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Editing gene: RALY (CAeditome ID:22913)

Gene summary for RALY

Gene summary

Gene information	Gene symbol	RALY
	Gene ID	22913
	Gene name	RALY heterogeneous nuclear ribonucleoprotein
	Synonyms	HNRPCL2\|P542
	Cytomap	20q11.22
	Type of gene	protein-coding
	Description	RNA-binding protein RalyRNA binding protein, autoantigenic (hnRNP-associated with lethal yellow homolog)RNA-binding protein (autoantigenic)RNA-binding protein (autoantigenic, hnRNP-associated with lethal yellow)autoantigen p542heterogeneous nuclear r
	Modification date	20210518
	UniProtAcc	Q9UKM9
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
RALY	GO:0005634	RNA-binding protein Raly	22720776
RALY	GO:0071013	RNA-binding protein Raly	11991638

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RNA A-to-I events for RALY

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000125970.10

RNA A-to-I editing events in Cancer.

CAediting_1416413(33997216, +), CAediting_1416414(33997295, +), CAediting_1416415(33997298, +), CAediting_1416416(33998940, +), CAediting_1416417(33998941, +), CAediting_1416418(33998951, +), CAediting_1416419(33998975, +), CAediting_1416420(33998976, +), CAediting_1416421(33998977, +), CAediting_1416422(33998978, +), CAediting_1416423(33998999, +), CAediting_1416424(33999003, +), CAediting_1416425(33999009, +), CAediting_1416426(33999010, +), CAediting_1416427(33999032, +), CAediting_1416428(33999045, +), CAediting_1416429(33999050, +), CAediting_1416430(33999051, +), CAediting_1416431(33999075, +), CAediting_1416432(33999087, +), CAediting_1416433(34005327, +), CAediting_1416434(34005362, +), CAediting_1416435(34005458, +), CAediting_1416436(34007697, +), CAediting_1416437(34007709, +), CAediting_1416438(34008714, +), CAediting_1416439(34008752, +), CAediting_1416440(34008831, +), CAediting_1416441(34009308, +), CAediting_1416442(34010280, +), CAediting_1416443(34010298, +), CAediting_1416444(34010303, +), CAediting_1416445(34010315, +), CAediting_1416446(34010358, +), CAediting_1416447(34011880, +), CAediting_1416448(34011945, +), CAediting_1416449(34011972, +), CAediting_1416450(34011987, +), CAediting_1416451(34011991, +), CAediting_1416452(34012010, +), CAediting_1416453(34012011, +), CAediting_1416454(34013358, +), CAediting_1416455(34013359, +), CAediting_1416456(34013389, +), CAediting_1416457(34028067, +), CAediting_1416458(34028099, +), CAediting_1416459(34028100, +), CAediting_1416460(34028108, +), CAediting_1416461(34028109, +), CAediting_1416462(34028110, +), CAediting_1416463(34028139, +), CAediting_1416464(34028145, +), CAediting_1416465(34028155, +), CAediting_1416466(34028165, +), CAediting_1416467(34028166, +), CAediting_1416468(34028175, +), CAediting_1416469(34028211, +), CAediting_1416470(34029223, +), CAediting_1416471(34029251, +), CAediting_1416472(34029252, +), CAediting_1416473(34029254, +), CAediting_1416474(34029258, +), CAediting_1416475(34029316, +), CAediting_1416476(34029317, +), CAediting_1416477(34029330, +), CAediting_1416478(34031981, +), CAediting_1416479(34032024, +), CAediting_1416480(34032096, +), CAediting_1416481(34032143, +), CAediting_1416482(34032146, +), CAediting_1416483(34032237, +), CAediting_1416484(34032240, +), CAediting_1416485(34034889, +), CAediting_1416486(34034898, +), CAediting_1416487(34034903, +), CAediting_1416488(34034936, +), CAediting_1416489(34034941, +), CAediting_1416490(34034964, +), CAediting_1416491(34034967, +), CAediting_1416492(34034975, +), CAediting_1416493(34034996, +), CAediting_1416494(34035006, +), CAediting_1416495(34035032, +), CAediting_1416496(34035038, +), CAediting_1416497(34035042, +), CAediting_1416498(34035049, +), CAediting_1416499(34035059, +), CAediting_1416500(34035062, +), CAediting_1416501(34035073, +), CAediting_1416502(34035074, +), CAediting_1416503(34035085, +), CAediting_1416504(34035087, +), CAediting_1416505(34035113, +), CAediting_1416506(34039925, +), CAediting_1416507(34039991, +), CAediting_1416508(34041985, +), CAediting_1416509(34041990, +), CAediting_1416510(34044369, +), CAediting_1416511(34044377, +), CAediting_1416512(34045049, +), CAediting_1416513(34045101, +), CAediting_1416514(34045177, +), CAediting_1416515(34048777, +), CAediting_1416516(34048801, +), CAediting_1416517(34053472, +), CAediting_1416518(34053501, +), CAediting_1416519(34053527, +), CAediting_1416520(34053586, +), CAediting_1416521(34053665, +), CAediting_1416522(34054562, +), CAediting_1416523(34054570, +), CAediting_1416524(34054571, +), CAediting_1416525(34054576, +), CAediting_1416526(34054597, +), CAediting_1416527(34054606, +), CAediting_1416528(34054616, +), CAediting_1416529(34054670, +), CAediting_1416530(34054679, +), CAediting_1416531(34054683, +), CAediting_1416532(34054746, +), CAediting_1416533(34054747, +), CAediting_1416534(34055063, +), CAediting_1416535(34055066, +), CAediting_1416536(34066242, +), CAediting_1416537(34066251, +), CAediting_1416538(34073913, +), CAediting_1416539(34074005, +), CAediting_1416540(34074048, +), CAediting_1416541(34074057, +), CAediting_1416542(34074595, +), CAediting_1416543(34074601, +), CAediting_1416544(34074602, +), CAediting_1416545(34074610, +), CAediting_1416546(34074625, +), CAediting_1416547(34074631, +), CAediting_1416548(34074639, +), CAediting_1416549(34074658, +), CAediting_1416550(34077390, +), CAediting_1416551(34082375, +), CAediting_1416552(34084179, +), CAediting_1416553(34085071, +), CAediting_1416554(34085086, +), CAediting_1416555(34085095, +), CAediting_1416556(34085111, +), CAediting_1416557(34085112, +), CAediting_1416558(34085116, +), CAediting_1416559(34085120, +), CAediting_1416560(34085127, +), CAediting_1416561(34085153, +), CAediting_1416562(34085159, +), CAediting_1416563(34085180, +), CAediting_1416564(34086027, +), CAediting_1416565(34086047, +), CAediting_1416566(34086057, +), CAediting_1416567(34086059, +), CAediting_1416568(34086091, +), CAediting_1416569(34086098, +), CAediting_1416570(34086110, +), CAediting_1416571(34086127, +), CAediting_1416572(34086132, +), CAediting_1416573(34086136, +), CAediting_1416574(34086139, +), CAediting_1416575(34086164, +), CAediting_1416576(34086197, +), CAediting_1416577(34086200, +), CAediting_1416578(34086209, +), CAediting_1416579(34087196, +), CAediting_1416580(34087354, +), CAediting_1416581(34087355, +), CAediting_1416582(34087381, +), CAediting_1416583(34087648, +),

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RNA editing positional annotations for RALY using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1416413	chr20_33997216_+	intronic
CAediting_1416414	chr20_33997295_+	intronic
CAediting_1416415	chr20_33997298_+	intronic
CAediting_1416416	chr20_33998940_+	intronic
CAediting_1416417	chr20_33998941_+	intronic
CAediting_1416418	chr20_33998951_+	intronic
CAediting_1416419	chr20_33998975_+	intronic
CAediting_1416420	chr20_33998976_+	intronic
CAediting_1416421	chr20_33998977_+	intronic
CAediting_1416422	chr20_33998978_+	intronic
CAediting_1416423	chr20_33998999_+	intronic
CAediting_1416424	chr20_33999003_+	intronic
CAediting_1416425	chr20_33999009_+	intronic
CAediting_1416426	chr20_33999010_+	intronic
CAediting_1416427	chr20_33999032_+	intronic
CAediting_1416428	chr20_33999045_+	intronic
CAediting_1416429	chr20_33999050_+	intronic
CAediting_1416430	chr20_33999051_+	intronic
CAediting_1416431	chr20_33999075_+	intronic
CAediting_1416432	chr20_33999087_+	intronic
CAediting_1416433	chr20_34005327_+	intronic
CAediting_1416434	chr20_34005362_+	intronic
CAediting_1416435	chr20_34005458_+	intronic
CAediting_1416436	chr20_34007697_+	intronic
CAediting_1416437	chr20_34007709_+	intronic
CAediting_1416438	chr20_34008714_+	intronic
CAediting_1416439	chr20_34008752_+	intronic
CAediting_1416440	chr20_34008831_+	intronic
CAediting_1416441	chr20_34009308_+	intronic
CAediting_1416442	chr20_34010280_+	intronic
CAediting_1416443	chr20_34010298_+	intronic
CAediting_1416444	chr20_34010303_+	intronic
CAediting_1416445	chr20_34010315_+	intronic
CAediting_1416446	chr20_34010358_+	intronic
CAediting_1416447	chr20_34011880_+	intronic
CAediting_1416448	chr20_34011945_+	intronic
CAediting_1416449	chr20_34011972_+	intronic
CAediting_1416450	chr20_34011987_+	intronic
CAediting_1416451	chr20_34011991_+	intronic
CAediting_1416452	chr20_34012010_+	intronic
CAediting_1416453	chr20_34012011_+	intronic
CAediting_1416454	chr20_34013358_+	intronic
CAediting_1416455	chr20_34013359_+	intronic
CAediting_1416456	chr20_34013389_+	intronic
CAediting_1416457	chr20_34028067_+	intronic
CAediting_1416458	chr20_34028099_+	intronic
CAediting_1416459	chr20_34028100_+	intronic
CAediting_1416460	chr20_34028108_+	intronic
CAediting_1416461	chr20_34028109_+	intronic
CAediting_1416462	chr20_34028110_+	intronic
CAediting_1416463	chr20_34028139_+	intronic
CAediting_1416464	chr20_34028145_+	intronic
CAediting_1416465	chr20_34028155_+	intronic
CAediting_1416466	chr20_34028165_+	intronic
CAediting_1416467	chr20_34028166_+	intronic
CAediting_1416468	chr20_34028175_+	intronic
CAediting_1416469	chr20_34028211_+	intronic
CAediting_1416470	chr20_34029223_+	intronic
CAediting_1416471	chr20_34029251_+	intronic
CAediting_1416472	chr20_34029252_+	intronic
CAediting_1416473	chr20_34029254_+	intronic
CAediting_1416474	chr20_34029258_+	intronic
CAediting_1416475	chr20_34029316_+	intronic
CAediting_1416476	chr20_34029317_+	intronic
CAediting_1416477	chr20_34029330_+	intronic
CAediting_1416478	chr20_34031981_+	intronic
CAediting_1416479	chr20_34032024_+	intronic
CAediting_1416480	chr20_34032096_+	intronic
CAediting_1416481	chr20_34032143_+	intronic
CAediting_1416482	chr20_34032146_+	intronic
CAediting_1416483	chr20_34032237_+	intronic
CAediting_1416484	chr20_34032240_+	intronic
CAediting_1416485	chr20_34034889_+	intronic
CAediting_1416486	chr20_34034898_+	intronic
CAediting_1416487	chr20_34034903_+	intronic
CAediting_1416488	chr20_34034936_+	intronic
CAediting_1416489	chr20_34034941_+	intronic
CAediting_1416490	chr20_34034964_+	intronic
CAediting_1416491	chr20_34034967_+	intronic
CAediting_1416492	chr20_34034975_+	intronic
CAediting_1416493	chr20_34034996_+	intronic
CAediting_1416494	chr20_34035006_+	intronic
CAediting_1416495	chr20_34035032_+	intronic
CAediting_1416496	chr20_34035038_+	intronic
CAediting_1416497	chr20_34035042_+	intronic
CAediting_1416498	chr20_34035049_+	intronic
CAediting_1416499	chr20_34035059_+	intronic
CAediting_1416500	chr20_34035062_+	intronic
CAediting_1416501	chr20_34035073_+	intronic
CAediting_1416502	chr20_34035074_+	intronic
CAediting_1416503	chr20_34035085_+	intronic
CAediting_1416504	chr20_34035087_+	intronic
CAediting_1416505	chr20_34035113_+	intronic
CAediting_1416506	chr20_34039925_+	intronic
CAediting_1416507	chr20_34039991_+	intronic
CAediting_1416508	chr20_34041985_+	intronic
CAediting_1416509	chr20_34041990_+	intronic
CAediting_1416510	chr20_34044369_+	intronic
CAediting_1416511	chr20_34044377_+	intronic
CAediting_1416512	chr20_34045049_+	intronic
CAediting_1416513	chr20_34045101_+	intronic
CAediting_1416514	chr20_34045177_+	intronic
CAediting_1416515	chr20_34048777_+	intronic
CAediting_1416516	chr20_34048801_+	intronic
CAediting_1416517	chr20_34053472_+	intronic
CAediting_1416518	chr20_34053501_+	intronic
CAediting_1416519	chr20_34053527_+	intronic
CAediting_1416520	chr20_34053586_+	intronic
CAediting_1416521	chr20_34053665_+	intronic
CAediting_1416522	chr20_34054562_+	intronic
CAediting_1416523	chr20_34054570_+	intronic
CAediting_1416524	chr20_34054571_+	intronic
CAediting_1416525	chr20_34054576_+	intronic
CAediting_1416526	chr20_34054597_+	intronic
CAediting_1416527	chr20_34054606_+	intronic
CAediting_1416528	chr20_34054616_+	intronic
CAediting_1416529	chr20_34054670_+	intronic
CAediting_1416530	chr20_34054679_+	intronic
CAediting_1416531	chr20_34054683_+	intronic
CAediting_1416532	chr20_34054746_+	intronic
CAediting_1416533	chr20_34054747_+	intronic
CAediting_1416534	chr20_34055063_+	intronic
CAediting_1416535	chr20_34055066_+	intronic
CAediting_1416536	chr20_34066242_+	intronic
CAediting_1416537	chr20_34066251_+	intronic
CAediting_1416538	chr20_34073913_+	ncRNA_intronic
CAediting_1416539	chr20_34074005_+	ncRNA_intronic
CAediting_1416540	chr20_34074048_+	ncRNA_intronic
CAediting_1416541	chr20_34074057_+	ncRNA_intronic
CAediting_1416542	chr20_34074595_+	ncRNA_intronic
CAediting_1416543	chr20_34074601_+	ncRNA_intronic
CAediting_1416544	chr20_34074602_+	ncRNA_intronic
CAediting_1416545	chr20_34074610_+	ncRNA_intronic
CAediting_1416546	chr20_34074625_+	ncRNA_intronic
CAediting_1416547	chr20_34074631_+	ncRNA_intronic
CAediting_1416548	chr20_34074639_+	ncRNA_intronic
CAediting_1416549	chr20_34074658_+	ncRNA_intronic
CAediting_1416550	chr20_34077390_+	ncRNA_exonic
CAediting_1416551	chr20_34082375_+	ncRNA_intronic
CAediting_1416552	chr20_34084179_+	ncRNA_intronic
CAediting_1416553	chr20_34085071_+	ncRNA_intronic
CAediting_1416554	chr20_34085086_+	ncRNA_intronic
CAediting_1416555	chr20_34085095_+	ncRNA_intronic
CAediting_1416556	chr20_34085111_+	ncRNA_intronic
CAediting_1416557	chr20_34085112_+	ncRNA_intronic
CAediting_1416558	chr20_34085116_+	ncRNA_intronic
CAediting_1416559	chr20_34085120_+	ncRNA_intronic
CAediting_1416560	chr20_34085127_+	ncRNA_intronic
CAediting_1416561	chr20_34085153_+	ncRNA_intronic
CAediting_1416562	chr20_34085159_+	ncRNA_intronic
CAediting_1416563	chr20_34085180_+	ncRNA_intronic
CAediting_1416564	chr20_34086027_+	ncRNA_intronic
CAediting_1416565	chr20_34086047_+	ncRNA_intronic
CAediting_1416566	chr20_34086057_+	ncRNA_intronic
CAediting_1416567	chr20_34086059_+	ncRNA_intronic
CAediting_1416568	chr20_34086091_+	ncRNA_intronic
CAediting_1416569	chr20_34086098_+	ncRNA_intronic
CAediting_1416570	chr20_34086110_+	ncRNA_intronic
CAediting_1416571	chr20_34086127_+	ncRNA_intronic
CAediting_1416572	chr20_34086132_+	ncRNA_intronic
CAediting_1416573	chr20_34086136_+	ncRNA_intronic
CAediting_1416574	chr20_34086139_+	ncRNA_intronic
CAediting_1416575	chr20_34086164_+	ncRNA_intronic
CAediting_1416576	chr20_34086197_+	ncRNA_intronic
CAediting_1416577	chr20_34086200_+	ncRNA_intronic
CAediting_1416578	chr20_34086209_+	ncRNA_intronic
CAediting_1416579	chr20_34087196_+	ncRNA_intronic
CAediting_1416580	chr20_34087354_+	ncRNA_intronic
CAediting_1416581	chr20_34087355_+	ncRNA_intronic
CAediting_1416582	chr20_34087381_+	ncRNA_intronic
CAediting_1416583	chr20_34087648_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1416413	chr20_33997216_+	SINE	Alu	AluSx
CAediting_1416414	chr20_33997295_+	SINE	Alu	AluSx
CAediting_1416415	chr20_33997298_+	SINE	Alu	AluSx
CAediting_1416416	chr20_33998940_+	SINE	Alu	AluSx1
CAediting_1416417	chr20_33998941_+	SINE	Alu	AluSx1
CAediting_1416418	chr20_33998951_+	SINE	Alu	AluSx1
CAediting_1416419	chr20_33998975_+	SINE	Alu	AluSx1
CAediting_1416420	chr20_33998976_+	SINE	Alu	AluSx1
CAediting_1416421	chr20_33998977_+	SINE	Alu	AluSx1
CAediting_1416422	chr20_33998978_+	SINE	Alu	AluSx1
CAediting_1416423	chr20_33998999_+	SINE	Alu	AluSx1
CAediting_1416424	chr20_33999003_+	SINE	Alu	AluSx1
CAediting_1416425	chr20_33999009_+	SINE	Alu	AluSx1
CAediting_1416426	chr20_33999010_+	SINE	Alu	AluSx1
CAediting_1416427	chr20_33999032_+	SINE	Alu	AluSx1
CAediting_1416428	chr20_33999045_+	SINE	Alu	AluSx1
CAediting_1416429	chr20_33999050_+	SINE	Alu	AluSx1
CAediting_1416430	chr20_33999051_+	SINE	Alu	AluSx1
CAediting_1416431	chr20_33999075_+	SINE	Alu	AluSx1
CAediting_1416432	chr20_33999087_+	SINE	Alu	AluSx1
CAediting_1416433	chr20_34005327_+	SINE	Alu	AluSc5
CAediting_1416434	chr20_34005362_+	SINE	Alu	AluSc5
CAediting_1416435	chr20_34005458_+	SINE	Alu	AluSc5
CAediting_1416436	chr20_34007697_+	SINE	Alu	AluSq2
CAediting_1416437	chr20_34007709_+	SINE	Alu	AluSq2
CAediting_1416438	chr20_34008714_+	SINE	Alu	AluJr
CAediting_1416439	chr20_34008752_+	SINE	Alu	AluJr
CAediting_1416440	chr20_34008831_+	SINE	Alu	AluJr
CAediting_1416441	chr20_34009308_+	SINE	Alu	AluSx3
CAediting_1416442	chr20_34010280_+	SINE	Alu	AluJr
CAediting_1416443	chr20_34010298_+	SINE	Alu	AluJr
CAediting_1416444	chr20_34010303_+	SINE	Alu	AluJr
CAediting_1416445	chr20_34010315_+	SINE	Alu	AluJr
CAediting_1416446	chr20_34010358_+	SINE	Alu	AluJr
CAediting_1416447	chr20_34011880_+	SINE	Alu	AluSz
CAediting_1416448	chr20_34011945_+	SINE	Alu	AluSz
CAediting_1416449	chr20_34011972_+	SINE	Alu	AluSz
CAediting_1416450	chr20_34011987_+	SINE	Alu	AluSz
CAediting_1416451	chr20_34011991_+	SINE	Alu	AluSz
CAediting_1416452	chr20_34012010_+	SINE	Alu	AluSz
CAediting_1416453	chr20_34012011_+	SINE	Alu	AluSz
CAediting_1416454	chr20_34013358_+	SINE	Alu	AluJb
CAediting_1416455	chr20_34013359_+	SINE	Alu	AluJb
CAediting_1416456	chr20_34013389_+	SINE	Alu	AluJb
CAediting_1416457	chr20_34028067_+	SINE	Alu	AluSz
CAediting_1416458	chr20_34028099_+	SINE	Alu	AluSz
CAediting_1416459	chr20_34028100_+	SINE	Alu	AluSz
CAediting_1416460	chr20_34028108_+	SINE	Alu	AluSz
CAediting_1416461	chr20_34028109_+	SINE	Alu	AluSz
CAediting_1416462	chr20_34028110_+	SINE	Alu	AluSz
CAediting_1416463	chr20_34028139_+	SINE	Alu	AluSz
CAediting_1416464	chr20_34028145_+	SINE	Alu	AluSz
CAediting_1416465	chr20_34028155_+	SINE	Alu	AluSz
CAediting_1416466	chr20_34028165_+	SINE	Alu	AluSz
CAediting_1416467	chr20_34028166_+	SINE	Alu	AluSz
CAediting_1416468	chr20_34028175_+	SINE	Alu	AluSz
CAediting_1416469	chr20_34028211_+	SINE	Alu	AluSz
CAediting_1416470	chr20_34029223_+	SINE	Alu	AluSx1
CAediting_1416471	chr20_34029251_+	SINE	Alu	AluSx1
CAediting_1416472	chr20_34029252_+	SINE	Alu	AluSx1
CAediting_1416473	chr20_34029254_+	SINE	Alu	AluSx1
CAediting_1416474	chr20_34029258_+	SINE	Alu	AluSx1
CAediting_1416475	chr20_34029316_+	SINE	Alu	AluSx1
CAediting_1416476	chr20_34029317_+	SINE	Alu	AluSx1
CAediting_1416477	chr20_34029330_+	SINE	Alu	AluSx1
CAediting_1416478	chr20_34031981_+	SINE	Alu	AluSp
CAediting_1416479	chr20_34032024_+	SINE	Alu	AluSp
CAediting_1416480	chr20_34032096_+	SINE	Alu	AluSp
CAediting_1416481	chr20_34032143_+	SINE	Alu	AluSp
CAediting_1416482	chr20_34032146_+	SINE	Alu	AluSp
CAediting_1416483	chr20_34032237_+	SINE	Alu	AluSp
CAediting_1416484	chr20_34032240_+	SINE	Alu	AluSp
CAediting_1416485	chr20_34034889_+	SINE	Alu	AluY
CAediting_1416486	chr20_34034898_+	SINE	Alu	AluY
CAediting_1416487	chr20_34034903_+	SINE	Alu	AluY
CAediting_1416488	chr20_34034936_+	SINE	Alu	AluY
CAediting_1416489	chr20_34034941_+	SINE	Alu	AluY
CAediting_1416490	chr20_34034964_+	SINE	Alu	AluY
CAediting_1416491	chr20_34034967_+	SINE	Alu	AluY
CAediting_1416492	chr20_34034975_+	SINE	Alu	AluY
CAediting_1416493	chr20_34034996_+	SINE	Alu	AluY
CAediting_1416494	chr20_34035006_+	SINE	Alu	AluY
CAediting_1416495	chr20_34035032_+	SINE	Alu	AluY
CAediting_1416496	chr20_34035038_+	SINE	Alu	AluY
CAediting_1416497	chr20_34035042_+	SINE	Alu	AluY
CAediting_1416498	chr20_34035049_+	SINE	Alu	AluY
CAediting_1416499	chr20_34035059_+	SINE	Alu	AluY
CAediting_1416500	chr20_34035062_+	SINE	Alu	AluY
CAediting_1416501	chr20_34035073_+	SINE	Alu	AluY
CAediting_1416502	chr20_34035074_+	SINE	Alu	AluY
CAediting_1416503	chr20_34035085_+	SINE	Alu	AluY
CAediting_1416504	chr20_34035087_+	SINE	Alu	AluY
CAediting_1416505	chr20_34035113_+	SINE	Alu	AluY
CAediting_1416506	chr20_34039925_+	SINE	Alu	AluSc
CAediting_1416507	chr20_34039991_+	SINE	Alu	AluSc
CAediting_1416508	chr20_34041985_+	SINE	Alu	AluSz
CAediting_1416509	chr20_34041990_+	SINE	Alu	AluSz
CAediting_1416510	chr20_34044369_+	SINE	Alu	AluSp
CAediting_1416511	chr20_34044377_+	SINE	Alu	AluSp
CAediting_1416512	chr20_34045049_+	SINE	Alu	AluJo
CAediting_1416513	chr20_34045101_+	SINE	Alu	AluJo
CAediting_1416514	chr20_34045177_+	SINE	Alu	AluJo
CAediting_1416515	chr20_34048777_+	SINE	Alu	AluY
CAediting_1416516	chr20_34048801_+	SINE	Alu	AluY
CAediting_1416517	chr20_34053472_+	SINE	Alu	AluJr
CAediting_1416518	chr20_34053501_+	SINE	Alu	AluJr
CAediting_1416519	chr20_34053527_+	SINE	Alu	AluJr
CAediting_1416520	chr20_34053586_+	SINE	Alu	AluJr
CAediting_1416521	chr20_34053665_+	SINE	Alu	AluJr
CAediting_1416522	chr20_34054562_+	SINE	Alu	AluSz
CAediting_1416523	chr20_34054570_+	SINE	Alu	AluSz
CAediting_1416524	chr20_34054571_+	SINE	Alu	AluSz
CAediting_1416525	chr20_34054576_+	SINE	Alu	AluSz
CAediting_1416526	chr20_34054597_+	SINE	Alu	AluSz
CAediting_1416527	chr20_34054606_+	SINE	Alu	AluSz
CAediting_1416528	chr20_34054616_+	SINE	Alu	AluSz
CAediting_1416529	chr20_34054670_+	SINE	Alu	AluSz
CAediting_1416530	chr20_34054679_+	SINE	Alu	AluSz
CAediting_1416531	chr20_34054683_+	SINE	Alu	AluSz
CAediting_1416532	chr20_34054746_+	SINE	Alu	AluSz
CAediting_1416533	chr20_34054747_+	SINE	Alu	AluSz
CAediting_1416534	chr20_34055063_+	SINE	MIR	MIR
CAediting_1416535	chr20_34055066_+	SINE	MIR	MIR
CAediting_1416536	chr20_34066242_+	SINE	Alu	AluSx4
CAediting_1416537	chr20_34066251_+	SINE	Alu	AluSx4
CAediting_1416538	chr20_34073913_+	SINE	MIR	MIR3
CAediting_1416539	chr20_34074005_+	SINE	MIR	MIR3
CAediting_1416540	chr20_34074048_+	SINE	MIR	MIR3
CAediting_1416541	chr20_34074057_+	SINE	MIR	MIR3
CAediting_1416542	chr20_34074595_+	SINE	MIR	MIRc
CAediting_1416543	chr20_34074601_+	SINE	MIR	MIRc
CAediting_1416544	chr20_34074602_+	SINE	MIR	MIRc
CAediting_1416545	chr20_34074610_+	SINE	MIR	MIRc
CAediting_1416546	chr20_34074625_+	SINE	MIR	MIRc
CAediting_1416547	chr20_34074631_+	SINE	MIR	MIRc
CAediting_1416548	chr20_34074639_+	SINE	MIR	MIRc
CAediting_1416549	chr20_34074658_+	SINE	MIR	MIRc
CAediting_1416552	chr20_34084179_+	SINE	Alu	AluJb
CAediting_1416553	chr20_34085071_+	SINE	Alu	AluY
CAediting_1416554	chr20_34085086_+	SINE	Alu	AluY
CAediting_1416555	chr20_34085095_+	SINE	Alu	AluY
CAediting_1416556	chr20_34085111_+	SINE	Alu	AluY
CAediting_1416557	chr20_34085112_+	SINE	Alu	AluY
CAediting_1416558	chr20_34085116_+	SINE	Alu	AluY
CAediting_1416559	chr20_34085120_+	SINE	Alu	AluY
CAediting_1416560	chr20_34085127_+	SINE	Alu	AluY
CAediting_1416561	chr20_34085153_+	SINE	Alu	AluY
CAediting_1416562	chr20_34085159_+	SINE	Alu	AluY
CAediting_1416563	chr20_34085180_+	SINE	Alu	AluY
CAediting_1416564	chr20_34086027_+	SINE	Alu	AluJb
CAediting_1416565	chr20_34086047_+	SINE	Alu	AluJb
CAediting_1416566	chr20_34086057_+	SINE	Alu	AluJb
CAediting_1416567	chr20_34086059_+	SINE	Alu	AluJb
CAediting_1416568	chr20_34086091_+	SINE	Alu	AluJb
CAediting_1416569	chr20_34086098_+	SINE	Alu	AluJb
CAediting_1416570	chr20_34086110_+	SINE	Alu	AluJb
CAediting_1416571	chr20_34086127_+	SINE	Alu	AluJb
CAediting_1416572	chr20_34086132_+	SINE	Alu	AluJb
CAediting_1416573	chr20_34086136_+	SINE	Alu	AluJb
CAediting_1416574	chr20_34086139_+	SINE	Alu	AluJb
CAediting_1416575	chr20_34086164_+	SINE	Alu	AluJb
CAediting_1416576	chr20_34086197_+	SINE	Alu	AluJb
CAediting_1416577	chr20_34086200_+	SINE	Alu	AluJb
CAediting_1416578	chr20_34086209_+	SINE	Alu	AluJb
CAediting_1416579	chr20_34087196_+	SINE	Alu	AluSx1
CAediting_1416580	chr20_34087354_+	SINE	Alu	AluSx1
CAediting_1416581	chr20_34087355_+	SINE	Alu	AluSx1
CAediting_1416582	chr20_34087381_+	SINE	Alu	AluSx1
CAediting_1416583	chr20_34087648_+	SINE	Alu	AluSx3

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RNA A-to-I editing events in the alternative splicing sites for RALY

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000125970.10.RALY.

Correlation between RNA A-to-I editing and PSI for ENSG00000125970.10.RALY.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for RALY

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for RALY

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for RALY

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1416551	chr20_34082375_+	ENSG00000125970.10	ENST00000375114	hsa-miR-1825	34082369	34082375	7mer-m8	34082359	34082376	140.00	-15.53

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1416551	chr20_34082375_+	ENSG00000125970.10	ENST00000375114	hsa-miR-1271-3p	34082374	34082379	6mer	34082355	34082380	143	-26.67
CAediting_1416551	chr20_34082375_+	ENSG00000125970.10	ENST00000375114	hsa-miR-4473	34082368	34082374	7mer-m8	34082354	34082375	142	-15.16
CAediting_1416552	chr20_34084179_+	ENSG00000125970.10	ENST00000375114	hsa-miR-4794	34084173	34084179	7mer-m8	34084159	34084180	143	-16.46
CAediting_1416551	chr20_34082375_+	ENSG00000125970.10	ENST00000375114	hsa-miR-6080	34082369	34082375	7mer-m8	34082358	34082376	149	-19.62
CAediting_1416552	chr20_34084179_+	ENSG00000125970.10	ENST00000375114	hsa-miR-664a-5p	34084173	34084179	7mer-m8	34084154	34084180	147	-21.48

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1054808	chr15_66496985_-	ENSG00000125970.10	ENST00000375114	hsa-miR-4512	34082007	34082013	7mer-m8	34081995	34082014	149	-25.45
CAediting_1229414	chr17_67471546_+	ENSG00000125970.10	ENST00000375114	hsa-miR-548aa	34080528	34080534	7mer-m8	34080511	34080535	154	-12.98
CAediting_1306323	chr19_13836462_-	ENSG00000125970.10	ENST00000375114	hsa-miR-27a-3p	34082523	34082529	7mer-m8	34082509	34082530	148	-22.54
CAediting_1368054	chr19_46709310_-	ENSG00000125970.10	ENST00000375114	hsa-miR-320e	34080537	34080543	7mer-m8	34080528	34080544	149	-21.18
CAediting_1399425	chr20_1392958_-	ENSG00000125970.10	ENST00000375114	hsa-miR-6869-5p	34082418	34082425	8mer-1a	34082405	34082425	158	-29.23
CAediting_228905	chr2_188297554_+	ENSG00000125970.10	ENST00000375114	hsa-miR-561-3p	34084552	34084558	7mer-m8	34084539	34084559	151	-14.96
CAediting_396018	chr5_1062918_-	ENSG00000125970.10	ENST00000375114	hsa-miR-4635	34079959	34079965	7mer-m8	34079946	34079966	151	-15.34
CAediting_414656	chr5_72878640_+	ENSG00000125970.10	ENST00000375114	hsa-miR-4804-3p	34080454	34080461	8mer-1a	34080438	34080461	153	-20.35
CAediting_524911	chr7_5495852_-	ENSG00000125970.10	ENST00000375114	hsa-miR-589-3p	34084590	34084596	7mer-m8	34084572	34084597	142	-18.14
CAediting_468389	chr6_31355314_-	ENSG00000125970.10	ENST00000375114	hsa-miR-6891-5p	34080028	34080034	7mer-m8	34080017	34080035	146	-19.53
CAediting_1524209	chrX_134546392_-	ENSG00000125970.10	ENST00000375114	hsa-miR-503-5p	34079947	34079953	7mer-m8	34079930	34079954	144	-24.27

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000125970.10	ENST00000375114	hsa-miR-320e	34080514	34080520	7mer-m8	34080504	34080521	155	-19.04
CAediting_604450	chr7_133034877_-	ENSG00000125970.10	ENST00000375114	hsa-miR-3654	34081202	34081208	7mer-m8	34081191	34081209	153	-17.87
CAediting_77128	chr1_85133844_+	ENSG00000125970.10	ENST00000375114	hsa-miR-4423-3p	34080339	34080346	8mer-1a	34080326	34080346	155	-17.27
CAediting_396018	chr5_1062918_-	ENSG00000125970.10	ENST00000375114	hsa-miR-4635	34082548	34082554	7mer-m8	34082535	34082555	140	-16.33
CAediting_396018	chr5_1062918_-	ENSG00000125970.10	ENST00000375114	hsa-miR-4635	34084769	34084776	8mer-1a	34084756	34084776	146	-15.96
CAediting_1524209	chrX_134546392_-	ENSG00000125970.10	ENST00000375114	hsa-miR-503-5p	34081361	34081366	6mer	34081349	34081370	142	-25.37
CAediting_1524209	chrX_134546392_-	ENSG00000125970.10	ENST00000375114	hsa-miR-503-5p	34081364	34081369	6mer	34081349	34081370	142	-25.37
CAediting_1229413	chr17_67471544_+	ENSG00000125970.10	ENST00000375114	hsa-miR-548aa	34083849	34083855	7mer-m8	34083832	34083856	141	-9.72
CAediting_1229414	chr17_67471546_+	ENSG00000125970.10	ENST00000375114	hsa-miR-548aa	34083849	34083855	7mer-m8	34083832	34083856	141	-9.72
CAediting_1229415	chr17_67471547_+	ENSG00000125970.10	ENST00000375114	hsa-miR-548aa	34083849	34083855	7mer-m8	34083832	34083856	141	-9.72
CAediting_1229413	chr17_67471544_+	ENSG00000125970.10	ENST00000375114	hsa-miR-548aa	34084334	34084340	7mer-m8	34084319	34084341	154	-10.21
CAediting_1229414	chr17_67471546_+	ENSG00000125970.10	ENST00000375114	hsa-miR-548aa	34084334	34084340	7mer-m8	34084319	34084341	154	-10.21
CAediting_1229415	chr17_67471547_+	ENSG00000125970.10	ENST00000375114	hsa-miR-548aa	34084334	34084340	7mer-m8	34084319	34084341	154	-10.21
CAediting_524911	chr7_5495852_-	ENSG00000125970.10	ENST00000375114	hsa-miR-589-3p	34080263	34080270	8mer-1a	34080248	34080270	148	-17.21
CAediting_1399425	chr20_1392958_-	ENSG00000125970.10	ENST00000375114	hsa-miR-6869-5p	34082572	34082578	7mer-m8	34082556	34082579	144	-19.87

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for RALY

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for RALY

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BLCA	CAediting_1416538	chr20_34073913_+	0.00618758786258248	0.374809840026318	.	.	.	.
BRCA	CAediting_1416538	chr20_34073913_+	4.00793048210115e-08	0.509037404959791	.	.	.	.
LUAD	CAediting_1416538	chr20_34073913_+	3.17218124178059e-05	0.405230657631921	.	.	.	.
COAD	CAediting_1416538	chr20_34073913_+	0.0287523744530783	0.261521960417168	.	.	.	.
LUSC	CAediting_1416538	chr20_34073913_+	1.72082905406013e-06	0.429004167294243	.	.	.	.
STAD	CAediting_1416538	chr20_34073913_+	0.000663893471181824	0.281359166631032	.	.	.	.
THCA	CAediting_1416538	chr20_34073913_+	0.0312995149802079	0.252280664944161	.	.	.	.
KIRC	CAediting_1416538	chr20_34073913_+	.	.	.	.	0.0367928350750966	0.215710219268301
OV	CAediting_1416538	chr20_34073913_+	0.00235393816460258	0.306914888333173	.	.	.	.
BRCA	CAediting_1416539	chr20_34074005_+	0.00784935217640104	0.348721844671918	.	.	.	.

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Relation with cancer stages for RALY

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
KIRC	pathologic_stage	CAediting_1416538	chr20_34073913_+	0.0196535476384863	0.240298047592857

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Relation with survival for RALY

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for RALY

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for RALY

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
RALY	C0236733	Amphetamine-Related Disorders	1	CTD_human
RALY	C0236804	Amphetamine Addiction	1	CTD_human
RALY	C0236807	Amphetamine Abuse	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene