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Editing gene: COPZ1 (CAeditome ID:22818)

Gene summary for COPZ1

Gene summary

Gene information	Gene symbol	COPZ1
	Gene ID	22818
	Gene name	COPI coat complex subunit zeta 1
	Synonyms	CGI-120\|COPZ\|HSPC181\|zeta-COP\|zeta1-COP
	Cytomap	12q13.13
	Type of gene	protein-coding
	Description	coatomer subunit zeta-1coatomer protein complex subunit zeta 1coatomer protein complex, subunit zetazeta-1 COPzeta-1-coat protein
	Modification date	20210518
	UniProtAcc	P61923
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
COPZ1	GO:0006891	Coatomer subunit zeta-1	11056392
COPZ1	GO:0030126	Coatomer subunit zeta-1	11056392
COPZ1	GO:0030126	Coatomer subunit zeta-1	14729954

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RNA A-to-I events for COPZ1

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000111481.8

RNA A-to-I editing events in Cancer.

CAediting_894446(54306170, +), CAediting_894447(54306187, +), CAediting_894448(54306202, +), CAediting_894449(54306207, +), CAediting_894450(54306208, +), CAediting_894451(54306742, +), CAediting_894452(54309761, +), CAediting_894453(54309802, +), CAediting_894454(54309819, +), CAediting_894455(54309822, +), CAediting_894456(54309839, +), CAediting_894457(54310735, +), CAediting_894458(54311740, +), CAediting_894459(54312925, +), CAediting_894460(54313497, +), CAediting_894461(54318135, +), CAediting_894462(54319190, +), CAediting_894463(54323842, +), CAediting_894464(54326325, +), CAediting_894465(54327248, +), CAediting_894466(54327439, +), CAediting_894467(54327748, +), CAediting_894468(54327752, +), CAediting_894469(54328162, +), CAediting_894470(54328481, +), CAediting_894471(54328486, +), CAediting_894472(54328498, +), CAediting_894473(54329382, +), CAediting_894474(54329421, +), CAediting_894475(54329432, +), CAediting_894476(54329505, +), CAediting_894477(54329561, +), CAediting_894478(54331237, +), CAediting_894479(54331320, +), CAediting_894480(54331391, +), CAediting_894481(54332468, +), CAediting_894482(54332482, +), CAediting_894483(54332536, +), CAediting_894484(54332538, +), CAediting_894485(54332553, +), CAediting_894486(54332558, +), CAediting_894487(54332559, +), CAediting_894488(54332560, +), CAediting_894489(54332574, +), CAediting_894490(54332576, +), CAediting_894491(54332579, +), CAediting_894492(54332584, +), CAediting_894493(54332587, +), CAediting_894494(54332591, +), CAediting_894495(54332613, +), CAediting_894496(54332619, +), CAediting_894497(54332640, +), CAediting_894498(54332643, +), CAediting_894499(54332646, +), CAediting_894500(54332654, +), CAediting_894501(54332675, +), CAediting_894502(54333064, +), CAediting_894503(54333144, +), CAediting_894504(54333147, +), CAediting_894505(54333148, +), CAediting_894506(54333154, +), CAediting_894507(54333173, +), CAediting_894508(54333180, +), CAediting_894509(54333183, +), CAediting_894510(54333220, +), CAediting_894511(54333226, +), CAediting_894512(54333266, +), CAediting_894513(54333586, +), CAediting_894514(54333629, +), CAediting_894515(54334301, +), CAediting_894516(54334347, +), CAediting_894517(54334353, +), CAediting_894518(54334362, +), CAediting_894519(54334370, +), CAediting_894520(54334812, +), CAediting_894521(54334972, +), CAediting_894522(54334988, +), CAediting_894523(54335043, +), CAediting_894524(54335053, +), CAediting_894525(54335054, +), CAediting_894526(54335548, +), CAediting_894527(54335592, +), CAediting_894528(54335703, +), CAediting_894529(54335730, +), CAediting_894530(54335806, +), CAediting_894531(54335811, +), CAediting_894532(54335930, +), CAediting_894533(54335952, +), CAediting_894534(54336430, +), CAediting_894535(54336478, +), CAediting_894536(54336857, +), CAediting_894537(54336866, +), CAediting_894538(54336869, +), CAediting_894539(54336875, +), CAediting_894540(54336901, +), CAediting_894541(54336907, +), CAediting_894542(54336911, +), CAediting_894543(54336930, +), CAediting_894544(54336931, +), CAediting_894545(54336934, +), CAediting_894546(54336937, +), CAediting_894547(54336943, +), CAediting_894548(54336967, +), CAediting_894549(54339189, +), CAediting_894550(54339403, +), CAediting_894551(54339417, +), CAediting_894552(54339422, +), CAediting_894553(54339433, +), CAediting_894554(54339465, +), CAediting_894555(54339481, +), CAediting_894556(54339581, +), CAediting_894557(54339582, +), CAediting_894558(54339599, +), CAediting_894559(54340910, +), CAediting_894560(54343091, +), CAediting_894561(54344413, +), CAediting_894562(54344416, +), CAediting_894563(54345703, +), CAediting_894564(54345708, +), CAediting_894565(54345810, +), CAediting_894566(54346655, +), CAediting_894567(54346659, +), CAediting_894568(54346660, +), CAediting_894569(54346670, +), CAediting_894570(54346674, +), CAediting_894571(54346700, +), CAediting_894572(54346701, +), CAediting_894573(54346709, +), CAediting_894574(54346729, +), CAediting_894575(54346776, +), CAediting_894576(54346781, +), CAediting_894577(54346831, +), CAediting_894578(54346843, +), CAediting_894579(54346844, +), CAediting_894580(54348575, +), CAediting_894581(54348577, +), CAediting_894582(54348617, +), CAediting_894583(54348638, +), CAediting_894584(54348694, +),

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RNA editing positional annotations for COPZ1 using Annovar

Protein coding RNA editing(s).

CAeditome ID	Position	Variant type	ENST	NTchange	AAchange	SIFT_score	Polyphen2_HVAR_score	PROVEAN_pred
CAediting_894566	chr12_54346655_+	nonsynonymous SNV	ENST00000552218.4	c.A361G	p.R121G	D	.	N
CAediting_894567	chr12_54346659_+	nonsynonymous SNV	ENST00000552218.4	c.A365G	p.Q122R	D	.	N

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_894446	chr12_54306170_+	ncRNA_intronic
CAediting_894447	chr12_54306187_+	ncRNA_intronic
CAediting_894448	chr12_54306202_+	ncRNA_intronic
CAediting_894449	chr12_54306207_+	ncRNA_intronic
CAediting_894450	chr12_54306208_+	ncRNA_intronic
CAediting_894451	chr12_54306742_+	ncRNA_intronic
CAediting_894452	chr12_54309761_+	ncRNA_intronic
CAediting_894453	chr12_54309802_+	ncRNA_intronic
CAediting_894454	chr12_54309819_+	ncRNA_intronic
CAediting_894455	chr12_54309822_+	ncRNA_intronic
CAediting_894456	chr12_54309839_+	ncRNA_intronic
CAediting_894457	chr12_54310735_+	ncRNA_intronic
CAediting_894458	chr12_54311740_+	ncRNA_intronic
CAediting_894459	chr12_54312925_+	ncRNA_intronic
CAediting_894460	chr12_54313497_+	ncRNA_intronic
CAediting_894461	chr12_54318135_+	ncRNA_intronic
CAediting_894462	chr12_54319190_+	ncRNA_intronic
CAediting_894463	chr12_54323842_+	ncRNA_intronic
CAediting_894464	chr12_54326325_+	ncRNA_intronic
CAediting_894465	chr12_54327248_+	ncRNA_intronic
CAediting_894466	chr12_54327439_+	ncRNA_intronic
CAediting_894467	chr12_54327748_+	ncRNA_intronic
CAediting_894468	chr12_54327752_+	ncRNA_intronic
CAediting_894469	chr12_54328162_+	ncRNA_intronic
CAediting_894470	chr12_54328481_+	ncRNA_intronic
CAediting_894471	chr12_54328486_+	ncRNA_intronic
CAediting_894472	chr12_54328498_+	ncRNA_intronic
CAediting_894473	chr12_54329382_+	ncRNA_intronic
CAediting_894474	chr12_54329421_+	ncRNA_intronic
CAediting_894475	chr12_54329432_+	ncRNA_intronic
CAediting_894476	chr12_54329505_+	ncRNA_intronic
CAediting_894477	chr12_54329561_+	ncRNA_intronic
CAediting_894478	chr12_54331237_+	ncRNA_intronic
CAediting_894479	chr12_54331320_+	ncRNA_intronic
CAediting_894480	chr12_54331391_+	ncRNA_intronic
CAediting_894481	chr12_54332468_+	ncRNA_intronic
CAediting_894482	chr12_54332482_+	ncRNA_intronic
CAediting_894483	chr12_54332536_+	ncRNA_intronic
CAediting_894484	chr12_54332538_+	ncRNA_intronic
CAediting_894485	chr12_54332553_+	ncRNA_intronic
CAediting_894486	chr12_54332558_+	ncRNA_intronic
CAediting_894487	chr12_54332559_+	ncRNA_intronic
CAediting_894488	chr12_54332560_+	ncRNA_intronic
CAediting_894489	chr12_54332574_+	ncRNA_intronic
CAediting_894490	chr12_54332576_+	ncRNA_intronic
CAediting_894491	chr12_54332579_+	ncRNA_intronic
CAediting_894492	chr12_54332584_+	ncRNA_intronic
CAediting_894493	chr12_54332587_+	ncRNA_intronic
CAediting_894494	chr12_54332591_+	ncRNA_intronic
CAediting_894495	chr12_54332613_+	ncRNA_intronic
CAediting_894496	chr12_54332619_+	ncRNA_intronic
CAediting_894497	chr12_54332640_+	ncRNA_intronic
CAediting_894498	chr12_54332643_+	ncRNA_intronic
CAediting_894499	chr12_54332646_+	ncRNA_intronic
CAediting_894500	chr12_54332654_+	ncRNA_intronic
CAediting_894501	chr12_54332675_+	ncRNA_intronic
CAediting_894502	chr12_54333064_+	ncRNA_intronic
CAediting_894503	chr12_54333144_+	ncRNA_intronic
CAediting_894504	chr12_54333147_+	ncRNA_intronic
CAediting_894505	chr12_54333148_+	ncRNA_intronic
CAediting_894506	chr12_54333154_+	ncRNA_intronic
CAediting_894507	chr12_54333173_+	ncRNA_intronic
CAediting_894508	chr12_54333180_+	ncRNA_intronic
CAediting_894509	chr12_54333183_+	ncRNA_intronic
CAediting_894510	chr12_54333220_+	ncRNA_intronic
CAediting_894511	chr12_54333226_+	ncRNA_intronic
CAediting_894512	chr12_54333266_+	ncRNA_intronic
CAediting_894513	chr12_54333586_+	ncRNA_intronic
CAediting_894514	chr12_54333629_+	ncRNA_intronic
CAediting_894515	chr12_54334301_+	ncRNA_intronic
CAediting_894516	chr12_54334347_+	ncRNA_intronic
CAediting_894517	chr12_54334353_+	ncRNA_intronic
CAediting_894518	chr12_54334362_+	ncRNA_intronic
CAediting_894519	chr12_54334370_+	ncRNA_intronic
CAediting_894520	chr12_54334812_+	ncRNA_intronic
CAediting_894521	chr12_54334972_+	ncRNA_intronic
CAediting_894522	chr12_54334988_+	ncRNA_intronic
CAediting_894523	chr12_54335043_+	ncRNA_intronic
CAediting_894524	chr12_54335053_+	ncRNA_intronic
CAediting_894525	chr12_54335054_+	ncRNA_intronic
CAediting_894526	chr12_54335548_+	ncRNA_intronic
CAediting_894527	chr12_54335592_+	ncRNA_intronic
CAediting_894528	chr12_54335703_+	ncRNA_intronic
CAediting_894529	chr12_54335730_+	ncRNA_intronic
CAediting_894530	chr12_54335806_+	ncRNA_intronic
CAediting_894531	chr12_54335811_+	ncRNA_intronic
CAediting_894532	chr12_54335930_+	ncRNA_intronic
CAediting_894533	chr12_54335952_+	ncRNA_intronic
CAediting_894534	chr12_54336430_+	ncRNA_intronic
CAediting_894535	chr12_54336478_+	ncRNA_intronic
CAediting_894536	chr12_54336857_+	ncRNA_intronic
CAediting_894537	chr12_54336866_+	ncRNA_intronic
CAediting_894538	chr12_54336869_+	ncRNA_intronic
CAediting_894539	chr12_54336875_+	ncRNA_intronic
CAediting_894540	chr12_54336901_+	ncRNA_intronic
CAediting_894541	chr12_54336907_+	ncRNA_intronic
CAediting_894542	chr12_54336911_+	ncRNA_intronic
CAediting_894543	chr12_54336930_+	ncRNA_intronic
CAediting_894544	chr12_54336931_+	ncRNA_intronic
CAediting_894545	chr12_54336934_+	ncRNA_intronic
CAediting_894546	chr12_54336937_+	ncRNA_intronic
CAediting_894547	chr12_54336943_+	ncRNA_intronic
CAediting_894548	chr12_54336967_+	ncRNA_intronic
CAediting_894549	chr12_54339189_+	ncRNA_intronic
CAediting_894550	chr12_54339403_+	ncRNA_intronic
CAediting_894551	chr12_54339417_+	ncRNA_intronic
CAediting_894552	chr12_54339422_+	ncRNA_intronic
CAediting_894553	chr12_54339433_+	ncRNA_intronic
CAediting_894554	chr12_54339465_+	ncRNA_intronic
CAediting_894555	chr12_54339481_+	ncRNA_intronic
CAediting_894556	chr12_54339581_+	ncRNA_intronic
CAediting_894557	chr12_54339582_+	ncRNA_intronic
CAediting_894558	chr12_54339599_+	ncRNA_intronic
CAediting_894559	chr12_54340910_+	ncRNA_intronic
CAediting_894560	chr12_54343091_+	ncRNA_intronic
CAediting_894561	chr12_54344413_+	ncRNA_intronic
CAediting_894562	chr12_54344416_+	ncRNA_intronic
CAediting_894563	chr12_54345703_+	ncRNA_intronic
CAediting_894564	chr12_54345708_+	ncRNA_intronic
CAediting_894565	chr12_54345810_+	ncRNA_intronic
CAediting_894566	chr12_54346655_+	exonic
CAediting_894567	chr12_54346659_+	exonic
CAediting_894568	chr12_54346660_+	exonic
CAediting_894569	chr12_54346670_+	exonic
CAediting_894570	chr12_54346674_+	exonic
CAediting_894571	chr12_54346700_+	ncRNA_intronic
CAediting_894572	chr12_54346701_+	ncRNA_intronic
CAediting_894573	chr12_54346709_+	ncRNA_intronic
CAediting_894574	chr12_54346729_+	ncRNA_intronic
CAediting_894575	chr12_54346776_+	ncRNA_intronic
CAediting_894576	chr12_54346781_+	ncRNA_intronic
CAediting_894577	chr12_54346831_+	ncRNA_intronic
CAediting_894578	chr12_54346843_+	ncRNA_intronic
CAediting_894579	chr12_54346844_+	ncRNA_intronic
CAediting_894580	chr12_54348575_+	ncRNA_intronic
CAediting_894581	chr12_54348577_+	ncRNA_intronic
CAediting_894582	chr12_54348617_+	ncRNA_intronic
CAediting_894583	chr12_54348638_+	ncRNA_intronic
CAediting_894584	chr12_54348694_+	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_894446	chr12_54306170_+	SINE	Alu	AluSx1
CAediting_894447	chr12_54306187_+	SINE	Alu	AluSx1
CAediting_894448	chr12_54306202_+	SINE	Alu	AluSx1
CAediting_894449	chr12_54306207_+	SINE	Alu	AluSx1
CAediting_894450	chr12_54306208_+	SINE	Alu	AluSx1
CAediting_894451	chr12_54306742_+	SINE	Alu	AluSq2
CAediting_894452	chr12_54309761_+	SINE	Alu	AluJr
CAediting_894453	chr12_54309802_+	SINE	Alu	AluJr
CAediting_894454	chr12_54309819_+	SINE	Alu	AluJr
CAediting_894455	chr12_54309822_+	SINE	Alu	AluJr
CAediting_894456	chr12_54309839_+	SINE	Alu	AluJr
CAediting_894457	chr12_54310735_+	SINE	Alu	AluSx
CAediting_894458	chr12_54311740_+	SINE	Alu	AluSp
CAediting_894459	chr12_54312925_+	SINE	Alu	AluSz
CAediting_894460	chr12_54313497_+	SINE	Alu	AluSc8
CAediting_894461	chr12_54318135_+	SINE	Alu	AluSg
CAediting_894462	chr12_54319190_+	SINE	Alu	AluSq2
CAediting_894463	chr12_54323842_+	SINE	Alu	AluSp
CAediting_894464	chr12_54326325_+	SINE	Alu	AluY
CAediting_894465	chr12_54327248_+	SINE	Alu	AluSz
CAediting_894466	chr12_54327439_+	SINE	Alu	AluSx
CAediting_894467	chr12_54327748_+	SINE	Alu	AluJo
CAediting_894468	chr12_54327752_+	SINE	Alu	AluJo
CAediting_894469	chr12_54328162_+	SINE	Alu	AluSz
CAediting_894470	chr12_54328481_+	SINE	Alu	AluSg
CAediting_894471	chr12_54328486_+	SINE	Alu	AluSg
CAediting_894472	chr12_54328498_+	SINE	Alu	AluSg
CAediting_894473	chr12_54329382_+	SINE	Alu	AluSq2
CAediting_894474	chr12_54329421_+	SINE	Alu	AluSq2
CAediting_894475	chr12_54329432_+	SINE	Alu	AluSq2
CAediting_894476	chr12_54329505_+	SINE	Alu	AluSq2
CAediting_894477	chr12_54329561_+	SINE	Alu	AluSq2
CAediting_894478	chr12_54331237_+	SINE	Alu	AluSq4
CAediting_894479	chr12_54331320_+	SINE	Alu	AluSq4
CAediting_894480	chr12_54331391_+	SINE	Alu	AluSq4
CAediting_894481	chr12_54332468_+	SINE	Alu	AluSq2
CAediting_894482	chr12_54332482_+	SINE	Alu	AluSq2
CAediting_894483	chr12_54332536_+	SINE	Alu	AluSq2
CAediting_894484	chr12_54332538_+	SINE	Alu	AluSq2
CAediting_894485	chr12_54332553_+	SINE	Alu	AluSq2
CAediting_894486	chr12_54332558_+	SINE	Alu	AluSq2
CAediting_894487	chr12_54332559_+	SINE	Alu	AluSq2
CAediting_894488	chr12_54332560_+	SINE	Alu	AluSq2
CAediting_894489	chr12_54332574_+	SINE	Alu	AluSq2
CAediting_894490	chr12_54332576_+	SINE	Alu	AluSq2
CAediting_894491	chr12_54332579_+	SINE	Alu	AluSq2
CAediting_894492	chr12_54332584_+	SINE	Alu	AluSq2
CAediting_894493	chr12_54332587_+	SINE	Alu	AluSq2
CAediting_894494	chr12_54332591_+	SINE	Alu	AluSq2
CAediting_894495	chr12_54332613_+	SINE	Alu	AluSq2
CAediting_894496	chr12_54332619_+	SINE	Alu	AluSq2
CAediting_894497	chr12_54332640_+	SINE	Alu	AluSq2
CAediting_894498	chr12_54332643_+	SINE	Alu	AluSq2
CAediting_894499	chr12_54332646_+	SINE	Alu	AluSq2
CAediting_894500	chr12_54332654_+	SINE	Alu	AluSq2
CAediting_894501	chr12_54332675_+	SINE	Alu	AluSq2
CAediting_894502	chr12_54333064_+	SINE	Alu	AluSz6
CAediting_894503	chr12_54333144_+	SINE	Alu	AluSz6
CAediting_894504	chr12_54333147_+	SINE	Alu	AluSz6
CAediting_894505	chr12_54333148_+	SINE	Alu	AluSz6
CAediting_894506	chr12_54333154_+	SINE	Alu	AluSz6
CAediting_894507	chr12_54333173_+	SINE	Alu	AluSz6
CAediting_894508	chr12_54333180_+	SINE	Alu	AluSz6
CAediting_894509	chr12_54333183_+	SINE	Alu	AluSz6
CAediting_894510	chr12_54333220_+	SINE	Alu	AluSz6
CAediting_894511	chr12_54333226_+	SINE	Alu	AluSz6
CAediting_894512	chr12_54333266_+	SINE	Alu	AluSz6
CAediting_894513	chr12_54333586_+	SINE	Alu	FLAM_A
CAediting_894514	chr12_54333629_+	SINE	Alu	FLAM_A
CAediting_894515	chr12_54334301_+	SINE	Alu	AluSx1
CAediting_894516	chr12_54334347_+	SINE	Alu	AluSx1
CAediting_894517	chr12_54334353_+	SINE	Alu	AluSx1
CAediting_894518	chr12_54334362_+	SINE	Alu	AluSx1
CAediting_894519	chr12_54334370_+	SINE	Alu	AluSx1
CAediting_894520	chr12_54334812_+	SINE	Alu	AluY
CAediting_894521	chr12_54334972_+	SINE	Alu	AluSq
CAediting_894522	chr12_54334988_+	SINE	Alu	AluSq
CAediting_894523	chr12_54335043_+	SINE	Alu	AluSq
CAediting_894524	chr12_54335053_+	SINE	Alu	AluSq
CAediting_894525	chr12_54335054_+	SINE	Alu	AluSq
CAediting_894526	chr12_54335548_+	SINE	Alu	AluSx1
CAediting_894527	chr12_54335592_+	SINE	Alu	AluSx1
CAediting_894528	chr12_54335703_+	SINE	Alu	AluJo
CAediting_894529	chr12_54335730_+	SINE	Alu	AluJo
CAediting_894530	chr12_54335806_+	SINE	Alu	AluJo
CAediting_894531	chr12_54335811_+	SINE	Alu	AluJo
CAediting_894532	chr12_54335930_+	SINE	Alu	AluJo
CAediting_894533	chr12_54335952_+	SINE	Alu	AluJo
CAediting_894534	chr12_54336430_+	SINE	Alu	AluY
CAediting_894535	chr12_54336478_+	SINE	Alu	AluY
CAediting_894536	chr12_54336857_+	SINE	Alu	AluSx4
CAediting_894537	chr12_54336866_+	SINE	Alu	AluSx4
CAediting_894538	chr12_54336869_+	SINE	Alu	AluSx4
CAediting_894539	chr12_54336875_+	SINE	Alu	AluSx4
CAediting_894540	chr12_54336901_+	SINE	Alu	AluSx4
CAediting_894541	chr12_54336907_+	SINE	Alu	AluSx4
CAediting_894542	chr12_54336911_+	SINE	Alu	AluSx4
CAediting_894543	chr12_54336930_+	SINE	Alu	AluSx4
CAediting_894544	chr12_54336931_+	SINE	Alu	AluSx4
CAediting_894545	chr12_54336934_+	SINE	Alu	AluSx4
CAediting_894546	chr12_54336937_+	SINE	Alu	AluSx4
CAediting_894547	chr12_54336943_+	SINE	Alu	AluSx4
CAediting_894548	chr12_54336967_+	SINE	Alu	AluSx4
CAediting_894549	chr12_54339189_+	SINE	Alu	FLAM_C
CAediting_894550	chr12_54339403_+	SINE	Alu	AluJr
CAediting_894551	chr12_54339417_+	SINE	Alu	AluJr
CAediting_894552	chr12_54339422_+	SINE	Alu	AluJr
CAediting_894553	chr12_54339433_+	SINE	Alu	AluJr
CAediting_894554	chr12_54339465_+	SINE	Alu	AluJr
CAediting_894555	chr12_54339481_+	SINE	Alu	AluJr
CAediting_894556	chr12_54339581_+	SINE	Alu	AluJr
CAediting_894557	chr12_54339582_+	SINE	Alu	AluJr
CAediting_894558	chr12_54339599_+	SINE	Alu	AluJr
CAediting_894559	chr12_54340910_+	SINE	Alu	AluSx3
CAediting_894560	chr12_54343091_+	SINE	Alu	AluSx
CAediting_894561	chr12_54344413_+	SINE	Alu	AluYj4
CAediting_894562	chr12_54344416_+	SINE	Alu	AluYj4
CAediting_894563	chr12_54345703_+	SINE	Alu	AluY
CAediting_894564	chr12_54345708_+	SINE	Alu	AluY
CAediting_894565	chr12_54345810_+	SINE	Alu	AluY
CAediting_894566	chr12_54346655_+	SINE	Alu	AluJo
CAediting_894567	chr12_54346659_+	SINE	Alu	AluJo
CAediting_894568	chr12_54346660_+	SINE	Alu	AluJo
CAediting_894569	chr12_54346670_+	SINE	Alu	AluJo
CAediting_894570	chr12_54346674_+	SINE	Alu	AluJo
CAediting_894571	chr12_54346700_+	SINE	Alu	AluJo
CAediting_894572	chr12_54346701_+	SINE	Alu	AluJo
CAediting_894573	chr12_54346709_+	SINE	Alu	AluJo
CAediting_894574	chr12_54346729_+	SINE	Alu	AluJo
CAediting_894575	chr12_54346776_+	SINE	Alu	AluJo
CAediting_894576	chr12_54346781_+	SINE	Alu	AluJo
CAediting_894577	chr12_54346831_+	SINE	Alu	AluJo
CAediting_894578	chr12_54346843_+	SINE	Alu	AluJo
CAediting_894579	chr12_54346844_+	SINE	Alu	AluJo
CAediting_894580	chr12_54348575_+	SINE	Alu	AluSg
CAediting_894581	chr12_54348577_+	SINE	Alu	AluSg
CAediting_894582	chr12_54348617_+	SINE	Alu	AluSg
CAediting_894583	chr12_54348638_+	SINE	Alu	AluSg
CAediting_894584	chr12_54348694_+	SINE	Alu	AluSg

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RNA A-to-I editing events in the alternative splicing sites for COPZ1

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_894570	chr12_54346674_+	54346672:54346680	5SS	1+0i	ACAGTGAGA	3.45	ACGGTGAGA	8.94

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000111481.8.COPZ1.

Correlation between RNA A-to-I editing and PSI for ENSG00000111481.8.COPZ1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for COPZ1

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for COPZ1

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for COPZ1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000111481.8	ENST00000551779	hsa-miR-200b-3p	54349713	54349719	7mer-m8	54349698	54349720	145	-12.71
CAediting_688080	chr9_63819626_+	ENSG00000111481.8	ENST00000551779	hsa-miR-4477b	54350448	54350454	7mer-m8	54350432	54350455	158	-16.44
CAediting_86358	chr1_109598906_+	ENSG00000111481.8	ENST00000551779	hsa-miR-197-5p	54349719	54349726	8mer-1a	54349704	54349726	143	-19.82
CAediting_1399425	chr20_1392958_-	ENSG00000111481.8	ENST00000551779	hsa-miR-6869-5p	54350130	54350136	7mer-m8	54350117	54350137	145	-21.06
CAediting_524911	chr7_5495852_-	ENSG00000111481.8	ENST00000551779	hsa-miR-589-3p	54349878	54349884	7mer-m8	54349863	54349885	156	-19.53

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_86358	chr1_109598906_+	ENSG00000111481.8	ENST00000551779	hsa-miR-197-5p	54350129	54350136	8mer-1a	54350114	54350136	153	-19.22

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for COPZ1

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for COPZ1

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for COPZ1

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for COPZ1

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for COPZ1

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for COPZ1

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene