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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TCF25 (CAeditome ID:22980)

Gene summary for TCF25

check button Gene summary
Gene informationGene symbol

TCF25

Gene ID

22980

Gene nametranscription factor 25
SynonymsFKSG26|Hulp1|NULP1|PRO2620|hKIAA1049
Cytomap

16q24.3

Type of geneprotein-coding
Descriptiontranscription factor 25TCF-25nuclear localized protein 1transcription factor 25 (basic helix-loop-helix)
Modification date20210518
UniProtAcc

Q9BQ70

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TCF25

GO:0003714

Transcription factor 25

16574069

TCF25

GO:0000122

Transcription factor 25

16574069

TCF25

GO:0005634

Transcription factor 25

16574069


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RNA A-to-I events for TCF25

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000141002.17

check button RNA A-to-I editing events in Cancer.
CAediting_1146148(89873825, +), CAediting_1146149(89874719, +), CAediting_1146150(89874740, +), CAediting_1146151(89874748, +), CAediting_1146152(89874802, +), CAediting_1146153(89874833, +), CAediting_1146154(89874850, +), CAediting_1146155(89874866, +), CAediting_1146156(89874888, +), CAediting_1146157(89875019, +), CAediting_1146158(89875026, +), CAediting_1146159(89875069, +), CAediting_1146160(89875139, +), CAediting_1146161(89876782, +), CAediting_1146162(89876835, +), CAediting_1146163(89876938, +), CAediting_1146164(89876982, +), CAediting_1146165(89877008, +), CAediting_1146166(89877027, +), CAediting_1146167(89877227, +), CAediting_1146168(89877229, +), CAediting_1146169(89877247, +), CAediting_1146170(89877304, +), CAediting_1146171(89877305, +), CAediting_1146172(89877345, +), CAediting_1146173(89877346, +), CAediting_1146174(89878049, +), CAediting_1146175(89878915, +), CAediting_1146176(89880091, +), CAediting_1146177(89881463, +), CAediting_1146178(89881647, +), CAediting_1146179(89882279, +), CAediting_1146180(89882334, +), CAediting_1146181(89882417, +), CAediting_1146182(89882839, +), CAediting_1146183(89882840, +), CAediting_1146184(89886307, +), CAediting_1146185(89886683, +), CAediting_1146186(89886790, +), CAediting_1146187(89886858, +), CAediting_1146188(89887103, +), CAediting_1146189(89887113, +), CAediting_1146190(89887133, +), CAediting_1146191(89887138, +), CAediting_1146192(89887162, +), CAediting_1146193(89888002, +), CAediting_1146194(89888046, +), CAediting_1146195(89888083, +), CAediting_1146196(89888112, +), CAediting_1146197(89888118, +), CAediting_1146198(89888159, +), CAediting_1146199(89888163, +), CAediting_1146200(89888207, +), CAediting_1146201(89888324, +), CAediting_1146202(89888332, +), CAediting_1146203(89888510, +), CAediting_1146204(89888520, +), CAediting_1146205(89888803, +), CAediting_1146206(89889226, +), CAediting_1146207(89889232, +), CAediting_1146208(89889277, +), CAediting_1146209(89889278, +), CAediting_1146210(89889295, +), CAediting_1146211(89889317, +), CAediting_1146212(89889360, +), CAediting_1146213(89889363, +), CAediting_1146214(89889364, +), CAediting_1146215(89889367, +), CAediting_1146216(89889397, +), CAediting_1146217(89889412, +), CAediting_1146218(89889437, +), CAediting_1146219(89889438, +), CAediting_1146220(89889439, +), CAediting_1146221(89889445, +), CAediting_1146222(89889457, +), CAediting_1146223(89889467, +), CAediting_1146224(89889733, +), CAediting_1146225(89889784, +), CAediting_1146226(89889802, +), CAediting_1146227(89889888, +), CAediting_1146228(89889987, +), CAediting_1146229(89889995, +), CAediting_1146230(89889999, +), CAediting_1146231(89890053, +), CAediting_1146232(89890104, +), CAediting_1146233(89890105, +), CAediting_1146234(89890116, +), CAediting_1146235(89890176, +), CAediting_1146236(89891856, +), CAediting_1146237(89891905, +), CAediting_1146238(89894695, +), CAediting_1146239(89894708, +), CAediting_1146240(89894712, +), CAediting_1146241(89894786, +), CAediting_1146242(89894802, +), CAediting_1146243(89894810, +), CAediting_1146244(89894811, +), CAediting_1146245(89894819, +), CAediting_1146246(89894828, +), CAediting_1146247(89894867, +), CAediting_1146248(89894880, +), CAediting_1146249(89894897, +), CAediting_1146250(89894907, +), CAediting_1146251(89894919, +), CAediting_1146252(89895405, +), CAediting_1146253(89896952, +), CAediting_1146254(89903415, +), CAediting_1146255(89903459, +), CAediting_1146256(89903461, +), CAediting_1146257(89903464, +), CAediting_1146258(89903470, +), CAediting_1146259(89903577, +), CAediting_1146260(89903597, +), CAediting_1146261(89903619, +), CAediting_1146262(89903630, +), CAediting_1146263(89903644, +), CAediting_1146264(89903645, +), CAediting_1146265(89903650, +), CAediting_1146266(89903673, +), CAediting_1146267(89903687, +), CAediting_1146268(89903696, +), CAediting_1146269(89903713, +), CAediting_1146270(89903718, +), CAediting_1146271(89903727, +), CAediting_1146272(89903789, +), CAediting_1146273(89904596, +), CAediting_1146274(89909187, +), CAediting_1146275(89909220, +), CAediting_1146276(89909244, +), CAediting_1146277(89909256, +), CAediting_1146278(89909257, +), CAediting_1146279(89909271, +), CAediting_1146280(89909279, +), CAediting_1146281(89909294, +), CAediting_1146282(89909295, +), CAediting_1146283(89909300, +), CAediting_1146284(89909301, +), CAediting_1146285(89909311, +), CAediting_1146286(89909323, +), CAediting_1146287(89909324, +), CAediting_1146288(89909364, +), CAediting_1146289(89909400, +), CAediting_1146290(89909421, +), CAediting_1146291(89909431, +), CAediting_1146292(89909432, +), CAediting_1146293(89909445, +), CAediting_1146294(89909456, +), CAediting_1146295(89909557, +), CAediting_1146296(89909563, +), CAediting_1146297(89909571, +), CAediting_1146298(89909587, +), CAediting_1146299(89909598, +), CAediting_1146300(89909599, +), CAediting_1146301(89909605, +), CAediting_1146302(89909606, +), CAediting_1146303(89909623, +),

Top

RNA editing positional annotations for TCF25 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1146148chr16_89873825_+exonic
CAediting_1146149chr16_89874719_+ncRNA_exonic
CAediting_1146150chr16_89874740_+ncRNA_exonic
CAediting_1146151chr16_89874748_+ncRNA_exonic
CAediting_1146152chr16_89874802_+ncRNA_exonic
CAediting_1146153chr16_89874833_+ncRNA_exonic
CAediting_1146154chr16_89874850_+ncRNA_exonic
CAediting_1146155chr16_89874866_+ncRNA_intronic
CAediting_1146156chr16_89874888_+ncRNA_intronic
CAediting_1146157chr16_89875019_+ncRNA_intronic
CAediting_1146158chr16_89875026_+ncRNA_intronic
CAediting_1146159chr16_89875069_+ncRNA_intronic
CAediting_1146160chr16_89875139_+ncRNA_intronic
CAediting_1146161chr16_89876782_+ncRNA_intronic
CAediting_1146162chr16_89876835_+ncRNA_intronic
CAediting_1146163chr16_89876938_+ncRNA_intronic
CAediting_1146164chr16_89876982_+ncRNA_intronic
CAediting_1146165chr16_89877008_+ncRNA_intronic
CAediting_1146166chr16_89877027_+ncRNA_intronic
CAediting_1146167chr16_89877227_+ncRNA_intronic
CAediting_1146168chr16_89877229_+ncRNA_intronic
CAediting_1146169chr16_89877247_+ncRNA_intronic
CAediting_1146170chr16_89877304_+ncRNA_intronic
CAediting_1146171chr16_89877305_+ncRNA_intronic
CAediting_1146172chr16_89877345_+ncRNA_intronic
CAediting_1146173chr16_89877346_+ncRNA_intronic
CAediting_1146174chr16_89878049_+ncRNA_intronic
CAediting_1146175chr16_89878915_+ncRNA_intronic
CAediting_1146176chr16_89880091_+ncRNA_intronic
CAediting_1146177chr16_89881463_+ncRNA_intronic
CAediting_1146178chr16_89881647_+ncRNA_intronic
CAediting_1146179chr16_89882279_+ncRNA_intronic
CAediting_1146180chr16_89882334_+ncRNA_intronic
CAediting_1146181chr16_89882417_+ncRNA_intronic
CAediting_1146182chr16_89882839_+ncRNA_intronic
CAediting_1146183chr16_89882840_+ncRNA_intronic
CAediting_1146184chr16_89886307_+ncRNA_intronic
CAediting_1146185chr16_89886683_+ncRNA_intronic
CAediting_1146186chr16_89886790_+ncRNA_intronic
CAediting_1146187chr16_89886858_+ncRNA_intronic
CAediting_1146188chr16_89887103_+ncRNA_intronic
CAediting_1146189chr16_89887113_+ncRNA_intronic
CAediting_1146190chr16_89887133_+ncRNA_intronic
CAediting_1146191chr16_89887138_+ncRNA_intronic
CAediting_1146192chr16_89887162_+ncRNA_intronic
CAediting_1146193chr16_89888002_+ncRNA_intronic
CAediting_1146194chr16_89888046_+ncRNA_intronic
CAediting_1146195chr16_89888083_+ncRNA_intronic
CAediting_1146196chr16_89888112_+ncRNA_intronic
CAediting_1146197chr16_89888118_+ncRNA_intronic
CAediting_1146198chr16_89888159_+ncRNA_intronic
CAediting_1146199chr16_89888163_+ncRNA_intronic
CAediting_1146200chr16_89888207_+ncRNA_intronic
CAediting_1146201chr16_89888324_+ncRNA_intronic
CAediting_1146202chr16_89888332_+ncRNA_intronic
CAediting_1146203chr16_89888510_+ncRNA_intronic
CAediting_1146204chr16_89888520_+ncRNA_intronic
CAediting_1146205chr16_89888803_+ncRNA_intronic
CAediting_1146206chr16_89889226_+splicing
CAediting_1146207chr16_89889232_+exonic
CAediting_1146208chr16_89889277_+ncRNA_intronic
CAediting_1146209chr16_89889278_+ncRNA_intronic
CAediting_1146210chr16_89889295_+ncRNA_intronic
CAediting_1146211chr16_89889317_+ncRNA_intronic
CAediting_1146212chr16_89889360_+ncRNA_intronic
CAediting_1146213chr16_89889363_+ncRNA_intronic
CAediting_1146214chr16_89889364_+ncRNA_intronic
CAediting_1146215chr16_89889367_+ncRNA_intronic
CAediting_1146216chr16_89889397_+ncRNA_intronic
CAediting_1146217chr16_89889412_+ncRNA_intronic
CAediting_1146218chr16_89889437_+ncRNA_intronic
CAediting_1146219chr16_89889438_+ncRNA_intronic
CAediting_1146220chr16_89889439_+ncRNA_intronic
CAediting_1146221chr16_89889445_+ncRNA_intronic
CAediting_1146222chr16_89889457_+ncRNA_intronic
CAediting_1146223chr16_89889467_+ncRNA_intronic
CAediting_1146224chr16_89889733_+ncRNA_intronic
CAediting_1146225chr16_89889784_+ncRNA_intronic
CAediting_1146226chr16_89889802_+ncRNA_intronic
CAediting_1146227chr16_89889888_+ncRNA_intronic
CAediting_1146228chr16_89889987_+ncRNA_intronic
CAediting_1146229chr16_89889995_+ncRNA_intronic
CAediting_1146230chr16_89889999_+ncRNA_intronic
CAediting_1146231chr16_89890053_+ncRNA_intronic
CAediting_1146232chr16_89890104_+ncRNA_intronic
CAediting_1146233chr16_89890105_+ncRNA_intronic
CAediting_1146234chr16_89890116_+ncRNA_intronic
CAediting_1146235chr16_89890176_+ncRNA_intronic
CAediting_1146236chr16_89891856_+ncRNA_intronic
CAediting_1146237chr16_89891905_+ncRNA_intronic
CAediting_1146238chr16_89894695_+ncRNA_intronic
CAediting_1146239chr16_89894708_+ncRNA_intronic
CAediting_1146240chr16_89894712_+ncRNA_intronic
CAediting_1146241chr16_89894786_+ncRNA_intronic
CAediting_1146242chr16_89894802_+ncRNA_intronic
CAediting_1146243chr16_89894810_+ncRNA_intronic
CAediting_1146244chr16_89894811_+ncRNA_intronic
CAediting_1146245chr16_89894819_+ncRNA_intronic
CAediting_1146246chr16_89894828_+ncRNA_intronic
CAediting_1146247chr16_89894867_+ncRNA_intronic
CAediting_1146248chr16_89894880_+ncRNA_intronic
CAediting_1146249chr16_89894897_+ncRNA_intronic
CAediting_1146250chr16_89894907_+ncRNA_intronic
CAediting_1146251chr16_89894919_+ncRNA_intronic
CAediting_1146252chr16_89895405_+ncRNA_intronic
CAediting_1146253chr16_89896952_+ncRNA_intronic
CAediting_1146254chr16_89903415_+ncRNA_intronic
CAediting_1146255chr16_89903459_+ncRNA_intronic
CAediting_1146256chr16_89903461_+ncRNA_intronic
CAediting_1146257chr16_89903464_+ncRNA_intronic
CAediting_1146258chr16_89903470_+ncRNA_intronic
CAediting_1146259chr16_89903577_+ncRNA_intronic
CAediting_1146260chr16_89903597_+ncRNA_intronic
CAediting_1146261chr16_89903619_+ncRNA_intronic
CAediting_1146262chr16_89903630_+ncRNA_intronic
CAediting_1146263chr16_89903644_+ncRNA_intronic
CAediting_1146264chr16_89903645_+ncRNA_intronic
CAediting_1146265chr16_89903650_+ncRNA_intronic
CAediting_1146266chr16_89903673_+ncRNA_intronic
CAediting_1146267chr16_89903687_+ncRNA_intronic
CAediting_1146268chr16_89903696_+ncRNA_intronic
CAediting_1146269chr16_89903713_+ncRNA_intronic
CAediting_1146270chr16_89903718_+ncRNA_intronic
CAediting_1146271chr16_89903727_+ncRNA_intronic
CAediting_1146272chr16_89903789_+ncRNA_intronic
CAediting_1146273chr16_89904596_+ncRNA_exonic
CAediting_1146274chr16_89909187_+ncRNA_intronic
CAediting_1146275chr16_89909220_+ncRNA_intronic
CAediting_1146276chr16_89909244_+ncRNA_intronic
CAediting_1146277chr16_89909256_+ncRNA_intronic
CAediting_1146278chr16_89909257_+ncRNA_intronic
CAediting_1146279chr16_89909271_+ncRNA_intronic
CAediting_1146280chr16_89909279_+ncRNA_intronic
CAediting_1146281chr16_89909294_+ncRNA_intronic
CAediting_1146282chr16_89909295_+ncRNA_intronic
CAediting_1146283chr16_89909300_+ncRNA_intronic
CAediting_1146284chr16_89909301_+ncRNA_intronic
CAediting_1146285chr16_89909311_+ncRNA_intronic
CAediting_1146286chr16_89909323_+ncRNA_intronic
CAediting_1146287chr16_89909324_+ncRNA_intronic
CAediting_1146288chr16_89909364_+ncRNA_intronic
CAediting_1146289chr16_89909400_+ncRNA_intronic
CAediting_1146290chr16_89909421_+ncRNA_intronic
CAediting_1146291chr16_89909431_+ncRNA_exonic
CAediting_1146292chr16_89909432_+ncRNA_exonic
CAediting_1146293chr16_89909445_+ncRNA_exonic
CAediting_1146294chr16_89909456_+ncRNA_exonic
CAediting_1146295chr16_89909557_+ncRNA_exonic
CAediting_1146296chr16_89909563_+ncRNA_exonic
CAediting_1146297chr16_89909571_+ncRNA_exonic
CAediting_1146298chr16_89909587_+ncRNA_exonic
CAediting_1146299chr16_89909598_+ncRNA_exonic
CAediting_1146300chr16_89909599_+ncRNA_exonic
CAediting_1146301chr16_89909605_+ncRNA_exonic
CAediting_1146302chr16_89909606_+ncRNA_exonic
CAediting_1146303chr16_89909623_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1146149chr16_89874719_+SINEAluAluJb
CAediting_1146150chr16_89874740_+SINEAluAluJb
CAediting_1146151chr16_89874748_+SINEAluAluJb
CAediting_1146152chr16_89874802_+SINEAluAluJb
CAediting_1146153chr16_89874833_+SINEAluAluJb
CAediting_1146154chr16_89874850_+SINEAluAluJb
CAediting_1146155chr16_89874866_+SINEAluAluJb
CAediting_1146156chr16_89874888_+SINEAluAluJb
CAediting_1146157chr16_89875019_+SINEAluFRAM
CAediting_1146158chr16_89875026_+SINEAluFRAM
CAediting_1146159chr16_89875069_+SINEAluFRAM
CAediting_1146160chr16_89875139_+SINEAluFRAM
CAediting_1146161chr16_89876782_+SINEAluAluYh3
CAediting_1146162chr16_89876835_+SINEAluAluYh3
CAediting_1146163chr16_89876938_+SINEAluAluYh3
CAediting_1146164chr16_89876982_+SINEAluAluSx1
CAediting_1146165chr16_89877008_+SINEAluAluSx1
CAediting_1146166chr16_89877027_+SINEAluAluSx1
CAediting_1146167chr16_89877227_+SINEAluAluJr
CAediting_1146168chr16_89877229_+SINEAluAluJr
CAediting_1146169chr16_89877247_+SINEAluAluJr
CAediting_1146170chr16_89877304_+SINEAluAluJr
CAediting_1146171chr16_89877305_+SINEAluAluJr
CAediting_1146172chr16_89877345_+SINEAluAluJr
CAediting_1146173chr16_89877346_+SINEAluAluJr
CAediting_1146174chr16_89878049_+SINEAluAluJb
CAediting_1146175chr16_89878915_+SINEAluAluY
CAediting_1146177chr16_89881463_+SINEAluAluJo
CAediting_1146178chr16_89881647_+SINEAluAluJo
CAediting_1146179chr16_89882279_+SINEAluAluJb
CAediting_1146180chr16_89882334_+SINEAluAluJb
CAediting_1146181chr16_89882417_+SINEAluAluJb
CAediting_1146182chr16_89882839_+SINEAluAluSx1
CAediting_1146183chr16_89882840_+SINEAluAluSx1
CAediting_1146184chr16_89886307_+SINEAluAluY
CAediting_1146185chr16_89886683_+SINEAluAluSp
CAediting_1146186chr16_89886790_+SINEAluAluSx1
CAediting_1146187chr16_89886858_+SINEAluAluSx1
CAediting_1146188chr16_89887103_+SINEAluAluJo
CAediting_1146189chr16_89887113_+SINEAluAluJo
CAediting_1146190chr16_89887133_+SINEAluAluJo
CAediting_1146191chr16_89887138_+SINEAluAluJo
CAediting_1146192chr16_89887162_+SINEAluAluJo
CAediting_1146193chr16_89888002_+SINEAluAluSx1
CAediting_1146194chr16_89888046_+SINEAluAluSx1
CAediting_1146195chr16_89888083_+SINEAluAluSx1
CAediting_1146196chr16_89888112_+SINEAluAluSx1
CAediting_1146197chr16_89888118_+SINEAluAluSx1
CAediting_1146198chr16_89888159_+SINEAluAluSx1
CAediting_1146199chr16_89888163_+SINEAluAluSx1
CAediting_1146200chr16_89888207_+SINEAluAluSx1
CAediting_1146201chr16_89888324_+SINEAluAluSp
CAediting_1146202chr16_89888332_+SINEAluAluSp
CAediting_1146203chr16_89888510_+SINEAluAluSp
CAediting_1146204chr16_89888520_+SINEAluAluSp
CAediting_1146205chr16_89888803_+SINEAluAluSx
CAediting_1146206chr16_89889226_+SINEAluAluJr
CAediting_1146207chr16_89889232_+SINEAluAluJr
CAediting_1146208chr16_89889277_+SINEAluAluJr
CAediting_1146209chr16_89889278_+SINEAluAluJr
CAediting_1146210chr16_89889295_+SINEAluAluJr
CAediting_1146211chr16_89889317_+SINEAluAluJr
CAediting_1146212chr16_89889360_+SINEAluAluJr
CAediting_1146213chr16_89889363_+SINEAluAluJr
CAediting_1146214chr16_89889364_+SINEAluAluJr
CAediting_1146215chr16_89889367_+SINEAluAluJr
CAediting_1146216chr16_89889397_+SINEAluAluJr
CAediting_1146217chr16_89889412_+SINEAluAluJr
CAediting_1146218chr16_89889437_+SINEAluAluJr
CAediting_1146219chr16_89889438_+SINEAluAluJr
CAediting_1146220chr16_89889439_+SINEAluAluJr
CAediting_1146221chr16_89889445_+SINEAluAluJr
CAediting_1146222chr16_89889457_+SINEAluAluJr
CAediting_1146223chr16_89889467_+SINEAluAluJr
CAediting_1146224chr16_89889733_+SINEAluAluSp
CAediting_1146225chr16_89889784_+SINEAluAluSp
CAediting_1146226chr16_89889802_+SINEAluAluSp
CAediting_1146227chr16_89889888_+SINEAluAluSz
CAediting_1146228chr16_89889987_+SINEAluAluSz
CAediting_1146229chr16_89889995_+SINEAluAluSz
CAediting_1146230chr16_89889999_+SINEAluAluSz
CAediting_1146231chr16_89890053_+SINEAluAluSz
CAediting_1146232chr16_89890104_+SINEAluAluSz
CAediting_1146233chr16_89890105_+SINEAluAluSz
CAediting_1146234chr16_89890116_+SINEAluAluSz
CAediting_1146235chr16_89890176_+SINEAluFLAM_C
CAediting_1146236chr16_89891856_+SINEAluFRAM
CAediting_1146237chr16_89891905_+SINEAluFRAM
CAediting_1146238chr16_89894695_+SINEAluAluSz
CAediting_1146239chr16_89894708_+SINEAluAluSz
CAediting_1146240chr16_89894712_+SINEAluAluSz
CAediting_1146241chr16_89894786_+SINEAluAluSz
CAediting_1146242chr16_89894802_+SINEAluAluSz
CAediting_1146243chr16_89894810_+SINEAluAluSz
CAediting_1146244chr16_89894811_+SINEAluAluSz
CAediting_1146245chr16_89894819_+SINEAluAluSz
CAediting_1146246chr16_89894828_+SINEAluAluSz
CAediting_1146247chr16_89894867_+SINEAluAluSz
CAediting_1146248chr16_89894880_+SINEAluAluSz
CAediting_1146249chr16_89894897_+SINEAluAluSz
CAediting_1146250chr16_89894907_+SINEAluAluSz
CAediting_1146251chr16_89894919_+SINEAluAluSz
CAediting_1146252chr16_89895405_+SINEAluAluY
CAediting_1146253chr16_89896952_+SINEAluAluJr
CAediting_1146254chr16_89903415_+SINEAluAluJb
CAediting_1146255chr16_89903459_+SINEAluAluJb
CAediting_1146256chr16_89903461_+SINEAluAluJb
CAediting_1146257chr16_89903464_+SINEAluAluJb
CAediting_1146258chr16_89903470_+SINEAluAluJb
CAediting_1146259chr16_89903577_+SINEAluAluSx
CAediting_1146260chr16_89903597_+SINEAluAluSx
CAediting_1146261chr16_89903619_+SINEAluAluSx
CAediting_1146262chr16_89903630_+SINEAluAluSx
CAediting_1146263chr16_89903644_+SINEAluAluSx
CAediting_1146264chr16_89903645_+SINEAluAluSx
CAediting_1146265chr16_89903650_+SINEAluAluSx
CAediting_1146266chr16_89903673_+SINEAluAluSx
CAediting_1146267chr16_89903687_+SINEAluAluSx
CAediting_1146268chr16_89903696_+SINEAluAluSx
CAediting_1146269chr16_89903713_+SINEAluAluSx
CAediting_1146270chr16_89903718_+SINEAluAluSx
CAediting_1146271chr16_89903727_+SINEAluAluSx
CAediting_1146272chr16_89903789_+SINEAluAluSx
CAediting_1146273chr16_89904596_+SINEAluAluJb
CAediting_1146274chr16_89909187_+SINEAluAluSx
CAediting_1146275chr16_89909220_+SINEAluAluSx
CAediting_1146276chr16_89909244_+SINEAluAluSc
CAediting_1146277chr16_89909256_+SINEAluAluSc
CAediting_1146278chr16_89909257_+SINEAluAluSc
CAediting_1146279chr16_89909271_+SINEAluAluSc
CAediting_1146280chr16_89909279_+SINEAluAluSc
CAediting_1146281chr16_89909294_+SINEAluAluSc
CAediting_1146282chr16_89909295_+SINEAluAluSc
CAediting_1146283chr16_89909300_+SINEAluAluSc
CAediting_1146284chr16_89909301_+SINEAluAluSc
CAediting_1146285chr16_89909311_+SINEAluAluSc
CAediting_1146286chr16_89909323_+SINEAluAluSc
CAediting_1146287chr16_89909324_+SINEAluAluSc
CAediting_1146288chr16_89909364_+SINEAluAluSc
CAediting_1146289chr16_89909400_+SINEAluAluSc
CAediting_1146290chr16_89909421_+SINEAluAluSc
CAediting_1146291chr16_89909431_+SINEAluAluSc
CAediting_1146292chr16_89909432_+SINEAluAluSc
CAediting_1146293chr16_89909445_+SINEAluAluSc
CAediting_1146294chr16_89909456_+SINEAluAluSc
CAediting_1146295chr16_89909557_+SINEAluAluSx
CAediting_1146296chr16_89909563_+SINEAluAluSx
CAediting_1146297chr16_89909571_+SINEAluAluSx
CAediting_1146298chr16_89909587_+SINEAluAluSx
CAediting_1146299chr16_89909598_+SINEAluAluSx
CAediting_1146300chr16_89909599_+SINEAluAluSx
CAediting_1146301chr16_89909605_+SINEAluAluSx
CAediting_1146302chr16_89909606_+SINEAluAluSx
CAediting_1146303chr16_89909623_+SINEAluAluSx

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RNA A-to-I editing events in the alternative splicing sites for TCF25

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000141002.17.TCF25.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000141002.17.TCF25.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TCF25

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TCF25

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for TCF25

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1146210chr16_89889295_+ENSG00000141002.17ENST00000614813hsa-miR-452389889290898892967mer-m88988927789889297147.00-22.92
CAediting_1146212chr16_89889360_+ENSG00000141002.17ENST00000614813hsa-miR-58789889356898893638mer-1a8988934389889363157.00-14.84
CAediting_1146213chr16_89889363_+ENSG00000141002.17ENST00000614813hsa-miR-6818-3p89889359898893668mer-1a8988934589889366140.00-10.96
CAediting_1146215chr16_89889367_+ENSG00000141002.17ENST00000614813hsa-miR-10a-5p89889363898893697mer-m88988934889889370141.00-11.42
CAediting_1146215chr16_89889367_+ENSG00000141002.17ENST00000614813hsa-miR-10b-5p89889363898893697mer-m88988934889889370140.00-11.42
CAediting_1146215chr16_89889367_+ENSG00000141002.17ENST00000614813hsa-miR-4725-5p89889364898893707mer-m88988935189889371140.00-15.96
CAediting_1146215chr16_89889367_+ENSG00000141002.17ENST00000614813hsa-miR-504-5p89889364898893707mer-m88988934989889371146.00-18.76
CAediting_1146217chr16_89889412_+ENSG00000141002.17ENST00000614813hsa-miR-607889889408898894158mer-1a8988939689889415156.00-22.40
CAediting_1146221chr16_89889445_+ENSG00000141002.17ENST00000614813hsa-miR-383-3p89889438898894447mer-m88988942789889445140.00-14.40
CAediting_1146221chr16_89889445_+ENSG00000141002.17ENST00000614813hsa-miR-797789889441898894477mer-m88988943189889448140.00-13.07
CAediting_1146223chr16_89889467_+ENSG00000141002.17ENST00000614813hsa-miR-10394-3p89889465898894728mer-1a8988944589889472147.00-27.29
CAediting_1146223chr16_89889467_+ENSG00000141002.17ENST00000614813hsa-miR-317889889465898894728mer-1a8988945689889472145.00-25.79
CAediting_1146229chr16_89889995_+ENSG00000141002.17ENST00000614813hsa-miR-425-3p89889989898899957mer-m88988997689889996145.00-12.29
CAediting_1146229chr16_89889995_+ENSG00000141002.17ENST00000614813hsa-miR-6771-5p89889990898899956mer8988997789889996144.00-31.39
CAediting_1146230chr16_89889999_+ENSG00000141002.17ENST00000614813hsa-miR-3614-5p89889992898899987mer-m88988997689889999157.00-25.27
CAediting_1146230chr16_89889999_+ENSG00000141002.17ENST00000614813hsa-miR-4691-3p89889996898900027mer-m88988997689890003150.00-26.36
CAediting_1146233chr16_89890105_+ENSG00000141002.17ENST00000614813hsa-miR-3622a-3p89890101898901088mer-1a8989008789890108144.00-14.14
CAediting_1146233chr16_89890105_+ENSG00000141002.17ENST00000614813hsa-miR-3622b-3p89890101898901088mer-1a8989008889890108153.00-18.81
CAediting_1146233chr16_89890105_+ENSG00000141002.17ENST00000614813hsa-miR-544b89890099898901057mer-m88989008589890106149.00-19.04
CAediting_1146233chr16_89890105_+ENSG00000141002.17ENST00000614813hsa-miR-7162-3p89890098898901047mer-m88989008689890105143.00-16.95
CAediting_1146235chr16_89890176_+ENSG00000141002.17ENST00000614813hsa-miR-3189-3p89890170898901767mer-m88989015889890177143.00-22.43
CAediting_1146235chr16_89890176_+ENSG00000141002.17ENST00000614813hsa-miR-6813-3p89890171898901777mer-m88989015889890178140.00-10.92
CAediting_1146219chr16_89889438_+ENSG00000141002.17ENST00000614813hsa-miR-3059-3p89889433898894397mer-m88988941989889440154.00-22.15
CAediting_1146219chr16_89889438_+ENSG00000141002.17ENST00000614813hsa-miR-568489889434898894407mer-m88988942289889441140.00-11.04
CAediting_1146224chr16_89889733_+ENSG00000141002.17ENST00000614813hsa-miR-6509-3p89889729898897346mer8988971489889735140.00-15.61
CAediting_1146227chr16_89889888_+ENSG00000141002.17ENST00000614813hsa-miR-373-5p89889881898898888mer-1a8988986789889888149.00-12.89
CAediting_1146227chr16_89889888_+ENSG00000141002.17ENST00000614813hsa-miR-514b-5p89889883898898886mer8988986689889889150.00-18.21
CAediting_1146227chr16_89889888_+ENSG00000141002.17ENST00000614813hsa-miR-616-5p89889881898898888mer-1a8988986789889888140.00-11.46

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1146229chr16_89889995_+ENSG00000141002.17ENST00000614813hsa-miR-1212689889991898899988mer-1a8988997589889998155-14.03
CAediting_1146212chr16_89889360_+ENSG00000141002.17ENST00000614813hsa-miR-340-5p89889354898893596mer8988934189889360144-8.27
CAediting_1146225chr16_89889784_+ENSG00000141002.17ENST00000614813hsa-miR-3622a-3p89889781898897888mer-1a8988976789889788140-12.75
CAediting_1146225chr16_89889784_+ENSG00000141002.17ENST00000614813hsa-miR-3622b-3p89889781898897888mer-1a8988976889889788147-16.66
CAediting_1146224chr16_89889733_+ENSG00000141002.17ENST00000614813hsa-miR-3675-3p89889731898897377mer-m88988971589889738151-14.66
CAediting_1146218chr16_89889437_+ENSG00000141002.17ENST00000614813hsa-miR-426689889430898894378mer-1a8988942289889437140-13.32
CAediting_1146210chr16_89889295_+ENSG00000141002.17ENST00000614813hsa-miR-446389889293898892986mer8988928389889299151-29.29
CAediting_1146234chr16_89890116_+ENSG00000141002.17ENST00000614813hsa-miR-446389890113898901197mer-m88989010489890120142-19.79
CAediting_1146226chr16_89889802_+ENSG00000141002.17ENST00000614813hsa-miR-447889889799898898057mer-m88988979089889806150-23.73
CAediting_1146229chr16_89889995_+ENSG00000141002.17ENST00000614813hsa-miR-450a-1-3p89889989898899957mer-m88988997589889996147-10.48
CAediting_1146228chr16_89889987_+ENSG00000141002.17ENST00000614813hsa-miR-4649-3p89889981898899877mer-m88988996889889988140-14.11
CAediting_1146224chr16_89889733_+ENSG00000141002.17ENST00000614813hsa-miR-4684-5p89889730898897367mer-m88988971589889737155-14.87
CAediting_1146231chr16_89890053_+ENSG00000141002.17ENST00000614813hsa-miR-4684-5p89890050898900567mer-m88989003589890057155-13.2
CAediting_1146234chr16_89890116_+ENSG00000141002.17ENST00000614813hsa-miR-473089890109898901157mer-m88989009489890116146-20.13
CAediting_1146226chr16_89889802_+ENSG00000141002.17ENST00000614813hsa-miR-485-5p89889800898898067mer-m88988978689889807153-16.79
CAediting_1146216chr16_89889397_+ENSG00000141002.17ENST00000614813hsa-miR-489-3p89889390898893978mer-1a8988937889889397152-22.39
CAediting_1146230chr16_89889999_+ENSG00000141002.17ENST00000614813hsa-miR-569089889996898900027mer-m88988998389890003145-16.74
CAediting_1146222chr16_89889457_+ENSG00000141002.17ENST00000614813hsa-miR-6514-3p89889450898894567mer-m88988943489889457151-17.29
CAediting_1146226chr16_89889802_+ENSG00000141002.17ENST00000614813hsa-miR-6765-5p89889795898898017mer-m88988977389889802152-30.94
CAediting_1146210chr16_89889295_+ENSG00000141002.17ENST00000614813hsa-miR-6857-3p89889291898892977mer-m88988927889889298142-11.43
CAediting_1146226chr16_89889802_+ENSG00000141002.17ENST00000614813hsa-miR-7160-5p89889797898898037mer-m88988978789889804148-21.21
CAediting_1146228chr16_89889987_+ENSG00000141002.17ENST00000614813hsa-miR-7160-5p89889982898899887mer-m88988996989889989146-19
CAediting_1146225chr16_89889784_+ENSG00000141002.17ENST00000614813hsa-miR-7162-3p89889778898897847mer-m88988976689889785143-16.6
CAediting_1146210chr16_89889295_+ENSG00000141002.17ENST00000614813hsa-miR-873-3p89889293898892997mer-m88988928089889300146-22.34
CAediting_1146234chr16_89890116_+ENSG00000141002.17ENST00000614813hsa-miR-873-3p89890114898901207mer-m88989010089890121149-16.38

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000141002.17ENST00000564652hsa-miR-605-3p89883498898835058mer-1a8988348489883505152-17.06
CAediting_980496chr14_31014685_-ENSG00000141002.17ENST00000564652hsa-miR-624-3p89883375898833817mer-m88988336189883382142-16.55
CAediting_86358chr1_109598906_+ENSG00000141002.17ENST00000614813hsa-miR-197-5p89889789898897957mer-m88988977189889796143-35.68
CAediting_396018chr5_1062918_-ENSG00000141002.17ENST00000614813hsa-miR-463589890099898901057mer-m88989008689890106162-22.6
CAediting_580943chr7_100356700_+ENSG00000141002.17ENST00000614813hsa-miR-6840-3p89889639898896457mer-m88988963089889646141-27.37
CAediting_604450chr7_133034877_-ENSG00000141002.17ENST00000614813hsa-miR-365489889707898897137mer-m88988969689889714154-16.48
CAediting_1368054chr19_46709310_-ENSG00000141002.17ENST00000564652hsa-miR-320e89885919898859257mer-m88988590989885926159-24.39

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229413chr17_67471544_+ENSG00000141002.17ENST00000614813hsa-miR-548aa89890478898904836mer8989046189890484153-24.23
CAediting_1229414chr17_67471546_+ENSG00000141002.17ENST00000614813hsa-miR-548aa89890478898904836mer8989046189890484153-24.23
CAediting_580943chr7_100356700_+ENSG00000141002.17ENST00000614813hsa-miR-6840-3p89889958898899647mer-m88988994989889965141-25.22

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TCF25

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for TCF25

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for TCF25

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for TCF25

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for TCF25

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for TCF25

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource