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Editing gene: HNRNPA3 (CAeditome ID:220988)

Gene summary for HNRNPA3

Gene summary

Gene information	Gene symbol	HNRNPA3
	Gene ID	220988
	Gene name	heterogeneous nuclear ribonucleoprotein A3
	Synonyms	2610510D13Rik\|D10S102\|FBRNP\|HNRPA3
	Cytomap	2q31.2
	Type of gene	protein-coding
	Description	heterogeneous nuclear ribonucleoprotein A3epididymis secretory sperm binding protein
	Modification date	20210518
	UniProtAcc	P51991
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
HNRNPA3	GO:0005634	Heterogeneous nuclear ribonucleoprotein A3	22720776
HNRNPA3	GO:0005654	Heterogeneous nuclear ribonucleoprotein A3	0000052
HNRNPA3	GO:0071013	Heterogeneous nuclear ribonucleoprotein A3	11991638

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RNA A-to-I events for HNRNPA3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000170144.17

RNA A-to-I editing events in Cancer.

CAediting_227076(177214540, +), CAediting_227077(177214541, +), CAediting_227078(177215177, +), CAediting_227079(177215224, +), CAediting_227080(177215234, +), CAediting_227081(177215236, +), CAediting_227082(177217453, +), CAediting_227083(177217522, +), CAediting_227084(177217527, +), CAediting_227085(177218191, +), CAediting_227086(177218293, +), CAediting_227087(177219829, +), CAediting_227088(177219915, +), CAediting_227089(177219922, +), CAediting_227090(177219923, +), CAediting_227091(177219976, +), CAediting_227092(177220944, +), CAediting_227093(177221133, +), CAediting_227094(177221795, +), CAediting_227095(177221837, +), CAediting_227096(177221875, +), CAediting_227097(177222318, +), CAediting_227098(177222334, +), CAediting_227099(177222504, +), CAediting_227100(177222505, +), CAediting_227101(177222517, +), CAediting_227102(177222521, +), CAediting_227103(177222524, +), CAediting_227104(177222530, +), CAediting_227105(177222553, +), CAediting_227106(177222558, +), CAediting_227107(177222599, +), CAediting_227108(177222600, +), CAediting_227109(177222605, +), CAediting_227110(177222607, +), CAediting_227111(177222644, +), CAediting_227112(177222648, +), CAediting_227113(177222650, +), CAediting_227114(177222651, +), CAediting_227115(177222683, +), CAediting_227116(177222779, +), CAediting_227117(177223114, +), CAediting_227118(177223122, +), CAediting_227119(177223184, +), CAediting_227120(177223220, +), CAediting_227121(177223286, +), CAediting_227122(177223602, +),

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RNA editing positional annotations for HNRNPA3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_227076	chr2_177214540_+	intronic
CAediting_227077	chr2_177214541_+	intronic
CAediting_227078	chr2_177215177_+	intronic
CAediting_227079	chr2_177215224_+	intronic
CAediting_227080	chr2_177215234_+	intronic
CAediting_227081	chr2_177215236_+	intronic
CAediting_227082	chr2_177217453_+	intronic
CAediting_227083	chr2_177217522_+	intronic
CAediting_227084	chr2_177217527_+	intronic
CAediting_227085	chr2_177218191_+	intronic
CAediting_227086	chr2_177218293_+	intronic
CAediting_227087	chr2_177219829_+	UTR3
CAediting_227088	chr2_177219915_+	UTR3
CAediting_227089	chr2_177219922_+	UTR3
CAediting_227090	chr2_177219923_+	UTR3
CAediting_227091	chr2_177219976_+	UTR3
CAediting_227092	chr2_177220944_+	UTR3
CAediting_227093	chr2_177221133_+	UTR3
CAediting_227094	chr2_177221795_+	UTR3
CAediting_227095	chr2_177221837_+	UTR3
CAediting_227096	chr2_177221875_+	UTR3
CAediting_227097	chr2_177222318_+	UTR3
CAediting_227098	chr2_177222334_+	UTR3
CAediting_227099	chr2_177222504_+	UTR3
CAediting_227100	chr2_177222505_+	UTR3
CAediting_227101	chr2_177222517_+	UTR3
CAediting_227102	chr2_177222521_+	UTR3
CAediting_227103	chr2_177222524_+	UTR3
CAediting_227104	chr2_177222530_+	UTR3
CAediting_227105	chr2_177222553_+	UTR3
CAediting_227106	chr2_177222558_+	UTR3
CAediting_227107	chr2_177222599_+	UTR3
CAediting_227108	chr2_177222600_+	UTR3
CAediting_227109	chr2_177222605_+	UTR3
CAediting_227110	chr2_177222607_+	UTR3
CAediting_227111	chr2_177222644_+	UTR3
CAediting_227112	chr2_177222648_+	UTR3
CAediting_227113	chr2_177222650_+	UTR3
CAediting_227114	chr2_177222651_+	UTR3
CAediting_227115	chr2_177222683_+	UTR3
CAediting_227116	chr2_177222779_+	UTR3
CAediting_227117	chr2_177223114_+	UTR3
CAediting_227118	chr2_177223122_+	UTR3
CAediting_227119	chr2_177223184_+	UTR3
CAediting_227120	chr2_177223220_+	UTR3
CAediting_227121	chr2_177223286_+	UTR3
CAediting_227122	chr2_177223602_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_227076	chr2_177214540_+	SINE	Alu	AluY
CAediting_227077	chr2_177214541_+	SINE	Alu	AluY
CAediting_227078	chr2_177215177_+	SINE	Alu	AluSq2
CAediting_227079	chr2_177215224_+	SINE	Alu	AluSq2
CAediting_227080	chr2_177215234_+	SINE	Alu	AluSq2
CAediting_227081	chr2_177215236_+	SINE	Alu	AluSq2
CAediting_227082	chr2_177217453_+	SINE	Alu	AluJr
CAediting_227083	chr2_177217522_+	SINE	Alu	AluJr
CAediting_227084	chr2_177217527_+	SINE	Alu	AluJr
CAediting_227085	chr2_177218191_+	SINE	Alu	AluSc8
CAediting_227086	chr2_177218293_+	SINE	Alu	AluSc8
CAediting_227104	chr2_177222530_+	SINE	Alu	AluJb
CAediting_227105	chr2_177222553_+	SINE	Alu	AluJb
CAediting_227106	chr2_177222558_+	SINE	Alu	AluJb
CAediting_227107	chr2_177222599_+	SINE	Alu	AluJb
CAediting_227108	chr2_177222600_+	SINE	Alu	AluJb
CAediting_227109	chr2_177222605_+	SINE	Alu	AluJb
CAediting_227110	chr2_177222607_+	SINE	Alu	AluJb
CAediting_227111	chr2_177222644_+	SINE	Alu	AluJb
CAediting_227112	chr2_177222648_+	SINE	Alu	AluJb
CAediting_227113	chr2_177222650_+	SINE	Alu	AluJb
CAediting_227114	chr2_177222651_+	SINE	Alu	AluJb
CAediting_227115	chr2_177222683_+	SINE	Alu	AluJb
CAediting_227116	chr2_177222779_+	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for HNRNPA3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000170144.17.HNRNPA3.

Correlation between RNA A-to-I editing and PSI for ENSG00000170144.17.HNRNPA3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HNRNPA3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HNRNPA3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for HNRNPA3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_227090	chr2_177219923_+	ENSG00000170144.17	ENST00000392524	hsa-miR-600	177219916	177219922	7mer-m8	177219901	177219923	144.00	-12.82
CAediting_227090	chr2_177219923_+	ENSG00000170144.17	ENST00000411529	hsa-miR-600	177219916	177219922	7mer-m8	177219901	177219923	144.00	-12.82
CAediting_227095	chr2_177221837_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4272	177221833	177221839	7mer-m8	177221823	177221840	160.00	-15.52
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000392524	hsa-miR-4325	177219826	177219832	7mer-m8	177219815	177219833	147.00	-12.94
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000392524	hsa-miR-4793-3p	177219827	177219833	7mer-m8	177219809	177219834	149.00	-19.96
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4325	177219826	177219832	7mer-m8	177219815	177219833	147.00	-12.94
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4793-3p	177219827	177219833	7mer-m8	177219809	177219834	149.00	-19.96
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000435711	hsa-miR-4325	177219826	177219832	7mer-m8	177219815	177219833	147.00	-12.94
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000435711	hsa-miR-4793-3p	177219827	177219833	7mer-m8	177219809	177219834	149.00	-19.96
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000392524	hsa-miR-139-5p	177219915	177219922	8mer-1a	177219900	177219922	146.00	-12.68
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000392524	hsa-miR-4684-5p	177219918	177219925	8mer-1a	177219899	177219925	158.00	-15.17
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000392524	hsa-miR-519a-2-5p	177219917	177219924	8mer-1a	177219904	177219924	149.00	-14.38
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000392524	hsa-miR-520b-5p	177219917	177219924	8mer-1a	177219904	177219924	149.00	-14.38
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000411529	hsa-miR-139-5p	177219915	177219922	8mer-1a	177219900	177219922	146.00	-12.68
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4684-5p	177219918	177219925	8mer-1a	177219899	177219925	158.00	-15.17
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000411529	hsa-miR-519a-2-5p	177219917	177219924	8mer-1a	177219904	177219924	149.00	-14.38
CAediting_227089	chr2_177219922_+	ENSG00000170144.17	ENST00000411529	hsa-miR-520b-5p	177219917	177219924	8mer-1a	177219904	177219924	149.00	-14.38
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000392524	hsa-miR-135a-5p	177219973	177219979	7mer-m8	177219958	177219980	140.00	-10.09
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000392524	hsa-miR-135a-5p	177219973	177219979	7mer-m8	177219958	177219980	140.00	-10.09
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000392524	hsa-miR-135b-5p	177219973	177219979	7mer-m8	177219958	177219980	140.00	-11.27
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000411529	hsa-miR-135a-5p	177219973	177219979	7mer-m8	177219958	177219980	140.00	-10.09
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000411529	hsa-miR-135a-5p	177219973	177219979	7mer-m8	177219958	177219980	140.00	-10.09
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000411529	hsa-miR-135b-5p	177219973	177219979	7mer-m8	177219958	177219980	140.00	-11.27
CAediting_227092	chr2_177220944_+	ENSG00000170144.17	ENST00000411529	hsa-miR-3140-5p	177220938	177220944	7mer-m8	177220927	177220945	147.00	-11.95
CAediting_227092	chr2_177220944_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4680-3p	177220937	177220943	7mer-m8	177220926	177220944	145.00	-10.07
CAediting_227093	chr2_177221133_+	ENSG00000170144.17	ENST00000411529	hsa-miR-29b-1-5p	177221126	177221132	7mer-m8	177221113	177221133	145.00	-13.62
CAediting_227093	chr2_177221133_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4699-3p	177221131	177221137	7mer-m8	177221112	177221138	141.00	-4.63
CAediting_227096	chr2_177221875_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4722-3p	177221873	177221880	8mer-1a	177221860	177221880	152.00	-18.77
CAediting_227096	chr2_177221875_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6727-3p	177221873	177221880	8mer-1a	177221859	177221880	148.00	-18.44
CAediting_227097	chr2_177222318_+	ENSG00000170144.17	ENST00000411529	hsa-miR-3187-3p	177222315	177222321	7mer-m8	177222303	177222322	145.00	-18.95
CAediting_227100	chr2_177222505_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4635	177222498	177222504	7mer-m8	177222485	177222505	140.00	-11.44
CAediting_227100	chr2_177222505_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4755-5p	177222502	177222508	7mer-m8	177222488	177222509	145.00	-11.96
CAediting_227100	chr2_177222505_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4780	177222500	177222507	8mer-1a	177222485	177222507	155.00	-22.13
CAediting_227100	chr2_177222505_+	ENSG00000170144.17	ENST00000411529	hsa-miR-5006-3p	177222502	177222508	7mer-m8	177222489	177222509	140.00	-9.55
CAediting_227100	chr2_177222505_+	ENSG00000170144.17	ENST00000411529	hsa-miR-623	177222501	177222508	8mer-1a	177222486	177222508	159.00	-18.31
CAediting_227100	chr2_177222505_+	ENSG00000170144.17	ENST00000411529	hsa-miR-642b-5p	177222503	177222510	8mer-1a	177222492	177222510	147.00	-14.27
CAediting_227102	chr2_177222521_+	ENSG00000170144.17	ENST00000411529	hsa-miR-3128	177222518	177222524	7mer-m8	177222503	177222525	145.00	-12.69
CAediting_227102	chr2_177222521_+	ENSG00000170144.17	ENST00000411529	hsa-miR-891b	177222515	177222521	7mer-m8	177222501	177222522	140.00	-9.65
CAediting_227103	chr2_177222524_+	ENSG00000170144.17	ENST00000411529	hsa-miR-10396a-3p	177222521	177222527	7mer-m8	177222508	177222528	141.00	-25.62
CAediting_227103	chr2_177222524_+	ENSG00000170144.17	ENST00000411529	hsa-miR-10396b-3p	177222521	177222527	7mer-m8	177222507	177222528	141.00	-22.08
CAediting_227105	chr2_177222553_+	ENSG00000170144.17	ENST00000411529	hsa-miR-8052	177222551	177222557	7mer-1a	177222539	177222557	140.00	-24.15
CAediting_227106	chr2_177222558_+	ENSG00000170144.17	ENST00000411529	hsa-miR-371a-3p	177222556	177222562	7mer-m8	177222541	177222563	145.00	-17.36
CAediting_227107	chr2_177222599_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4308	177222592	177222599	8mer-1a	177222582	177222599	147.00	-17.26
CAediting_227107	chr2_177222599_+	ENSG00000170144.17	ENST00000411529	hsa-miR-605-5p	177222596	177222602	7mer-m8	177222582	177222603	146.00	-17.46
CAediting_227111	chr2_177222644_+	ENSG00000170144.17	ENST00000411529	hsa-miR-26a-1-3p	177222642	177222649	8mer-1a	177222627	177222649	162.00	-14.51
CAediting_227111	chr2_177222644_+	ENSG00000170144.17	ENST00000411529	hsa-miR-26a-2-3p	177222642	177222649	8mer-1a	177222627	177222649	155.00	-11.84
CAediting_227111	chr2_177222644_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6844	177222638	177222645	8mer-1a	177222624	177222645	146.00	-13.72
CAediting_227112	chr2_177222648_+	ENSG00000170144.17	ENST00000411529	hsa-miR-153-5p	177222641	177222647	7mer-m8	177222630	177222648	151.00	-13.65
CAediting_227117	chr2_177223114_+	ENSG00000170144.17	ENST00000411529	hsa-miR-506-5p	177223111	177223116	6mer	177223096	177223117	140.00	-11.04
CAediting_227117	chr2_177223114_+	ENSG00000170144.17	ENST00000411529	hsa-miR-892c-5p	177223110	177223116	7mer-m8	177223097	177223117	150.00	-10.68
CAediting_227099	chr2_177222504_+	ENSG00000170144.17	ENST00000411529	hsa-miR-146a-3p	177222499	177222505	7mer-m8	177222485	177222506	151.00	-18.58
CAediting_227099	chr2_177222504_+	ENSG00000170144.17	ENST00000411529	hsa-miR-3059-5p	177222502	177222508	7mer-m8	177222486	177222509	140.00	-16.19
CAediting_227099	chr2_177222504_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6780a-3p	177222501	177222508	8mer-1a	177222486	177222508	150.00	-20.84
CAediting_227115	chr2_177222683_+	ENSG00000170144.17	ENST00000411529	hsa-miR-140-3p	177222678	177222684	7mer-m8	177222662	177222685	153.00	-21.26
CAediting_227120	chr2_177223220_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4777-3p	177223218	177223225	8mer-1a	177223204	177223225	162.00	-19.58
CAediting_227120	chr2_177223220_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6758-3p	177223215	177223221	7mer-m8	177223202	177223222	143.00	-11.81

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000392524	hsa-miR-20a-3p	177219827	177219833	7mer-m8	177219813	177219834	147	-14.53
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000392524	hsa-miR-6740-5p	177219971	177219976	6mer	177219955	177219977	155	-23.47
CAediting_227105	chr2_177222553_+	ENSG00000170144.17	ENST00000411529	hsa-miR-10399-5p	177222547	177222553	7mer-m8	177222533	177222554	144	-10.39
CAediting_227122	chr2_177223602_+	ENSG00000170144.17	ENST00000411529	hsa-miR-126-5p	177223596	177223602	7mer-m8	177223582	177223603	153	-8.58
CAediting_227104	chr2_177222530_+	ENSG00000170144.17	ENST00000411529	hsa-miR-1271-3p	177222528	177222535	8mer-1a	177222513	177222535	144	-17.49
CAediting_227103	chr2_177222524_+	ENSG00000170144.17	ENST00000411529	hsa-miR-1291	177222522	177222529	8mer-1a	177222506	177222529	140	-20.32
CAediting_227097	chr2_177222318_+	ENSG00000170144.17	ENST00000411529	hsa-miR-138-2-3p	177222312	177222318	7mer-m8	177222298	177222319	143	-16.07
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000411529	hsa-miR-20a-3p	177219827	177219833	7mer-m8	177219813	177219834	147	-14.53
CAediting_227119	chr2_177223184_+	ENSG00000170144.17	ENST00000411529	hsa-miR-3121-3p	177223180	177223187	8mer-1a	177223166	177223187	152	-13.68
CAediting_227117	chr2_177223114_+	ENSG00000170144.17	ENST00000411529	hsa-miR-32-3p	177223111	177223118	8mer-1a	177223093	177223118	141	-6.51
CAediting_227104	chr2_177222530_+	ENSG00000170144.17	ENST00000411529	hsa-miR-328-3p	177222523	177222529	7mer-m8	177222509	177222530	140	-16.93
CAediting_227109	chr2_177222605_+	ENSG00000170144.17	ENST00000411529	hsa-miR-372-5p	177222599	177222606	8mer-1a	177222582	177222606	144	-11.94
CAediting_227104	chr2_177222530_+	ENSG00000170144.17	ENST00000411529	hsa-miR-3922-3p	177222525	177222530	6mer	177222512	177222531	141	-21.64
CAediting_227112	chr2_177222648_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4482-3p	177222644	177222651	8mer-1a	177222628	177222651	151	-16.84
CAediting_227113	chr2_177222650_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4482-3p	177222644	177222651	8mer-1a	177222628	177222651	151	-16.84
CAediting_227114	chr2_177222651_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4482-3p	177222644	177222651	8mer-1a	177222628	177222651	151	-16.84
CAediting_227102	chr2_177222521_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4490	177222518	177222524	7mer-m8	177222504	177222525	140	-12.02
CAediting_227103	chr2_177222524_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4490	177222518	177222524	7mer-m8	177222504	177222525	140	-12.02
CAediting_227094	chr2_177221795_+	ENSG00000170144.17	ENST00000411529	hsa-miR-4633-5p	177221788	177221795	8mer-1a	177221776	177221795	142	-15.22
CAediting_227105	chr2_177222553_+	ENSG00000170144.17	ENST00000411529	hsa-miR-5089-5p	177222551	177222557	7mer-m8	177222536	177222558	148	-14.13
CAediting_227106	chr2_177222558_+	ENSG00000170144.17	ENST00000411529	hsa-miR-5089-5p	177222551	177222557	7mer-m8	177222536	177222558	148	-14.13
CAediting_227106	chr2_177222558_+	ENSG00000170144.17	ENST00000411529	hsa-miR-512-3p	177222556	177222562	7mer-m8	177222542	177222563	149	-15.51
CAediting_227106	chr2_177222558_+	ENSG00000170144.17	ENST00000411529	hsa-miR-512-3p	177222556	177222562	7mer-m8	177222542	177222563	149	-15.51
CAediting_227104	chr2_177222530_+	ENSG00000170144.17	ENST00000411529	hsa-miR-550a-3-5p	177222528	177222535	8mer-1a	177222516	177222535	140	-14.1
CAediting_227104	chr2_177222530_+	ENSG00000170144.17	ENST00000411529	hsa-miR-550a-5p	177222528	177222535	8mer-1a	177222513	177222535	140	-16.78
CAediting_227104	chr2_177222530_+	ENSG00000170144.17	ENST00000411529	hsa-miR-550a-5p	177222528	177222535	8mer-1a	177222513	177222535	140	-16.78
CAediting_227105	chr2_177222553_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6504-3p	177222547	177222553	7mer-m8	177222533	177222554	152	-15.11
CAediting_227106	chr2_177222558_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6506-5p	177222552	177222558	7mer-m8	177222537	177222559	144	-13.78
CAediting_227091	chr2_177219976_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6740-5p	177219971	177219976	6mer	177219955	177219977	155	-23.47
CAediting_227103	chr2_177222524_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6775-3p	177222522	177222529	8mer-1a	177222509	177222529	140	-15.09
CAediting_227107	chr2_177222599_+	ENSG00000170144.17	ENST00000411529	hsa-miR-6783-3p	177222593	177222599	7mer-1a	177222574	177222599	146	-27.71
CAediting_227115	chr2_177222683_+	ENSG00000170144.17	ENST00000411529	hsa-miR-8052	177222682	177222688	7mer-1a	177222666	177222688	147	-20.42
CAediting_227122	chr2_177223602_+	ENSG00000170144.17	ENST00000411529	hsa-miR-8070	177223600	177223607	8mer-1a	177223581	177223607	145	-15.78
CAediting_227092	chr2_177220944_+	ENSG00000170144.17	ENST00000411529	hsa-miR-8087	177220942	177220948	7mer-m8	177220931	177220949	146	-15.33
CAediting_227087	chr2_177219829_+	ENSG00000170144.17	ENST00000435711	hsa-miR-20a-3p	177219827	177219833	7mer-m8	177219813	177219834	147	-14.53

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000170144.17	ENST00000411529	hsa-miR-605-3p	177220288	177220294	7mer-m8	177220275	177220295	157	-14.66
CAediting_393	chr1_1167164_+	ENSG00000170144.17	ENST00000411529	hsa-miR-200b-3p	177221939	177221944	6mer	177221922	177221945	140	-17.15
CAediting_1229413	chr17_67471544_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177222408	177222415	8mer-1a	177222392	177222415	154	-14.35
CAediting_1229414	chr17_67471546_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177221087	177221093	7mer-m8	177221069	177221094	151	-12.05
CAediting_1229414	chr17_67471546_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177222814	177222820	7mer-m8	177222795	177222821	160	-20.23
CAediting_117844	chr1_162342605_+	ENSG00000170144.17	ENST00000411529	hsa-miR-556-3p	177221961	177221968	8mer-1a	177221947	177221968	147	-10.91

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_393	chr1_1167164_+	ENSG00000170144.17	ENST00000411529	hsa-miR-200b-3p	177223369	177223375	7mer-m8	177223357	177223376	144	-8.11
CAediting_396018	chr5_1062918_-	ENSG00000170144.17	ENST00000411529	hsa-miR-4635	177221228	177221234	7mer-m8	177221215	177221235	147	-10.54
CAediting_396018	chr5_1062918_-	ENSG00000170144.17	ENST00000411529	hsa-miR-4635	177222818	177222824	7mer-m8	177222806	177222825	150	-14.52
CAediting_1229413	chr17_67471544_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177223254	177223261	8mer-1a	177223237	177223261	140	-5.98
CAediting_1229414	chr17_67471546_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177223254	177223261	8mer-1a	177223237	177223261	140	-5.98
CAediting_1229415	chr17_67471547_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177223254	177223261	8mer-1a	177223237	177223261	140	-5.98
CAediting_1229413	chr17_67471544_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177223574	177223581	8mer-1a	177223557	177223581	150	-7.73
CAediting_1229414	chr17_67471546_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177223574	177223581	8mer-1a	177223557	177223581	150	-7.73
CAediting_1229415	chr17_67471547_+	ENSG00000170144.17	ENST00000411529	hsa-miR-548aa	177223574	177223581	8mer-1a	177223557	177223581	150	-7.73
CAediting_117844	chr1_162342605_+	ENSG00000170144.17	ENST00000411529	hsa-miR-556-3p	177223003	177223010	8mer-1a	177222988	177223010	153	-12.89
CAediting_228905	chr2_188297554_+	ENSG00000170144.17	ENST00000411529	hsa-miR-561-3p	177219768	177219773	6mer	177219752	177219774	146	-13.99
CAediting_228905	chr2_188297554_+	ENSG00000170144.17	ENST00000411529	hsa-miR-561-3p	177219815	177219822	8mer-1a	177219802	177219822	150	-6.69
CAediting_228905	chr2_188297554_+	ENSG00000170144.17	ENST00000411529	hsa-miR-561-3p	177220358	177220364	7mer-m8	177220342	177220365	147	-5.83
CAediting_1351755	chr19_40282625_-	ENSG00000170144.17	ENST00000411529	hsa-miR-641	177222092	177222098	7mer-m8	177222076	177222099	140	-13.73
CAediting_1351755	chr19_40282625_-	ENSG00000170144.17	ENST00000411529	hsa-miR-641	177222376	177222381	6mer	177222358	177222382	145	-13.92

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HNRNPA3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000392524.5	protein_coding
ENST00000411529.5	protein_coding
ENST00000435711.4	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_227087	ENST00000392524.5	chr2_177219829_+	-640.30	-638.90	-647.30
CAediting_227088	ENST00000392524.5	chr2_177219915_+	-639.00	-638.90	-647.30
CAediting_227089	ENST00000392524.5	chr2_177219922_+	-639.40	-638.90	-647.30
CAediting_227090	ENST00000392524.5	chr2_177219923_+	-645.50	-638.90	-647.30
CAediting_227091	ENST00000392524.5	chr2_177219976_+	-639.50	-638.90	-647.30
CAediting_227087	ENST00000411529.5	chr2_177219829_+	-1485.90	-1483.80	-1520.90
CAediting_227088	ENST00000411529.5	chr2_177219915_+	-1483.90	-1483.80	-1520.90
CAediting_227089	ENST00000411529.5	chr2_177219922_+	-1484.30	-1483.80	-1520.90
CAediting_227090	ENST00000411529.5	chr2_177219923_+	-1490.40	-1483.80	-1520.90
CAediting_227091	ENST00000411529.5	chr2_177219976_+	-1484.40	-1483.80	-1520.90
CAediting_227092	ENST00000411529.5	chr2_177220944_+	-1490.40	-1483.80	-1520.90
CAediting_227093	ENST00000411529.5	chr2_177221133_+	-1483.80	-1483.80	-1520.90
CAediting_227094	ENST00000411529.5	chr2_177221795_+	-1483.80	-1483.80	-1520.90
CAediting_227095	ENST00000411529.5	chr2_177221837_+	-1483.80	-1483.80	-1520.90
CAediting_227096	ENST00000411529.5	chr2_177221875_+	-1483.50	-1483.80	-1520.90
CAediting_227097	ENST00000411529.5	chr2_177222318_+	-1484.50	-1483.80	-1520.90
CAediting_227098	ENST00000411529.5	chr2_177222334_+	-1483.60	-1483.80	-1520.90
CAediting_227099	ENST00000411529.5	chr2_177222504_+	-1483.90	-1483.80	-1520.90
CAediting_227100	ENST00000411529.5	chr2_177222505_+	-1483.50	-1483.80	-1520.90
CAediting_227101	ENST00000411529.5	chr2_177222517_+	-1486.20	-1483.80	-1520.90
CAediting_227102	ENST00000411529.5	chr2_177222521_+	-1483.10	-1483.80	-1520.90
CAediting_227103	ENST00000411529.5	chr2_177222524_+	-1486.40	-1483.80	-1520.90
CAediting_227104	ENST00000411529.5	chr2_177222530_+	-1486.40	-1483.80	-1520.90
CAediting_227105	ENST00000411529.5	chr2_177222553_+	-1483.80	-1483.80	-1520.90
CAediting_227106	ENST00000411529.5	chr2_177222558_+	-1483.00	-1483.80	-1520.90
CAediting_227107	ENST00000411529.5	chr2_177222599_+	-1484.20	-1483.80	-1520.90
CAediting_227108	ENST00000411529.5	chr2_177222600_+	-1484.00	-1483.80	-1520.90
CAediting_227109	ENST00000411529.5	chr2_177222605_+	-1484.60	-1483.80	-1520.90
CAediting_227110	ENST00000411529.5	chr2_177222607_+	-1483.20	-1483.80	-1520.90
CAediting_227111	ENST00000411529.5	chr2_177222644_+	-1484.20	-1483.80	-1520.90
CAediting_227112	ENST00000411529.5	chr2_177222648_+	-1483.80	-1483.80	-1520.90
CAediting_227113	ENST00000411529.5	chr2_177222650_+	-1483.80	-1483.80	-1520.90
CAediting_227114	ENST00000411529.5	chr2_177222651_+	-1483.80	-1483.80	-1520.90
CAediting_227115	ENST00000411529.5	chr2_177222683_+	-1483.50	-1483.80	-1520.90
CAediting_227116	ENST00000411529.5	chr2_177222779_+	-1485.30	-1483.80	-1520.90
CAediting_227117	ENST00000411529.5	chr2_177223114_+	-1484.80	-1483.80	-1520.90
CAediting_227118	ENST00000411529.5	chr2_177223122_+	-1483.80	-1483.80	-1520.90
CAediting_227119	ENST00000411529.5	chr2_177223184_+	-1490.00	-1483.80	-1520.90
CAediting_227120	ENST00000411529.5	chr2_177223220_+	-1484.40	-1483.80	-1520.90
CAediting_227121	ENST00000411529.5	chr2_177223286_+	-1485.00	-1483.80	-1520.90
CAediting_227122	ENST00000411529.5	chr2_177223602_+	-1484.70	-1483.80	-1520.90
CAediting_227087	ENST00000435711.4	chr2_177219829_+	-462.40	-463.10	-462.40

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Relation with ADAR for HNRNPA3

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_227090	chr2_177219923_+	2.91055532156894e-30	0.543945770633635	.	.	.	.
LIHC	CAediting_227090	chr2_177219923_+	8.66358524395188e-06	0.356563120507689	.	.	.	.
CESC	CAediting_227090	chr2_177219923_+	0.0399430966753266	0.261661505163624	.	.	.	.
LUAD	CAediting_227090	chr2_177219923_+	3.05134903746771e-18	0.576808261431239	.	.	.	.
LUSC	CAediting_227090	chr2_177219923_+	1.68954830784257e-05	0.463563323636842	.	.	.	.
HNSC	CAediting_227090	chr2_177219923_+	0.000260859589045862	0.370096055866979	.	.	.	.
STAD	CAediting_227090	chr2_177219923_+	1.28176035581917e-05	0.477653968065514	.	.	.	.
UCEC	CAediting_227090	chr2_177219923_+	7.96374120556519e-06	0.453780131127934	.	.	.	.
OV	CAediting_227090	chr2_177219923_+	4.97577268025288e-06	0.337386086809351	.	.	.	.

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Relation with cancer stages for HNRNPA3

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_227090	chr2_177219923_+	0.0148718869871738	0.12670473516189

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Relation with survival for HNRNPA3

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for HNRNPA3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for HNRNPA3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
HNRNPA3	C0036341	Schizophrenia	1	CTD_human

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene