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Editing gene: SPNS3 (CAeditome ID:201305)

Gene summary for SPNS3

Gene summary

Gene information	Gene symbol	SPNS3
	Gene ID	201305
	Gene name	sphingolipid transporter 3 (putative)
	Synonyms	SLC62A3\|SLC63A3
	Cytomap	17p13.2
	Type of gene	protein-coding
	Description	protein spinster homolog 3SPNS sphingolipid transporter 3 (putative)spinster homolog 3
	Modification date	20210518
	UniProtAcc	Q6ZMD2
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for SPNS3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000182557.6

RNA A-to-I editing events in Cancer.

CAediting_1156820(4437994, +), CAediting_1156821(4441241, +), CAediting_1156822(4441280, +), CAediting_1156823(4441290, +), CAediting_1156824(4441308, +), CAediting_1156825(4441341, +), CAediting_1156826(4441696, +), CAediting_1156827(4441697, +), CAediting_1156828(4441701, +), CAediting_1156829(4441714, +), CAediting_1156830(4441726, +), CAediting_1156831(4441733, +), CAediting_1156832(4441736, +), CAediting_1156833(4441777, +), CAediting_1156834(4441780, +), CAediting_1156835(4441824, +), CAediting_1156836(4441837, +), CAediting_1156837(4441876, +), CAediting_1156838(4441877, +), CAediting_1156839(4442274, +), CAediting_1156840(4442282, +), CAediting_1156841(4442283, +), CAediting_1156842(4442318, +), CAediting_1156843(4442326, +), CAediting_1156844(4442422, +), CAediting_1156845(4442465, +), CAediting_1156846(4442474, +), CAediting_1156847(4442483, +), CAediting_1156848(4442485, +), CAediting_1156849(4442520, +), CAediting_1156850(4442533, +), CAediting_1156851(4442547, +), CAediting_1156852(4443164, +), CAediting_1156853(4443171, +), CAediting_1156854(4443174, +), CAediting_1156855(4443175, +), CAediting_1156856(4443200, +), CAediting_1156857(4443210, +), CAediting_1156858(4443232, +), CAediting_1156859(4443237, +), CAediting_1156860(4443245, +), CAediting_1156861(4443251, +), CAediting_1156862(4443254, +), CAediting_1156863(4443271, +), CAediting_1156864(4443293, +), CAediting_1156865(4443331, +), CAediting_1156866(4443332, +), CAediting_1156867(4443333, +), CAediting_1156868(4443345, +), CAediting_1156869(4443354, +), CAediting_1156870(4443815, +), CAediting_1156871(4443827, +), CAediting_1156872(4443829, +), CAediting_1156873(4443854, +), CAediting_1156874(4443859, +), CAediting_1156875(4443868, +), CAediting_1156876(4443915, +), CAediting_1156877(4443917, +), CAediting_1156878(4443951, +), CAediting_1156879(4443954, +), CAediting_1156880(4443970, +), CAediting_1156881(4443980, +), CAediting_1156882(4443987, +), CAediting_1156883(4444021, +), CAediting_1156884(4444026, +), CAediting_1156885(4444051, +), CAediting_1156886(4444105, +), CAediting_1156887(4444240, +), CAediting_1156888(4444315, +), CAediting_1156889(4444316, +), CAediting_1156890(4444356, +), CAediting_1156891(4444432, +), CAediting_1156892(4444444, +), CAediting_1156893(4444452, +), CAediting_1156894(4444457, +), CAediting_1156895(4444475, +), CAediting_1156896(4444483, +), CAediting_1156897(4444497, +), CAediting_1156898(4444506, +), CAediting_1156899(4454721, +), CAediting_1156900(4456161, +), CAediting_1156901(4456581, +), CAediting_1156902(4456625, +), CAediting_1156903(4456626, +), CAediting_1156904(4457158, +), CAediting_1156905(4457160, +), CAediting_1156906(4457172, +), CAediting_1156907(4457189, +), CAediting_1156908(4457196, +), CAediting_1156909(4457227, +), CAediting_1156910(4457234, +), CAediting_1156911(4457241, +), CAediting_1156912(4457245, +), CAediting_1156913(4457253, +), CAediting_1156914(4457271, +), CAediting_1156915(4457347, +), CAediting_1156916(4460649, +), CAediting_1156917(4463211, +), CAediting_1156918(4463212, +), CAediting_1156919(4463222, +), CAediting_1156920(4463233, +), CAediting_1156921(4463248, +), CAediting_1156922(4463255, +), CAediting_1156923(4463276, +), CAediting_1156924(4463277, +), CAediting_1156925(4463628, +), CAediting_1156926(4464943, +), CAediting_1156927(4465513, +), CAediting_1156928(4465518, +), CAediting_1156929(4465526, +), CAediting_1156930(4465527, +), CAediting_1156931(4465537, +), CAediting_1156932(4465577, +), CAediting_1156933(4467905, +), CAediting_1156934(4469203, +), CAediting_1156935(4469448, +), CAediting_1156936(4469498, +), CAediting_1156937(4469512, +), CAediting_1156938(4469516, +), CAediting_1156939(4469534, +), CAediting_1156940(4469560, +), CAediting_1156941(4469564, +), CAediting_1156942(4469568, +), CAediting_1156943(4471605, +), CAediting_1156944(4471701, +),

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RNA editing positional annotations for SPNS3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1156820	chr17_4437994_+	ncRNA_intronic
CAediting_1156821	chr17_4441241_+	ncRNA_intronic
CAediting_1156822	chr17_4441280_+	ncRNA_intronic
CAediting_1156823	chr17_4441290_+	ncRNA_intronic
CAediting_1156824	chr17_4441308_+	ncRNA_intronic
CAediting_1156825	chr17_4441341_+	ncRNA_intronic
CAediting_1156826	chr17_4441696_+	ncRNA_intronic
CAediting_1156827	chr17_4441697_+	ncRNA_intronic
CAediting_1156828	chr17_4441701_+	ncRNA_intronic
CAediting_1156829	chr17_4441714_+	ncRNA_intronic
CAediting_1156830	chr17_4441726_+	ncRNA_intronic
CAediting_1156831	chr17_4441733_+	ncRNA_intronic
CAediting_1156832	chr17_4441736_+	ncRNA_intronic
CAediting_1156833	chr17_4441777_+	ncRNA_intronic
CAediting_1156834	chr17_4441780_+	ncRNA_intronic
CAediting_1156835	chr17_4441824_+	ncRNA_intronic
CAediting_1156836	chr17_4441837_+	ncRNA_intronic
CAediting_1156837	chr17_4441876_+	ncRNA_intronic
CAediting_1156838	chr17_4441877_+	ncRNA_intronic
CAediting_1156839	chr17_4442274_+	ncRNA_intronic
CAediting_1156840	chr17_4442282_+	ncRNA_intronic
CAediting_1156841	chr17_4442283_+	ncRNA_intronic
CAediting_1156842	chr17_4442318_+	ncRNA_intronic
CAediting_1156843	chr17_4442326_+	ncRNA_intronic
CAediting_1156844	chr17_4442422_+	ncRNA_intronic
CAediting_1156845	chr17_4442465_+	ncRNA_intronic
CAediting_1156846	chr17_4442474_+	ncRNA_intronic
CAediting_1156847	chr17_4442483_+	ncRNA_intronic
CAediting_1156848	chr17_4442485_+	ncRNA_intronic
CAediting_1156849	chr17_4442520_+	ncRNA_intronic
CAediting_1156850	chr17_4442533_+	ncRNA_intronic
CAediting_1156851	chr17_4442547_+	ncRNA_intronic
CAediting_1156852	chr17_4443164_+	ncRNA_intronic
CAediting_1156853	chr17_4443171_+	ncRNA_intronic
CAediting_1156854	chr17_4443174_+	ncRNA_intronic
CAediting_1156855	chr17_4443175_+	ncRNA_intronic
CAediting_1156856	chr17_4443200_+	ncRNA_intronic
CAediting_1156857	chr17_4443210_+	ncRNA_intronic
CAediting_1156858	chr17_4443232_+	ncRNA_intronic
CAediting_1156859	chr17_4443237_+	ncRNA_intronic
CAediting_1156860	chr17_4443245_+	ncRNA_intronic
CAediting_1156861	chr17_4443251_+	ncRNA_intronic
CAediting_1156862	chr17_4443254_+	ncRNA_intronic
CAediting_1156863	chr17_4443271_+	ncRNA_intronic
CAediting_1156864	chr17_4443293_+	ncRNA_intronic
CAediting_1156865	chr17_4443331_+	ncRNA_intronic
CAediting_1156866	chr17_4443332_+	ncRNA_intronic
CAediting_1156867	chr17_4443333_+	ncRNA_intronic
CAediting_1156868	chr17_4443345_+	ncRNA_intronic
CAediting_1156869	chr17_4443354_+	ncRNA_intronic
CAediting_1156870	chr17_4443815_+	ncRNA_intronic
CAediting_1156871	chr17_4443827_+	ncRNA_intronic
CAediting_1156872	chr17_4443829_+	ncRNA_intronic
CAediting_1156873	chr17_4443854_+	ncRNA_intronic
CAediting_1156874	chr17_4443859_+	ncRNA_intronic
CAediting_1156875	chr17_4443868_+	ncRNA_intronic
CAediting_1156876	chr17_4443915_+	ncRNA_intronic
CAediting_1156877	chr17_4443917_+	ncRNA_intronic
CAediting_1156878	chr17_4443951_+	ncRNA_intronic
CAediting_1156879	chr17_4443954_+	ncRNA_intronic
CAediting_1156880	chr17_4443970_+	ncRNA_intronic
CAediting_1156881	chr17_4443980_+	ncRNA_intronic
CAediting_1156882	chr17_4443987_+	ncRNA_intronic
CAediting_1156883	chr17_4444021_+	ncRNA_intronic
CAediting_1156884	chr17_4444026_+	ncRNA_intronic
CAediting_1156885	chr17_4444051_+	ncRNA_intronic
CAediting_1156886	chr17_4444105_+	ncRNA_intronic
CAediting_1156887	chr17_4444240_+	ncRNA_intronic
CAediting_1156888	chr17_4444315_+	ncRNA_intronic
CAediting_1156889	chr17_4444316_+	ncRNA_intronic
CAediting_1156890	chr17_4444356_+	ncRNA_intronic
CAediting_1156891	chr17_4444432_+	ncRNA_intronic
CAediting_1156892	chr17_4444444_+	ncRNA_intronic
CAediting_1156893	chr17_4444452_+	ncRNA_intronic
CAediting_1156894	chr17_4444457_+	ncRNA_intronic
CAediting_1156895	chr17_4444475_+	ncRNA_intronic
CAediting_1156896	chr17_4444483_+	ncRNA_intronic
CAediting_1156897	chr17_4444497_+	ncRNA_intronic
CAediting_1156898	chr17_4444506_+	ncRNA_intronic
CAediting_1156899	chr17_4454721_+	intronic
CAediting_1156900	chr17_4456161_+	intronic
CAediting_1156901	chr17_4456581_+	intronic
CAediting_1156902	chr17_4456625_+	intronic
CAediting_1156903	chr17_4456626_+	intronic
CAediting_1156904	chr17_4457158_+	intronic
CAediting_1156905	chr17_4457160_+	intronic
CAediting_1156906	chr17_4457172_+	intronic
CAediting_1156907	chr17_4457189_+	intronic
CAediting_1156908	chr17_4457196_+	intronic
CAediting_1156909	chr17_4457227_+	intronic
CAediting_1156910	chr17_4457234_+	intronic
CAediting_1156911	chr17_4457241_+	intronic
CAediting_1156912	chr17_4457245_+	intronic
CAediting_1156913	chr17_4457253_+	intronic
CAediting_1156914	chr17_4457271_+	intronic
CAediting_1156915	chr17_4457347_+	intronic
CAediting_1156916	chr17_4460649_+	intronic
CAediting_1156917	chr17_4463211_+	intronic
CAediting_1156918	chr17_4463212_+	intronic
CAediting_1156919	chr17_4463222_+	intronic
CAediting_1156920	chr17_4463233_+	intronic
CAediting_1156921	chr17_4463248_+	intronic
CAediting_1156922	chr17_4463255_+	intronic
CAediting_1156923	chr17_4463276_+	intronic
CAediting_1156924	chr17_4463277_+	intronic
CAediting_1156925	chr17_4463628_+	intronic
CAediting_1156926	chr17_4464943_+	intronic
CAediting_1156927	chr17_4465513_+	intronic
CAediting_1156928	chr17_4465518_+	intronic
CAediting_1156929	chr17_4465526_+	intronic
CAediting_1156930	chr17_4465527_+	intronic
CAediting_1156931	chr17_4465537_+	intronic
CAediting_1156932	chr17_4465577_+	intronic
CAediting_1156933	chr17_4467905_+	intronic
CAediting_1156934	chr17_4469203_+	intronic
CAediting_1156935	chr17_4469448_+	intronic
CAediting_1156936	chr17_4469498_+	intronic
CAediting_1156937	chr17_4469512_+	intronic
CAediting_1156938	chr17_4469516_+	intronic
CAediting_1156939	chr17_4469534_+	intronic
CAediting_1156940	chr17_4469560_+	intronic
CAediting_1156941	chr17_4469564_+	intronic
CAediting_1156942	chr17_4469568_+	intronic
CAediting_1156943	chr17_4471605_+	intronic
CAediting_1156944	chr17_4471701_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1156820	chr17_4437994_+	SINE	Alu	AluSc8
CAediting_1156821	chr17_4441241_+	DNA	hAT-Charlie	Charlie2b
CAediting_1156822	chr17_4441280_+	SINE	Alu	FLAM_C
CAediting_1156823	chr17_4441290_+	SINE	Alu	FLAM_C
CAediting_1156824	chr17_4441308_+	SINE	Alu	FLAM_C
CAediting_1156825	chr17_4441341_+	SINE	Alu	FLAM_C
CAediting_1156826	chr17_4441696_+	SINE	Alu	AluSq2
CAediting_1156827	chr17_4441697_+	SINE	Alu	AluSq2
CAediting_1156828	chr17_4441701_+	SINE	Alu	AluSq2
CAediting_1156829	chr17_4441714_+	SINE	Alu	AluSq2
CAediting_1156830	chr17_4441726_+	SINE	Alu	AluSq2
CAediting_1156831	chr17_4441733_+	SINE	Alu	AluSq2
CAediting_1156832	chr17_4441736_+	SINE	Alu	AluSq2
CAediting_1156833	chr17_4441777_+	SINE	Alu	AluSq2
CAediting_1156834	chr17_4441780_+	SINE	Alu	AluSq2
CAediting_1156835	chr17_4441824_+	SINE	Alu	AluSq2
CAediting_1156836	chr17_4441837_+	SINE	Alu	AluSq2
CAediting_1156837	chr17_4441876_+	SINE	Alu	AluSq2
CAediting_1156838	chr17_4441877_+	SINE	Alu	AluSq2
CAediting_1156839	chr17_4442274_+	SINE	Alu	AluSx1
CAediting_1156840	chr17_4442282_+	SINE	Alu	AluSx1
CAediting_1156841	chr17_4442283_+	SINE	Alu	AluSx1
CAediting_1156842	chr17_4442318_+	SINE	Alu	AluSx1
CAediting_1156843	chr17_4442326_+	SINE	Alu	AluSx1
CAediting_1156844	chr17_4442422_+	SINE	Alu	AluSx1
CAediting_1156845	chr17_4442465_+	SINE	Alu	AluSx1
CAediting_1156846	chr17_4442474_+	SINE	Alu	AluSx1
CAediting_1156847	chr17_4442483_+	SINE	Alu	AluSx1
CAediting_1156848	chr17_4442485_+	SINE	Alu	AluSx1
CAediting_1156849	chr17_4442520_+	SINE	Alu	AluSx1
CAediting_1156850	chr17_4442533_+	SINE	Alu	AluSx1
CAediting_1156851	chr17_4442547_+	SINE	Alu	AluSx1
CAediting_1156852	chr17_4443164_+	SINE	Alu	AluSx1
CAediting_1156853	chr17_4443171_+	SINE	Alu	AluSx1
CAediting_1156854	chr17_4443174_+	SINE	Alu	AluSx1
CAediting_1156855	chr17_4443175_+	SINE	Alu	AluSx1
CAediting_1156856	chr17_4443200_+	SINE	Alu	AluSx1
CAediting_1156857	chr17_4443210_+	SINE	Alu	AluSx1
CAediting_1156858	chr17_4443232_+	SINE	Alu	AluSx1
CAediting_1156859	chr17_4443237_+	SINE	Alu	AluSx1
CAediting_1156860	chr17_4443245_+	SINE	Alu	AluSx1
CAediting_1156861	chr17_4443251_+	SINE	Alu	AluSx1
CAediting_1156862	chr17_4443254_+	SINE	Alu	AluSx1
CAediting_1156863	chr17_4443271_+	SINE	Alu	AluSx1
CAediting_1156864	chr17_4443293_+	SINE	Alu	AluSx1
CAediting_1156865	chr17_4443331_+	SINE	Alu	AluSx1
CAediting_1156866	chr17_4443332_+	SINE	Alu	AluSx1
CAediting_1156867	chr17_4443333_+	SINE	Alu	AluSx1
CAediting_1156868	chr17_4443345_+	SINE	Alu	AluSx1
CAediting_1156869	chr17_4443354_+	SINE	Alu	AluSx1
CAediting_1156871	chr17_4443827_+	SINE	Alu	AluJb
CAediting_1156872	chr17_4443829_+	SINE	Alu	AluJb
CAediting_1156873	chr17_4443854_+	SINE	Alu	AluJb
CAediting_1156874	chr17_4443859_+	SINE	Alu	AluJb
CAediting_1156875	chr17_4443868_+	SINE	Alu	AluJb
CAediting_1156876	chr17_4443915_+	SINE	Alu	AluJb
CAediting_1156877	chr17_4443917_+	SINE	Alu	AluJb
CAediting_1156878	chr17_4443951_+	SINE	Alu	AluJb
CAediting_1156879	chr17_4443954_+	SINE	Alu	AluJb
CAediting_1156880	chr17_4443970_+	SINE	Alu	AluJb
CAediting_1156881	chr17_4443980_+	SINE	Alu	AluJb
CAediting_1156882	chr17_4443987_+	SINE	Alu	AluJb
CAediting_1156883	chr17_4444021_+	SINE	Alu	AluJb
CAediting_1156884	chr17_4444026_+	SINE	Alu	AluJb
CAediting_1156885	chr17_4444051_+	SINE	Alu	AluJb
CAediting_1156886	chr17_4444105_+	SINE	Alu	AluJb
CAediting_1156887	chr17_4444240_+	SINE	Alu	AluSx1
CAediting_1156888	chr17_4444315_+	SINE	Alu	AluSx1
CAediting_1156889	chr17_4444316_+	SINE	Alu	AluSx1
CAediting_1156890	chr17_4444356_+	SINE	Alu	AluSx1
CAediting_1156891	chr17_4444432_+	SINE	Alu	AluSx1
CAediting_1156892	chr17_4444444_+	SINE	Alu	AluSx1
CAediting_1156893	chr17_4444452_+	SINE	Alu	AluSx1
CAediting_1156894	chr17_4444457_+	SINE	Alu	AluSx1
CAediting_1156895	chr17_4444475_+	SINE	Alu	AluSx1
CAediting_1156896	chr17_4444483_+	SINE	Alu	AluSx1
CAediting_1156897	chr17_4444497_+	SINE	Alu	AluSx1
CAediting_1156898	chr17_4444506_+	SINE	Alu	AluSx1
CAediting_1156899	chr17_4454721_+	SINE	Alu	AluSx3
CAediting_1156900	chr17_4456161_+	SINE	Alu	AluJo
CAediting_1156901	chr17_4456581_+	SINE	Alu	AluSx
CAediting_1156902	chr17_4456625_+	SINE	Alu	AluSx
CAediting_1156903	chr17_4456626_+	SINE	Alu	AluSx
CAediting_1156904	chr17_4457158_+	SINE	Alu	AluJo
CAediting_1156905	chr17_4457160_+	SINE	Alu	AluJo
CAediting_1156906	chr17_4457172_+	SINE	Alu	AluJo
CAediting_1156907	chr17_4457189_+	SINE	Alu	AluJo
CAediting_1156908	chr17_4457196_+	SINE	Alu	AluJo
CAediting_1156909	chr17_4457227_+	SINE	Alu	AluJo
CAediting_1156910	chr17_4457234_+	SINE	Alu	AluJo
CAediting_1156911	chr17_4457241_+	SINE	Alu	AluJo
CAediting_1156912	chr17_4457245_+	SINE	Alu	AluJo
CAediting_1156913	chr17_4457253_+	SINE	Alu	AluJo
CAediting_1156914	chr17_4457271_+	SINE	Alu	AluJo
CAediting_1156915	chr17_4457347_+	SINE	Alu	AluJo
CAediting_1156916	chr17_4460649_+	SINE	Alu	AluY
CAediting_1156917	chr17_4463211_+	SINE	Alu	AluSx1
CAediting_1156918	chr17_4463212_+	SINE	Alu	AluSx1
CAediting_1156919	chr17_4463222_+	SINE	Alu	AluSx1
CAediting_1156920	chr17_4463233_+	SINE	Alu	AluSx1
CAediting_1156921	chr17_4463248_+	SINE	Alu	AluSx1
CAediting_1156922	chr17_4463255_+	SINE	Alu	AluSx1
CAediting_1156923	chr17_4463276_+	SINE	Alu	AluSx1
CAediting_1156924	chr17_4463277_+	SINE	Alu	AluSx1
CAediting_1156925	chr17_4463628_+	SINE	Alu	AluSz
CAediting_1156926	chr17_4464943_+	SINE	Alu	AluSq
CAediting_1156927	chr17_4465513_+	SINE	Alu	AluSx1
CAediting_1156928	chr17_4465518_+	SINE	Alu	AluSx1
CAediting_1156929	chr17_4465526_+	SINE	Alu	AluSx1
CAediting_1156930	chr17_4465527_+	SINE	Alu	AluSx1
CAediting_1156931	chr17_4465537_+	SINE	Alu	AluSx1
CAediting_1156932	chr17_4465577_+	SINE	Alu	AluSx1
CAediting_1156933	chr17_4467905_+	SINE	Alu	AluSx1
CAediting_1156934	chr17_4469203_+	SINE	Alu	AluJb
CAediting_1156935	chr17_4469448_+	SINE	Alu	AluSx1
CAediting_1156936	chr17_4469498_+	SINE	Alu	AluSx1
CAediting_1156937	chr17_4469512_+	SINE	Alu	AluSx1
CAediting_1156938	chr17_4469516_+	SINE	Alu	AluSx1
CAediting_1156939	chr17_4469534_+	SINE	Alu	AluSx1
CAediting_1156940	chr17_4469560_+	SINE	Alu	AluSx1
CAediting_1156941	chr17_4469564_+	SINE	Alu	AluSx1
CAediting_1156942	chr17_4469568_+	SINE	Alu	AluSx1
CAediting_1156943	chr17_4471605_+	SINE	Alu	AluJb
CAediting_1156944	chr17_4471701_+	SINE	Alu	AluJb

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RNA A-to-I editing events in the alternative splicing sites for SPNS3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000182557.6.SPNS3.

Correlation between RNA A-to-I editing and PSI for ENSG00000182557.6.SPNS3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SPNS3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SPNS3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SPNS3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000182557.6	ENST00000575194	hsa-miR-624-3p	4488037	4488043	7mer-m8	4488024	4488044	151	-19.71

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SPNS3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SPNS3

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for SPNS3

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SPNS3

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
LAML	CAediting_1156825	chr17_4441341_+	0.0432064402938296	0.0472544	13.8345

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RelatedDrugs for SPNS3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SPNS3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene