CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact
Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: EEF1D (CAeditome ID:1936)

Gene summary for EEF1D

check button Gene summary
Gene informationGene symbol

EEF1D

Gene ID

1936

Gene nameeukaryotic translation elongation factor 1 delta
SynonymsEF-1D|EF1D|FP1047
Cytomap

8q24.3

Type of geneprotein-coding
Descriptionelongation factor 1-deltaEF-1-deltaantigen NY-CO-4eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)
Modification date20210518
UniProtAcc

P29692

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
EEF1D

GO:0005783

Elongation factor 1-delta

8743958

EEF1D

GO:0071479

Elongation factor 1-delta

8168075

EEF1D

GO:0001650

Elongation factor 1-delta

0000052

EEF1D

GO:0005654

Elongation factor 1-delta

0000052

EEF1D

GO:0005737

Elongation factor 1-delta

8743958

EEF1D

GO:0005829

Elongation factor 1-delta

0000052


Top

RNA A-to-I events for EEF1D

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000104529.16
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_670044(143584541, -), CAediting_670045(143587422, -), CAediting_670046(143587426, -), CAediting_670047(143587437, -), CAediting_670048(143587441, -), CAediting_670049(143587445, -), CAediting_670050(143587462, -), CAediting_670051(143587468, -), CAediting_670052(143587490, -), CAediting_670053(143587494, -), CAediting_670054(143587497, -), CAediting_670055(143587498, -), CAediting_670056(143587499, -), CAediting_670057(143587522, -), CAediting_670058(143587532, -), CAediting_670059(143587533, -), CAediting_670060(143587547, -), CAediting_670061(143587559, -), CAediting_670062(143587593, -), CAediting_670063(143587596, -), CAediting_670064(143587601, -), CAediting_670065(143587602, -), CAediting_670066(143590646, -), CAediting_670067(143590648, -), CAediting_670068(143590660, -), CAediting_670069(143590661, -), CAediting_670070(143590662, -), CAediting_670071(143590683, -), CAediting_670072(143590691, -), CAediting_670073(143590693, -), CAediting_670074(143590708, -), CAediting_670075(143590711, -), CAediting_670076(143590715, -), CAediting_670077(143590722, -), CAediting_670078(143590723, -), CAediting_670079(143590731, -), CAediting_670080(143590735, -), CAediting_670081(143590737, -), CAediting_670082(143590740, -), CAediting_670083(143590746, -), CAediting_670084(143590752, -), CAediting_670085(143590758, -), CAediting_670086(143590783, -), CAediting_670087(143590785, -), CAediting_670088(143590795, -), CAediting_670089(143590807, -), CAediting_670090(143590820, -), CAediting_670091(143590844, -), CAediting_670092(143591071, -), CAediting_670093(143594390, -), CAediting_670094(143594971, -), CAediting_670095(143594973, -), CAediting_670096(143594978, -), CAediting_670097(143594982, -), CAediting_670098(143595002, -), CAediting_670099(143595012, -), CAediting_670100(143595021, -), CAediting_670101(143595034, -), CAediting_670102(143595044, -), CAediting_670103(143595070, -), CAediting_670104(143595130, -), CAediting_670105(143595135, -), CAediting_670106(143595137, -), CAediting_670107(143595152, -), CAediting_670108(143595166, -), CAediting_670109(143595175, -), CAediting_670110(143595185, -), CAediting_670111(143595198, -), CAediting_670112(143595202, -), CAediting_670113(143595207, -), CAediting_670114(143595208, -), CAediting_670115(143595230, -), CAediting_670116(143595234, -), CAediting_670117(143595264, -), CAediting_670118(143595274, -), CAediting_670119(143595275, -), CAediting_670120(143595313, -), CAediting_670121(143595322, -), CAediting_670122(143595343, -), CAediting_670123(143595344, -), CAediting_670124(143595370, -), CAediting_670125(143595373, -), CAediting_670126(143595374, -), CAediting_670127(143595400, -), CAediting_670128(143595401, -), CAediting_670129(143595409, -), CAediting_670130(143595410, -), CAediting_670131(143595438, -), CAediting_670132(143595446, -), CAediting_670133(143595450, -), CAediting_670134(143595471, -), CAediting_670135(143595485, -),

Top

RNA editing positional annotations for EEF1D using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_670044chr8_143584541_-ncRNA_intronic
CAediting_670045chr8_143587422_-ncRNA_intronic
CAediting_670046chr8_143587426_-ncRNA_intronic
CAediting_670047chr8_143587437_-ncRNA_intronic
CAediting_670048chr8_143587441_-ncRNA_intronic
CAediting_670049chr8_143587445_-ncRNA_intronic
CAediting_670050chr8_143587462_-ncRNA_intronic
CAediting_670051chr8_143587468_-ncRNA_intronic
CAediting_670052chr8_143587490_-ncRNA_intronic
CAediting_670053chr8_143587494_-ncRNA_intronic
CAediting_670054chr8_143587497_-ncRNA_intronic
CAediting_670055chr8_143587498_-ncRNA_intronic
CAediting_670056chr8_143587499_-ncRNA_intronic
CAediting_670057chr8_143587522_-ncRNA_intronic
CAediting_670058chr8_143587532_-ncRNA_intronic
CAediting_670059chr8_143587533_-ncRNA_intronic
CAediting_670060chr8_143587547_-ncRNA_intronic
CAediting_670061chr8_143587559_-ncRNA_intronic
CAediting_670062chr8_143587593_-ncRNA_intronic
CAediting_670063chr8_143587596_-ncRNA_intronic
CAediting_670064chr8_143587601_-ncRNA_intronic
CAediting_670065chr8_143587602_-ncRNA_intronic
CAediting_670066chr8_143590646_-ncRNA_intronic
CAediting_670067chr8_143590648_-ncRNA_intronic
CAediting_670068chr8_143590660_-ncRNA_intronic
CAediting_670069chr8_143590661_-ncRNA_intronic
CAediting_670070chr8_143590662_-ncRNA_intronic
CAediting_670071chr8_143590683_-ncRNA_intronic
CAediting_670072chr8_143590691_-ncRNA_intronic
CAediting_670073chr8_143590693_-ncRNA_intronic
CAediting_670074chr8_143590708_-ncRNA_intronic
CAediting_670075chr8_143590711_-ncRNA_intronic
CAediting_670076chr8_143590715_-ncRNA_intronic
CAediting_670077chr8_143590722_-ncRNA_intronic
CAediting_670078chr8_143590723_-ncRNA_intronic
CAediting_670079chr8_143590731_-splicing
CAediting_670080chr8_143590735_-ncRNA_intronic
CAediting_670081chr8_143590737_-splicing
CAediting_670082chr8_143590740_-splicing
CAediting_670083chr8_143590746_-ncRNA_intronic
CAediting_670084chr8_143590752_-ncRNA_intronic
CAediting_670085chr8_143590758_-ncRNA_intronic
CAediting_670086chr8_143590783_-ncRNA_intronic
CAediting_670087chr8_143590785_-ncRNA_intronic
CAediting_670088chr8_143590795_-ncRNA_intronic
CAediting_670089chr8_143590807_-ncRNA_intronic
CAediting_670090chr8_143590820_-ncRNA_intronic
CAediting_670091chr8_143590844_-ncRNA_intronic
CAediting_670092chr8_143591071_-ncRNA_intronic
CAediting_670093chr8_143594390_-ncRNA_intronic
CAediting_670094chr8_143594971_-ncRNA_intronic
CAediting_670095chr8_143594973_-ncRNA_intronic
CAediting_670096chr8_143594978_-ncRNA_intronic
CAediting_670097chr8_143594982_-ncRNA_intronic
CAediting_670098chr8_143595002_-ncRNA_intronic
CAediting_670099chr8_143595012_-ncRNA_intronic
CAediting_670100chr8_143595021_-ncRNA_intronic
CAediting_670101chr8_143595034_-ncRNA_intronic
CAediting_670102chr8_143595044_-ncRNA_intronic
CAediting_670103chr8_143595070_-ncRNA_intronic
CAediting_670104chr8_143595130_-ncRNA_intronic
CAediting_670105chr8_143595135_-ncRNA_intronic
CAediting_670106chr8_143595137_-ncRNA_intronic
CAediting_670107chr8_143595152_-ncRNA_intronic
CAediting_670108chr8_143595166_-ncRNA_intronic
CAediting_670109chr8_143595175_-ncRNA_intronic
CAediting_670110chr8_143595185_-ncRNA_intronic
CAediting_670111chr8_143595198_-ncRNA_intronic
CAediting_670112chr8_143595202_-ncRNA_intronic
CAediting_670113chr8_143595207_-ncRNA_intronic
CAediting_670114chr8_143595208_-ncRNA_intronic
CAediting_670115chr8_143595230_-ncRNA_intronic
CAediting_670116chr8_143595234_-ncRNA_intronic
CAediting_670117chr8_143595264_-ncRNA_intronic
CAediting_670118chr8_143595274_-ncRNA_intronic
CAediting_670119chr8_143595275_-ncRNA_intronic
CAediting_670120chr8_143595313_-ncRNA_intronic
CAediting_670121chr8_143595322_-ncRNA_intronic
CAediting_670122chr8_143595343_-ncRNA_intronic
CAediting_670123chr8_143595344_-ncRNA_intronic
CAediting_670124chr8_143595370_-ncRNA_intronic
CAediting_670125chr8_143595373_-ncRNA_intronic
CAediting_670126chr8_143595374_-ncRNA_intronic
CAediting_670127chr8_143595400_-ncRNA_intronic
CAediting_670128chr8_143595401_-ncRNA_intronic
CAediting_670129chr8_143595409_-ncRNA_intronic
CAediting_670130chr8_143595410_-ncRNA_intronic
CAediting_670131chr8_143595438_-ncRNA_intronic
CAediting_670132chr8_143595446_-ncRNA_intronic
CAediting_670133chr8_143595450_-ncRNA_intronic
CAediting_670134chr8_143595471_-ncRNA_intronic
CAediting_670135chr8_143595485_-ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_670044chr8_143584541_-SINEAluAluSx3
CAediting_670045chr8_143587422_-SINEAluAluSx3
CAediting_670046chr8_143587426_-SINEAluAluSx3
CAediting_670047chr8_143587437_-SINEAluAluSx3
CAediting_670048chr8_143587441_-SINEAluAluSx3
CAediting_670049chr8_143587445_-SINEAluAluSx3
CAediting_670050chr8_143587462_-SINEAluAluSx3
CAediting_670051chr8_143587468_-SINEAluAluSx3
CAediting_670052chr8_143587490_-SINEAluAluSx3
CAediting_670053chr8_143587494_-SINEAluAluSx3
CAediting_670054chr8_143587497_-SINEAluAluSx3
CAediting_670055chr8_143587498_-SINEAluAluSx3
CAediting_670056chr8_143587499_-SINEAluAluSx3
CAediting_670057chr8_143587522_-SINEAluAluSx3
CAediting_670058chr8_143587532_-SINEAluAluSx3
CAediting_670059chr8_143587533_-SINEAluAluSx3
CAediting_670060chr8_143587547_-SINEAluAluSx3
CAediting_670061chr8_143587559_-SINEAluAluSx3
CAediting_670062chr8_143587593_-SINEAluAluSx3
CAediting_670063chr8_143587596_-SINEAluAluSx3
CAediting_670064chr8_143587601_-SINEAluAluSx3
CAediting_670065chr8_143587602_-SINEAluAluSx3
CAediting_670066chr8_143590646_-SINEAluAluY
CAediting_670067chr8_143590648_-SINEAluAluY
CAediting_670068chr8_143590660_-SINEAluAluY
CAediting_670069chr8_143590661_-SINEAluAluY
CAediting_670070chr8_143590662_-SINEAluAluY
CAediting_670071chr8_143590683_-SINEAluAluY
CAediting_670072chr8_143590691_-SINEAluAluY
CAediting_670073chr8_143590693_-SINEAluAluY
CAediting_670074chr8_143590708_-SINEAluAluY
CAediting_670075chr8_143590711_-SINEAluAluY
CAediting_670076chr8_143590715_-SINEAluAluY
CAediting_670077chr8_143590722_-SINEAluAluY
CAediting_670078chr8_143590723_-SINEAluAluY
CAediting_670079chr8_143590731_-SINEAluAluY
CAediting_670080chr8_143590735_-SINEAluAluY
CAediting_670081chr8_143590737_-SINEAluAluY
CAediting_670082chr8_143590740_-SINEAluAluY
CAediting_670083chr8_143590746_-SINEAluAluY
CAediting_670084chr8_143590752_-SINEAluAluY
CAediting_670085chr8_143590758_-SINEAluAluY
CAediting_670086chr8_143590783_-SINEAluAluY
CAediting_670087chr8_143590785_-SINEAluAluY
CAediting_670088chr8_143590795_-SINEAluAluY
CAediting_670089chr8_143590807_-SINEAluAluY
CAediting_670090chr8_143590820_-SINEAluAluY
CAediting_670091chr8_143590844_-SINEAluAluY
CAediting_670094chr8_143594971_-SINEAluAluSc5
CAediting_670095chr8_143594973_-SINEAluAluSc5
CAediting_670096chr8_143594978_-SINEAluAluSc5
CAediting_670097chr8_143594982_-SINEAluAluSc5
CAediting_670098chr8_143595002_-SINEAluAluSc5
CAediting_670099chr8_143595012_-SINEAluAluSc5
CAediting_670100chr8_143595021_-SINEAluAluSc5
CAediting_670101chr8_143595034_-SINEAluAluSc5
CAediting_670102chr8_143595044_-SINEAluAluSc5
CAediting_670103chr8_143595070_-SINEAluAluSc5
CAediting_670104chr8_143595130_-SINEAluAluSx
CAediting_670105chr8_143595135_-SINEAluAluSx
CAediting_670106chr8_143595137_-SINEAluAluSx
CAediting_670107chr8_143595152_-SINEAluAluSx
CAediting_670108chr8_143595166_-SINEAluAluSx
CAediting_670109chr8_143595175_-SINEAluAluSx
CAediting_670110chr8_143595185_-SINEAluAluSx
CAediting_670111chr8_143595198_-SINEAluAluSx
CAediting_670112chr8_143595202_-SINEAluAluSx
CAediting_670113chr8_143595207_-SINEAluAluSx
CAediting_670114chr8_143595208_-SINEAluAluSx
CAediting_670115chr8_143595230_-SINEAluAluSx
CAediting_670116chr8_143595234_-SINEAluAluSx
CAediting_670117chr8_143595264_-SINEAluAluSx
CAediting_670118chr8_143595274_-SINEAluAluSx
CAediting_670119chr8_143595275_-SINEAluAluSx
CAediting_670120chr8_143595313_-SINEAluAluSx
CAediting_670121chr8_143595322_-SINEAluAluSx
CAediting_670122chr8_143595343_-SINEAluAluSx
CAediting_670123chr8_143595344_-SINEAluAluSx
CAediting_670124chr8_143595370_-SINEAluAluSc5
CAediting_670125chr8_143595373_-SINEAluAluSc5
CAediting_670126chr8_143595374_-SINEAluAluSc5
CAediting_670127chr8_143595400_-SINEAluAluSc5
CAediting_670128chr8_143595401_-SINEAluAluSc5
CAediting_670129chr8_143595409_-SINEAluAluSc5
CAediting_670130chr8_143595410_-SINEAluAluSc5
CAediting_670131chr8_143595438_-SINEAluAluSc5
CAediting_670132chr8_143595446_-SINEAluAluSc5
CAediting_670133chr8_143595450_-SINEAluAluSc5
CAediting_670134chr8_143595471_-SINEAluAluSc5
CAediting_670135chr8_143595485_-SINEAluAluSc5

Top

RNA A-to-I editing events in the alternative splicing sites for EEF1D

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_670066chr8_143590646_-143590638:1435906465SS3+0iAGGTGTGAG-23.3GGGTGTGAG-27.16
IRCAediting_670066chr8_143590646_-143590638:1435906465SS3+0iAGGTGTGAG-23.3GGGTGTGAG-27.16
MEX_1CAediting_670066chr8_143590646_-143590638:1435906465SS3+0iAGGTGTGAG-23.3GGGTGTGAG-27.16
MEX_1CAediting_670079chr8_143590731_-143590727:1435907493SS0+2iTTTATTTTTAGTAGAGACAGGGT-12.73TTTATTTTTAGTAGAGACGGGGT-20.69
ESCAediting_670080chr8_143590735_-143590733:1435907553SS1+0iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTATTTTTAGTAGGGA4.73
MEX_1CAediting_670080chr8_143590735_-143590727:1435907493SS0+6iTTTATTTTTAGTAGAGACAGGGT-12.73TTTATTTTTAGTAGGGACAGGGT-8.82
MEX_1CAediting_670080chr8_143590735_-143590733:1435907553SS1+0iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTATTTTTAGTAGGGA4.73
ESCAediting_670081chr8_143590737_-143590736:1435907583SS2+0iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTATTTTTATTTTTAGTGG8.14
ESCAediting_670081chr8_143590737_-143590733:1435907553SS0+2iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTATTTTTAGTGGAGA-4.51
MEX_1CAediting_670081chr8_143590737_-143590736:1435907583SS2+0iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTATTTTTATTTTTAGTGG8.14
MEX_1CAediting_670081chr8_143590737_-143590727:1435907493SS0+8iTTTATTTTTAGTAGAGACAGGGT-12.73TTTATTTTTAGTGGAGACAGGGT-7.18
MEX_1CAediting_670081chr8_143590737_-143590733:1435907553SS0+2iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTATTTTTAGTGGAGA-4.51
ESCAediting_670082chr8_143590740_-143590736:1435907583SS0+2iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTATTTTTATTTTTGGTAG-1.14
ESCAediting_670082chr8_143590740_-143590733:1435907553SS0+5iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTATTTTTGGTAGAGA4.86
MEX_1CAediting_670082chr8_143590740_-143590736:1435907583SS0+2iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTATTTTTATTTTTGGTAG-1.14
MEX_1CAediting_670082chr8_143590740_-143590727:1435907493SS0+11iTTTATTTTTAGTAGAGACAGGGT-12.73TTTATTTTTGGTAGAGACAGGGT-6.75
MEX_1CAediting_670082chr8_143590740_-143590733:1435907553SS0+5iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTATTTTTGGTAGAGA4.86
ESCAediting_670083chr8_143590746_-143590736:1435907583SS0+8iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTATTTTTGTTTTTAGTAG7.12
ESCAediting_670083chr8_143590746_-143590733:1435907553SS0+11iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTGTTTTTAGTAGAGA4.89
MEX_1CAediting_670083chr8_143590746_-143590736:1435907583SS0+8iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTATTTTTGTTTTTAGTAG7.12
MEX_1CAediting_670083chr8_143590746_-143590727:1435907493SS0+17iTTTATTTTTAGTAGAGACAGGGT-12.73TTTGTTTTTAGTAGAGACAGGGT-12.54
MEX_1CAediting_670083chr8_143590746_-143590733:1435907553SS0+11iTTTATTTTTATTTTTAGTAGAGA3.45TTTATTTTTGTTTTTAGTAGAGA4.89
ESCAediting_670084chr8_143590752_-143590736:1435907583SS0+14iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTGTTTTTATTTTTAGTAG7.22
ESCAediting_670084chr8_143590752_-143590733:1435907553SS0+17iTTTATTTTTATTTTTAGTAGAGA3.45TTTGTTTTTATTTTTAGTAGAGA3.64
MEX_1CAediting_670084chr8_143590752_-143590736:1435907583SS0+14iATTTTTATTTTTATTTTTAGTAG6.81ATTTTTGTTTTTATTTTTAGTAG7.22
MEX_1CAediting_670084chr8_143590752_-143590733:1435907553SS0+17iTTTATTTTTATTTTTAGTAGAGA3.45TTTGTTTTTATTTTTAGTAGAGA3.64
ESCAediting_670085chr8_143590758_-143590736:1435907583SS0+20iATTTTTATTTTTATTTTTAGTAG6.81GTTTTTATTTTTATTTTTAGTAG6.82
MEX_1CAediting_670085chr8_143590758_-143590736:1435907583SS0+20iATTTTTATTTTTATTTTTAGTAG6.81GTTTTTATTTTTATTTTTAGTAG6.82

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000104529.16.EEF1D.
boxplot

check button Correlation between RNA A-to-I editing and PSI for ENSG00000104529.16.EEF1D.
boxplot

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for EEF1D

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
KICH.CAediting_670079.ENSG00000104529.EEF1D.png
Soverview
KIRC.CAediting_670076.ENSG00000104529.EEF1D.png
Soverview
KIRC.CAediting_670079.ENSG00000104529.EEF1D.png
Soverview
LGG.CAediting_670076.ENSG00000104529.EEF1D.png
Soverview
LIHC.CAediting_670076.ENSG00000104529.EEF1D.png
Soverview

Top

Protein coding region RNA A-to-I editings for EEF1D

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for EEF1D

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_414656chr5_72878640_+ENSG00000104529.16ENST00000533833hsa-miR-4804-3p1435805081435805147mer-m8143580507143580527143-12.73
CAediting_414656chr5_72878640_+ENSG00000104529.16ENST00000529007hsa-miR-4804-3p1435805081435805147mer-m8143580507143580527143-12.73
CAediting_414656chr5_72878640_+ENSG00000104529.16ENST00000524397hsa-miR-4804-3p1435805081435805147mer-m8143580507143580527143-12.73

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for EEF1D

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for EEF1D

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BLCACAediting_670076chr8_143590715_-0.0474506337960090.1190012016856160.001735934316225950.18702994782222..
LUADCAediting_670076chr8_143590715_-0.01463390793614080.132693860468562....
STADCAediting_670076chr8_143590715_-..0.001852531726249670.173645182496114..
THCACAediting_670076chr8_143590715_-0.005230491106985260.129860402270803....
TGCTCAediting_670076chr8_143590715_-..3.16637337474243e-050.352494385133565..
BRCACAediting_670079chr8_143590731_-..0.04311015702976910.0777049695332061..
LUADCAediting_670079chr8_143590731_-0.0332184876697520.126856595960169....
STADCAediting_670079chr8_143590731_-..0.007629878803767030.155847628302857..
THCACAediting_670079chr8_143590731_-0.01265381203787080.126318442799626....
TGCTCAediting_670079chr8_143590731_-..0.0001437328926244380.407687419103483..
BRCACAediting_670122chr8_143595343_-..0.007320517526167910.357788904921529..

Top

Relation with cancer stages for EEF1D

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.
BLCApathologic_stageCAediting_670076chr8_143590715_-0.001538109747574150.189780511394208
BRCApathologic_stageCAediting_670087chr8_143590785_-0.0432175830435503-0.178996077566586
HNSCpathologic_stageCAediting_670076chr8_143590715_-0.02767984641313560.127561138104407
KIRPclinical_stageCAediting_670076chr8_143590715_-0.03298522605070350.201667384438199
KIRPpathologic_stageCAediting_670076chr8_143590715_-0.02013295818000280.188354504349931
TGCTpathologic_stageCAediting_670076chr8_143590715_-0.00268036723625290.356005084295112
THCApathologic_stageCAediting_670076chr8_143590715_-0.001172827045269820.151517645690124
UVMclinical_stageCAediting_670079chr8_143590731_-0.0324202699708342-0.259759850411055

Top

Relation with survival for EEF1D

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR
LGGCAediting_670076chr8_143590715_-1.21986365930749e-050.0002219950.0656601
LGGCAediting_670079chr8_143590731_-0.004099934892442310.02017610.156259
BRCACAediting_670122chr8_143595343_-0.02649031353929170.01789886572920000

Top

RelatedDrugs for EEF1D

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for EEF1D

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource