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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: EIF2S1 (CAeditome ID:1965)

Gene summary for EIF2S1

check button Gene summary
Gene informationGene symbol

EIF2S1

Gene ID

1965

Gene nameeukaryotic translation initiation factor 2 subunit alpha
SynonymsEIF-2|EIF-2A|EIF-2alpha|EIF2|EIF2A
Cytomap

14q23.3

Type of geneprotein-coding
Descriptioneukaryotic translation initiation factor 2 subunit 1eIF-2-alphaeukaryotic translation initiation factor 2, subunit 1 alpha, 35kDa
Modification date20210518
UniProtAcc

P05198

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
EIF2S1

GO:0003743

Eukaryotic translation initiation factor 2 subunit 1

16289705

EIF2S1

GO:0043022

Eukaryotic translation initiation factor 2 subunit 1

17894550

EIF2S1

GO:0034976

Eukaryotic translation initiation factor 2 subunit 1

33384352

EIF2S1

GO:0036499

Eukaryotic translation initiation factor 2 subunit 1

33384352

EIF2S1

GO:0005829

Eukaryotic translation initiation factor 2 subunit 1

0000052

EIF2S1

GO:0005850

Eukaryotic translation initiation factor 2 subunit 1

23063529

EIF2S1

GO:0005851

Eukaryotic translation initiation factor 2 subunit 1

11323413


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RNA A-to-I events for EIF2S1

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000134001.11
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_998853(67366144, +), CAediting_998854(67366226, +), CAediting_998855(67366260, +), CAediting_998856(67366289, +), CAediting_998857(67367659, +), CAediting_998858(67367672, +), CAediting_998859(67367675, +), CAediting_998860(67367715, +), CAediting_998861(67367738, +), CAediting_998862(67370830, +), CAediting_998863(67370873, +), CAediting_998864(67370874, +), CAediting_998865(67370875, +), CAediting_998866(67371137, +), CAediting_998867(67371141, +), CAediting_998868(67371160, +), CAediting_998869(67371214, +), CAediting_998870(67371219, +), CAediting_998871(67382266, +), CAediting_998872(67382281, +), CAediting_998873(67384576, +), CAediting_998874(67384596, +), CAediting_998875(67384725, +), CAediting_998876(67384746, +), CAediting_998877(67384748, +), CAediting_998878(67385323, +), CAediting_998879(67385349, +), CAediting_998880(67385350, +), CAediting_998881(67385358, +), CAediting_998882(67385381, +), CAediting_998883(67385430, +),

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RNA editing positional annotations for EIF2S1 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_998853chr14_67366144_+ncRNA_intronic
CAediting_998854chr14_67366226_+ncRNA_intronic
CAediting_998855chr14_67366260_+ncRNA_intronic
CAediting_998856chr14_67366289_+ncRNA_intronic
CAediting_998857chr14_67367659_+ncRNA_intronic
CAediting_998858chr14_67367672_+ncRNA_intronic
CAediting_998859chr14_67367675_+ncRNA_intronic
CAediting_998860chr14_67367715_+ncRNA_intronic
CAediting_998861chr14_67367738_+ncRNA_intronic
CAediting_998862chr14_67370830_+ncRNA_intronic
CAediting_998863chr14_67370873_+ncRNA_intronic
CAediting_998864chr14_67370874_+ncRNA_intronic
CAediting_998865chr14_67370875_+ncRNA_intronic
CAediting_998866chr14_67371137_+ncRNA_intronic
CAediting_998867chr14_67371141_+ncRNA_intronic
CAediting_998868chr14_67371160_+ncRNA_intronic
CAediting_998869chr14_67371214_+ncRNA_intronic
CAediting_998870chr14_67371219_+ncRNA_intronic
CAediting_998871chr14_67382266_+intronic
CAediting_998872chr14_67382281_+intronic
CAediting_998873chr14_67384576_+UTR3
CAediting_998874chr14_67384596_+UTR3
CAediting_998875chr14_67384725_+UTR3
CAediting_998876chr14_67384746_+UTR3
CAediting_998877chr14_67384748_+UTR3
CAediting_998878chr14_67385323_+UTR3
CAediting_998879chr14_67385349_+UTR3
CAediting_998880chr14_67385350_+UTR3
CAediting_998881chr14_67385358_+UTR3
CAediting_998882chr14_67385381_+UTR3
CAediting_998883chr14_67385430_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_998853chr14_67366144_+SINEAluAluJo
CAediting_998854chr14_67366226_+SINEAluAluJo
CAediting_998855chr14_67366260_+SINEAluAluJo
CAediting_998856chr14_67366289_+SINEAluAluJo
CAediting_998857chr14_67367659_+SINEAluAluJb
CAediting_998858chr14_67367672_+SINEAluAluJb
CAediting_998859chr14_67367675_+SINEAluAluJb
CAediting_998860chr14_67367715_+SINEAluAluJb
CAediting_998861chr14_67367738_+SINEAluAluJb
CAediting_998862chr14_67370830_+SINEAluAluJb
CAediting_998863chr14_67370873_+SINEAluAluJb
CAediting_998864chr14_67370874_+SINEAluAluJb
CAediting_998865chr14_67370875_+SINEAluAluJb
CAediting_998866chr14_67371137_+SINEAluAluJr
CAediting_998867chr14_67371141_+SINEAluAluJr
CAediting_998868chr14_67371160_+SINEAluAluJr
CAediting_998869chr14_67371214_+SINEAluAluJr
CAediting_998870chr14_67371219_+SINEAluAluJr
CAediting_998878chr14_67385323_+SINEAluAluJr4
CAediting_998879chr14_67385349_+SINEAluAluJr4
CAediting_998880chr14_67385350_+SINEAluAluJr4
CAediting_998881chr14_67385358_+SINEAluAluJr4
CAediting_998882chr14_67385381_+SINEAluAluJr4
CAediting_998883chr14_67385430_+SINEAluAluJr4

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RNA A-to-I editing events in the alternative splicing sites for EIF2S1

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000134001.11.EIF2S1.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000134001.11.EIF2S1.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for EIF2S1

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for EIF2S1

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for EIF2S1

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_998878chr14_67385323_+ENSG00000134001.11ENST00000256383hsa-miR-6807-5p67385321673853277mer-m86738530567385328150.00-21.37
CAediting_998880chr14_67385350_+ENSG00000134001.11ENST00000256383hsa-miR-431367385348673853547mer-m86738533567385355146.00-20.12
CAediting_998873chr14_67384576_+ENSG00000134001.11ENST00000256383hsa-miR-7113-5p67384570673845778mer-1a6738455767384577145.00-21.21
CAediting_998883chr14_67385430_+ENSG00000134001.11ENST00000256383hsa-miR-391867385428673854347mer-m86738541567385435140.00-19.23
CAediting_998883chr14_67385430_+ENSG00000134001.11ENST00000256383hsa-miR-431267385425673854306mer6738541467385431147.00-32.00
CAediting_998883chr14_67385430_+ENSG00000134001.11ENST00000256383hsa-miR-451267385427673854337mer-m86738541367385434160.00-31.86
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378a-3p67384746673847538mer-1a6738473067384753154.00-18.74
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378b67384746673847538mer-1a6738473367384753155.00-20.66
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378c67384746673847538mer-1a6738472767384753161.00-20.73
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378d67384746673847538mer-1a6738473267384753152.00-17.06
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378d67384746673847538mer-1a6738473267384753152.00-17.06
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378e67384746673847538mer-1a6738473367384753152.00-16.93
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378f67384746673847538mer-1a6738473267384753156.00-18.74
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378h67384746673847538mer-1a6738473367384753145.00-15.74
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-378i67384746673847538mer-1a6738473167384753154.00-18.74
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-422a67384746673847538mer-1a6738473067384753154.00-18.74
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-5009-5p67384745673847517mer-m86738473167384752145.00-15.88
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-805867384745673847517mer-m86738473167384752147.00-15.12
CAediting_998881chr14_67385358_+ENSG00000134001.11ENST00000256383hsa-miR-874-3p67385355673853617mer-m86738534167385362160.00-33.53

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_998883chr14_67385430_+ENSG00000134001.11ENST00000256383hsa-miR-118267385427673854337mer-m86738541267385434150-19.57
CAediting_998882chr14_67385381_+ENSG00000134001.11ENST00000256383hsa-miR-193a-3p67385376673853827mer-m86738536467385383152-20.35
CAediting_998883chr14_67385430_+ENSG00000134001.11ENST00000256383hsa-miR-193a-5p67385426673854327mer-m86738541367385433141-13.52
CAediting_998882chr14_67385381_+ENSG00000134001.11ENST00000256383hsa-miR-193b-3p67385376673853827mer-m86738536467385383152-20.35
CAediting_998882chr14_67385381_+ENSG00000134001.11ENST00000256383hsa-miR-317667385375673853817mer-m86738536467385382140-17.57
CAediting_998883chr14_67385430_+ENSG00000134001.11ENST00000256383hsa-miR-431-5p67385424673854307mer-m86738541367385431147-19.33
CAediting_998882chr14_67385381_+ENSG00000134001.11ENST00000256383hsa-miR-653-3p67385378673853847mer-m86738536167385385141-16.81
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-6839-5p67384746673847538mer-1a6738473267384753150-16.67
CAediting_998882chr14_67385381_+ENSG00000134001.11ENST00000256383hsa-miR-6878-3p67385374673853807mer-m86738535967385381154-27.54
CAediting_998876chr14_67384746_+ENSG00000134001.11ENST00000256383hsa-miR-876-5p67384744673847518mer-1a6738473067384751140-10.4
CAediting_998877chr14_67384748_+ENSG00000134001.11ENST00000256383hsa-miR-876-5p67384744673847518mer-1a6738473067384751140-10.4

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_748296chr10_51299626_+ENSG00000134001.11ENST00000256383hsa-miR-605-3p67383593673835997mer-m86738357967383600151-16.09
CAediting_980496chr14_31014685_-ENSG00000134001.11ENST00000256383hsa-miR-624-3p67385429673854357mer-m86738541467385436154-20.19
CAediting_748296chr10_51299626_+ENSG00000134001.11ENST00000466499hsa-miR-605-3p67383593673835997mer-m86738357967383600151-16.09
CAediting_1229413chr17_67471544_+ENSG00000134001.11ENST00000256383hsa-miR-548aa67384773673847797mer-m86738475367384780145-13.96
CAediting_117844chr1_162342605_+ENSG00000134001.11ENST00000256383hsa-miR-556-3p67386453673864597mer-m86738643967386460148-12.22

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_393chr1_1167164_+ENSG00000134001.11ENST00000256383hsa-miR-200b-3p67385130673851367mer-m86738511567385137141-12.01
CAediting_393chr1_1167164_+ENSG00000134001.11ENST00000256383hsa-miR-200b-3p67383518673835247mer-m86738350467383525140-9.74
CAediting_393chr1_1167164_+ENSG00000134001.11ENST00000466499hsa-miR-200b-3p67383518673835247mer-m86738350467383525140-9.74

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for EIF2S1

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for EIF2S1

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
LGGCAediting_998878chr14_67385323_+1.62238279102112e-060.501153717343991....
BRCACAediting_998878chr14_67385323_+1.48271420173539e-110.345444324307803....
LIHCCAediting_998878chr14_67385323_+0.005564880712876290.325775678673011....
LUADCAediting_998878chr14_67385323_+0.008366625241031420.254895929643346....
LUSCCAediting_998878chr14_67385323_+0.000594641856674240.360897784793787....
THCACAediting_998878chr14_67385323_+0.03798078548051190.256039928074115....
BRCACAediting_998880chr14_67385350_+2.8672372851826e-060.320184384285504....
LIHCCAediting_998880chr14_67385350_+0.009586300246942430.29731121315728....
LUADCAediting_998880chr14_67385350_+0.005076938228154580.336091777405395....

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Relation with cancer stages for EIF2S1

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BRCApathologic_stageCAediting_998878chr14_67385323_+0.04082924294956930.108920459995412
UCECclinical_stageCAediting_998878chr14_67385323_+0.03855239308876110.244392609561216

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Relation with survival for EIF2S1

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for EIF2S1

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for EIF2S1

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
EIF2S1C0002395Alzheimer's Disease1CTD_human
EIF2S1C0009241Cognition Disorders1CTD_human
EIF2S1C0011265Presenile dementia1CTD_human
EIF2S1C0027746Nerve Degeneration1CTD_human
EIF2S1C0029463Osteosarcoma1CTD_human
EIF2S1C0036341Schizophrenia1PSYGENET
EIF2S1C0038220Status Epilepticus1CTD_human
EIF2S1C0270823Petit mal status1CTD_human
EIF2S1C0276496Familial Alzheimer Disease (FAD)1CTD_human
EIF2S1C0311335Grand Mal Status Epilepticus1CTD_human
EIF2S1C0393734Complex Partial Status Epilepticus1CTD_human
EIF2S1C0494463Alzheimer Disease, Late Onset1CTD_human
EIF2S1C0546126Acute Confusional Senile Dementia1CTD_human
EIF2S1C0750900Alzheimer's Disease, Focal Onset1CTD_human
EIF2S1C0750901Alzheimer Disease, Early Onset1CTD_human
EIF2S1C0751522Status Epilepticus, Subclinical1CTD_human
EIF2S1C0751523Non-Convulsive Status Epilepticus1CTD_human
EIF2S1C0751524Simple Partial Status Epilepticus1CTD_human