CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CLN8 (CAeditome ID:2055)

Gene summary for CLN8

check button Gene summary
Gene informationGene symbol

CLN8

Gene ID

2055

Gene nameCLN8 transmembrane ER and ERGIC protein
SynonymsC8orf61|EPMR|TLCD6
Cytomap

8p23.3

Type of geneprotein-coding
Descriptionprotein CLN8ceroid-lipofuscinosis, neuronal 8
Modification date20210518
UniProtAcc

Q9UBY8

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CLN8

GO:0097001

Protein CLN8

18317235

CLN8

GO:0005783

Protein CLN8

10861296

CLN8

GO:0005783

Protein CLN8

19941651

CLN8

GO:0005793

Protein CLN8

10861296


Top

RNA A-to-I events for CLN8

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000182372.6
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_616263(1761442, +), CAediting_616264(1761450, +), CAediting_616265(1761480, +), CAediting_616266(1761510, +), CAediting_616267(1761547, +), CAediting_616268(1761554, +), CAediting_616269(1761599, +), CAediting_616270(1761608, +), CAediting_616271(1761621, +), CAediting_616272(1772065, +), CAediting_616273(1772539, +), CAediting_616274(1774716, +), CAediting_616275(1774731, +), CAediting_616276(1774764, +), CAediting_616277(1774768, +), CAediting_616278(1774773, +), CAediting_616279(1774791, +), CAediting_616280(1774792, +), CAediting_616281(1774808, +), CAediting_616282(1774809, +), CAediting_616283(1774825, +), CAediting_616284(1774827, +), CAediting_616285(1774828, +), CAediting_616286(1774850, +), CAediting_616287(1774866, +), CAediting_616288(1774920, +), CAediting_616289(1779322, +), CAediting_616290(1779360, +), CAediting_616291(1779373, +), CAediting_616292(1779383, +), CAediting_616293(1779419, +), CAediting_616294(1779431, +), CAediting_616295(1779480, +), CAediting_616296(1779488, +), CAediting_616297(1781067, +), CAediting_616298(1781073, +), CAediting_616299(1781091, +), CAediting_616300(1781098, +), CAediting_616301(1781102, +), CAediting_616302(1781103, +), CAediting_616303(1781111, +), CAediting_616304(1781125, +), CAediting_616305(1781129, +), CAediting_616306(1781138, +), CAediting_616307(1781143, +), CAediting_616308(1781148, +), CAediting_616309(1781151, +), CAediting_616310(1781157, +), CAediting_616311(1781159, +), CAediting_616312(1781162, +), CAediting_616313(1781172, +), CAediting_616314(1781174, +), CAediting_616315(1781180, +), CAediting_616316(1781181, +), CAediting_616317(1781182, +), CAediting_616318(1781187, +), CAediting_616319(1781197, +), CAediting_616320(1781198, +), CAediting_616321(1781199, +), CAediting_616322(1781202, +), CAediting_616323(1781205, +), CAediting_616324(1781206, +), CAediting_616325(1781207, +), CAediting_616326(1781208, +), CAediting_616327(1781211, +), CAediting_616328(1781227, +), CAediting_616329(1781231, +), CAediting_616330(1781238, +), CAediting_616331(1781243, +), CAediting_616332(1781260, +), CAediting_616333(1781267, +), CAediting_616334(1781270, +), CAediting_616335(1781278, +), CAediting_616336(1781279, +), CAediting_616337(1781286, +), CAediting_616338(1781292, +), CAediting_616339(1781299, +), CAediting_616340(1781303, +), CAediting_616341(1781308, +), CAediting_616342(1781353, +), CAediting_616343(1781354, +), CAediting_616344(1782164, +), CAediting_616345(1782195, +), CAediting_616346(1782209, +), CAediting_616347(1782219, +), CAediting_616348(1782224, +), CAediting_616349(1782231, +), CAediting_616350(1782245, +), CAediting_616351(1782262, +), CAediting_616352(1782270, +), CAediting_616353(1782271, +), CAediting_616354(1782274, +), CAediting_616355(1782290, +), CAediting_616356(1782319, +), CAediting_616357(1782325, +), CAediting_616358(1782328, +), CAediting_616359(1782330, +), CAediting_616360(1782332, +), CAediting_616361(1782334, +), CAediting_616362(1782342, +), CAediting_616363(1782354, +), CAediting_616364(1782374, +), CAediting_616365(1782377, +), CAediting_616366(1782379, +), CAediting_616367(1782380, +), CAediting_616368(1782384, +), CAediting_616369(1782392, +), CAediting_616370(1782405, +), CAediting_616371(1782406, +), CAediting_616372(1782407, +), CAediting_616373(1782416, +), CAediting_616374(1782419, +), CAediting_616375(1782432, +), CAediting_616376(1784008, +), CAediting_616377(1784012, +), CAediting_616378(1784022, +), CAediting_616379(1784030, +), CAediting_616380(1784031, +), CAediting_616381(1784036, +), CAediting_616382(1784076, +), CAediting_616383(1784086, +), CAediting_616384(1784099, +), CAediting_616385(1784108, +), CAediting_616386(1784109, +), CAediting_616387(1784110, +), CAediting_616388(1784115, +), CAediting_616389(1784121, +), CAediting_616390(1784126, +), CAediting_616391(1784128, +), CAediting_616392(1784134, +), CAediting_616393(1784135, +), CAediting_616394(1784170, +), CAediting_616395(1784174, +), CAediting_616396(1784181, +), CAediting_616397(1784186, +), CAediting_616398(1784187, +), CAediting_616399(1784193, +), CAediting_616400(1784197, +), CAediting_616401(1784205, +), CAediting_616402(1784206, +), CAediting_616403(1784213, +), CAediting_616404(1784217, +), CAediting_616405(1784221, +), CAediting_616406(1784230, +), CAediting_616407(1784235, +), CAediting_616408(1784237, +), CAediting_616409(1784240, +), CAediting_616410(1784269, +), CAediting_616411(1784273, +),

Top

RNA editing positional annotations for CLN8 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_616263chr8_1761442_+ncRNA_intronic
CAediting_616264chr8_1761450_+ncRNA_intronic
CAediting_616265chr8_1761480_+ncRNA_intronic
CAediting_616266chr8_1761510_+ncRNA_intronic
CAediting_616267chr8_1761547_+ncRNA_intronic
CAediting_616268chr8_1761554_+ncRNA_intronic
CAediting_616269chr8_1761599_+ncRNA_intronic
CAediting_616270chr8_1761608_+ncRNA_intronic
CAediting_616271chr8_1761621_+ncRNA_intronic
CAediting_616272chr8_1772065_+intronic
CAediting_616273chr8_1772539_+intronic
CAediting_616274chr8_1774716_+ncRNA_intronic
CAediting_616275chr8_1774731_+ncRNA_intronic
CAediting_616276chr8_1774764_+ncRNA_intronic
CAediting_616277chr8_1774768_+ncRNA_intronic
CAediting_616278chr8_1774773_+ncRNA_intronic
CAediting_616279chr8_1774791_+ncRNA_intronic
CAediting_616280chr8_1774792_+ncRNA_intronic
CAediting_616281chr8_1774808_+ncRNA_intronic
CAediting_616282chr8_1774809_+ncRNA_intronic
CAediting_616283chr8_1774825_+ncRNA_intronic
CAediting_616284chr8_1774827_+ncRNA_intronic
CAediting_616285chr8_1774828_+ncRNA_intronic
CAediting_616286chr8_1774850_+ncRNA_intronic
CAediting_616287chr8_1774866_+ncRNA_intronic
CAediting_616288chr8_1774920_+ncRNA_intronic
CAediting_616289chr8_1779322_+ncRNA_intronic
CAediting_616290chr8_1779360_+ncRNA_intronic
CAediting_616291chr8_1779373_+ncRNA_intronic
CAediting_616292chr8_1779383_+ncRNA_intronic
CAediting_616293chr8_1779419_+ncRNA_intronic
CAediting_616294chr8_1779431_+ncRNA_intronic
CAediting_616295chr8_1779480_+ncRNA_intronic
CAediting_616296chr8_1779488_+ncRNA_intronic
CAediting_616297chr8_1781067_+UTR3
CAediting_616298chr8_1781073_+UTR3
CAediting_616299chr8_1781091_+UTR3
CAediting_616300chr8_1781098_+UTR3
CAediting_616301chr8_1781102_+UTR3
CAediting_616302chr8_1781103_+UTR3
CAediting_616303chr8_1781111_+UTR3
CAediting_616304chr8_1781125_+UTR3
CAediting_616305chr8_1781129_+UTR3
CAediting_616306chr8_1781138_+UTR3
CAediting_616307chr8_1781143_+UTR3
CAediting_616308chr8_1781148_+UTR3
CAediting_616309chr8_1781151_+UTR3
CAediting_616310chr8_1781157_+UTR3
CAediting_616311chr8_1781159_+UTR3
CAediting_616312chr8_1781162_+UTR3
CAediting_616313chr8_1781172_+UTR3
CAediting_616314chr8_1781174_+UTR3
CAediting_616315chr8_1781180_+UTR3
CAediting_616316chr8_1781181_+UTR3
CAediting_616317chr8_1781182_+UTR3
CAediting_616318chr8_1781187_+UTR3
CAediting_616319chr8_1781197_+UTR3
CAediting_616320chr8_1781198_+UTR3
CAediting_616321chr8_1781199_+UTR3
CAediting_616322chr8_1781202_+UTR3
CAediting_616323chr8_1781205_+UTR3
CAediting_616324chr8_1781206_+UTR3
CAediting_616325chr8_1781207_+UTR3
CAediting_616326chr8_1781208_+UTR3
CAediting_616327chr8_1781211_+UTR3
CAediting_616328chr8_1781227_+UTR3
CAediting_616329chr8_1781231_+UTR3
CAediting_616330chr8_1781238_+UTR3
CAediting_616331chr8_1781243_+UTR3
CAediting_616332chr8_1781260_+UTR3
CAediting_616333chr8_1781267_+UTR3
CAediting_616334chr8_1781270_+UTR3
CAediting_616335chr8_1781278_+UTR3
CAediting_616336chr8_1781279_+UTR3
CAediting_616337chr8_1781286_+UTR3
CAediting_616338chr8_1781292_+UTR3
CAediting_616339chr8_1781299_+UTR3
CAediting_616340chr8_1781303_+UTR3
CAediting_616341chr8_1781308_+UTR3
CAediting_616342chr8_1781353_+UTR3
CAediting_616343chr8_1781354_+UTR3
CAediting_616344chr8_1782164_+UTR3
CAediting_616345chr8_1782195_+UTR3
CAediting_616346chr8_1782209_+UTR3
CAediting_616347chr8_1782219_+UTR3
CAediting_616348chr8_1782224_+UTR3
CAediting_616349chr8_1782231_+UTR3
CAediting_616350chr8_1782245_+UTR3
CAediting_616351chr8_1782262_+UTR3
CAediting_616352chr8_1782270_+UTR3
CAediting_616353chr8_1782271_+UTR3
CAediting_616354chr8_1782274_+UTR3
CAediting_616355chr8_1782290_+UTR3
CAediting_616356chr8_1782319_+UTR3
CAediting_616357chr8_1782325_+UTR3
CAediting_616358chr8_1782328_+UTR3
CAediting_616359chr8_1782330_+UTR3
CAediting_616360chr8_1782332_+UTR3
CAediting_616361chr8_1782334_+UTR3
CAediting_616362chr8_1782342_+UTR3
CAediting_616363chr8_1782354_+UTR3
CAediting_616364chr8_1782374_+UTR3
CAediting_616365chr8_1782377_+UTR3
CAediting_616366chr8_1782379_+UTR3
CAediting_616367chr8_1782380_+UTR3
CAediting_616368chr8_1782384_+UTR3
CAediting_616369chr8_1782392_+UTR3
CAediting_616370chr8_1782405_+UTR3
CAediting_616371chr8_1782406_+UTR3
CAediting_616372chr8_1782407_+UTR3
CAediting_616373chr8_1782416_+UTR3
CAediting_616374chr8_1782419_+UTR3
CAediting_616375chr8_1782432_+UTR3
CAediting_616376chr8_1784008_+UTR3
CAediting_616377chr8_1784012_+UTR3
CAediting_616378chr8_1784022_+UTR3
CAediting_616379chr8_1784030_+UTR3
CAediting_616380chr8_1784031_+UTR3
CAediting_616381chr8_1784036_+UTR3
CAediting_616382chr8_1784076_+UTR3
CAediting_616383chr8_1784086_+UTR3
CAediting_616384chr8_1784099_+UTR3
CAediting_616385chr8_1784108_+UTR3
CAediting_616386chr8_1784109_+UTR3
CAediting_616387chr8_1784110_+UTR3
CAediting_616388chr8_1784115_+UTR3
CAediting_616389chr8_1784121_+UTR3
CAediting_616390chr8_1784126_+UTR3
CAediting_616391chr8_1784128_+UTR3
CAediting_616392chr8_1784134_+UTR3
CAediting_616393chr8_1784135_+UTR3
CAediting_616394chr8_1784170_+UTR3
CAediting_616395chr8_1784174_+UTR3
CAediting_616396chr8_1784181_+UTR3
CAediting_616397chr8_1784186_+UTR3
CAediting_616398chr8_1784187_+UTR3
CAediting_616399chr8_1784193_+UTR3
CAediting_616400chr8_1784197_+UTR3
CAediting_616401chr8_1784205_+UTR3
CAediting_616402chr8_1784206_+UTR3
CAediting_616403chr8_1784213_+UTR3
CAediting_616404chr8_1784217_+UTR3
CAediting_616405chr8_1784221_+UTR3
CAediting_616406chr8_1784230_+UTR3
CAediting_616407chr8_1784235_+UTR3
CAediting_616408chr8_1784237_+UTR3
CAediting_616409chr8_1784240_+UTR3
CAediting_616410chr8_1784269_+UTR3
CAediting_616411chr8_1784273_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_616263chr8_1761442_+SINEAluAluSz
CAediting_616264chr8_1761450_+SINEAluAluSz
CAediting_616265chr8_1761480_+SINEAluAluSz
CAediting_616266chr8_1761510_+SINEAluAluSz
CAediting_616267chr8_1761547_+SINEAluAluSz
CAediting_616268chr8_1761554_+SINEAluAluSz
CAediting_616269chr8_1761599_+SINEAluAluSz
CAediting_616270chr8_1761608_+SINEAluAluSz
CAediting_616271chr8_1761621_+SINEAluAluSz
CAediting_616272chr8_1772065_+SINEAluAluSx3
CAediting_616273chr8_1772539_+SINEAluAluSx1
CAediting_616274chr8_1774716_+SINEAluAluJb
CAediting_616275chr8_1774731_+SINEAluAluJb
CAediting_616276chr8_1774764_+SINEAluAluJb
CAediting_616277chr8_1774768_+SINEAluAluJb
CAediting_616278chr8_1774773_+SINEAluAluJb
CAediting_616279chr8_1774791_+SINEAluAluJb
CAediting_616280chr8_1774792_+SINEAluAluJb
CAediting_616281chr8_1774808_+SINEAluAluJb
CAediting_616282chr8_1774809_+SINEAluAluJb
CAediting_616283chr8_1774825_+SINEAluAluJb
CAediting_616284chr8_1774827_+SINEAluAluJb
CAediting_616285chr8_1774828_+SINEAluAluJb
CAediting_616286chr8_1774850_+SINEAluAluJb
CAediting_616287chr8_1774866_+SINEAluAluJb
CAediting_616288chr8_1774920_+SINEAluAluJb
CAediting_616289chr8_1779322_+SINEAluAluSz
CAediting_616290chr8_1779360_+SINEAluAluSz
CAediting_616291chr8_1779373_+SINEAluAluSz
CAediting_616292chr8_1779383_+SINEAluAluSz
CAediting_616293chr8_1779419_+SINEAluAluSz
CAediting_616294chr8_1779431_+SINEAluAluSz
CAediting_616295chr8_1779480_+SINEAluAluSz
CAediting_616296chr8_1779488_+SINEAluAluSz
CAediting_616299chr8_1781091_+SINEAluAluSz
CAediting_616300chr8_1781098_+SINEAluAluSz
CAediting_616301chr8_1781102_+SINEAluAluSz
CAediting_616302chr8_1781103_+SINEAluAluSz
CAediting_616303chr8_1781111_+SINEAluAluSz
CAediting_616304chr8_1781125_+SINEAluAluSz
CAediting_616305chr8_1781129_+SINEAluAluSz
CAediting_616306chr8_1781138_+SINEAluAluSz
CAediting_616307chr8_1781143_+SINEAluAluSz
CAediting_616308chr8_1781148_+SINEAluAluSz
CAediting_616309chr8_1781151_+SINEAluAluSz
CAediting_616310chr8_1781157_+SINEAluAluSz
CAediting_616311chr8_1781159_+SINEAluAluSz
CAediting_616312chr8_1781162_+SINEAluAluSz
CAediting_616313chr8_1781172_+SINEAluAluSz
CAediting_616314chr8_1781174_+SINEAluAluSz
CAediting_616315chr8_1781180_+SINEAluAluSz
CAediting_616316chr8_1781181_+SINEAluAluSz
CAediting_616317chr8_1781182_+SINEAluAluSz
CAediting_616318chr8_1781187_+SINEAluAluSz
CAediting_616319chr8_1781197_+SINEAluAluSz
CAediting_616320chr8_1781198_+SINEAluAluSz
CAediting_616321chr8_1781199_+SINEAluAluSz
CAediting_616322chr8_1781202_+SINEAluAluSz
CAediting_616323chr8_1781205_+SINEAluAluSz
CAediting_616324chr8_1781206_+SINEAluAluSz
CAediting_616325chr8_1781207_+SINEAluAluSz
CAediting_616326chr8_1781208_+SINEAluAluSz
CAediting_616327chr8_1781211_+SINEAluAluSz
CAediting_616328chr8_1781227_+SINEAluAluSz
CAediting_616329chr8_1781231_+SINEAluAluSz
CAediting_616330chr8_1781238_+SINEAluAluSz
CAediting_616331chr8_1781243_+SINEAluAluSz
CAediting_616332chr8_1781260_+SINEAluAluSz
CAediting_616333chr8_1781267_+SINEAluAluSz
CAediting_616334chr8_1781270_+SINEAluAluSz
CAediting_616335chr8_1781278_+SINEAluAluSz
CAediting_616336chr8_1781279_+SINEAluAluSz
CAediting_616337chr8_1781286_+SINEAluAluSz
CAediting_616338chr8_1781292_+SINEAluAluSz
CAediting_616339chr8_1781299_+SINEAluAluSz
CAediting_616340chr8_1781303_+SINEAluAluSz
CAediting_616341chr8_1781308_+SINEAluAluSz
CAediting_616342chr8_1781353_+SINEAluAluSz
CAediting_616343chr8_1781354_+SINEAluAluSz
CAediting_616344chr8_1782164_+SINEAluAluSz
CAediting_616345chr8_1782195_+SINEAluAluSz
CAediting_616346chr8_1782209_+SINEAluAluSz
CAediting_616347chr8_1782219_+SINEAluAluSz
CAediting_616348chr8_1782224_+SINEAluAluSz
CAediting_616349chr8_1782231_+SINEAluAluSz
CAediting_616350chr8_1782245_+SINEAluAluSz
CAediting_616351chr8_1782262_+SINEAluAluSz
CAediting_616352chr8_1782270_+SINEAluAluSz
CAediting_616353chr8_1782271_+SINEAluAluSz
CAediting_616354chr8_1782274_+SINEAluAluSz
CAediting_616355chr8_1782290_+SINEAluAluSz
CAediting_616356chr8_1782319_+SINEAluAluSz
CAediting_616357chr8_1782325_+SINEAluAluSz
CAediting_616358chr8_1782328_+SINEAluAluSz
CAediting_616359chr8_1782330_+SINEAluAluSz
CAediting_616360chr8_1782332_+SINEAluAluSz
CAediting_616361chr8_1782334_+SINEAluAluSz
CAediting_616362chr8_1782342_+SINEAluAluSz
CAediting_616363chr8_1782354_+SINEAluAluSz
CAediting_616364chr8_1782374_+SINEAluAluSz
CAediting_616365chr8_1782377_+SINEAluAluSz
CAediting_616366chr8_1782379_+SINEAluAluSz
CAediting_616367chr8_1782380_+SINEAluAluSz
CAediting_616368chr8_1782384_+SINEAluAluSz
CAediting_616369chr8_1782392_+SINEAluAluSz
CAediting_616370chr8_1782405_+SINEAluAluSz
CAediting_616371chr8_1782406_+SINEAluAluSz
CAediting_616372chr8_1782407_+SINEAluAluSz
CAediting_616373chr8_1782416_+SINEAluAluSz
CAediting_616374chr8_1782419_+SINEAluAluSz
CAediting_616375chr8_1782432_+SINEAluAluSz
CAediting_616376chr8_1784008_+SINEAluAluSz
CAediting_616377chr8_1784012_+SINEAluAluSz
CAediting_616378chr8_1784022_+SINEAluAluSz
CAediting_616379chr8_1784030_+SINEAluAluSz
CAediting_616380chr8_1784031_+SINEAluAluSz
CAediting_616381chr8_1784036_+SINEAluAluSz
CAediting_616382chr8_1784076_+SINEAluAluSz
CAediting_616383chr8_1784086_+SINEAluAluSz
CAediting_616384chr8_1784099_+SINEAluAluSz
CAediting_616385chr8_1784108_+SINEAluAluSz
CAediting_616386chr8_1784109_+SINEAluAluSz
CAediting_616387chr8_1784110_+SINEAluAluSz
CAediting_616388chr8_1784115_+SINEAluAluSz
CAediting_616389chr8_1784121_+SINEAluAluSz
CAediting_616390chr8_1784126_+SINEAluAluSz
CAediting_616391chr8_1784128_+SINEAluAluSz
CAediting_616392chr8_1784134_+SINEAluAluSz
CAediting_616393chr8_1784135_+SINEAluAluSz
CAediting_616394chr8_1784170_+SINEAluAluSz
CAediting_616395chr8_1784174_+SINEAluAluSz
CAediting_616396chr8_1784181_+SINEAluAluSz
CAediting_616397chr8_1784186_+SINEAluAluSz
CAediting_616398chr8_1784187_+SINEAluAluSz
CAediting_616399chr8_1784193_+SINEAluAluSz
CAediting_616400chr8_1784197_+SINEAluAluSz
CAediting_616401chr8_1784205_+SINEAluAluSz
CAediting_616402chr8_1784206_+SINEAluAluSz
CAediting_616403chr8_1784213_+SINEAluAluSz
CAediting_616404chr8_1784217_+SINEAluAluSz
CAediting_616405chr8_1784221_+SINEAluAluSz
CAediting_616406chr8_1784230_+SINEAluAluSz
CAediting_616407chr8_1784235_+SINEAluAluSz
CAediting_616408chr8_1784237_+SINEAluAluSz
CAediting_616409chr8_1784240_+SINEAluAluSz
CAediting_616410chr8_1784269_+SINEAluAluSz
CAediting_616411chr8_1784273_+SINEAluAluSz

Top

RNA A-to-I editing events in the alternative splicing sites for CLN8

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_616304chr8_1781125_+1781124:17811325SS2+0iGAGGCAGGT1.9GGGGCAGGT-1.17
IRCAediting_616305chr8_1781129_+1781124:17811325SS0+3iGAGGCAGGT1.9GAGGCGGGT-0.68
IRCAediting_616307chr8_1781143_+1781142:17811505SS2+0iGAGGCCAGG-2.81GGGGCCAGG-7.32
IRCAediting_616308chr8_1781148_+1781142:17811505SS0+4iGAGGCCAGG-2.81GAGGCCGGG-6.12
IRCAediting_616362chr8_1782342_+1782335:17823573SS0+13iGGGTTTCACCATGTTGGCCAGGC-13.59GGGTTTCGCCATGTTGGCCAGGC-13.81
IRCAediting_616363chr8_1782354_+1782335:17823573SS0+1iGGGTTTCACCATGTTGGCCAGGC-13.59GGGTTTCACCATGTTGGCCGGGC-4.84

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000182372.6.CLN8.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000182372.6.CLN8.
boxplot

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for CLN8

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
KIRC.CAediting_616369.ENSG00000182372.CLN8.png
Soverview

Top

Protein coding region RNA A-to-I editings for CLN8

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for CLN8

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for CLN8

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000331222.4protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_616297ENST00000331222.4chr8_1781067_+-2887.60-2887.60-2960.40
CAediting_616298ENST00000331222.4chr8_1781073_+-2887.60-2887.60-2960.40
CAediting_616299ENST00000331222.4chr8_1781091_+-2887.30-2887.60-2960.40
CAediting_616300ENST00000331222.4chr8_1781098_+-2887.60-2887.60-2960.40
CAediting_616301ENST00000331222.4chr8_1781102_+-2887.60-2887.60-2960.40
CAediting_616302ENST00000331222.4chr8_1781103_+-2887.60-2887.60-2960.40
CAediting_616303ENST00000331222.4chr8_1781111_+-2887.90-2887.60-2960.40
CAediting_616304ENST00000331222.4chr8_1781125_+-2890.30-2887.60-2960.40
CAediting_616305ENST00000331222.4chr8_1781129_+-2888.10-2887.60-2960.40
CAediting_616306ENST00000331222.4chr8_1781138_+-2887.20-2887.60-2960.40
CAediting_616307ENST00000331222.4chr8_1781143_+-2886.60-2887.60-2960.40
CAediting_616308ENST00000331222.4chr8_1781148_+-2886.90-2887.60-2960.40
CAediting_616309ENST00000331222.4chr8_1781151_+-2891.10-2887.60-2960.40
CAediting_616310ENST00000331222.4chr8_1781157_+-2887.30-2887.60-2960.40
CAediting_616311ENST00000331222.4chr8_1781159_+-2894.30-2887.60-2960.40
CAediting_616312ENST00000331222.4chr8_1781162_+-2887.40-2887.60-2960.40
CAediting_616313ENST00000331222.4chr8_1781172_+-2887.40-2887.60-2960.40
CAediting_616314ENST00000331222.4chr8_1781174_+-2887.00-2887.60-2960.40
CAediting_616315ENST00000331222.4chr8_1781180_+-2888.30-2887.60-2960.40
CAediting_616316ENST00000331222.4chr8_1781181_+-2887.60-2887.60-2960.40
CAediting_616317ENST00000331222.4chr8_1781182_+-2888.20-2887.60-2960.40
CAediting_616318ENST00000331222.4chr8_1781187_+-2887.30-2887.60-2960.40
CAediting_616319ENST00000331222.4chr8_1781197_+-2888.50-2887.60-2960.40
CAediting_616320ENST00000331222.4chr8_1781198_+-2887.60-2887.60-2960.40
CAediting_616321ENST00000331222.4chr8_1781199_+-2887.60-2887.60-2960.40
CAediting_616322ENST00000331222.4chr8_1781202_+-2888.80-2887.60-2960.40
CAediting_616323ENST00000331222.4chr8_1781205_+-2891.00-2887.60-2960.40
CAediting_616324ENST00000331222.4chr8_1781206_+-2887.60-2887.60-2960.40
CAediting_616325ENST00000331222.4chr8_1781207_+-2888.50-2887.60-2960.40
CAediting_616326ENST00000331222.4chr8_1781208_+-2888.40-2887.60-2960.40
CAediting_616327ENST00000331222.4chr8_1781211_+-2887.60-2887.60-2960.40
CAediting_616328ENST00000331222.4chr8_1781227_+-2887.20-2887.60-2960.40
CAediting_616329ENST00000331222.4chr8_1781231_+-2891.40-2887.60-2960.40
CAediting_616330ENST00000331222.4chr8_1781238_+-2887.60-2887.60-2960.40
CAediting_616331ENST00000331222.4chr8_1781243_+-2889.90-2887.60-2960.40
CAediting_616332ENST00000331222.4chr8_1781260_+-2890.90-2887.60-2960.40
CAediting_616333ENST00000331222.4chr8_1781267_+-2886.70-2887.60-2960.40
CAediting_616334ENST00000331222.4chr8_1781270_+-2890.50-2887.60-2960.40
CAediting_616335ENST00000331222.4chr8_1781278_+-2887.60-2887.60-2960.40
CAediting_616336ENST00000331222.4chr8_1781279_+-2888.60-2887.60-2960.40
CAediting_616337ENST00000331222.4chr8_1781286_+-2887.30-2887.60-2960.40
CAediting_616338ENST00000331222.4chr8_1781292_+-2889.30-2887.60-2960.40
CAediting_616339ENST00000331222.4chr8_1781299_+-2886.90-2887.60-2960.40
CAediting_616340ENST00000331222.4chr8_1781303_+-2892.70-2887.60-2960.40
CAediting_616341ENST00000331222.4chr8_1781308_+-2889.10-2887.60-2960.40
CAediting_616342ENST00000331222.4chr8_1781353_+-2888.10-2887.60-2960.40
CAediting_616343ENST00000331222.4chr8_1781354_+-2886.90-2887.60-2960.40
CAediting_616344ENST00000331222.4chr8_1782164_+-2886.70-2887.60-2960.40
CAediting_616345ENST00000331222.4chr8_1782195_+-2886.70-2887.60-2960.40
CAediting_616346ENST00000331222.4chr8_1782209_+-2887.00-2887.60-2960.40
CAediting_616347ENST00000331222.4chr8_1782219_+-2887.20-2887.60-2960.40
CAediting_616348ENST00000331222.4chr8_1782224_+-2887.30-2887.60-2960.40
CAediting_616349ENST00000331222.4chr8_1782231_+-2891.50-2887.60-2960.40
CAediting_616350ENST00000331222.4chr8_1782245_+-2887.60-2887.60-2960.40
CAediting_616351ENST00000331222.4chr8_1782262_+-2887.60-2887.60-2960.40
CAediting_616352ENST00000331222.4chr8_1782270_+-2887.30-2887.60-2960.40
CAediting_616353ENST00000331222.4chr8_1782271_+-2887.30-2887.60-2960.40
CAediting_616354ENST00000331222.4chr8_1782274_+-2887.30-2887.60-2960.40
CAediting_616355ENST00000331222.4chr8_1782290_+-2888.00-2887.60-2960.40
CAediting_616356ENST00000331222.4chr8_1782319_+-2887.60-2887.60-2960.40
CAediting_616357ENST00000331222.4chr8_1782325_+-2887.30-2887.60-2960.40
CAediting_616358ENST00000331222.4chr8_1782328_+-2887.30-2887.60-2960.40
CAediting_616359ENST00000331222.4chr8_1782330_+-2886.70-2887.60-2960.40
CAediting_616360ENST00000331222.4chr8_1782332_+-2886.20-2887.60-2960.40
CAediting_616361ENST00000331222.4chr8_1782334_+-2891.40-2887.60-2960.40
CAediting_616362ENST00000331222.4chr8_1782342_+-2887.20-2887.60-2960.40
CAediting_616363ENST00000331222.4chr8_1782354_+-2886.90-2887.60-2960.40
CAediting_616364ENST00000331222.4chr8_1782374_+-2887.00-2887.60-2960.40
CAediting_616365ENST00000331222.4chr8_1782377_+-2888.60-2887.60-2960.40
CAediting_616366ENST00000331222.4chr8_1782379_+-2888.30-2887.60-2960.40
CAediting_616367ENST00000331222.4chr8_1782380_+-2887.20-2887.60-2960.40
CAediting_616368ENST00000331222.4chr8_1782384_+-2887.00-2887.60-2960.40
CAediting_616369ENST00000331222.4chr8_1782392_+-2893.00-2887.60-2960.40
CAediting_616370ENST00000331222.4chr8_1782405_+-2887.30-2887.60-2960.40
CAediting_616371ENST00000331222.4chr8_1782406_+-2887.70-2887.60-2960.40
CAediting_616372ENST00000331222.4chr8_1782407_+-2887.30-2887.60-2960.40
CAediting_616373ENST00000331222.4chr8_1782416_+-2887.00-2887.60-2960.40
CAediting_616374ENST00000331222.4chr8_1782419_+-2887.60-2887.60-2960.40
CAediting_616375ENST00000331222.4chr8_1782432_+-2887.20-2887.60-2960.40
CAediting_616376ENST00000331222.4chr8_1784008_+-2893.80-2887.60-2960.40
CAediting_616377ENST00000331222.4chr8_1784012_+-2889.50-2887.60-2960.40
CAediting_616378ENST00000331222.4chr8_1784022_+-2887.20-2887.60-2960.40
CAediting_616379ENST00000331222.4chr8_1784030_+-2887.70-2887.60-2960.40
CAediting_616380ENST00000331222.4chr8_1784031_+-2887.60-2887.60-2960.40
CAediting_616381ENST00000331222.4chr8_1784036_+-2886.90-2887.60-2960.40
CAediting_616382ENST00000331222.4chr8_1784076_+-2886.90-2887.60-2960.40
CAediting_616383ENST00000331222.4chr8_1784086_+-2894.00-2887.60-2960.40
CAediting_616384ENST00000331222.4chr8_1784099_+-2887.30-2887.60-2960.40
CAediting_616385ENST00000331222.4chr8_1784108_+-2887.10-2887.60-2960.40
CAediting_616386ENST00000331222.4chr8_1784109_+-2887.70-2887.60-2960.40
CAediting_616387ENST00000331222.4chr8_1784110_+-2887.60-2887.60-2960.40
CAediting_616388ENST00000331222.4chr8_1784115_+-2891.00-2887.60-2960.40
CAediting_616389ENST00000331222.4chr8_1784121_+-2887.60-2887.60-2960.40
CAediting_616390ENST00000331222.4chr8_1784126_+-2887.70-2887.60-2960.40
CAediting_616391ENST00000331222.4chr8_1784128_+-2887.30-2887.60-2960.40
CAediting_616392ENST00000331222.4chr8_1784134_+-2887.70-2887.60-2960.40
CAediting_616393ENST00000331222.4chr8_1784135_+-2887.30-2887.60-2960.40
CAediting_616394ENST00000331222.4chr8_1784170_+-2886.90-2887.60-2960.40
CAediting_616395ENST00000331222.4chr8_1784174_+-2887.60-2887.60-2960.40
CAediting_616396ENST00000331222.4chr8_1784181_+-2886.80-2887.60-2960.40
CAediting_616397ENST00000331222.4chr8_1784186_+-2893.60-2887.60-2960.40
CAediting_616398ENST00000331222.4chr8_1784187_+-2887.60-2887.60-2960.40
CAediting_616399ENST00000331222.4chr8_1784193_+-2894.50-2887.60-2960.40
CAediting_616400ENST00000331222.4chr8_1784197_+-2887.60-2887.60-2960.40
CAediting_616401ENST00000331222.4chr8_1784205_+-2887.10-2887.60-2960.40
CAediting_616402ENST00000331222.4chr8_1784206_+-2887.60-2887.60-2960.40
CAediting_616403ENST00000331222.4chr8_1784213_+-2886.70-2887.60-2960.40
CAediting_616404ENST00000331222.4chr8_1784217_+-2892.30-2887.60-2960.40
CAediting_616405ENST00000331222.4chr8_1784221_+-2894.30-2887.60-2960.40
CAediting_616406ENST00000331222.4chr8_1784230_+-2886.70-2887.60-2960.40
CAediting_616407ENST00000331222.4chr8_1784235_+-2886.70-2887.60-2960.40
CAediting_616408ENST00000331222.4chr8_1784237_+-2887.00-2887.60-2960.40
CAediting_616409ENST00000331222.4chr8_1784240_+-2887.20-2887.60-2960.40
CAediting_616410ENST00000331222.4chr8_1784269_+-2887.60-2887.60-2960.40
CAediting_616411ENST00000331222.4chr8_1784273_+-2887.60-2887.60-2960.40

Top

Relation with ADAR for CLN8

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_616344chr8_1782164_+5.13996184085399e-060.178005600788983....
CESCCAediting_616344chr8_1782164_+..0.03447534694754330.149610660922937..
SKCMCAediting_616344chr8_1782164_+0.01771774067476690.156599661855505....
SARCCAediting_616344chr8_1782164_+0.04043112314887980.174063399045126....
LGGCAediting_616348chr8_1782224_+0.004187106719786080.364557097601149....
BRCACAediting_616348chr8_1782224_+....0.008954632626296790.20109467123169
CESCCAediting_616348chr8_1782224_+0.008653139645444530.333376970496487....
SKCMCAediting_616348chr8_1782224_+....0.01893531249442260.286071133653258
LGGCAediting_616349chr8_1782231_+0.0005188613461141810.342564629535814....
BRCACAediting_616353chr8_1782271_+0.01053966874305220.245189615140117....
LUADCAediting_616353chr8_1782271_+0.009957945983048820.344715798527668....
BRCACAediting_616354chr8_1782274_+....0.004974334516509760.288916757400954
LGGCAediting_616357chr8_1782325_+9.92931774420931e-050.29323334271341....
BRCACAediting_616357chr8_1782325_+0.001575811034214050.17848445857594....
LIHCCAediting_616357chr8_1782325_+0.01375599971041010.321831711271571....
LUADCAediting_616357chr8_1782325_+1.34084173696293e-060.472420679438845....
HNSCCAediting_616357chr8_1782325_+0.00772664429672390.233553807617398....
LGGCAediting_616358chr8_1782328_+0.0009912926715744320.313943759825344....
GBMCAediting_616358chr8_1782328_+0.04121972295866480.257976225808018....
STADCAediting_616361chr8_1782334_+0.01987232037392230.292796360563804....
LGGCAediting_616362chr8_1782342_+0.0006626898727764460.430632744702717....
GBMCAediting_616404chr8_1784217_+0.0177036893610830.237957971118063....
ESCACAediting_616404chr8_1784217_+0.02589242481998340.278433395378305..0.0235763539052330.282766105300253

Top

Relation with cancer stages for CLN8

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
KIRCpathologic_stageCAediting_616344chr8_1782164_+3.12701566837227e-080.272314302216067
KIRCpathologic_stageCAediting_616348chr8_1782224_+0.008588767659053950.318642533107834
KIRCpathologic_stageCAediting_616357chr8_1782325_+0.01242737745208520.201667460607381
KIRCpathologic_stageCAediting_616361chr8_1782334_+0.003988648010620630.277417482221979
KIRPclinical_stageCAediting_616344chr8_1782164_+0.002861023517244440.248525910253291
KIRPpathologic_stageCAediting_616344chr8_1782164_+0.009020704672939610.191502073930297
LUSCpathologic_stageCAediting_616344chr8_1782164_+0.001280696404905810.202567388664279

Top

Relation with survival for CLN8

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
HNSCCAediting_616348chr8_1782224_+0.02301305522674090.002951775446.38

Top

RelatedDrugs for CLN8

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for CLN8

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
CLN8C1838570CEROID LIPOFUSCINOSIS, NEURONAL, 89CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
CLN8C1864923Northern epilepsy syndrome4CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT