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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: LRRC55 (CAeditome ID:219527) |
Gene summary for LRRC55 |
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Gene information | Gene symbol | LRRC55 | Gene ID | 219527 |
Gene name | leucine rich repeat containing 55 | |
Synonyms | - | |
Cytomap | 11q12.1 | |
Type of gene | protein-coding | |
Description | leucine-rich repeat-containing protein 55BK channel auxiliary gamma subunit LRRC55BK channel auxilliary gamma snit LRRC55 | |
Modification date | 20210518 | |
UniProtAcc | Q6ZSA7 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
LRRC55 | GO:0005249 | Leucine-rich repeat-containing protein 55 | 22547800 |
LRRC55 | GO:0099104 | Leucine-rich repeat-containing protein 55 | 22547800 |
LRRC55 | GO:0071805 | Leucine-rich repeat-containing protein 55 | 22547800 |
LRRC55 | GO:1903818 | Leucine-rich repeat-containing protein 55 | 22547800 |
LRRC55 | GO:0008076 | Leucine-rich repeat-containing protein 55 | 22547800 |
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RNA A-to-I events for LRRC55 |
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CAediting_813794(57190786, +), |
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RNA editing positional annotations for LRRC55 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_813794 | chr11_57190786_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_813794 | chr11_57190786_+ | DNA | TcMar-Mariner | MADE1 |
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RNA A-to-I editing events in the alternative splicing sites for LRRC55 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LRRC55 |
![]() * The grey color means N/A. |
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GBM.CAediting_813794.ENSG00000183908.LRRC55.png ![]() |
LGG.CAediting_813794.ENSG00000183908.LRRC55.png ![]() |
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Protein coding region RNA A-to-I editings for LRRC55 |
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The effects of the RNA editing to the miRNA binding sites for LRRC55 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_813794 | chr11_57190786_+ | ENSG00000183908.5 | ENST00000497933 | hsa-miR-4776-3p | 57190783 | 57190790 | 8mer-1a | 57190768 | 57190790 | 149.00 | -12.29 |
CAediting_813794 | chr11_57190786_+ | ENSG00000183908.5 | ENST00000497933 | hsa-miR-4776-3p | 57190783 | 57190790 | 8mer-1a | 57190768 | 57190790 | 149.00 | -12.29 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000183908.5 | ENST00000497933 | hsa-miR-605-3p | 57187689 | 57187696 | 8mer-1a | 57187673 | 57187696 | 141 | -19.68 |
CAediting_688080 | chr9_63819626_+ | ENSG00000183908.5 | ENST00000497933 | hsa-miR-4477b | 57191377 | 57191384 | 8mer-1a | 57191364 | 57191384 | 147 | -11.63 |
CAediting_1229414 | chr17_67471546_+ | ENSG00000183908.5 | ENST00000497933 | hsa-miR-548aa | 57189042 | 57189048 | 7mer-m8 | 57189020 | 57189049 | 156 | -12 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000183908.5 | ENST00000497933 | hsa-miR-548aa | 57190320 | 57190326 | 7mer-m8 | 57190304 | 57190327 | 148 | -11.25 |
CAediting_396018 | chr5_1062918_- | ENSG00000183908.5 | ENST00000497933 | hsa-miR-4635 | 57187692 | 57187698 | 7mer-m8 | 57187679 | 57187699 | 152 | -17.7 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1368054 | chr19_46709310_- | ENSG00000183908.5 | ENST00000497933 | hsa-miR-320e | 57191295 | 57191301 | 7mer-m8 | 57191285 | 57191302 | 141 | -12.23 |
CAediting_414656 | chr5_72878640_+ | ENSG00000183908.5 | ENST00000497933 | hsa-miR-4804-3p | 57188484 | 57188491 | 8mer-1a | 57188471 | 57188491 | 144 | -9.35 |
CAediting_1524209 | chrX_134546392_- | ENSG00000183908.5 | ENST00000497933 | hsa-miR-503-5p | 57190348 | 57190354 | 7mer-1a | 57190331 | 57190354 | 151 | -26.31 |
CAediting_468389 | chr6_31355314_- | ENSG00000183908.5 | ENST00000497933 | hsa-miR-6891-5p | 57189131 | 57189136 | 6mer | 57189119 | 57189137 | 142 | -20.05 |
CAediting_468389 | chr6_31355314_- | ENSG00000183908.5 | ENST00000497933 | hsa-miR-6891-5p | 57188102 | 57188108 | 7mer-m8 | 57188087 | 57188109 | 141 | -25.2 |
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The effects of the RNA editing to the stability of the RNA structures for LRRC55 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for LRRC55 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LGG | CAediting_813794 | chr11_57190786_+ | 1.85126290679829e-09 | 0.349958958860846 | . | . | . | . |
GBM | CAediting_813794 | chr11_57190786_+ | 7.24469768471276e-07 | 0.411234801119731 | . | . | . | . |
OV | CAediting_813794 | chr11_57190786_+ | 2.3263211794617e-08 | 0.404626182907945 | . | . | . | . |
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Relation with cancer stages for LRRC55 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for LRRC55 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for LRRC55 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for LRRC55 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |