluAluSg
CAediting_467439chr6_30587003_+SINEAluAluSx
CAediting_467440chr6_30587006_+SINEAluAluSx
CAediting_467441chr6_30587064_+SINEAluAluSx
CAediting_467442chr6_30587073_+SINEAluAluSx
CAediting_467443chr6_30587131_+SINEAluAluSx
CAediting_467444chr6_30587383_+SINEAluAluSp
CAediting_467445chr6_30587407_+SINEAluAluSp
CAediting_467446chr6_30587487_+SINEAluAluSp
CAediting_467447chr6_30587491_+SINEAluAluSp
CAediting_467448chr6_30587514_+SINEAluAluSp
CAediting_467449chr6_30587687_+SINEAluAluSz
CAediting_467450chr6_30587688_+SINEAluAluSz
CAediting_467451chr6_30587690_+SINEAluAluSz
CAediting_467452chr6_30587693_+SINEAluAluSz
CAediting_467453chr6_30587728_+SINEAluAluSz
CAediting_467454chr6_30587781_+SINEAluAluSz
CAediting_467455chr6_30587996_+SINEAluAluSg
CAediting_467456chr6_30588003_+SINEAluAluSg
CAediting_467457chr6_30588064_+SINEAluAluSg
CAediting_467458chr6_30588086_+SINEAluAluSg
CAediting_467459chr6_30588092_+SINEAluAluSg
CAediting_467460chr6_30588393_+SINEAluAluSc8
CAediting_467461chr6_30588423_+SINEAluAluSc8
CAediting_467462chr6_30588466_+SINEAluAluSc8
CAediting_467463chr6_30588491_+SINEAluAluSc8
CAediting_467464chr6_30588523_+SINEAluAluSc8
CAediting_467465chr6_30588543_+SINEAluAluSc8
CAediting_467466chr6_30588566_+SINEAluAluSc8
CAediting_467467chr6_30589029_+SINEAluAluSz
CAediting_467468chr6_30589030_+SINEAluAluSz
CAediting_467469chr6_30589103_+SINEAluAluSz
CAediting_467470chr6_30589128_+SINEAluAluSz
CAediting_467471chr6_30589160_+SINEAluAluSz
CAediting_467472chr6_30589164_+SINEAluAluSz
CAediting_467473chr6_30589165_+SINEAluAluSz
CAediting_467474chr6_30589168_+SINEAluAluSz
CAediting_467475chr6_30589173_+SINEAluAluSz
CAediting_467476chr6_30589182_+SINEAluAluSz
CAediting_467477chr6_30589188_+SINEAluAluSz
CAediting_467478chr6_30589196_+SINEAluAluSz
CAediting_467479chr6_30589208_+SINEAluAluSz
CAediting_467480chr6_30589392_+SINEAluAluY
CAediting_467481chr6_30589416_+SINEAluAluY
CAediting_467482chr6_30589456_+SINEAluAluY
CAediting_467483chr6_30589509_+SINEAluAluY
CAediting_467484chr6_30591577_+SINEAluAluSz
CAediting_467485chr6_30591625_+SINEAluAluSz
CAediting_467486chr6_30591630_+SINEAluAluSz
CAediting_467487chr6_30591637_+SINEAluAluSz
CAediting_467488chr6_30591650_+SINEAluAluSz
CAediting_467489chr6_30591651_+SINEAluAluSz
CAediting_467490chr6_30591654_+SINEAluAluSz
CAediting_467491chr6_30591655_+SINEAluAluSz
CAediting_467492chr6_30591668_+SINEAluAluSz
CAediting_467493chr6_30591680_+SINEAluAluSz
CAediting_467494chr6_30591692_+SINEAluAluSz
CAediting_467495chr6_30591696_+SINEAluAluSz
CAediting_467496chr6_30591712_+SINEAluAluSz
CAediting_467497chr6_30591732_+SINEAluAluSz
CAediting_467498chr6_30591734_+SINEAluAluSz
CAediting_467499chr6_30591751_+SINEAluAluSz
CAediting_467500chr6_30591760_+SINEAluAluSz
CAediting_467501chr6_30591798_+SINEAluAluSz
CAediting_467502chr6_30591812_+SINEAluAluSz
CAediting_467503chr6_30591813_+SINEAluAluSz
CAediting_467504chr6_30591872_+SINEAluAluJr
CAediting_467505chr6_30591874_+SINEAluAluJr
CAediting_467506chr6_30591876_+SINEAluAluJr
CAediting_467507chr6_30591934_+SINEAluAluJr
CAediting_467508chr6_30591946_+SINEAluAluJr
CAediting_467509chr6_30591951_+SINEAluAluJr
CAediting_467510chr6_30591963_+SINEAluAluJr
CAediting_467511chr6_30591973_+SINEAluAluJr
CAediting_467512chr6_30591975_+SINEAluAluJr
CAediting_467513chr6_30591979_+SINEAluAluJr
CAediting_467514chr6_30591995_+SINEAluAluJr
CAediting_467515chr6_30592024_+SINEAluAluJr
CAediting_467516chr6_30592030_+SINEAluAluJr
CAediting_467517chr6_30592050_+SINEAluAluJr
CAediting_467518chr6_30592051_+SINEAluAluJr
CAediting_467519chr6_30592076_+SINEAluAluJr
CAediting_467520chr6_30592089_+SINEAluAluJr
CAediting_467521chr6_30592104_+SINEAluAluJr
CAediting_467522chr6_30593031_+SINEAluAluSx3
CAediting_467523chr6_30593041_+SINEAluAluSx3
CAediting_467524chr6_30593049_+SINEAluAluSx3
CAediting_467525chr6_30593050_+SINEAluAluSx3
CAediting_467526chr6_30593074_+SINEAluAluSx3
CAediting_467527chr6_30593082_+SINEAluAluSx3
CAediting_467528chr6_30593087_+SINEAluAluSx3
CAediting_467529chr6_30593096_+SINEAluAluSx3
CAediting_467530chr6_30593107_+SINEAluAluSx3
CAediting_467531chr6_30593110_+SINEAluAluSx3
CAediting_467532chr6_30593111_+SINEAluAluSx3
CAediting_467533chr6_30593115_+SINEAluAluSx3
CAediting_467534chr6_30593121_+SINEAluAluSx3
CAediting_467535chr6_30593135_+SINEAluAluSx3
CAediting_467536chr6_30593136_+SINEAluAluSx3
CAediting_467537chr6_30593137_+SINEAluAluSx3
CAediting_467538chr6_30593138_+SINEAluAluSx3
CAediting_467539chr6_30593139_+SINEAluAluSx3
CAediting_467540chr6_30593141_+SINEAluAluSx3
CAediting_467541chr6_30593146_+SINEAluAluSx3
CAediting_467542chr6_30593148_+SINEAluAluSx3
CAediting_467543chr6_30593149_+SINEAluAluSx3
CAediting_467544chr6_30593152_+SINEAluAluSx3
CAediting_467545chr6_30593157_+SINEAluAluSx3
CAediting_467546chr6_30593172_+SINEAluAluSx3
CAediting_467547chr6_30593178_+SINEAluAluSx3
CAediting_467548chr6_30593184_+SINEAluAluSx3
CAediting_467549chr6_30593188_+SINEAluAluSx3
CAediting_467550chr6_30593192_+SINEAluAluSx3
CAediting_467551chr6_30593201_+SINEAluAluSx3
CAediting_467552chr6_30593205_+SINEAluAluSx3
CAediting_467553chr6_30593219_+SINEAluAluSx3
CAediting_467554chr6_30593220_+SINEAluAluSx3
CAediting_467555chr6_30593231_+SINEAluAluSx3
CAediting_467556chr6_30593240_+SINEAluAluSx3
CAediting_467557chr6_30593244_+SINEAluAluSx3
CAediting_467558chr6_30593259_+SINEAluAluSx3
CAediting_467559chr6_30593278_+SINEAluAluSx3
CAediting_467560chr6_30593281_+SINEAluAluSx3
CAediting_467561chr6_30593668_+SINEAluAluSx
CAediting_467562chr6_30593669_+SINEAluAluSx
CAediting_467563chr6_30593672_+SINEAluAluSx
CAediting_467564chr6_30593677_+SINEAluAluSx
CAediting_467565chr6_30593682_+SINEAluAluSx
CAediting_467566chr6_30593688_+SINEAluAluSx
CAediting_467567chr6_30593726_+SINEAluAluSx
CAediting_467568chr6_30593763_+SINEAluAluSx
CAediting_467569chr6_30595309_+SINEAluAluSp
CAediting_467570chr6_30595368_+SINEAluAluSp
CAediting_467571chr6_30595967_+SINEAluAluSq2
CAediting_467572chr6_30596041_+SINEAluAluSq2
CAediting_467573chr6_30596045_+SINEAluAluSq2
CAediting_467574chr6_30596058_+SINEAluAluSq2
CAediting_467575chr6_30596354_+SINEAluAluSq2
CAediting_467576chr6_30596598_+SINEAluAluSc
CAediting_467577chr6_30596605_+SINEAluAluSc
CAediting_467578chr6_30596611_+SINEAluAluSc
CAediting_467579chr6_30596621_+SINEAluAluSc
CAediting_467580chr6_30596647_+SINEAluAluSc
CAediting_467581chr6_30596791_+SINEAluAluY
CAediting_467582chr6_30596840_+SINEAluAluY
CAediting_467583chr6_30596850_+SINEAluAluY
CAediting_467584chr6_30596868_+SINEAluAluY
CAediting_467585chr6_30596895_+SINEAluAluY
CAediting_467586chr6_30596900_+SINEAluAluY
CAediting_467587chr6_30596909_+SINEAluAluY
CAediting_467588chr6_30596917_+SINEAluAluY

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RNA A-to-I editing events in the alternative splicing sites for ABCF1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000204574.11.ABCF1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000204574.11.ABCF1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ABCF1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ABCF1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for ABCF1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_467576chr6_30596598_+ENSG00000204574.11ENST00000475993hsa-miR-4793-3p30596596305966027mer-m83059658130596603158.00-23.99
CAediting_467576chr6_30596598_+ENSG00000204574.11ENST00000475993hsa-miR-508-5p30596592305965987mer-m83059657630596599160.00-22.74
CAediting_467576chr6_30596598_+ENSG00000204574.11ENST00000475993hsa-miR-770330596595305966017mer-m83059658030596602147.00-19.70
CAediting_467577chr6_30596605_+ENSG00000204574.11ENST00000475993hsa-miR-324-3p30596599305966057mer-m83059658130596606153.00-24.51
CAediting_467577chr6_30596605_+ENSG00000204574.11ENST00000475993hsa-miR-425230596600305966067mer-m83059658730596607147.00-18.43
CAediting_467580chr6_30596647_+ENSG00000204574.11ENST00000475993hsa-miR-3140-5p30596641305966477mer-m83059663030596648146.00-13.26
CAediting_467580chr6_30596647_+ENSG00000204574.11ENST00000475993hsa-miR-5187-3p30596640305966467mer-m83059662730596647145.00-13.94
CAediting_467580chr6_30596647_+ENSG00000204574.11ENST00000475993hsa-miR-607830596643305966508mer-1a3059663130596650148.00-20.42
CAediting_467582chr6_30596840_+ENSG00000204574.11ENST00000475993hsa-miR-181a-2-3p30596834305968407mer-m83059682230596841151.00-18.90
CAediting_467582chr6_30596840_+ENSG00000204574.11ENST00000475993hsa-miR-425230596835305968417mer-m83059682430596842150.00-19.23
CAediting_467582chr6_30596840_+ENSG00000204574.11ENST00000475993hsa-miR-4691-3p30596837305968437mer-m83059682330596844162.00-28.16
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-318330596894305969007mer-m83059688030596901140.00-13.44
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-4640-3p30596898305969047mer-m83059688430596905157.00-19.40
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-4723-3p30596894305969007mer-m83059688130596901142.00-17.74
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-6769b-3p30596894305969007mer-m83059688130596901142.00-17.49
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-6892-3p30596895305969017mer-m83059688230596902140.00-16.14
CAediting_467588chr6_30596917_+ENSG00000204574.11ENST00000475993hsa-miR-3190-5p30596915305969217mer-m83059690330596922155.00-18.34
CAediting_467588chr6_30596917_+ENSG00000204574.11ENST00000475993hsa-miR-548s30596914305969207mer-m83059689730596921147.00-14.39
CAediting_467581chr6_30596791_+ENSG00000204574.11ENST00000475993hsa-miR-118430596784305967907mer-m83059676930596791155.00-26.46
CAediting_467581chr6_30596791_+ENSG00000204574.11ENST00000475993hsa-miR-118430596784305967907mer-m83059676930596791155.00-26.46
CAediting_467581chr6_30596791_+ENSG00000204574.11ENST00000475993hsa-miR-118430596784305967907mer-m83059676930596791155.00-26.46
CAediting_467581chr6_30596791_+ENSG00000204574.11ENST00000475993hsa-miR-59630596787305967937mer-m83059677430596794140.00-17.70

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_467576chr6_30596598_+ENSG00000204574.11ENST00000475993hsa-miR-20a-3p30596596305966027mer-m83059658230596603141-12.42
CAediting_467588chr6_30596917_+ENSG00000204574.11ENST00000475993hsa-miR-3064-5p30596916305969216mer3059690230596922140-20.97
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-3127-3p30596897305969037mer-m83059688330596904145-20.54
CAediting_467579chr6_30596621_+ENSG00000204574.11ENST00000475993hsa-miR-317430596617305966226mer3059660230596623142-21.71
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-320a-5p30596895305969017mer-m83059688130596902147-13.51
CAediting_467581chr6_30596791_+ENSG00000204574.11ENST00000475993hsa-miR-432730596786305967927mer-m83059677530596793147-16.56
CAediting_467584chr6_30596868_+ENSG00000204574.11ENST00000475993hsa-miR-445530596864305968718mer-1a3059685630596871146-16.7
CAediting_467587chr6_30596909_+ENSG00000204574.11ENST00000475993hsa-miR-4761-5p30596907305969137mer-m83059689530596914147-17.96
CAediting_467588chr6_30596917_+ENSG00000204574.11ENST00000475993hsa-miR-479430596915305969217mer-m83059690230596922144-17.45
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-5088-3p30596896305969027mer-m83059688230596903146-16.37
CAediting_467582chr6_30596840_+ENSG00000204574.11ENST00000475993hsa-miR-569030596837305968437mer-m83059682430596844145-16.35
CAediting_467588chr6_30596917_+ENSG00000204574.11ENST00000475993hsa-miR-664a-5p30596915305969217mer-m83059690030596922148-15.43
CAediting_467584chr6_30596868_+ENSG00000204574.11ENST00000475993hsa-miR-6748-5p30596866305968727mer-m83059685330596873149-20.97
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-6756-3p30596897305969037mer-m83059688530596904143-16.61
CAediting_467586chr6_30596900_+ENSG00000204574.11ENST00000475993hsa-miR-942-5p30596894305969007mer-m83059688030596901147-13.87

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_580943chr7_100356700_+ENSG00000204574.11ENST00000475993hsa-miR-6840-3p30596799305968057mer-m83059678530596806148-23.99
CAediting_524911chr7_5495852_-ENSG00000204574.11ENST00000475993hsa-miR-589-3p30596740305967467mer-m83059672330596747154-14.94
CAediting_468389chr6_31355314_-ENSG00000204574.11ENST00000376545hsa-miR-6891-5p30590766305907727mer-m83059075430590773154-26.69
CAediting_468389chr6_31355314_-ENSG00000204574.11ENST00000475993hsa-miR-6891-5p30590766305907727mer-m83059075430590773154-26.69

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ABCF1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000475993.1nonsense_mediated_decaySoverviewSoverview
ENST00000479542.1retained_intronSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_467576ENST00000475993.1chr6_30596598_+-1034.90-1034.90-1050.70
CAediting_467577ENST00000475993.1chr6_30596605_+-1036.90-1034.90-1050.70
CAediting_467578ENST00000475993.1chr6_30596611_+-1034.90-1034.90-1050.70
CAediting_467579ENST00000475993.1chr6_30596621_+-1034.90-1034.90-1050.70
CAediting_467580ENST00000475993.1chr6_30596647_+-1037.00-1034.90-1050.70
CAediting_467581ENST00000475993.1chr6_30596791_+-1034.90-1034.90-1050.70
CAediting_467582ENST00000475993.1chr6_30596840_+-1037.50-1034.90-1050.70
CAediting_467583ENST00000475993.1chr6_30596850_+-1035.20-1034.90-1050.70
CAediting_467584ENST00000475993.1chr6_30596868_+-1039.30-1034.90-1050.70
CAediting_467585ENST00000475993.1chr6_30596895_+-1036.00-1034.90-1050.70
CAediting_467586ENST00000475993.1chr6_30596900_+-1035.60-1034.90-1050.70
CAediting_467587ENST00000475993.1chr6_30596909_+-1038.10-1034.90-1050.70
CAediting_467588ENST00000475993.1chr6_30596917_+-1034.70-1034.90-1050.70
CAediting_467482ENST00000479542.1chr6_30589456_+-320.50-319.20-320.50
CAediting_467483ENST00000479542.1chr6_30589509_+-319.20-319.20-320.50

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Relation with ADAR for ABCF1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
STADCAediting_467506chr6_30591876_+..0.008858872387997670.352907077897025..
BLCACAediting_467518chr6_30592051_+0.00775116668528740.256114760714812....
BRCACAediting_467518chr6_30592051_+0.003616756202488070.160238398755953..0.04697915286911940.10977285022643
LUSCCAediting_467518chr6_30592051_+0.003592929704719810.247169027257415..0.02067769016120060.197540702482801
STADCAediting_467518chr6_30592051_+..0.01182334427594720.20439196304199..
ESCACAediting_467518chr6_30592051_+0.02326331081541590.24174196168514....
OVCAediting_467518chr6_30592051_+0.002103425041786180.268385356244706....
SKCMCAediting_467518chr6_30592051_+..0.001611908287721220.240802844638423..
BLCACAediting_467532chr6_30593111_+0.03495235693016250.240723634416485....
BRCACAediting_467532chr6_30593111_+0.002309993866289940.286384060382702....
UCECCAediting_467532chr6_30593111_+0.01157476348777060.344347629222601..0.01404603800768580.335526672877658
SKCMCAediting_467532chr6_30593111_+0.0005919257495340230.406018446950505....
BRCACAediting_467544chr6_30593152_+0.001362056888396740.394861663358266....
BLCACAediting_467555chr6_30593231_+0.006793705463287210.25439927626445....
CESCCAediting_467555chr6_30593231_+0.002269072963823940.3407285778290580.005836590513186660.309443774497545..
TGCTCAediting_467555chr6_30593231_+0.005154359789949480.362597065124652....
BLCACAediting_467557chr6_30593244_+0.01674496243615330.227689564840794....
BRCACAediting_467557chr6_30593244_+0.01141529240248070.219578437555425....
LUADCAediting_467557chr6_30593244_+0.001998145471365230.363222502011861....
PRADCAediting_467557chr6_30593244_+0.04901539684919240.249066479043431....
HNSCCAediting_467557chr6_30593244_+0.002340103504929240.33766192998739....
UCECCAediting_467557chr6_30593244_+0.01650316785213310.291993330406117..0.01167530181459740.306405034281237
SKCMCAediting_467557chr6_30593244_+0.0001967636183756810.347810363890243....
TGCTCAediting_467557chr6_30593244_+0.0007365099753834350.396804467907139....

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Relation with cancer stages for ABCF1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_467555chr6_30593231_+0.01936284809791180.221697875184047
ESCAclinical_stageCAediting_467532chr6_30593111_+0.00387446618315846-0.644650975459238

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Relation with survival for ABCF1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LUADCAediting_467532chr6_30593111_+0.0001347913271598780.00056619710086.2
OVCAediting_467515chr6_30592024_+0.0005830825519701490.004649717.1798

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RelatedDrugs for ABCF1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ABCF1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
ABCF1C0020517Hypersensitivity1CTD_human
ABCF1C0032285Pneumonia1CTD_human
ABCF1C0032300Lobar Pneumonia1CTD_human
ABCF1C0235874Disease Exacerbation1CTD_human
ABCF1C0887898Experimental Lung Inflammation1CTD_human
ABCF1C1527304Allergic Reaction1CTD_human
ABCF1C3714636Pneumonitis1CTD_human