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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

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Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: COBLL1 (CAeditome ID:22837)

Gene summary for COBLL1

check button Gene summary
Gene informationGene symbol

COBLL1

Gene ID

22837

Gene namecordon-bleu WH2 repeat protein like 1
SynonymsCOBLR1
Cytomap

2q24.3

Type of geneprotein-coding
Descriptioncordon-bleu protein-like 1COBL-like 1
Modification date20210518
UniProtAcc

Q53SF7

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for COBLL1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000082438.14
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_221859(164673440, -), CAediting_221860(164673502, -), CAediting_221861(164673592, -), CAediting_221862(164673593, -), CAediting_221863(164674255, -), CAediting_221864(164680688, -), CAediting_221865(164680699, -), CAediting_221866(164680743, -), CAediting_221867(164680745, -), CAediting_221868(164680748, -), CAediting_221869(164680749, -), CAediting_221870(164680772, -), CAediting_221871(164680782, -), CAediting_221872(164680788, -), CAediting_221873(164680789, -), CAediting_221874(164680790, -), CAediting_221875(164680794, -), CAediting_221876(164680803, -), CAediting_221877(164680805, -), CAediting_221878(164680807, -), CAediting_221879(164680808, -), CAediting_221880(164680809, -), CAediting_221881(164680810, -), CAediting_221882(164680814, -), CAediting_221883(164680840, -), CAediting_221884(164680848, -), CAediting_221885(164702725, -), CAediting_221886(164702766, -), CAediting_221887(164702773, -), CAediting_221888(164702801, -), CAediting_221889(164702820, -), CAediting_221890(164702821, -), CAediting_221891(164705804, -), CAediting_221892(164705817, -), CAediting_221893(164705842, -), CAediting_221894(164705868, -), CAediting_221895(164705871, -), CAediting_221896(164705912, -), CAediting_221897(164705925, -), CAediting_221898(164705934, -), CAediting_221899(164705947, -), CAediting_221900(164705951, -), CAediting_221901(164706021, -), CAediting_221902(164706033, -), CAediting_221903(164707177, -), CAediting_221904(164707185, -), CAediting_221905(164707237, -), CAediting_221906(164707238, -), CAediting_221907(164707243, -), CAediting_221908(164707246, -), CAediting_221909(164707262, -), CAediting_221910(164707265, -), CAediting_221911(164707278, -), CAediting_221912(164707309, -), CAediting_221913(164707319, -), CAediting_221914(164707323, -), CAediting_221915(164707413, -), CAediting_221916(164707414, -), CAediting_221917(164709459, -), CAediting_221918(164709530, -), CAediting_221919(164709552, -), CAediting_221920(164709555, -), CAediting_221921(164709594, -), CAediting_221922(164709596, -), CAediting_221923(164709606, -), CAediting_221924(164709618, -), CAediting_221925(164709635, -), CAediting_221926(164709671, -), CAediting_221927(164709704, -), CAediting_221928(164710728, -), CAediting_221929(164710738, -), CAediting_221930(164710768, -), CAediting_221931(164710835, -), CAediting_221932(164717614, -), CAediting_221933(164717678, -), CAediting_221934(164717783, -), CAediting_221935(164717811, -), CAediting_221936(164717840, -), CAediting_221937(164724049, -), CAediting_221938(164753802, -), CAediting_221939(164753863, -), CAediting_221940(164753866, -), CAediting_221941(164753870, -), CAediting_221942(164753992, -), CAediting_221943(164761292, -), CAediting_221944(164761325, -), CAediting_221945(164761326, -), CAediting_221946(164761332, -), CAediting_221947(164761369, -), CAediting_221948(164762825, -), CAediting_221949(164762829, -), CAediting_221950(164763959, -), CAediting_221951(164764024, -), CAediting_221952(164792293, -), CAediting_221953(164805730, -), CAediting_221954(164806735, -), CAediting_221955(164806778, -), CAediting_221956(164806808, -), CAediting_221957(164807356, -), CAediting_221958(164808013, -), CAediting_221959(164808087, -), CAediting_221960(164808093, -), CAediting_221961(164815182, -), CAediting_221962(164815197, -), CAediting_221963(164818187, -), CAediting_221964(164818866, -), CAediting_221965(164818894, -), CAediting_221966(164818990, -), CAediting_221967(164819922, -), CAediting_221968(164819923, -), CAediting_221969(164820317, -), CAediting_221970(164820352, -), CAediting_221971(164820358, -), CAediting_221972(164824269, -), CAediting_221973(164824272, -), CAediting_221974(164824319, -), CAediting_221975(164824367, -), CAediting_221976(164827102, -), CAediting_221977(164831126, -), CAediting_221978(164831210, -), CAediting_221979(164832942, -), CAediting_221980(164832948, -), CAediting_221981(164833165, -), CAediting_221982(164833254, -), CAediting_221983(164833615, -), CAediting_221984(164839419, -),

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RNA editing positional annotations for COBLL1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_221859chr2_164673440_-ncRNA_intronic
CAediting_221860chr2_164673502_-ncRNA_intronic
CAediting_221861chr2_164673592_-ncRNA_intronic
CAediting_221862chr2_164673593_-ncRNA_intronic
CAediting_221863chr2_164674255_-ncRNA_intronic
CAediting_221864chr2_164680688_-ncRNA_intronic
CAediting_221865chr2_164680699_-ncRNA_intronic
CAediting_221866chr2_164680743_-ncRNA_intronic
CAediting_221867chr2_164680745_-ncRNA_intronic
CAediting_221868chr2_164680748_-ncRNA_intronic
CAediting_221869chr2_164680749_-ncRNA_intronic
CAediting_221870chr2_164680772_-ncRNA_intronic
CAediting_221871chr2_164680782_-ncRNA_intronic
CAediting_221872chr2_164680788_-ncRNA_intronic
CAediting_221873chr2_164680789_-ncRNA_intronic
CAediting_221874chr2_164680790_-ncRNA_intronic
CAediting_221875chr2_164680794_-ncRNA_intronic
CAediting_221876chr2_164680803_-ncRNA_intronic
CAediting_221877chr2_164680805_-ncRNA_intronic
CAediting_221878chr2_164680807_-ncRNA_intronic
CAediting_221879chr2_164680808_-ncRNA_intronic
CAediting_221880chr2_164680809_-ncRNA_intronic
CAediting_221881chr2_164680810_-ncRNA_intronic
CAediting_221882chr2_164680814_-ncRNA_intronic
CAediting_221883chr2_164680840_-ncRNA_intronic
CAediting_221884chr2_164680848_-ncRNA_intronic
CAediting_221885chr2_164702725_-ncRNA_intronic
CAediting_221886chr2_164702766_-ncRNA_intronic
CAediting_221887chr2_164702773_-ncRNA_intronic
CAediting_221888chr2_164702801_-ncRNA_intronic
CAediting_221889chr2_164702820_-ncRNA_intronic
CAediting_221890chr2_164702821_-ncRNA_intronic
CAediting_221891chr2_164705804_-ncRNA_intronic
CAediting_221892chr2_164705817_-ncRNA_intronic
CAediting_221893chr2_164705842_-ncRNA_intronic
CAediting_221894chr2_164705868_-ncRNA_intronic
CAediting_221895chr2_164705871_-ncRNA_intronic
CAediting_221896chr2_164705912_-ncRNA_intronic
CAediting_221897chr2_164705925_-ncRNA_intronic
CAediting_221898chr2_164705934_-ncRNA_intronic
CAediting_221899chr2_164705947_-ncRNA_intronic
CAediting_221900chr2_164705951_-ncRNA_intronic
CAediting_221901chr2_164706021_-ncRNA_intronic
CAediting_221902chr2_164706033_-ncRNA_intronic
CAediting_221903chr2_164707177_-ncRNA_intronic
CAediting_221904chr2_164707185_-ncRNA_intronic
CAediting_221905chr2_164707237_-ncRNA_intronic
CAediting_221906chr2_164707238_-ncRNA_intronic
CAediting_221907chr2_164707243_-ncRNA_intronic
CAediting_221908chr2_164707246_-ncRNA_intronic
CAediting_221909chr2_164707262_-ncRNA_intronic
CAediting_221910chr2_164707265_-ncRNA_intronic
CAediting_221911chr2_164707278_-ncRNA_intronic
CAediting_221912chr2_164707309_-ncRNA_intronic
CAediting_221913chr2_164707319_-ncRNA_intronic
CAediting_221914chr2_164707323_-ncRNA_intronic
CAediting_221915chr2_164707413_-ncRNA_intronic
CAediting_221916chr2_164707414_-ncRNA_intronic
CAediting_221917chr2_164709459_-ncRNA_intronic
CAediting_221918chr2_164709530_-ncRNA_intronic
CAediting_221919chr2_164709552_-ncRNA_intronic
CAediting_221920chr2_164709555_-ncRNA_intronic
CAediting_221921chr2_164709594_-ncRNA_intronic
CAediting_221922chr2_164709596_-ncRNA_intronic
CAediting_221923chr2_164709606_-ncRNA_intronic
CAediting_221924chr2_164709618_-ncRNA_intronic
CAediting_221925chr2_164709635_-ncRNA_intronic
CAediting_221926chr2_164709671_-ncRNA_intronic
CAediting_221927chr2_164709704_-ncRNA_intronic
CAediting_221928chr2_164710728_-ncRNA_intronic
CAediting_221929chr2_164710738_-ncRNA_intronic
CAediting_221930chr2_164710768_-ncRNA_intronic
CAediting_221931chr2_164710835_-ncRNA_intronic
CAediting_221932chr2_164717614_-ncRNA_intronic
CAediting_221933chr2_164717678_-ncRNA_intronic
CAediting_221934chr2_164717783_-ncRNA_intronic
CAediting_221935chr2_164717811_-ncRNA_intronic
CAediting_221936chr2_164717840_-ncRNA_intronic
CAediting_221937chr2_164724049_-ncRNA_exonic
CAediting_221938chr2_164753802_-ncRNA_intronic
CAediting_221939chr2_164753863_-ncRNA_intronic
CAediting_221940chr2_164753866_-ncRNA_intronic
CAediting_221941chr2_164753870_-ncRNA_intronic
CAediting_221942chr2_164753992_-ncRNA_intronic
CAediting_221943chr2_164761292_-ncRNA_exonic
CAediting_221944chr2_164761325_-ncRNA_exonic
CAediting_221945chr2_164761326_-ncRNA_exonic
CAediting_221946chr2_164761332_-ncRNA_exonic
CAediting_221947chr2_164761369_-ncRNA_exonic
CAediting_221948chr2_164762825_-ncRNA_intronic
CAediting_221949chr2_164762829_-ncRNA_intronic
CAediting_221950chr2_164763959_-ncRNA_intronic
CAediting_221951chr2_164764024_-ncRNA_intronic
CAediting_221952chr2_164792293_-ncRNA_intronic
CAediting_221953chr2_164805730_-ncRNA_intronic
CAediting_221954chr2_164806735_-ncRNA_intronic
CAediting_221955chr2_164806778_-ncRNA_intronic
CAediting_221956chr2_164806808_-ncRNA_intronic
CAediting_221957chr2_164807356_-ncRNA_intronic
CAediting_221958chr2_164808013_-ncRNA_intronic
CAediting_221959chr2_164808087_-ncRNA_intronic
CAediting_221960chr2_164808093_-ncRNA_intronic
CAediting_221961chr2_164815182_-ncRNA_intronic
CAediting_221962chr2_164815197_-ncRNA_intronic
CAediting_221963chr2_164818187_-ncRNA_intronic
CAediting_221964chr2_164818866_-ncRNA_intronic
CAediting_221965chr2_164818894_-ncRNA_intronic
CAediting_221966chr2_164818990_-ncRNA_intronic
CAediting_221967chr2_164819922_-ncRNA_intronic
CAediting_221968chr2_164819923_-ncRNA_intronic
CAediting_221969chr2_164820317_-ncRNA_intronic
CAediting_221970chr2_164820352_-ncRNA_intronic
CAediting_221971chr2_164820358_-ncRNA_intronic
CAediting_221972chr2_164824269_-ncRNA_intronic
CAediting_221973chr2_164824272_-ncRNA_intronic
CAediting_221974chr2_164824319_-ncRNA_intronic
CAediting_221975chr2_164824367_-ncRNA_intronic
CAediting_221976chr2_164827102_-ncRNA_intronic
CAediting_221977chr2_164831126_-ncRNA_intronic
CAediting_221978chr2_164831210_-ncRNA_intronic
CAediting_221979chr2_164832942_-ncRNA_intronic
CAediting_221980chr2_164832948_-ncRNA_intronic
CAediting_221981chr2_164833165_-ncRNA_intronic
CAediting_221982chr2_164833254_-ncRNA_intronic
CAediting_221983chr2_164833615_-ncRNA_intronic
CAediting_221984chr2_164839419_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_221859chr2_164673440_-SINEAluAluSz
CAediting_221860chr2_164673502_-SINEAluAluSz
CAediting_221861chr2_164673592_-SINEAluAluSz
CAediting_221862chr2_164673593_-SINEAluAluSz
CAediting_221863chr2_164674255_-SINEAluAluSc
CAediting_221864chr2_164680688_-DNAhAT-BlackjackMER53
CAediting_221865chr2_164680699_-DNAhAT-BlackjackMER53
CAediting_221866chr2_164680743_-DNAhAT-BlackjackMER53
CAediting_221867chr2_164680745_-DNAhAT-BlackjackMER53
CAediting_221868chr2_164680748_-DNAhAT-BlackjackMER53
CAediting_221869chr2_164680749_-DNAhAT-BlackjackMER53
CAediting_221870chr2_164680772_-DNAhAT-BlackjackMER53
CAediting_221871chr2_164680782_-DNAhAT-BlackjackMER53
CAediting_221872chr2_164680788_-DNAhAT-BlackjackMER53
CAediting_221873chr2_164680789_-DNAhAT-BlackjackMER53
CAediting_221874chr2_164680790_-DNAhAT-BlackjackMER53
CAediting_221875chr2_164680794_-DNAhAT-BlackjackMER53
CAediting_221876chr2_164680803_-DNAhAT-BlackjackMER53
CAediting_221877chr2_164680805_-DNAhAT-BlackjackMER53
CAediting_221878chr2_164680807_-DNAhAT-BlackjackMER53
CAediting_221879chr2_164680808_-DNAhAT-BlackjackMER53
CAediting_221880chr2_164680809_-DNAhAT-BlackjackMER53
CAediting_221881chr2_164680810_-DNAhAT-BlackjackMER53
CAediting_221882chr2_164680814_-DNAhAT-BlackjackMER53
CAediting_221885chr2_164702725_-SINEAluAluJo
CAediting_221886chr2_164702766_-SINEAluAluJo
CAediting_221887chr2_164702773_-SINEAluAluJo
CAediting_221888chr2_164702801_-SINEAluAluJo
CAediting_221891chr2_164705804_-SINEAluAluSq2
CAediting_221892chr2_164705817_-SINEAluAluSq2
CAediting_221893chr2_164705842_-SINEAluAluSq2
CAediting_221894chr2_164705868_-SINEAluAluSq2
CAediting_221895chr2_164705871_-SINEAluAluSq2
CAediting_221896chr2_164705912_-SINEAluAluSq2
CAediting_221897chr2_164705925_-SINEAluAluSq2
CAediting_221898chr2_164705934_-SINEAluAluSq2
CAediting_221899chr2_164705947_-SINEAluAluSq2
CAediting_221900chr2_164705951_-SINEAluAluSq2
CAediting_221901chr2_164706021_-SINEAluAluSq2
CAediting_221902chr2_164706033_-SINEAluAluSq2
CAediting_221903chr2_164707177_-SINEAluAluSz
CAediting_221904chr2_164707185_-SINEAluAluSz
CAediting_221905chr2_164707237_-SINEAluAluSz
CAediting_221906chr2_164707238_-SINEAluAluSz
CAediting_221907chr2_164707243_-SINEAluAluSz
CAediting_221908chr2_164707246_-SINEAluAluSz
CAediting_221909chr2_164707262_-SINEAluAluSz
CAediting_221910chr2_164707265_-SINEAluAluSz
CAediting_221911chr2_164707278_-SINEAluAluSz
CAediting_221912chr2_164707309_-SINEAluAluSz
CAediting_221913chr2_164707319_-SINEAluAluSz
CAediting_221914chr2_164707323_-SINEAluAluSz
CAediting_221915chr2_164707413_-SINEAluAluSz
CAediting_221916chr2_164707414_-SINEAluAluSz
CAediting_221917chr2_164709459_-SINEAluAluSq
CAediting_221918chr2_164709530_-SINEAluAluSq
CAediting_221919chr2_164709552_-SINEAluAluSq
CAediting_221920chr2_164709555_-SINEAluAluSq
CAediting_221921chr2_164709594_-SINEAluAluSq
CAediting_221922chr2_164709596_-SINEAluAluSq
CAediting_221923chr2_164709606_-SINEAluAluSq
CAediting_221924chr2_164709618_-SINEAluAluSq
CAediting_221925chr2_164709635_-SINEAluAluSq
CAediting_221926chr2_164709671_-SINEAluAluSq
CAediting_221927chr2_164709704_-SINEAluAluSq
CAediting_221928chr2_164710728_-SINEAluAluSg7
CAediting_221929chr2_164710738_-SINEAluAluSg7
CAediting_221930chr2_164710768_-SINEAluAluSg7
CAediting_221931chr2_164710835_-SINEAluAluSg7
CAediting_221932chr2_164717614_-SINEAluAluJr
CAediting_221933chr2_164717678_-SINEAluAluJr
CAediting_221934chr2_164717783_-SINEAluAluJr
CAediting_221935chr2_164717811_-SINEAluAluJr
CAediting_221936chr2_164717840_-SINEAluAluJr
CAediting_221937chr2_164724049_-SINEAluAluSx
CAediting_221938chr2_164753802_-SINEAluAluSz6
CAediting_221939chr2_164753863_-SINEAluAluSz6
CAediting_221940chr2_164753866_-SINEAluAluSz6
CAediting_221941chr2_164753870_-SINEAluAluSz6
CAediting_221942chr2_164753992_-SINEAluAluSz6
CAediting_221943chr2_164761292_-SINEAluAluSp
CAediting_221944chr2_164761325_-SINEAluAluSp
CAediting_221945chr2_164761326_-SINEAluAluSp
CAediting_221946chr2_164761332_-SINEAluAluSp
CAediting_221947chr2_164761369_-SINEAluAluSp
CAediting_221948chr2_164762825_-SINEAluAluYm1
CAediting_221949chr2_164762829_-SINEAluAluYm1
CAediting_221950chr2_164763959_-SINEAluAluJr
CAediting_221951chr2_164764024_-SINEAluAluJr
CAediting_221952chr2_164792293_-SINEAluAluJo
CAediting_221953chr2_164805730_-LINEL1L1MC2
CAediting_221954chr2_164806735_-SINEAluAluJb
CAediting_221955chr2_164806778_-SINEAluAluJb
CAediting_221956chr2_164806808_-SINEAluAluJb
CAediting_221957chr2_164807356_-SINEAluAluSx1
CAediting_221958chr2_164808013_-SINEAluAluSz
CAediting_221959chr2_164808087_-SINEAluAluSz
CAediting_221960chr2_164808093_-SINEAluAluSz
CAediting_221961chr2_164815182_-SINEAluAluSz
CAediting_221962chr2_164815197_-SINEAluAluSz
CAediting_221964chr2_164818866_-SINEAluAluJr
CAediting_221965chr2_164818894_-SINEAluAluJr
CAediting_221966chr2_164818990_-SINEAluAluJr
CAediting_221967chr2_164819922_-SINEAluAluSz6
CAediting_221968chr2_164819923_-SINEAluAluSz6
CAediting_221969chr2_164820317_-SINEAluAluJb
CAediting_221970chr2_164820352_-SINEAluAluJb
CAediting_221971chr2_164820358_-SINEAluAluJb
CAediting_221972chr2_164824269_-SINEAluAluSx
CAediting_221973chr2_164824272_-SINEAluAluSx
CAediting_221974chr2_164824319_-SINEAluAluSx
CAediting_221975chr2_164824367_-SINEAluAluSx
CAediting_221976chr2_164827102_-SINEAluAluSz6
CAediting_221977chr2_164831126_-SINEAluAluSx
CAediting_221978chr2_164831210_-SINEAluAluSx
CAediting_221979chr2_164832942_-SINEAluAluSp
CAediting_221980chr2_164832948_-SINEAluAluSp
CAediting_221981chr2_164833165_-SINEAluAluJb
CAediting_221982chr2_164833254_-SINEAluAluJb
CAediting_221983chr2_164833615_-SINEAluAluYk4
CAediting_221984chr2_164839419_-SINEAluAluJr

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RNA A-to-I editing events in the alternative splicing sites for COBLL1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000082438.14.COBLL1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000082438.14.COBLL1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for COBLL1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for COBLL1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for COBLL1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_221866chr2_164680743_-ENSG00000082438.14ENST00000375458hsa-miR-42981646807381646807447mer-m8164680737164680758142.00-11.39
CAediting_221868chr2_164680748_-ENSG00000082438.14ENST00000375458hsa-miR-4633-5p1646807431646807497mer-m8164680742164680762149.00-15.39
CAediting_221877chr2_164680805_-ENSG00000082438.14ENST00000375458hsa-miR-20a-3p1646808011646808088mer-1a164680801164680822143.00-9.07
CAediting_221877chr2_164680805_-ENSG00000082438.14ENST00000375458hsa-miR-544a1646808001646808067mer-m8164680799164680823165.00-18.62
CAediting_221880chr2_164680809_-ENSG00000082438.14ENST00000375458hsa-miR-6301646808031646808108mer-1a164680803164680824146.00-10.88
CAediting_221884chr2_164680848_-ENSG00000082438.14ENST00000375458hsa-miR-146a-3p1646808481646808547mer-m8164680847164680868140.00-13.35
CAediting_221884chr2_164680848_-ENSG00000082438.14ENST00000375458hsa-miR-2276-5p1646808461646808527mer-m8164680845164680866140.00-16.48
CAediting_221871chr2_164680782_-ENSG00000082438.14ENST00000375458hsa-miR-372-5p1646807821646807887mer-m8164680781164680806147.00-14.22
CAediting_221871chr2_164680782_-ENSG00000082438.14ENST00000375458hsa-miR-3928-5p1646807781646807847mer-m8164680777164680798149.00-15.46
CAediting_221871chr2_164680782_-ENSG00000082438.14ENST00000375458hsa-miR-6806-3p1646807781646807847mer-m8164680777164680798151.00-15.05
CAediting_221871chr2_164680782_-ENSG00000082438.14ENST00000375458hsa-miR-6854-5p1646807801646807856mer164680779164680799148.00-19.53
CAediting_221873chr2_164680789_-ENSG00000082438.14ENST00000375458hsa-miR-4762-5p1646807831646807908mer-1a164680783164680803141.00-6.12
CAediting_221874chr2_164680790_-ENSG00000082438.14ENST00000375458hsa-miR-42721646807871646807937mer-m8164680786164680803156.00-7.89

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_221884chr2_164680848_-ENSG00000082438.14ENST00000375458hsa-miR-1237-3p1646808461646808527mer-m8164680845164680865140-13.19
CAediting_221875chr2_164680794_-ENSG00000082438.14ENST00000375458hsa-miR-1285-3p1646807931646807997mer-m8164680792164680813140-14.07
CAediting_221875chr2_164680794_-ENSG00000082438.14ENST00000375458hsa-miR-1285-3p1646807931646807997mer-m8164680792164680813140-14.07
CAediting_221866chr2_164680743_-ENSG00000082438.14ENST00000375458hsa-miR-190a-5p1646807411646807466mer164680740164680758144-12.72
CAediting_221867chr2_164680745_-ENSG00000082438.14ENST00000375458hsa-miR-190a-5p1646807411646807466mer164680740164680758144-12.72
CAediting_221866chr2_164680743_-ENSG00000082438.14ENST00000375458hsa-miR-190b-5p1646807411646807466mer164680740164680760149-13.68
CAediting_221867chr2_164680745_-ENSG00000082438.14ENST00000375458hsa-miR-190b-5p1646807411646807466mer164680740164680760149-13.68
CAediting_221875chr2_164680794_-ENSG00000082438.14ENST00000375458hsa-miR-3187-5p1646807931646807997mer-m8164680792164680814148-16.84
CAediting_221866chr2_164680743_-ENSG00000082438.14ENST00000375458hsa-miR-32011646807401646807467mer-m8164680739164680755140-13.7
CAediting_221867chr2_164680745_-ENSG00000082438.14ENST00000375458hsa-miR-32011646807401646807467mer-m8164680739164680755140-13.7
CAediting_221864chr2_164680688_-ENSG00000082438.14ENST00000375458hsa-miR-45381646806831646806897mer-1a164680683164680706142-16.7
CAediting_221866chr2_164680743_-ENSG00000082438.14ENST00000375458hsa-miR-47911646807401646807467mer-m8164680739164680758147-14.41
CAediting_221867chr2_164680745_-ENSG00000082438.14ENST00000375458hsa-miR-47911646807401646807467mer-m8164680739164680758147-14.41
CAediting_221875chr2_164680794_-ENSG00000082438.14ENST00000375458hsa-miR-5189-5p1646807931646807997mer-m8164680792164680815140-13.48
CAediting_221865chr2_164680699_-ENSG00000082438.14ENST00000375458hsa-miR-5771646806961646807027mer-m8164680695164680717148-7.68
CAediting_221871chr2_164680782_-ENSG00000082438.14ENST00000375458hsa-miR-6071646807821646807887mer-m8164680781164680801142-7.62
CAediting_221875chr2_164680794_-ENSG00000082438.14ENST00000375458hsa-miR-6121646807931646807997mer-m8164680792164680812144-19.12
CAediting_221875chr2_164680794_-ENSG00000082438.14ENST00000375458hsa-miR-68601646807931646807997mer-m8164680792164680812148-23.13

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_980496chr14_31014685_-ENSG00000082438.14ENST00000375458hsa-miR-624-3p1646811421646811487mer-m8164681141164681163149-17.98
CAediting_980496chr14_31014685_-ENSG00000082438.14ENST00000375458hsa-miR-624-3p1646805001646805067mer-m8164680499164680521147-17.9
CAediting_393chr1_1167164_+ENSG00000082438.14ENST00000375458hsa-miR-200b-3p1646811701646811778mer-1a164681170164681191147-11
CAediting_688081chr9_63819627_+ENSG00000082438.14ENST00000375458hsa-miR-4477b1646843721646843787mer-m8164684371164684396153-13.59
CAediting_688081chr9_63819627_+ENSG00000082438.14ENST00000375458hsa-miR-4477b1646805481646805547mer-m8164680547164680568156-15.31
CAediting_1054808chr15_66496985_-ENSG00000082438.14ENST00000375458hsa-miR-45121646812511646812577mer-m8164681250164681271146-15.7
CAediting_1229415chr17_67471547_+ENSG00000082438.14ENST00000375458hsa-miR-548aa1646858091646858157mer-m8164685808164685834159-17.2
CAediting_117844chr1_162342605_+ENSG00000082438.14ENST00000375458hsa-miR-556-3p1646811591646811657mer-m8164681158164681183149-11.53
CAediting_442554chr5_154685830_+ENSG00000082438.14ENST00000375458hsa-miR-13031646831231646831308mer-1a164683123164683147150-20.82
CAediting_1229415chr17_67471547_+ENSG00000082438.14ENST00000342193hsa-miR-548aa1646858091646858157mer-m8164685808164685834159-17.2
CAediting_1229415chr17_67471547_+ENSG00000082438.14ENST00000409184hsa-miR-548aa1646858091646858157mer-m8164685808164685834159-17.2
CAediting_468389chr6_31355314_-ENSG00000082438.14ENST00000375458hsa-miR-6891-5p1646831291646831346mer164683128164683148141-30.51

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_688080chr9_63819626_+ENSG00000082438.14ENST00000375458hsa-miR-4477b1646819401646819467mer-m8164681939164681964143-10.5
CAediting_688081chr9_63819627_+ENSG00000082438.14ENST00000375458hsa-miR-4477b1646819401646819467mer-m8164681939164681964143-10.5
CAediting_396018chr5_1062918_-ENSG00000082438.14ENST00000375458hsa-miR-46351646820341646820396mer164682033164682054149-19.16
CAediting_414656chr5_72878640_+ENSG00000082438.14ENST00000375458hsa-miR-4804-3p1646849671646849748mer-1a164684967164684990146-11.55
CAediting_1524209chrX_134546392_-ENSG00000082438.14ENST00000375458hsa-miR-503-5p1646857241646857296mer164685723164685745143-19.98
CAediting_1229415chr17_67471547_+ENSG00000082438.14ENST00000375458hsa-miR-548aa1646822431646822497mer-1a164682243164682270142-16.54
CAediting_1229413chr17_67471544_+ENSG00000082438.14ENST00000375458hsa-miR-548aa1646822431646822497mer-1a164682243164682270142-16.54
CAediting_1229414chr17_67471546_+ENSG00000082438.14ENST00000375458hsa-miR-548aa1646822431646822497mer-1a164682243164682270142-16.54
CAediting_1229415chr17_67471547_+ENSG00000082438.14ENST00000375458hsa-miR-548aa1646819871646819937mer-m8164681986164682011144-9.06
CAediting_1229413chr17_67471544_+ENSG00000082438.14ENST00000375458hsa-miR-548aa1646819871646819937mer-m8164681986164682011144-9.06
CAediting_1229414chr17_67471546_+ENSG00000082438.14ENST00000375458hsa-miR-548aa1646819871646819937mer-m8164681986164682011144-9.06
CAediting_228905chr2_188297554_+ENSG00000082438.14ENST00000375458hsa-miR-561-3p1646804141646804207mer-m8164680413164680434144-8.39
CAediting_228905chr2_188297554_+ENSG00000082438.14ENST00000375458hsa-miR-561-3p1646850971646851048mer-1a164685097164685123142-3.61
CAediting_524911chr7_5495852_-ENSG00000082438.14ENST00000375458hsa-miR-589-3p1646849071646849137mer-m8164684906164684929155-20.46
CAediting_524911chr7_5495852_-ENSG00000082438.14ENST00000375458hsa-miR-589-3p1646834321646834398mer-1a164683432164683455146-13.69
CAediting_524911chr7_5495852_-ENSG00000082438.14ENST00000375458hsa-miR-589-3p1646829281646829347mer-m8164682927164682949155-17.95
CAediting_1524209chrX_134546392_-ENSG00000082438.14ENST00000342193hsa-miR-503-5p1646857241646857296mer164685723164685745143-19.98
CAediting_228905chr2_188297554_+ENSG00000082438.14ENST00000342193hsa-miR-561-3p1646850971646851048mer-1a164685097164685123142-3.61
CAediting_1524209chrX_134546392_-ENSG00000082438.14ENST00000409184hsa-miR-503-5p1646857241646857296mer164685723164685745143-19.98
CAediting_228905chr2_188297554_+ENSG00000082438.14ENST00000409184hsa-miR-561-3p1646850971646851048mer-1a164685097164685123142-3.61

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for COBLL1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000375458.5protein_codingSoverviewSoverview
ENST00000392717.5protein_codingSoverviewSoverview
ENST00000493868.4retained_intronSoverviewSoverview
ENST00000493921.1processed_transcriptSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_221864ENST00000375458.5chr2_164680688_--2329.20-2329.50-2333.20
CAediting_221865ENST00000375458.5chr2_164680699_--2329.50-2329.50-2333.20
CAediting_221866ENST00000375458.5chr2_164680743_--2329.50-2329.50-2333.20
CAediting_221867ENST00000375458.5chr2_164680745_--2329.80-2329.50-2333.20
CAediting_221868ENST00000375458.5chr2_164680748_--2329.20-2329.50-2333.20
CAediting_221869ENST00000375458.5chr2_164680749_--2329.60-2329.50-2333.20
CAediting_221870ENST00000375458.5chr2_164680772_--2329.60-2329.50-2333.20
CAediting_221871ENST00000375458.5chr2_164680782_--2329.50-2329.50-2333.20
CAediting_221872ENST00000375458.5chr2_164680788_--2334.00-2329.50-2333.20
CAediting_221873ENST00000375458.5chr2_164680789_--2334.00-2329.50-2333.20
CAediting_221874ENST00000375458.5chr2_164680790_--2329.20-2329.50-2333.20
CAediting_221875ENST00000375458.5chr2_164680794_--2329.50-2329.50-2333.20
CAediting_221876ENST00000375458.5chr2_164680803_--2328.80-2329.50-2333.20
CAediting_221877ENST00000375458.5chr2_164680805_--2329.50-2329.50-2333.20
CAediting_221878ENST00000375458.5chr2_164680807_--2329.50-2329.50-2333.20
CAediting_221879ENST00000375458.5chr2_164680808_--2329.60-2329.50-2333.20
CAediting_221880ENST00000375458.5chr2_164680809_--2329.60-2329.50-2333.20
CAediting_221881ENST00000375458.5chr2_164680810_--2329.60-2329.50-2333.20
CAediting_221882ENST00000375458.5chr2_164680814_--2329.20-2329.50-2333.20
CAediting_221883ENST00000375458.5chr2_164680840_--2331.60-2329.50-2333.20
CAediting_221884ENST00000375458.5chr2_164680848_--2331.00-2329.50-2333.20
CAediting_221864ENST00000392717.5chr2_164680688_--2352.70-2353.00-2356.30
CAediting_221865ENST00000392717.5chr2_164680699_--2353.00-2353.00-2356.30
CAediting_221866ENST00000392717.5chr2_164680743_--2353.00-2353.00-2356.30
CAediting_221867ENST00000392717.5chr2_164680745_--2353.30-2353.00-2356.30
CAediting_221868ENST00000392717.5chr2_164680748_--2352.70-2353.00-2356.30
CAediting_221869ENST00000392717.5chr2_164680749_--2353.10-2353.00-2356.30
CAediting_221870ENST00000392717.5chr2_164680772_--2353.10-2353.00-2356.30
CAediting_221871ENST00000392717.5chr2_164680782_--2353.00-2353.00-2356.30
CAediting_221872ENST00000392717.5chr2_164680788_--2357.50-2353.00-2356.30
CAediting_221873ENST00000392717.5chr2_164680789_--2357.50-2353.00-2356.30
CAediting_221874ENST00000392717.5chr2_164680790_--2352.70-2353.00-2356.30
CAediting_221875ENST00000392717.5chr2_164680794_--2353.00-2353.00-2356.30
CAediting_221876ENST00000392717.5chr2_164680803_--2352.30-2353.00-2356.30
CAediting_221877ENST00000392717.5chr2_164680805_--2353.00-2353.00-2356.30
CAediting_221878ENST00000392717.5chr2_164680807_--2353.00-2353.00-2356.30
CAediting_221879ENST00000392717.5chr2_164680808_--2353.10-2353.00-2356.30
CAediting_221880ENST00000392717.5chr2_164680809_--2353.10-2353.00-2356.30
CAediting_221881ENST00000392717.5chr2_164680810_--2353.10-2353.00-2356.30
CAediting_221882ENST00000392717.5chr2_164680814_--2352.70-2353.00-2356.30
CAediting_221883ENST00000392717.5chr2_164680840_--2355.10-2353.00-2356.30
CAediting_221884ENST00000392717.5chr2_164680848_--2354.10-2353.00-2356.30
CAediting_221937ENST00000493868.4chr2_164724049_--1515.40-1516.30-1515.40
CAediting_221943ENST00000493921.1chr2_164761292_--128.90-128.20-139.70
CAediting_221944ENST00000493921.1chr2_164761325_--129.80-128.20-139.70
CAediting_221945ENST00000493921.1chr2_164761326_--131.10-128.20-139.70
CAediting_221946ENST00000493921.1chr2_164761332_--129.20-128.20-139.70
CAediting_221947ENST00000493921.1chr2_164761369_--128.90-128.20-139.70

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Relation with ADAR for COBLL1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
PRADCAediting_221865chr2_164680699_-0.01868300494904180.195113818140782....
LIHCCAediting_221877chr2_164680805_-....0.02073557441663330.21272877153781
LUADCAediting_221877chr2_164680805_-0.02301786782335380.306141526497324....
PRADCAediting_221877chr2_164680805_-0.01851750301827530.186017804431346....

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Relation with cancer stages for COBLL1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
KIRPpathologic_stageCAediting_221877chr2_164680805_-0.0426064619229230.290862735429579
THCApathologic_stageCAediting_221875chr2_164680794_-0.01627797707854050.29930682256975

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Relation with survival for COBLL1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for COBLL1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for COBLL1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource