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Editing gene: TMED4 (CAeditome ID:222068)

Gene summary for TMED4

Gene summary

Gene information	Gene symbol	TMED4
	Gene ID	222068
	Gene name	transmembrane p24 trafficking protein 4
	Synonyms	ERS25\|GMP25iso\|HNLF\|p24a3\|p24alpha3
	Cytomap	7p13
	Type of gene	protein-coding
	Description	transmembrane emp24 domain-containing protein 4endoplasmic reticulum stress-response protein 25 kDap24 family protein alpha-3putative NF-kappa-B-activating protein 156putative NFkB activating protein HNLFtransmembrane emp24 protein transport domain c
	Modification date	20210518
	UniProtAcc	Q7Z7H5
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for TMED4

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000158604.13

RNA A-to-I editing events in Cancer.

CAediting_541656(44578663, -), CAediting_541657(44578700, -), CAediting_541658(44578703, -), CAediting_541659(44578718, -), CAediting_541660(44578742, -), CAediting_541661(44578744, -), CAediting_541662(44578754, -), CAediting_541663(44578810, -), CAediting_541664(44578815, -), CAediting_541665(44578841, -), CAediting_541666(44578860, -), CAediting_541667(44580079, -), CAediting_541668(44580220, -), CAediting_541669(44580222, -), CAediting_541670(44580225, -), CAediting_541671(44580234, -), CAediting_541672(44580235, -), CAediting_541673(44580236, -), CAediting_541674(44580244, -), CAediting_541675(44580252, -), CAediting_541676(44580257, -), CAediting_541677(44580261, -), CAediting_541678(44580286, -), CAediting_541679(44580295, -), CAediting_541680(44580298, -), CAediting_541681(44580308, -), CAediting_541682(44580312, -), CAediting_541683(44580315, -), CAediting_541684(44580350, -), CAediting_541685(44580354, -), CAediting_541686(44580356, -), CAediting_541687(44580366, -), CAediting_541688(44580369, -), CAediting_541689(44580378, -), CAediting_541690(44580391, -), CAediting_541691(44580395, -), CAediting_541692(44580396, -), CAediting_541693(44580402, -), CAediting_541694(44580421, -), CAediting_541695(44580431, -), CAediting_541696(44580440, -), CAediting_541697(44580470, -), CAediting_541698(44580474, -), CAediting_541699(44580476, -), CAediting_541700(44580688, -), CAediting_541701(44580690, -), CAediting_541702(44580702, -), CAediting_541703(44580703, -), CAediting_541704(44580704, -), CAediting_541705(44580712, -), CAediting_541706(44580730, -), CAediting_541707(44580735, -), CAediting_541708(44580742, -), CAediting_541709(44580755, -), CAediting_541710(44580764, -), CAediting_541711(44580778, -), CAediting_541712(44580782, -), CAediting_541713(44580785, -), CAediting_541714(44580791, -), CAediting_541715(44580798, -), CAediting_541716(44580812, -), CAediting_541717(44580823, -), CAediting_541718(44580825, -), CAediting_541719(44580835, -), CAediting_541720(44580838, -), CAediting_541721(44580847, -), CAediting_541722(44580860, -), CAediting_541723(44580864, -), CAediting_541724(44580865, -), CAediting_541725(44580871, -), CAediting_541726(44580885, -), CAediting_541727(44580886, -), CAediting_541728(44580891, -), CAediting_541729(44580901, -), CAediting_541730(44580904, -), CAediting_541731(44580909, -), CAediting_541732(44580910, -), CAediting_541733(44580915, -), CAediting_541734(44580935, -), CAediting_541735(44580945, -), CAediting_541736(44580947, -),

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RNA editing positional annotations for TMED4 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_541656	chr7_44578663_-	UTR3
CAediting_541657	chr7_44578700_-	UTR3
CAediting_541658	chr7_44578703_-	UTR3
CAediting_541659	chr7_44578718_-	UTR3
CAediting_541660	chr7_44578742_-	UTR3
CAediting_541661	chr7_44578744_-	UTR3
CAediting_541662	chr7_44578754_-	UTR3
CAediting_541663	chr7_44578810_-	UTR3
CAediting_541664	chr7_44578815_-	UTR3
CAediting_541665	chr7_44578841_-	UTR3
CAediting_541666	chr7_44578860_-	UTR3
CAediting_541667	chr7_44580079_-	ncRNA_exonic
CAediting_541668	chr7_44580220_-	ncRNA_exonic
CAediting_541669	chr7_44580222_-	ncRNA_exonic
CAediting_541670	chr7_44580225_-	ncRNA_exonic
CAediting_541671	chr7_44580234_-	ncRNA_exonic
CAediting_541672	chr7_44580235_-	ncRNA_exonic
CAediting_541673	chr7_44580236_-	ncRNA_exonic
CAediting_541674	chr7_44580244_-	ncRNA_exonic
CAediting_541675	chr7_44580252_-	ncRNA_exonic
CAediting_541676	chr7_44580257_-	ncRNA_exonic
CAediting_541677	chr7_44580261_-	ncRNA_exonic
CAediting_541678	chr7_44580286_-	ncRNA_exonic
CAediting_541679	chr7_44580295_-	ncRNA_exonic
CAediting_541680	chr7_44580298_-	ncRNA_exonic
CAediting_541681	chr7_44580308_-	ncRNA_exonic
CAediting_541682	chr7_44580312_-	ncRNA_exonic
CAediting_541683	chr7_44580315_-	ncRNA_exonic
CAediting_541684	chr7_44580350_-	ncRNA_exonic
CAediting_541685	chr7_44580354_-	ncRNA_exonic
CAediting_541686	chr7_44580356_-	ncRNA_exonic
CAediting_541687	chr7_44580366_-	ncRNA_exonic
CAediting_541688	chr7_44580369_-	ncRNA_exonic
CAediting_541689	chr7_44580378_-	ncRNA_exonic
CAediting_541690	chr7_44580391_-	ncRNA_exonic
CAediting_541691	chr7_44580395_-	ncRNA_exonic
CAediting_541692	chr7_44580396_-	ncRNA_exonic
CAediting_541693	chr7_44580402_-	ncRNA_exonic
CAediting_541694	chr7_44580421_-	ncRNA_exonic
CAediting_541695	chr7_44580431_-	ncRNA_exonic
CAediting_541696	chr7_44580440_-	ncRNA_exonic
CAediting_541697	chr7_44580470_-	ncRNA_exonic
CAediting_541698	chr7_44580474_-	ncRNA_exonic
CAediting_541699	chr7_44580476_-	ncRNA_exonic
CAediting_541700	chr7_44580688_-	ncRNA_exonic
CAediting_541701	chr7_44580690_-	ncRNA_exonic
CAediting_541702	chr7_44580702_-	ncRNA_exonic
CAediting_541703	chr7_44580703_-	ncRNA_exonic
CAediting_541704	chr7_44580704_-	ncRNA_exonic
CAediting_541705	chr7_44580712_-	ncRNA_exonic
CAediting_541706	chr7_44580730_-	ncRNA_exonic
CAediting_541707	chr7_44580735_-	ncRNA_exonic
CAediting_541708	chr7_44580742_-	ncRNA_exonic
CAediting_541709	chr7_44580755_-	ncRNA_exonic
CAediting_541710	chr7_44580764_-	ncRNA_exonic
CAediting_541711	chr7_44580778_-	ncRNA_exonic
CAediting_541712	chr7_44580782_-	ncRNA_exonic
CAediting_541713	chr7_44580785_-	ncRNA_exonic
CAediting_541714	chr7_44580791_-	ncRNA_exonic
CAediting_541715	chr7_44580798_-	ncRNA_exonic
CAediting_541716	chr7_44580812_-	ncRNA_exonic
CAediting_541717	chr7_44580823_-	ncRNA_exonic
CAediting_541718	chr7_44580825_-	ncRNA_exonic
CAediting_541719	chr7_44580835_-	ncRNA_exonic
CAediting_541720	chr7_44580838_-	ncRNA_exonic
CAediting_541721	chr7_44580847_-	ncRNA_exonic
CAediting_541722	chr7_44580860_-	ncRNA_exonic
CAediting_541723	chr7_44580864_-	ncRNA_exonic
CAediting_541724	chr7_44580865_-	ncRNA_exonic
CAediting_541725	chr7_44580871_-	ncRNA_exonic
CAediting_541726	chr7_44580885_-	ncRNA_exonic
CAediting_541727	chr7_44580886_-	ncRNA_exonic
CAediting_541728	chr7_44580891_-	ncRNA_exonic
CAediting_541729	chr7_44580901_-	ncRNA_exonic
CAediting_541730	chr7_44580904_-	ncRNA_exonic
CAediting_541731	chr7_44580909_-	ncRNA_exonic
CAediting_541732	chr7_44580910_-	ncRNA_exonic
CAediting_541733	chr7_44580915_-	ncRNA_exonic
CAediting_541734	chr7_44580935_-	ncRNA_exonic
CAediting_541735	chr7_44580945_-	ncRNA_exonic
CAediting_541736	chr7_44580947_-	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_541656	chr7_44578663_-	SINE	Alu	AluSq2
CAediting_541657	chr7_44578700_-	SINE	Alu	AluSq2
CAediting_541658	chr7_44578703_-	SINE	Alu	AluSq2
CAediting_541659	chr7_44578718_-	SINE	Alu	AluSq2
CAediting_541660	chr7_44578742_-	SINE	Alu	AluSq2
CAediting_541661	chr7_44578744_-	SINE	Alu	AluSq2
CAediting_541662	chr7_44578754_-	SINE	Alu	AluSq2
CAediting_541663	chr7_44578810_-	SINE	Alu	AluSq2
CAediting_541664	chr7_44578815_-	SINE	Alu	AluSq2
CAediting_541665	chr7_44578841_-	SINE	Alu	AluSq2
CAediting_541666	chr7_44578860_-	SINE	Alu	AluSq2
CAediting_541667	chr7_44580079_-	LINE	L1	L1MB3
CAediting_541668	chr7_44580220_-	SINE	Alu	AluSx
CAediting_541669	chr7_44580222_-	SINE	Alu	AluSx
CAediting_541670	chr7_44580225_-	SINE	Alu	AluSx
CAediting_541671	chr7_44580234_-	SINE	Alu	AluSx
CAediting_541672	chr7_44580235_-	SINE	Alu	AluSx
CAediting_541673	chr7_44580236_-	SINE	Alu	AluSx
CAediting_541674	chr7_44580244_-	SINE	Alu	AluSx
CAediting_541675	chr7_44580252_-	SINE	Alu	AluSx
CAediting_541676	chr7_44580257_-	SINE	Alu	AluSx
CAediting_541677	chr7_44580261_-	SINE	Alu	AluSx
CAediting_541678	chr7_44580286_-	SINE	Alu	AluSx
CAediting_541679	chr7_44580295_-	SINE	Alu	AluSx
CAediting_541680	chr7_44580298_-	SINE	Alu	AluSx
CAediting_541681	chr7_44580308_-	SINE	Alu	AluSx
CAediting_541682	chr7_44580312_-	SINE	Alu	AluSx
CAediting_541683	chr7_44580315_-	SINE	Alu	AluSx
CAediting_541684	chr7_44580350_-	SINE	Alu	AluSx
CAediting_541685	chr7_44580354_-	SINE	Alu	AluSx
CAediting_541686	chr7_44580356_-	SINE	Alu	AluSx
CAediting_541687	chr7_44580366_-	SINE	Alu	AluSx
CAediting_541688	chr7_44580369_-	SINE	Alu	AluSx
CAediting_541689	chr7_44580378_-	SINE	Alu	AluSx
CAediting_541690	chr7_44580391_-	SINE	Alu	AluSx
CAediting_541691	chr7_44580395_-	SINE	Alu	AluSx
CAediting_541692	chr7_44580396_-	SINE	Alu	AluSx
CAediting_541693	chr7_44580402_-	SINE	Alu	AluSx
CAediting_541694	chr7_44580421_-	SINE	Alu	AluSx
CAediting_541695	chr7_44580431_-	SINE	Alu	AluSx
CAediting_541696	chr7_44580440_-	SINE	Alu	AluSx
CAediting_541697	chr7_44580470_-	SINE	Alu	AluSx
CAediting_541698	chr7_44580474_-	SINE	Alu	AluSx
CAediting_541699	chr7_44580476_-	SINE	Alu	AluSx
CAediting_541700	chr7_44580688_-	SINE	Alu	AluSp
CAediting_541701	chr7_44580690_-	SINE	Alu	AluSp
CAediting_541702	chr7_44580702_-	SINE	Alu	AluSp
CAediting_541703	chr7_44580703_-	SINE	Alu	AluSp
CAediting_541704	chr7_44580704_-	SINE	Alu	AluSp
CAediting_541705	chr7_44580712_-	SINE	Alu	AluSp
CAediting_541706	chr7_44580730_-	SINE	Alu	AluSp
CAediting_541707	chr7_44580735_-	SINE	Alu	AluSp
CAediting_541708	chr7_44580742_-	SINE	Alu	AluSp
CAediting_541709	chr7_44580755_-	SINE	Alu	AluSp
CAediting_541710	chr7_44580764_-	SINE	Alu	AluSp
CAediting_541711	chr7_44580778_-	SINE	Alu	AluSp
CAediting_541712	chr7_44580782_-	SINE	Alu	AluSp
CAediting_541713	chr7_44580785_-	SINE	Alu	AluSp
CAediting_541714	chr7_44580791_-	SINE	Alu	AluSp
CAediting_541715	chr7_44580798_-	SINE	Alu	AluSp
CAediting_541716	chr7_44580812_-	SINE	Alu	AluSp
CAediting_541717	chr7_44580823_-	SINE	Alu	AluSp
CAediting_541718	chr7_44580825_-	SINE	Alu	AluSp
CAediting_541719	chr7_44580835_-	SINE	Alu	AluSp
CAediting_541720	chr7_44580838_-	SINE	Alu	AluSp
CAediting_541721	chr7_44580847_-	SINE	Alu	AluSp
CAediting_541722	chr7_44580860_-	SINE	Alu	AluSp
CAediting_541723	chr7_44580864_-	SINE	Alu	AluSp
CAediting_541724	chr7_44580865_-	SINE	Alu	AluSp
CAediting_541725	chr7_44580871_-	SINE	Alu	AluSp
CAediting_541726	chr7_44580885_-	SINE	Alu	AluSp
CAediting_541727	chr7_44580886_-	SINE	Alu	AluSp
CAediting_541728	chr7_44580891_-	SINE	Alu	AluSp
CAediting_541729	chr7_44580901_-	SINE	Alu	AluSp
CAediting_541730	chr7_44580904_-	SINE	Alu	AluSp
CAediting_541731	chr7_44580909_-	SINE	Alu	AluSp
CAediting_541732	chr7_44580910_-	SINE	Alu	AluSp
CAediting_541733	chr7_44580915_-	SINE	Alu	AluSp
CAediting_541734	chr7_44580935_-	SINE	Alu	AluSp
CAediting_541735	chr7_44580945_-	SINE	Alu	AluSp
CAediting_541736	chr7_44580947_-	SINE	Alu	AluSp

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RNA A-to-I editing events in the alternative splicing sites for TMED4

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000158604.13.TMED4.

Correlation between RNA A-to-I editing and PSI for ENSG00000158604.13.TMED4.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TMED4

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for TMED4

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TMED4

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_541671	chr7_44580234_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3189-3p	44580233	44580239	7mer-m8	44580232	44580254	146.00	-25.04
CAediting_541671	chr7_44580234_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6813-3p	44580232	44580238	7mer-m8	44580231	44580251	140.00	-12.10
CAediting_541672	chr7_44580235_-	ENSG00000158604.13	ENST00000481238	hsa-miR-326	44580233	44580239	7mer-m8	44580232	44580251	140.00	-14.17
CAediting_541672	chr7_44580235_-	ENSG00000158604.13	ENST00000481238	hsa-miR-330-5p	44580233	44580239	7mer-m8	44580232	44580255	147.00	-23.43
CAediting_541672	chr7_44580235_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4314	44580234	44580240	7mer-m8	44580233	44580250	140.00	-20.84
CAediting_541672	chr7_44580235_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514a-5p	44580232	44580238	7mer-m8	44580231	44580252	146.00	-18.91
CAediting_541672	chr7_44580235_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514a-5p	44580232	44580238	7mer-m8	44580231	44580252	146.00	-18.91
CAediting_541672	chr7_44580235_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514a-5p	44580232	44580238	7mer-m8	44580231	44580252	146.00	-18.91
CAediting_541674	chr7_44580244_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3648	44580242	44580248	7mer-m8	44580241	44580266	157.00	-33.98
CAediting_541674	chr7_44580244_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3648	44580242	44580248	7mer-m8	44580241	44580266	157.00	-33.98
CAediting_541676	chr7_44580257_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6078	44580256	44580263	8mer-1a	44580256	44580275	156.00	-22.40
CAediting_541691	chr7_44580395_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4539	44580395	44580400	6mer	44580394	44580413	141.00	-21.18
CAediting_541691	chr7_44580395_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6078	44580391	44580398	8mer-1a	44580391	44580409	149.00	-21.50
CAediting_541693	chr7_44580402_-	ENSG00000158604.13	ENST00000481238	hsa-miR-1247-3p	44580400	44580406	7mer-m8	44580399	44580421	152.00	-24.88
CAediting_541699	chr7_44580476_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4733-5p	44580473	44580479	7mer-m8	44580472	44580493	149.00	-12.04
CAediting_541701	chr7_44580690_-	ENSG00000158604.13	ENST00000481238	hsa-miR-106a-3p	44580688	44580693	6mer	44580687	44580708	141.00	-21.13
CAediting_541702	chr7_44580702_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3189-3p	44580701	44580707	7mer-m8	44580700	44580722	153.00	-24.98
CAediting_541702	chr7_44580702_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6813-3p	44580700	44580706	7mer-m8	44580699	44580719	140.00	-10.68
CAediting_541703	chr7_44580703_-	ENSG00000158604.13	ENST00000481238	hsa-miR-326	44580701	44580707	7mer-m8	44580700	44580719	140.00	-13.25
CAediting_541703	chr7_44580703_-	ENSG00000158604.13	ENST00000481238	hsa-miR-330-5p	44580701	44580707	7mer-m8	44580700	44580723	143.00	-20.01
CAediting_541703	chr7_44580703_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4314	44580702	44580708	7mer-m8	44580701	44580719	143.00	-20.84
CAediting_541703	chr7_44580703_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514a-5p	44580700	44580706	7mer-m8	44580699	44580722	150.00	-18.62
CAediting_541703	chr7_44580703_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514a-5p	44580700	44580706	7mer-m8	44580699	44580722	150.00	-18.62
CAediting_541703	chr7_44580703_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514a-5p	44580700	44580706	7mer-m8	44580699	44580722	150.00	-18.62
CAediting_541708	chr7_44580742_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4300	44580737	44580743	7mer-m8	44580736	44580755	149.00	-22.14
CAediting_541708	chr7_44580742_-	ENSG00000158604.13	ENST00000481238	hsa-miR-5591-5p	44580737	44580743	7mer-m8	44580736	44580758	141.00	-20.58
CAediting_541708	chr7_44580742_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6726-5p	44580737	44580743	7mer-m8	44580736	44580757	156.00	-31.48
CAediting_541708	chr7_44580742_-	ENSG00000158604.13	ENST00000481238	hsa-miR-920	44580737	44580743	7mer-m8	44580736	44580754	152.00	-21.34
CAediting_541712	chr7_44580782_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6509-3p	44580780	44580785	6mer	44580779	44580800	144.00	-15.34
CAediting_541714	chr7_44580791_-	ENSG00000158604.13	ENST00000481238	hsa-miR-548e-5p	44580785	44580792	8mer-1a	44580785	44580804	142.00	-7.62
CAediting_541714	chr7_44580791_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6835-3p	44580787	44580793	7mer-m8	44580786	44580808	140.00	-13.33
CAediting_541719	chr7_44580835_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4691-3p	44580831	44580837	7mer-m8	44580830	44580857	150.00	-26.36
CAediting_541722	chr7_44580860_-	ENSG00000158604.13	ENST00000481238	hsa-miR-589-5p	44580855	44580861	7mer-m8	44580854	44580874	150.00	-15.69
CAediting_541723	chr7_44580864_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4539	44580864	44580869	6mer	44580863	44580883	142.00	-24.03
CAediting_541723	chr7_44580864_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6078	44580860	44580867	8mer-1a	44580860	44580878	149.00	-21.21
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4793-3p	44580909	44580915	7mer-m8	44580908	44580931	149.00	-19.36
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6807-3p	44580908	44580913	6mer	44580907	44580929	160.00	-29.33
CAediting_541659	chr7_44578718_-	ENSG00000158604.13	ENST00000457408	hsa-miR-34a-3p	44578715	44578721	7mer-m8	44578714	44578736	147.00	-9.32
CAediting_541659	chr7_44578718_-	ENSG00000158604.13	ENST00000289577	hsa-miR-34a-3p	44578715	44578721	7mer-m8	44578714	44578736	147.00	-9.32
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000457408	hsa-miR-100-5p	44578739	44578745	7mer-m8	44578738	44578758	160.00	-20.88
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000457408	hsa-miR-99a-5p	44578739	44578745	7mer-m8	44578738	44578758	160.00	-19.76
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000457408	hsa-miR-99b-5p	44578739	44578745	7mer-m8	44578738	44578758	152.00	-24.40
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000289577	hsa-miR-100-5p	44578739	44578745	7mer-m8	44578738	44578758	160.00	-20.88
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000289577	hsa-miR-99a-5p	44578739	44578745	7mer-m8	44578738	44578758	160.00	-19.76
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000289577	hsa-miR-99b-5p	44578739	44578745	7mer-m8	44578738	44578758	152.00	-24.40
CAediting_541662	chr7_44578754_-	ENSG00000158604.13	ENST00000457408	hsa-miR-4691-3p	44578750	44578756	7mer-m8	44578749	44578770	154.00	-28.16
CAediting_541662	chr7_44578754_-	ENSG00000158604.13	ENST00000289577	hsa-miR-4691-3p	44578750	44578756	7mer-m8	44578749	44578770	154.00	-28.16
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000457408	hsa-miR-4537	44578810	44578817	8mer-1a	44578810	44578833	154.00	-21.70
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000289577	hsa-miR-4537	44578810	44578817	8mer-1a	44578810	44578833	154.00	-21.70
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000457408	hsa-miR-3940-3p	44578837	44578843	7mer-m8	44578836	44578857	143.00	-19.68
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000289577	hsa-miR-3940-3p	44578837	44578843	7mer-m8	44578836	44578857	143.00	-19.68
CAediting_541667	chr7_44580079_-	ENSG00000158604.13	ENST00000481238	hsa-miR-141-3p	44580077	44580083	7mer-m8	44580076	44580097	150.00	-13.80
CAediting_541667	chr7_44580079_-	ENSG00000158604.13	ENST00000481238	hsa-miR-200a-3p	44580077	44580083	7mer-m8	44580076	44580097	152.00	-15.78
CAediting_541673	chr7_44580236_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6771-5p	44580234	44580241	8mer-1a	44580234	44580253	156.00	-25.19
CAediting_541675	chr7_44580252_-	ENSG00000158604.13	ENST00000481238	hsa-miR-885-3p	44580247	44580253	7mer-m8	44580246	44580267	154.00	-24.89
CAediting_541678	chr7_44580286_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3940-3p	44580282	44580288	7mer-m8	44580281	44580299	144.00	-24.53
CAediting_541679	chr7_44580295_-	ENSG00000158604.13	ENST00000481238	hsa-miR-433-5p	44580294	44580300	7mer-m8	44580293	44580316	159.00	-25.35
CAediting_541687	chr7_44580366_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3614-5p	44580366	44580372	7mer-m8	44580365	44580388	152.00	-25.27
CAediting_541687	chr7_44580366_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4691-3p	44580362	44580368	7mer-m8	44580361	44580388	150.00	-26.36
CAediting_541688	chr7_44580369_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6852-5p	44580368	44580373	6mer	44580367	44580386	149.00	-26.62
CAediting_541690	chr7_44580391_-	ENSG00000158604.13	ENST00000481238	hsa-miR-589-5p	44580386	44580392	7mer-m8	44580385	44580405	150.00	-15.69
CAediting_541700	chr7_44580688_-	ENSG00000158604.13	ENST00000481238	hsa-miR-100-5p	44580685	44580691	7mer-m8	44580684	44580706	162.00	-22.89
CAediting_541700	chr7_44580688_-	ENSG00000158604.13	ENST00000481238	hsa-miR-99a-5p	44580685	44580691	7mer-m8	44580684	44580707	155.00	-21.46
CAediting_541700	chr7_44580688_-	ENSG00000158604.13	ENST00000481238	hsa-miR-99b-5p	44580685	44580691	7mer-m8	44580684	44580707	155.00	-25.13
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6771-5p	44580702	44580709	8mer-1a	44580702	44580721	152.00	-26.14
CAediting_541715	chr7_44580798_-	ENSG00000158604.13	ENST00000481238	hsa-miR-1323	44580793	44580799	7mer-m8	44580792	44580814	156.00	-16.83
CAediting_541715	chr7_44580798_-	ENSG00000158604.13	ENST00000481238	hsa-miR-548o-3p	44580793	44580799	7mer-m8	44580792	44580815	146.00	-10.27
CAediting_541715	chr7_44580798_-	ENSG00000158604.13	ENST00000481238	hsa-miR-548o-3p	44580793	44580799	7mer-m8	44580792	44580815	146.00	-10.27
CAediting_541715	chr7_44580798_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7844-5p	44580795	44580801	7mer-m8	44580794	44580815	160.00	-17.88
CAediting_541716	chr7_44580812_-	ENSG00000158604.13	ENST00000481238	hsa-miR-10400-5p	44580809	44580816	8mer-1a	44580809	44580828	147.00	-23.38
CAediting_541716	chr7_44580812_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4467	44580809	44580816	8mer-1a	44580809	44580831	143.00	-20.15
CAediting_541716	chr7_44580812_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6770-3p	44580809	44580815	7mer-m8	44580808	44580829	154.00	-19.20
CAediting_541716	chr7_44580812_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6770-3p	44580809	44580815	7mer-m8	44580808	44580829	154.00	-19.20
CAediting_541716	chr7_44580812_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6770-3p	44580809	44580815	7mer-m8	44580808	44580829	154.00	-19.20
CAediting_541720	chr7_44580838_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6840-3p	44580837	44580843	7mer-m8	44580836	44580858	155.00	-26.67
CAediting_541726	chr7_44580885_-	ENSG00000158604.13	ENST00000481238	hsa-miR-17-3p	44580885	44580891	7mer-m8	44580884	44580904	153.00	-17.56
CAediting_541726	chr7_44580885_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3929	44580882	44580887	6mer	44580881	44580905	140.00	-25.35
CAediting_541726	chr7_44580885_-	ENSG00000158604.13	ENST00000481238	hsa-miR-485-5p	44580881	44580887	7mer-m8	44580880	44580900	153.00	-17.86
CAediting_541726	chr7_44580885_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6884-5p	44580881	44580887	7mer-m8	44580880	44580902	146.00	-20.16
CAediting_541729	chr7_44580901_-	ENSG00000158604.13	ENST00000481238	hsa-miR-591	44580899	44580905	7mer-m8	44580898	44580917	154.00	-20.27
CAediting_541729	chr7_44580901_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6502-3p	44580898	44580904	7mer-m8	44580897	44580919	142.00	-13.27
CAediting_541729	chr7_44580901_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7153-3p	44580900	44580906	7mer-m8	44580899	44580915	142.00	-14.50
CAediting_541733	chr7_44580915_-	ENSG00000158604.13	ENST00000481238	hsa-miR-500a-3p	44580909	44580915	7mer-1a	44580909	44580930	144.00	-19.72
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000457408	hsa-miR-548as-3p	44578855	44578861	7mer-m8	44578854	44578875	152.00	-10.99
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000289577	hsa-miR-548as-3p	44578855	44578861	7mer-m8	44578854	44578875	152.00	-10.99
CAediting_541670	chr7_44580225_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6793-3p	44580225	44580231	7mer-m8	44580224	44580243	144.00	-15.79
CAediting_541681	chr7_44580308_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6819-3p	44580306	44580312	7mer-m8	44580305	44580325	142.00	-13.27
CAediting_541681	chr7_44580308_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6849-3p	44580304	44580310	7mer-m8	44580303	44580324	144.00	-15.09
CAediting_541681	chr7_44580308_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6877-3p	44580306	44580312	7mer-m8	44580305	44580325	146.00	-19.15

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000457408	hsa-miR-1285-3p	44578840	44578845	6mer	44578839	44578861	147	-23.41
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000457408	hsa-miR-1285-3p	44578840	44578845	6mer	44578839	44578861	147	-23.41
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000457408	hsa-miR-3160-3p	44578810	44578817	8mer-1a	44578810	44578831	153	-19.05
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000457408	hsa-miR-3160-3p	44578810	44578817	8mer-1a	44578810	44578831	153	-19.05
CAediting_541663	chr7_44578810_-	ENSG00000158604.13	ENST00000457408	hsa-miR-3174	44578808	44578813	6mer	44578807	44578827	146	-25.35
CAediting_541657	chr7_44578700_-	ENSG00000158604.13	ENST00000457408	hsa-miR-3675-3p	44578695	44578701	7mer-m8	44578694	44578715	145	-12.58
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000457408	hsa-miR-371b-5p	44578859	44578865	7mer-m8	44578858	44578879	146	-9.22
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000457408	hsa-miR-373-5p	44578859	44578865	7mer-m8	44578858	44578879	142	-9.78
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000457408	hsa-miR-4486	44578840	44578846	7mer-m8	44578839	44578855	145	-20.34
CAediting_541662	chr7_44578754_-	ENSG00000158604.13	ENST00000457408	hsa-miR-5690	44578750	44578756	7mer-m8	44578749	44578769	145	-17.67
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000457408	hsa-miR-616-5p	44578859	44578865	7mer-m8	44578858	44578879	140	-7.14
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000457408	hsa-miR-661	44578838	44578844	7mer-m8	44578837	44578860	143	-22.06
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000457408	hsa-miR-6804-3p	44578737	44578743	7mer-m8	44578736	44578758	155	-18.21
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000457408	hsa-miR-7160-5p	44578813	44578818	6mer	44578812	44578831	140	-20.08
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000457408	hsa-miR-888-5p	44578858	44578864	7mer-m8	44578857	44578877	151	-10.08
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000457408	hsa-miR-939-3p	44578839	44578845	7mer-m8	44578838	44578858	140	-15.42
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000289577	hsa-miR-1285-3p	44578840	44578845	6mer	44578839	44578861	147	-23.41
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000289577	hsa-miR-1285-3p	44578840	44578845	6mer	44578839	44578861	147	-23.41
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000289577	hsa-miR-3160-3p	44578810	44578817	8mer-1a	44578810	44578831	153	-19.05
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000289577	hsa-miR-3160-3p	44578810	44578817	8mer-1a	44578810	44578831	153	-19.05
CAediting_541663	chr7_44578810_-	ENSG00000158604.13	ENST00000289577	hsa-miR-3174	44578808	44578813	6mer	44578807	44578827	146	-25.35
CAediting_541657	chr7_44578700_-	ENSG00000158604.13	ENST00000289577	hsa-miR-3675-3p	44578695	44578701	7mer-m8	44578694	44578715	145	-12.58
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000289577	hsa-miR-371b-5p	44578859	44578865	7mer-m8	44578858	44578879	146	-9.22
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000289577	hsa-miR-373-5p	44578859	44578865	7mer-m8	44578858	44578879	142	-9.78
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000289577	hsa-miR-4486	44578840	44578846	7mer-m8	44578839	44578855	145	-20.34
CAediting_541662	chr7_44578754_-	ENSG00000158604.13	ENST00000289577	hsa-miR-5690	44578750	44578756	7mer-m8	44578749	44578769	145	-17.67
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000289577	hsa-miR-616-5p	44578859	44578865	7mer-m8	44578858	44578879	140	-7.14
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000289577	hsa-miR-661	44578838	44578844	7mer-m8	44578837	44578860	143	-22.06
CAediting_541660	chr7_44578742_-	ENSG00000158604.13	ENST00000289577	hsa-miR-6804-3p	44578737	44578743	7mer-m8	44578736	44578758	155	-18.21
CAediting_541664	chr7_44578815_-	ENSG00000158604.13	ENST00000289577	hsa-miR-7160-5p	44578813	44578818	6mer	44578812	44578831	140	-20.08
CAediting_541666	chr7_44578860_-	ENSG00000158604.13	ENST00000289577	hsa-miR-888-5p	44578858	44578864	7mer-m8	44578857	44578877	151	-10.08
CAediting_541665	chr7_44578841_-	ENSG00000158604.13	ENST00000289577	hsa-miR-939-3p	44578839	44578845	7mer-m8	44578838	44578858	140	-15.42
CAediting_541688	chr7_44580369_-	ENSG00000158604.13	ENST00000481238	hsa-miR-12126	44580366	44580373	8mer-1a	44580366	44580389	147	-13.23
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-1256	44580904	44580911	8mer-1a	44580904	44580926	152	-16.93
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-1256	44580904	44580911	8mer-1a	44580904	44580926	152	-16.93
CAediting_541673	chr7_44580236_-	ENSG00000158604.13	ENST00000481238	hsa-miR-1273h-5p	44580235	44580242	8mer-1a	44580235	44580255	149	-22.96
CAediting_541696	chr7_44580440_-	ENSG00000158604.13	ENST00000481238	hsa-miR-191-3p	44580439	44580445	7mer-m8	44580438	44580459	147	-16.26
CAediting_541667	chr7_44580079_-	ENSG00000158604.13	ENST00000481238	hsa-miR-200b-3p	44580077	44580083	7mer-m8	44580076	44580097	150	-10.93
CAediting_541667	chr7_44580079_-	ENSG00000158604.13	ENST00000481238	hsa-miR-200c-3p	44580077	44580083	7mer-m8	44580076	44580098	142	-10.32
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-25-3p	44580908	44580914	7mer-m8	44580907	44580930	149	-18.67
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-25-3p	44580908	44580914	7mer-m8	44580907	44580930	149	-18.67
CAediting_541729	chr7_44580901_-	ENSG00000158604.13	ENST00000481238	hsa-miR-2681-3p	44580900	44580906	7mer-m8	44580899	44580920	153	-14.15
CAediting_541730	chr7_44580904_-	ENSG00000158604.13	ENST00000481238	hsa-miR-2681-3p	44580900	44580906	7mer-m8	44580899	44580920	153	-14.15
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-30b-3p	44580703	44580710	8mer-1a	44580703	44580724	151	-16.71
CAediting_541673	chr7_44580236_-	ENSG00000158604.13	ENST00000481238	hsa-miR-30b-3p	44580235	44580242	8mer-1a	44580235	44580256	143	-16.99
CAediting_541725	chr7_44580871_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3150a-3p	44580871	44580877	7mer-m8	44580870	44580888	148	-28.96
CAediting_541728	chr7_44580891_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3174	44580889	44580894	6mer	44580888	44580908	142	-20.04
CAediting_541694	chr7_44580421_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3174	44580419	44580424	6mer	44580418	44580439	146	-25.96
CAediting_541678	chr7_44580286_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3190-5p	44580285	44580291	7mer-m8	44580284	44580303	147	-18.34
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-32-5p	44580908	44580914	7mer-m8	44580907	44580928	149	-11.51
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-32-5p	44580908	44580914	7mer-m8	44580907	44580928	149	-11.51
CAediting_541696	chr7_44580440_-	ENSG00000158604.13	ENST00000481238	hsa-miR-324-3p	44580436	44580442	7mer-m8	44580435	44580457	148	-24.15
CAediting_541735	chr7_44580945_-	ENSG00000158604.13	ENST00000481238	hsa-miR-340-3p	44580941	44580948	8mer-1a	44580941	44580962	152	-22.14
CAediting_541736	chr7_44580947_-	ENSG00000158604.13	ENST00000481238	hsa-miR-340-3p	44580941	44580948	8mer-1a	44580941	44580962	152	-22.14
CAediting_541711	chr7_44580778_-	ENSG00000158604.13	ENST00000481238	hsa-miR-340-3p	44580775	44580781	7mer-m8	44580774	44580795	149	-18.51
CAediting_541675	chr7_44580252_-	ENSG00000158604.13	ENST00000481238	hsa-miR-34a-5p	44580247	44580253	7mer-m8	44580246	44580267	154	-18.65
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-363-3p	44580908	44580914	7mer-m8	44580907	44580927	143	-11.6
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-363-3p	44580908	44580914	7mer-m8	44580907	44580927	143	-11.6
CAediting_541720	chr7_44580838_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3664-3p	44580837	44580843	7mer-m8	44580836	44580859	154	-20.99
CAediting_541675	chr7_44580252_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3681-5p	44580250	44580256	7mer-m8	44580249	44580267	143	-17.73
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3689a-3p	44580703	44580710	8mer-1a	44580703	44580723	147	-22.03
CAediting_541693	chr7_44580402_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3689a-3p	44580402	44580408	7mer-m8	44580401	44580424	147	-25.93
CAediting_541673	chr7_44580236_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3689a-3p	44580235	44580242	8mer-1a	44580235	44580255	152	-24.07
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3689b-3p	44580703	44580710	8mer-1a	44580703	44580723	147	-20.79
CAediting_541693	chr7_44580402_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3689b-3p	44580402	44580408	7mer-m8	44580401	44580421	150	-26.85
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3689c	44580703	44580710	8mer-1a	44580703	44580723	147	-20.79
CAediting_541693	chr7_44580402_-	ENSG00000158604.13	ENST00000481238	hsa-miR-3689c	44580402	44580408	7mer-m8	44580401	44580421	150	-26.85
CAediting_541736	chr7_44580947_-	ENSG00000158604.13	ENST00000481238	hsa-miR-371b-5p	44580945	44580952	8mer-1a	44580945	44580966	147	-10.65
CAediting_541699	chr7_44580476_-	ENSG00000158604.13	ENST00000481238	hsa-miR-371b-5p	44580474	44580481	8mer-1a	44580474	44580496	145	-11.48
CAediting_541736	chr7_44580947_-	ENSG00000158604.13	ENST00000481238	hsa-miR-373-5p	44580945	44580952	8mer-1a	44580945	44580966	140	-9.43
CAediting_541699	chr7_44580476_-	ENSG00000158604.13	ENST00000481238	hsa-miR-373-5p	44580474	44580481	8mer-1a	44580474	44580495	144	-10.39
CAediting_541726	chr7_44580885_-	ENSG00000158604.13	ENST00000481238	hsa-miR-377-5p	44580881	44580887	7mer-m8	44580880	44580901	155	-17.55
CAediting_541727	chr7_44580886_-	ENSG00000158604.13	ENST00000481238	hsa-miR-377-5p	44580881	44580887	7mer-m8	44580880	44580901	155	-17.55
CAediting_541696	chr7_44580440_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4252	44580435	44580441	7mer-m8	44580434	44580454	150	-21.82
CAediting_541667	chr7_44580079_-	ENSG00000158604.13	ENST00000481238	hsa-miR-429	44580077	44580083	7mer-m8	44580076	44580097	151	-14.31
CAediting_541709	chr7_44580755_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4293	44580751	44580757	7mer-m8	44580750	44580766	145	-19.91
CAediting_541721	chr7_44580847_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4478	44580843	44580849	7mer-m8	44580842	44580857	149	-25.05
CAediting_541705	chr7_44580712_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4478	44580708	44580714	7mer-m8	44580707	44580723	150	-23.72
CAediting_541689	chr7_44580378_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4478	44580374	44580380	7mer-m8	44580373	44580388	149	-25.05
CAediting_541710	chr7_44580764_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4531	44580764	44580770	7mer-m8	44580763	44580779	150	-18.86
CAediting_541721	chr7_44580847_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4649-3p	44580846	44580852	7mer-m8	44580845	44580865	140	-14.11
CAediting_541705	chr7_44580712_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4649-3p	44580711	44580717	7mer-m8	44580710	44580730	147	-15.07
CAediting_541689	chr7_44580378_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4649-3p	44580377	44580383	7mer-m8	44580376	44580396	140	-14.11
CAediting_541677	chr7_44580261_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4649-3p	44580260	44580266	7mer-m8	44580259	44580279	147	-18.42
CAediting_541681	chr7_44580308_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4684-5p	44580308	44580314	7mer-m8	44580307	44580329	155	-15.04
CAediting_541682	chr7_44580312_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4684-5p	44580308	44580314	7mer-m8	44580307	44580329	155	-15.04
CAediting_541670	chr7_44580225_-	ENSG00000158604.13	ENST00000481238	hsa-miR-4733-5p	44580224	44580230	7mer-m8	44580223	44580244	152	-16.57
CAediting_541705	chr7_44580712_-	ENSG00000158604.13	ENST00000481238	hsa-miR-485-5p	44580707	44580713	7mer-m8	44580706	44580728	149	-17.54
CAediting_541674	chr7_44580244_-	ENSG00000158604.13	ENST00000481238	hsa-miR-485-5p	44580239	44580245	7mer-m8	44580238	44580258	154	-17.39
CAediting_541725	chr7_44580871_-	ENSG00000158604.13	ENST00000481238	hsa-miR-490-3p	44580867	44580873	7mer-m8	44580866	44580886	146	-14.82
CAediting_541693	chr7_44580402_-	ENSG00000158604.13	ENST00000481238	hsa-miR-490-3p	44580398	44580404	7mer-m8	44580397	44580419	146	-17.38
CAediting_541733	chr7_44580915_-	ENSG00000158604.13	ENST00000481238	hsa-miR-508-5p	44580913	44580919	7mer-m8	44580912	44580936	155	-24.34
CAediting_541698	chr7_44580474_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514b-5p	44580474	44580479	6mer	44580473	44580494	150	-16.98
CAediting_541699	chr7_44580476_-	ENSG00000158604.13	ENST00000481238	hsa-miR-514b-5p	44580474	44580479	6mer	44580473	44580494	150	-16.98
CAediting_541677	chr7_44580261_-	ENSG00000158604.13	ENST00000481238	hsa-miR-544b	44580259	44580265	7mer-m8	44580258	44580278	153	-16.95
CAediting_541714	chr7_44580791_-	ENSG00000158604.13	ENST00000481238	hsa-miR-548av-5p	44580787	44580793	7mer-m8	44580786	44580803	140	-7.37
CAediting_541714	chr7_44580791_-	ENSG00000158604.13	ENST00000481238	hsa-miR-548k	44580787	44580793	7mer-m8	44580786	44580807	140	-9.65
CAediting_541714	chr7_44580791_-	ENSG00000158604.13	ENST00000481238	hsa-miR-548n	44580785	44580792	8mer-1a	44580785	44580806	140	-6
CAediting_541678	chr7_44580286_-	ENSG00000158604.13	ENST00000481238	hsa-miR-548s	44580286	44580292	7mer-m8	44580285	44580306	143	-12.53
CAediting_541734	chr7_44580935_-	ENSG00000158604.13	ENST00000481238	hsa-miR-5586-3p	44580931	44580937	7mer-m8	44580930	44580951	152	-14.48
CAediting_541719	chr7_44580835_-	ENSG00000158604.13	ENST00000481238	hsa-miR-5690	44580831	44580837	7mer-m8	44580830	44580850	145	-17.72
CAediting_541687	chr7_44580366_-	ENSG00000158604.13	ENST00000481238	hsa-miR-5690	44580362	44580368	7mer-m8	44580361	44580381	145	-16.74
CAediting_541711	chr7_44580778_-	ENSG00000158604.13	ENST00000481238	hsa-miR-593-3p	44580777	44580782	6mer	44580776	44580794	140	-19.38
CAediting_541712	chr7_44580782_-	ENSG00000158604.13	ENST00000481238	hsa-miR-593-3p	44580777	44580782	6mer	44580776	44580794	140	-19.38
CAediting_541674	chr7_44580244_-	ENSG00000158604.13	ENST00000481238	hsa-miR-604	44580241	44580247	7mer-m8	44580240	44580258	149	-22.42
CAediting_541726	chr7_44580885_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6086	44580881	44580887	7mer-m8	44580880	44580899	148	-21.93
CAediting_541727	chr7_44580886_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6086	44580881	44580887	7mer-m8	44580880	44580899	148	-21.93
CAediting_541736	chr7_44580947_-	ENSG00000158604.13	ENST00000481238	hsa-miR-616-5p	44580945	44580952	8mer-1a	44580945	44580966	147	-8.7
CAediting_541699	chr7_44580476_-	ENSG00000158604.13	ENST00000481238	hsa-miR-616-5p	44580474	44580481	8mer-1a	44580474	44580495	142	-6.92
CAediting_541726	chr7_44580885_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6516-5p	44580885	44580891	7mer-m8	44580884	44580907	145	-14.66
CAediting_541727	chr7_44580886_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6516-5p	44580885	44580891	7mer-m8	44580884	44580907	145	-14.66
CAediting_541725	chr7_44580871_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6763-5p	44580871	44580877	7mer-m8	44580870	44580886	150	-25.93
CAediting_541705	chr7_44580712_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6765-5p	44580712	44580718	7mer-m8	44580711	44580735	150	-27.84
CAediting_541707	chr7_44580735_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6771-5p	44580735	44580741	7mer-m8	44580734	44580754	154	-26.53
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6779-5p	44580703	44580710	8mer-1a	44580703	44580721	148	-23.32
CAediting_541673	chr7_44580236_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6779-5p	44580235	44580242	8mer-1a	44580235	44580260	149	-23.71
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6780a-5p	44580703	44580710	8mer-1a	44580703	44580726	152	-21.42
CAediting_541693	chr7_44580402_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6780a-5p	44580402	44580408	7mer-m8	44580401	44580425	147	-23.83
CAediting_541673	chr7_44580236_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6780a-5p	44580235	44580242	8mer-1a	44580235	44580257	150	-24.87
CAediting_541728	chr7_44580891_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6807-5p	44580891	44580897	7mer-m8	44580890	44580911	153	-23.02
CAediting_541735	chr7_44580945_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6827-3p	44580941	44580948	8mer-1a	44580941	44580961	140	-14.67
CAediting_541736	chr7_44580947_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6827-3p	44580941	44580948	8mer-1a	44580941	44580961	140	-14.67
CAediting_541711	chr7_44580778_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6827-3p	44580775	44580781	7mer-m8	44580774	44580794	153	-17.53
CAediting_541675	chr7_44580252_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6849-5p	44580250	44580256	7mer-m8	44580249	44580271	142	-17.2
CAediting_541725	chr7_44580871_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6852-5p	44580869	44580875	7mer-m8	44580868	44580889	147	-22.7
CAediting_541693	chr7_44580402_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6852-5p	44580400	44580405	6mer	44580399	44580419	140	-20.33
CAediting_541705	chr7_44580712_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6884-5p	44580707	44580713	7mer-m8	44580706	44580727	154	-23.23
CAediting_541674	chr7_44580244_-	ENSG00000158604.13	ENST00000481238	hsa-miR-6884-5p	44580239	44580245	7mer-m8	44580238	44580260	153	-20.8
CAediting_541721	chr7_44580847_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7160-5p	44580845	44580851	7mer-m8	44580844	44580864	146	-20.4
CAediting_541705	chr7_44580712_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7160-5p	44580710	44580716	7mer-m8	44580709	44580727	154	-22.76
CAediting_541689	chr7_44580378_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7160-5p	44580376	44580382	7mer-m8	44580375	44580395	146	-20.4
CAediting_541733	chr7_44580915_-	ENSG00000158604.13	ENST00000481238	hsa-miR-766-3p	44580914	44580920	7mer-m8	44580913	44580934	140	-16.92
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7703	44580909	44580916	8mer-1a	44580909	44580931	154	-19.27
CAediting_541733	chr7_44580915_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7703	44580909	44580916	8mer-1a	44580909	44580931	154	-19.27
CAediting_541679	chr7_44580295_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7855-5p	44580295	44580300	6mer	44580294	44580313	141	-22.03
CAediting_541680	chr7_44580298_-	ENSG00000158604.13	ENST00000481238	hsa-miR-7855-5p	44580295	44580300	6mer	44580294	44580313	141	-22.03
CAediting_541714	chr7_44580791_-	ENSG00000158604.13	ENST00000481238	hsa-miR-8054	44580787	44580793	7mer-m8	44580786	44580807	154	-16.2
CAediting_541703	chr7_44580703_-	ENSG00000158604.13	ENST00000481238	hsa-miR-887-5p	44580702	44580709	8mer-1a	44580702	44580721	143	-13.53
CAediting_541704	chr7_44580704_-	ENSG00000158604.13	ENST00000481238	hsa-miR-887-5p	44580702	44580709	8mer-1a	44580702	44580721	143	-13.53
CAediting_541688	chr7_44580369_-	ENSG00000158604.13	ENST00000481238	hsa-miR-887-5p	44580369	44580375	7mer-m8	44580368	44580387	143	-19.73
CAediting_541672	chr7_44580235_-	ENSG00000158604.13	ENST00000481238	hsa-miR-887-5p	44580234	44580241	8mer-1a	44580234	44580255	144	-16.22
CAediting_541673	chr7_44580236_-	ENSG00000158604.13	ENST00000481238	hsa-miR-887-5p	44580234	44580241	8mer-1a	44580234	44580255	144	-16.22
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-92a-3p	44580908	44580914	7mer-m8	44580907	44580924	147	-19.71
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-92a-3p	44580908	44580914	7mer-m8	44580907	44580924	147	-19.71
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-92a-3p	44580908	44580914	7mer-m8	44580907	44580924	147	-19.71
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-92a-3p	44580908	44580914	7mer-m8	44580907	44580924	147	-19.71
CAediting_541731	chr7_44580909_-	ENSG00000158604.13	ENST00000481238	hsa-miR-92b-3p	44580908	44580914	7mer-m8	44580907	44580928	150	-18.38
CAediting_541732	chr7_44580910_-	ENSG00000158604.13	ENST00000481238	hsa-miR-92b-3p	44580908	44580914	7mer-m8	44580907	44580928	150	-18.38

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229415	chr17_67471547_+	ENSG00000158604.13	ENST00000457408	hsa-miR-548aa	44579055	44579061	7mer-m8	44579054	44579080	145	-10.41
CAediting_228905	chr2_188297554_+	ENSG00000158604.13	ENST00000457408	hsa-miR-561-3p	44579171	44579177	7mer-m8	44579170	44579192	145	-7.99
CAediting_396018	chr5_1062918_-	ENSG00000158604.13	ENST00000457408	hsa-miR-4635	44578526	44578532	7mer-m8	44578525	44578543	162	-26.83
CAediting_580943	chr7_100356700_+	ENSG00000158604.13	ENST00000457408	hsa-miR-6840-3p	44578788	44578794	7mer-m8	44578787	44578808	140	-23.95
CAediting_1229415	chr17_67471547_+	ENSG00000158604.13	ENST00000289577	hsa-miR-548aa	44579055	44579061	7mer-m8	44579054	44579080	145	-10.41
CAediting_228905	chr2_188297554_+	ENSG00000158604.13	ENST00000289577	hsa-miR-561-3p	44579171	44579177	7mer-m8	44579170	44579192	145	-7.99
CAediting_396018	chr5_1062918_-	ENSG00000158604.13	ENST00000289577	hsa-miR-4635	44578526	44578532	7mer-m8	44578525	44578543	162	-26.83
CAediting_580943	chr7_100356700_+	ENSG00000158604.13	ENST00000289577	hsa-miR-6840-3p	44578788	44578794	7mer-m8	44578787	44578808	140	-23.95
CAediting_1229414	chr17_67471546_+	ENSG00000158604.13	ENST00000481238	hsa-miR-548aa	44580276	44580282	7mer-m8	44580275	44580299	140	-12.74
CAediting_1368054	chr19_46709310_-	ENSG00000158604.13	ENST00000481238	hsa-miR-320e	44580533	44580539	7mer-m8	44580532	44580548	147	-19.31

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_396018	chr5_1062918_-	ENSG00000158604.13	ENST00000457408	hsa-miR-4635	44578366	44578372	7mer-m8	44578365	44578383	148	-12.19
CAediting_396018	chr5_1062918_-	ENSG00000158604.13	ENST00000289577	hsa-miR-4635	44578366	44578372	7mer-m8	44578365	44578383	148	-12.19

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for TMED4

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000289577.8	protein_coding
ENST00000457408.5	protein_coding
ENST00000477639.4	retained_intron
ENST00000481238.1	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_541656	ENST00000289577.8	chr7_44578663_-	-713.10	-711.70	-736.90
CAediting_541657	ENST00000289577.8	chr7_44578700_-	-712.70	-711.70	-736.90
CAediting_541658	ENST00000289577.8	chr7_44578703_-	-711.90	-711.70	-736.90
CAediting_541659	ENST00000289577.8	chr7_44578718_-	-713.90	-711.70	-736.90
CAediting_541660	ENST00000289577.8	chr7_44578742_-	-713.30	-711.70	-736.90
CAediting_541661	ENST00000289577.8	chr7_44578744_-	-711.80	-711.70	-736.90
CAediting_541662	ENST00000289577.8	chr7_44578754_-	-712.70	-711.70	-736.90
CAediting_541663	ENST00000289577.8	chr7_44578810_-	-714.30	-711.70	-736.90
CAediting_541664	ENST00000289577.8	chr7_44578815_-	-715.10	-711.70	-736.90
CAediting_541665	ENST00000289577.8	chr7_44578841_-	-712.60	-711.70	-736.90
CAediting_541666	ENST00000289577.8	chr7_44578860_-	-714.50	-711.70	-736.90
CAediting_541656	ENST00000457408.5	chr7_44578663_-	-751.00	-749.50	-770.30
CAediting_541657	ENST00000457408.5	chr7_44578700_-	-750.50	-749.50	-770.30
CAediting_541658	ENST00000457408.5	chr7_44578703_-	-749.70	-749.50	-770.30
CAediting_541659	ENST00000457408.5	chr7_44578718_-	-751.70	-749.50	-770.30
CAediting_541660	ENST00000457408.5	chr7_44578742_-	-750.50	-749.50	-770.30
CAediting_541661	ENST00000457408.5	chr7_44578744_-	-748.50	-749.50	-770.30
CAediting_541662	ENST00000457408.5	chr7_44578754_-	-750.50	-749.50	-770.30
CAediting_541663	ENST00000457408.5	chr7_44578810_-	-752.00	-749.50	-770.30
CAediting_541664	ENST00000457408.5	chr7_44578815_-	-752.80	-749.50	-770.30
CAediting_541665	ENST00000457408.5	chr7_44578841_-	-750.50	-749.50	-770.30
CAediting_541666	ENST00000457408.5	chr7_44578860_-	-749.70	-749.50	-770.30
CAediting_541667	ENST00000477639.4	chr7_44580079_-	-697.10	-695.50	-776.90
CAediting_541668	ENST00000477639.4	chr7_44580220_-	-695.40	-695.50	-776.90
CAediting_541669	ENST00000477639.4	chr7_44580222_-	-697.00	-695.50	-776.90
CAediting_541670	ENST00000477639.4	chr7_44580225_-	-695.40	-695.50	-776.90
CAediting_541671	ENST00000477639.4	chr7_44580234_-	-696.40	-695.50	-776.90
CAediting_541672	ENST00000477639.4	chr7_44580235_-	-695.20	-695.50	-776.90
CAediting_541673	ENST00000477639.4	chr7_44580236_-	-695.20	-695.50	-776.90
CAediting_541674	ENST00000477639.4	chr7_44580244_-	-696.20	-695.50	-776.90
CAediting_541675	ENST00000477639.4	chr7_44580252_-	-695.50	-695.50	-776.90
CAediting_541676	ENST00000477639.4	chr7_44580257_-	-694.80	-695.50	-776.90
CAediting_541677	ENST00000477639.4	chr7_44580261_-	-695.70	-695.50	-776.90
CAediting_541678	ENST00000477639.4	chr7_44580286_-	-694.80	-695.50	-776.90
CAediting_541679	ENST00000477639.4	chr7_44580295_-	-695.50	-695.50	-776.90
CAediting_541680	ENST00000477639.4	chr7_44580298_-	-698.60	-695.50	-776.90
CAediting_541681	ENST00000477639.4	chr7_44580308_-	-699.10	-695.50	-776.90
CAediting_541682	ENST00000477639.4	chr7_44580312_-	-697.90	-695.50	-776.90
CAediting_541683	ENST00000477639.4	chr7_44580315_-	-697.40	-695.50	-776.90
CAediting_541684	ENST00000477639.4	chr7_44580350_-	-696.30	-695.50	-776.90
CAediting_541685	ENST00000477639.4	chr7_44580354_-	-699.30	-695.50	-776.90
CAediting_541686	ENST00000477639.4	chr7_44580356_-	-700.40	-695.50	-776.90
CAediting_541687	ENST00000477639.4	chr7_44580366_-	-698.70	-695.50	-776.90
CAediting_541688	ENST00000477639.4	chr7_44580369_-	-699.10	-695.50	-776.90
CAediting_541689	ENST00000477639.4	chr7_44580378_-	-696.50	-695.50	-776.90
CAediting_541690	ENST00000477639.4	chr7_44580391_-	-694.10	-695.50	-776.90
CAediting_541691	ENST00000477639.4	chr7_44580395_-	-697.90	-695.50	-776.90
CAediting_541692	ENST00000477639.4	chr7_44580396_-	-697.60	-695.50	-776.90
CAediting_541693	ENST00000477639.4	chr7_44580402_-	-699.60	-695.50	-776.90
CAediting_541694	ENST00000477639.4	chr7_44580421_-	-695.10	-695.50	-776.90
CAediting_541695	ENST00000477639.4	chr7_44580431_-	-696.70	-695.50	-776.90
CAediting_541696	ENST00000477639.4	chr7_44580440_-	-694.80	-695.50	-776.90
CAediting_541697	ENST00000477639.4	chr7_44580470_-	-694.60	-695.50	-776.90
CAediting_541698	ENST00000477639.4	chr7_44580474_-	-698.50	-695.50	-776.90
CAediting_541699	ENST00000477639.4	chr7_44580476_-	-697.20	-695.50	-776.90
CAediting_541700	ENST00000477639.4	chr7_44580688_-	-698.40	-695.50	-776.90
CAediting_541701	ENST00000477639.4	chr7_44580690_-	-697.40	-695.50	-776.90
CAediting_541702	ENST00000477639.4	chr7_44580702_-	-696.70	-695.50	-776.90
CAediting_541703	ENST00000477639.4	chr7_44580703_-	-698.20	-695.50	-776.90
CAediting_541704	ENST00000477639.4	chr7_44580704_-	-694.80	-695.50	-776.90
CAediting_541705	ENST00000477639.4	chr7_44580712_-	-696.50	-695.50	-776.90
CAediting_541706	ENST00000477639.4	chr7_44580730_-	-696.80	-695.50	-776.90
CAediting_541707	ENST00000477639.4	chr7_44580735_-	-695.70	-695.50	-776.90
CAediting_541708	ENST00000477639.4	chr7_44580742_-	-698.60	-695.50	-776.90
CAediting_541709	ENST00000477639.4	chr7_44580755_-	-696.20	-695.50	-776.90
CAediting_541710	ENST00000477639.4	chr7_44580764_-	-697.50	-695.50	-776.90
CAediting_541711	ENST00000477639.4	chr7_44580778_-	-701.00	-695.50	-776.90
CAediting_541712	ENST00000477639.4	chr7_44580782_-	-698.80	-695.50	-776.90
CAediting_541713	ENST00000477639.4	chr7_44580785_-	-697.60	-695.50	-776.90
CAediting_541714	ENST00000477639.4	chr7_44580791_-	-695.50	-695.50	-776.90
CAediting_541715	ENST00000477639.4	chr7_44580798_-	-694.40	-695.50	-776.90
CAediting_541716	ENST00000477639.4	chr7_44580812_-	-695.70	-695.50	-776.90
CAediting_541717	ENST00000477639.4	chr7_44580823_-	-695.30	-695.50	-776.90
CAediting_541718	ENST00000477639.4	chr7_44580825_-	-699.60	-695.50	-776.90
CAediting_541719	ENST00000477639.4	chr7_44580835_-	-697.80	-695.50	-776.90
CAediting_541720	ENST00000477639.4	chr7_44580838_-	-696.80	-695.50	-776.90
CAediting_541721	ENST00000477639.4	chr7_44580847_-	-695.40	-695.50	-776.90
CAediting_541722	ENST00000477639.4	chr7_44580860_-	-696.40	-695.50	-776.90
CAediting_541723	ENST00000477639.4	chr7_44580864_-	-697.60	-695.50	-776.90
CAediting_541724	ENST00000477639.4	chr7_44580865_-	-696.10	-695.50	-776.90
CAediting_541725	ENST00000477639.4	chr7_44580871_-	-697.90	-695.50	-776.90
CAediting_541726	ENST00000477639.4	chr7_44580885_-	-695.50	-695.50	-776.90
CAediting_541727	ENST00000477639.4	chr7_44580886_-	-694.80	-695.50	-776.90
CAediting_541728	ENST00000477639.4	chr7_44580891_-	-696.60	-695.50	-776.90
CAediting_541729	ENST00000477639.4	chr7_44580901_-	-695.50	-695.50	-776.90
CAediting_541730	ENST00000477639.4	chr7_44580904_-	-696.80	-695.50	-776.90
CAediting_541731	ENST00000477639.4	chr7_44580909_-	-699.80	-695.50	-776.90
CAediting_541732	ENST00000477639.4	chr7_44580910_-	-695.60	-695.50	-776.90
CAediting_541733	ENST00000477639.4	chr7_44580915_-	-696.20	-695.50	-776.90
CAediting_541734	ENST00000477639.4	chr7_44580935_-	-697.80	-695.50	-776.90
CAediting_541735	ENST00000477639.4	chr7_44580945_-	-701.60	-695.50	-776.90
CAediting_541736	ENST00000477639.4	chr7_44580947_-	-696.50	-695.50	-776.90
CAediting_541667	ENST00000481238.1	chr7_44580079_-	-581.70	-579.60	-666.30
CAediting_541668	ENST00000481238.1	chr7_44580220_-	-581.60	-579.60	-666.30
CAediting_541669	ENST00000481238.1	chr7_44580222_-	-582.20	-579.60	-666.30
CAediting_541670	ENST00000481238.1	chr7_44580225_-	-579.40	-579.60	-666.30
CAediting_541671	ENST00000481238.1	chr7_44580234_-	-580.50	-579.60	-666.30
CAediting_541672	ENST00000481238.1	chr7_44580235_-	-581.40	-579.60	-666.30
CAediting_541673	ENST00000481238.1	chr7_44580236_-	-579.30	-579.60	-666.30
CAediting_541674	ENST00000481238.1	chr7_44580244_-	-581.70	-579.60	-666.30
CAediting_541675	ENST00000481238.1	chr7_44580252_-	-580.50	-579.60	-666.30
CAediting_541676	ENST00000481238.1	chr7_44580257_-	-578.90	-579.60	-666.30
CAediting_541677	ENST00000481238.1	chr7_44580261_-	-579.90	-579.60	-666.30
CAediting_541678	ENST00000481238.1	chr7_44580286_-	-580.50	-579.60	-666.30
CAediting_541679	ENST00000481238.1	chr7_44580295_-	-579.90	-579.60	-666.30
CAediting_541680	ENST00000481238.1	chr7_44580298_-	-582.30	-579.60	-666.30
CAediting_541681	ENST00000481238.1	chr7_44580308_-	-584.30	-579.60	-666.30
CAediting_541682	ENST00000481238.1	chr7_44580312_-	-583.90	-579.60	-666.30
CAediting_541683	ENST00000481238.1	chr7_44580315_-	-582.60	-579.60	-666.30
CAediting_541684	ENST00000481238.1	chr7_44580350_-	-581.50	-579.60	-666.30
CAediting_541685	ENST00000481238.1	chr7_44580354_-	-583.70	-579.60	-666.30
CAediting_541686	ENST00000481238.1	chr7_44580356_-	-584.10	-579.60	-666.30
CAediting_541687	ENST00000481238.1	chr7_44580366_-	-583.90	-579.60	-666.30
CAediting_541688	ENST00000481238.1	chr7_44580369_-	-583.10	-579.60	-666.30
CAediting_541689	ENST00000481238.1	chr7_44580378_-	-580.50	-579.60	-666.30
CAediting_541690	ENST00000481238.1	chr7_44580391_-	-578.20	-579.60	-666.30
CAediting_541691	ENST00000481238.1	chr7_44580395_-	-582.00	-579.60	-666.30
CAediting_541692	ENST00000481238.1	chr7_44580396_-	-581.70	-579.60	-666.30
CAediting_541693	ENST00000481238.1	chr7_44580402_-	-583.70	-579.60	-666.30
CAediting_541694	ENST00000481238.1	chr7_44580421_-	-579.20	-579.60	-666.30
CAediting_541695	ENST00000481238.1	chr7_44580431_-	-580.80	-579.60	-666.30
CAediting_541696	ENST00000481238.1	chr7_44580440_-	-578.90	-579.60	-666.30
CAediting_541697	ENST00000481238.1	chr7_44580470_-	-578.70	-579.60	-666.30
CAediting_541698	ENST00000481238.1	chr7_44580474_-	-583.50	-579.60	-666.30
CAediting_541699	ENST00000481238.1	chr7_44580476_-	-581.00	-579.60	-666.30
CAediting_541700	ENST00000481238.1	chr7_44580688_-	-583.60	-579.60	-666.30
CAediting_541701	ENST00000481238.1	chr7_44580690_-	-581.70	-579.60	-666.30
CAediting_541702	ENST00000481238.1	chr7_44580702_-	-581.90	-579.60	-666.30
CAediting_541703	ENST00000481238.1	chr7_44580703_-	-582.30	-579.60	-666.30
CAediting_541704	ENST00000481238.1	chr7_44580704_-	-580.00	-579.60	-666.30
CAediting_541705	ENST00000481238.1	chr7_44580712_-	-580.60	-579.60	-666.30
CAediting_541706	ENST00000481238.1	chr7_44580730_-	-582.00	-579.60	-666.30
CAediting_541707	ENST00000481238.1	chr7_44580735_-	-580.90	-579.60	-666.30
CAediting_541708	ENST00000481238.1	chr7_44580742_-	-583.80	-579.60	-666.30
CAediting_541709	ENST00000481238.1	chr7_44580755_-	-581.40	-579.60	-666.30
CAediting_541710	ENST00000481238.1	chr7_44580764_-	-581.60	-579.60	-666.30
CAediting_541711	ENST00000481238.1	chr7_44580778_-	-585.60	-579.60	-666.30
CAediting_541712	ENST00000481238.1	chr7_44580782_-	-582.90	-579.60	-666.30
CAediting_541713	ENST00000481238.1	chr7_44580785_-	-581.70	-579.60	-666.30
CAediting_541714	ENST00000481238.1	chr7_44580791_-	-579.60	-579.60	-666.30
CAediting_541715	ENST00000481238.1	chr7_44580798_-	-579.40	-579.60	-666.30
CAediting_541716	ENST00000481238.1	chr7_44580812_-	-579.80	-579.60	-666.30
CAediting_541717	ENST00000481238.1	chr7_44580823_-	-580.50	-579.60	-666.30
CAediting_541718	ENST00000481238.1	chr7_44580825_-	-584.30	-579.60	-666.30
CAediting_541719	ENST00000481238.1	chr7_44580835_-	-582.60	-579.60	-666.30
CAediting_541720	ENST00000481238.1	chr7_44580838_-	-582.00	-579.60	-666.30
CAediting_541721	ENST00000481238.1	chr7_44580847_-	-580.60	-579.60	-666.30
CAediting_541722	ENST00000481238.1	chr7_44580860_-	-581.00	-579.60	-666.30
CAediting_541723	ENST00000481238.1	chr7_44580864_-	-582.80	-579.60	-666.30
CAediting_541724	ENST00000481238.1	chr7_44580865_-	-581.30	-579.60	-666.30
CAediting_541725	ENST00000481238.1	chr7_44580871_-	-583.10	-579.60	-666.30
CAediting_541726	ENST00000481238.1	chr7_44580885_-	-580.30	-579.60	-666.30
CAediting_541727	ENST00000481238.1	chr7_44580886_-	-578.90	-579.60	-666.30
CAediting_541728	ENST00000481238.1	chr7_44580891_-	-580.70	-579.60	-666.30
CAediting_541729	ENST00000481238.1	chr7_44580901_-	-580.70	-579.60	-666.30
CAediting_541730	ENST00000481238.1	chr7_44580904_-	-582.00	-579.60	-666.30
CAediting_541731	ENST00000481238.1	chr7_44580909_-	-583.90	-579.60	-666.30
CAediting_541732	ENST00000481238.1	chr7_44580910_-	-581.70	-579.60	-666.30
CAediting_541733	ENST00000481238.1	chr7_44580915_-	-581.40	-579.60	-666.30
CAediting_541734	ENST00000481238.1	chr7_44580935_-	-583.00	-579.60	-666.30
CAediting_541735	ENST00000481238.1	chr7_44580945_-	-586.80	-579.60	-666.30
CAediting_541736	ENST00000481238.1	chr7_44580947_-	-581.70	-579.60	-666.30

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Relation with ADAR for TMED4

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
LGG	CAediting_541701	chr7_44580690_-	0.0480297050035511	0.212612951330114	.	.	.	.
ESCA	CAediting_541701	chr7_44580690_-	.	.	0.0313042471484492	0.228439252815239	.	.
ESCA	CAediting_541702	chr7_44580702_-	.	.	0.00580195331101306	0.377482456068632	.	.
ESCA	CAediting_541703	chr7_44580703_-	.	.	0.0351613753526365	0.295668096354188	.	.

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Relation with cancer stages for TMED4

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_541731	chr7_44580909_-	0.0495360654658939	0.244629423079129

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Relation with survival for TMED4

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for TMED4

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TMED4

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene