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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: SYNPO2 (CAeditome ID:171024)

Gene summary for SYNPO2

check button Gene summary
Gene informationGene symbol

SYNPO2

Gene ID

171024

Gene namesynaptopodin 2
Synonyms-
Cytomap

4q26

Type of geneprotein-coding
Descriptionsynaptopodin-2genethonin-2myopodin
Modification date20210518
UniProtAcc

Q9UMS6

Context- 28231729(Association of a common variant of SYNPO2 gene with increased risk of serous epithelial ovarian cancer)

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
SYNPO2

GO:0031005

Synaptopodin-2

20554076

SYNPO2

GO:0051393

Synaptopodin-2

20554076

SYNPO2

GO:0001725

Synaptopodin-2

20554076

SYNPO2

GO:0001725

Synaptopodin-2

23434281

SYNPO2

GO:0005654

Synaptopodin-2

0000052

SYNPO2

GO:0005829

Synaptopodin-2

0000052

SYNPO2

GO:0005925

Synaptopodin-2

20554076

SYNPO2

GO:0015629

Synaptopodin-2

0000052

SYNPO2

GO:0015629

Synaptopodin-2

0000054

SYNPO2

GO:0030018

Synaptopodin-2

20554076

SYNPO2

GO:0043231

Synaptopodin-2

0000052


Top

RNA A-to-I events for SYNPO2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000172403.9
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_381605(118851312, +), CAediting_381606(118851323, +), CAediting_381607(118851332, +), CAediting_381608(118851367, +), CAediting_381609(118873250, +), CAediting_381610(118880702, +), CAediting_381611(118916802, +), CAediting_381612(118916862, +), CAediting_381613(118916898, +), CAediting_381614(118916970, +), CAediting_381615(118916987, +), CAediting_381616(118917182, +), CAediting_381617(118917239, +), CAediting_381618(118917242, +), CAediting_381619(118917243, +), CAediting_381620(118917297, +), CAediting_381621(118917341, +), CAediting_381622(118930700, +), CAediting_381623(118955099, +), CAediting_381624(118955118, +), CAediting_381625(118955142, +), CAediting_381626(118956922, +), CAediting_381627(118956965, +), CAediting_381628(118963588, +), CAediting_381629(118964159, +), CAediting_381630(118988748, +), CAediting_381631(118988754, +), CAediting_381632(118988818, +), CAediting_381633(118988819, +), CAediting_381634(118989115, +), CAediting_381635(118989122, +), CAediting_381636(118991035, +), CAediting_381637(118991041, +), CAediting_381638(118991055, +), CAediting_381639(118991514, +), CAediting_381640(118991650, +), CAediting_381641(118991658, +), CAediting_381642(118991710, +), CAediting_381643(118999228, +), CAediting_381644(119029873, +), CAediting_381645(119030061, +), CAediting_381646(119030069, +), CAediting_381647(119031262, +), CAediting_381648(119031758, +), CAediting_381649(119032765, +), CAediting_381650(119032791, +), CAediting_381651(119032821, +), CAediting_381652(119043106, +), CAediting_381653(119043131, +), CAediting_381654(119043144, +), CAediting_381655(119043674, +), CAediting_381656(119043682, +), CAediting_381657(119043683, +), CAediting_381658(119043728, +), CAediting_381659(119043736, +), CAediting_381660(119043737, +), CAediting_381661(119043742, +), CAediting_381662(119043762, +), CAediting_381663(119043767, +), CAediting_381664(119043777, +), CAediting_381665(119043778, +), CAediting_381666(119043780, +), CAediting_381667(119043782, +), CAediting_381668(119043791, +), CAediting_381669(119043818, +), CAediting_381670(119043844, +), CAediting_381671(119043850, +), CAediting_381672(119043853, +), CAediting_381673(119043858, +), CAediting_381674(119043859, +), CAediting_381675(119043870, +), CAediting_381676(119043879, +), CAediting_381677(119043883, +), CAediting_381678(119043895, +), CAediting_381679(119043903, +), CAediting_381680(119043908, +), CAediting_381681(119043922, +), CAediting_381682(119044550, +), CAediting_381683(119044562, +), CAediting_381684(119044574, +), CAediting_381685(119044605, +), CAediting_381686(119044610, +), CAediting_381687(119044611, +), CAediting_381688(119044617, +), CAediting_381689(119044625, +), CAediting_381690(119045345, +), CAediting_381691(119045360, +), CAediting_381692(119045371, +), CAediting_381693(119045384, +), CAediting_381694(119045385, +), CAediting_381695(119045405, +), CAediting_381696(119045408, +), CAediting_381697(119047079, +), CAediting_381698(119047091, +), CAediting_381699(119047109, +), CAediting_381700(119047117, +), CAediting_381701(119047122, +), CAediting_381702(119047124, +), CAediting_381703(119047125, +), CAediting_381704(119047130, +), CAediting_381705(119047140, +), CAediting_381706(119047141, +), CAediting_381707(119047161, +), CAediting_381708(119047165, +), CAediting_381709(119047178, +), CAediting_381710(119047186, +), CAediting_381711(119047187, +), CAediting_381712(119047200, +), CAediting_381713(119047202, +), CAediting_381714(119047206, +), CAediting_381715(119047209, +), CAediting_381716(119047226, +), CAediting_381717(119047234, +), CAediting_381718(119047240, +), CAediting_381719(119047243, +), CAediting_381720(119047249, +), CAediting_381721(119047269, +), CAediting_381722(119047275, +), CAediting_381723(119047278, +), CAediting_381724(119047281, +), CAediting_381725(119047282, +), CAediting_381726(119047289, +), CAediting_381727(119047294, +), CAediting_381728(119047319, +), CAediting_381729(119047320, +), CAediting_381730(119047321, +), CAediting_381731(119047333, +), CAediting_381732(119047341, +), CAediting_381733(119047342, +), CAediting_381734(119050060, +), CAediting_381735(119050070, +), CAediting_381736(119050082, +), CAediting_381737(119050107, +), CAediting_381738(119050130, +), CAediting_381739(119050146, +), CAediting_381740(119050153, +), CAediting_381741(119050154, +), CAediting_381742(119050161, +), CAediting_381743(119050167, +), CAediting_381744(119050221, +), CAediting_381745(119050225, +), CAediting_381746(119050244, +), CAediting_381747(119050247, +), CAediting_381748(119050264, +), CAediting_381749(119050273, +), CAediting_381750(119050281, +), CAediting_381751(119050292, +), CAediting_381752(119050303, +), CAediting_381753(119054498, +), CAediting_381754(119055191, +), CAediting_381755(119055221, +), CAediting_381756(119055229, +), CAediting_381757(119055231, +), CAediting_381758(119055232, +), CAediting_381759(119055251, +), CAediting_381760(119055252, +), CAediting_381761(119055256, +), CAediting_381762(119055278, +), CAediting_381763(119055281, +), CAediting_381764(119055291, +), CAediting_381765(119055335, +), CAediting_381766(119055338, +), CAediting_381767(119055364, +), CAediting_381768(119055376, +), CAediting_381769(119055384, +), CAediting_381770(119055389, +), CAediting_381771(119055390, +), CAediting_381772(119055407, +), CAediting_381773(119055417, +), CAediting_381774(119055429, +), CAediting_381775(119056275, +), CAediting_381776(119056298, +), CAediting_381777(119056430, +), CAediting_381778(119056436, +), CAediting_381779(119056477, +), CAediting_381780(119056485, +), CAediting_381781(119056498, +), CAediting_381782(119056506, +), CAediting_381783(119056541, +), CAediting_381784(119058525, +), CAediting_381785(119058531, +), CAediting_381786(119058549, +), CAediting_381787(119058575, +), CAediting_381788(119058614, +), CAediting_381789(119058624, +), CAediting_381790(119058627, +), CAediting_381791(119058655, +), CAediting_381792(119058735, +), CAediting_381793(119058756, +), CAediting_381794(119058760, +),

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RNA editing positional annotations for SYNPO2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_381648chr4_119031758_+nonsynonymous SNVENST00000307142.7c.A2983Gp.K995EDPN
CAediting_381648chr4_119031758_+nonsynonymous SNVENST00000429713.5c.A2983Gp.K995EDPN
CAediting_381648chr4_119031758_+nonsynonymous SNVENST00000434046.5c.A2983Gp.K995EDPN
CAediting_381648chr4_119031758_+nonsynonymous SNVENST00000610556.3c.A2890Gp.K964EDPN

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_381605chr4_118851312_+intronic
CAediting_381606chr4_118851323_+intronic
CAediting_381607chr4_118851332_+intronic
CAediting_381608chr4_118851367_+intronic
CAediting_381609chr4_118873250_+intronic
CAediting_381610chr4_118880702_+intronic
CAediting_381611chr4_118916802_+intronic
CAediting_381612chr4_118916862_+intronic
CAediting_381613chr4_118916898_+intronic
CAediting_381614chr4_118916970_+intronic
CAediting_381615chr4_118916987_+intronic
CAediting_381616chr4_118917182_+intronic
CAediting_381617chr4_118917239_+intronic
CAediting_381618chr4_118917242_+intronic
CAediting_381619chr4_118917243_+intronic
CAediting_381620chr4_118917297_+intronic
CAediting_381621chr4_118917341_+intronic
CAediting_381622chr4_118930700_+intronic
CAediting_381623chr4_118955099_+intronic
CAediting_381624chr4_118955118_+intronic
CAediting_381625chr4_118955142_+intronic
CAediting_381626chr4_118956922_+intronic
CAediting_381627chr4_118956965_+intronic
CAediting_381628chr4_118963588_+intronic
CAediting_381629chr4_118964159_+intronic
CAediting_381630chr4_118988748_+intronic
CAediting_381631chr4_118988754_+intronic
CAediting_381632chr4_118988818_+intronic
CAediting_381633chr4_118988819_+intronic
CAediting_381634chr4_118989115_+intronic
CAediting_381635chr4_118989122_+intronic
CAediting_381636chr4_118991035_+intronic
CAediting_381637chr4_118991041_+intronic
CAediting_381638chr4_118991055_+intronic
CAediting_381639chr4_118991514_+intronic
CAediting_381640chr4_118991650_+intronic
CAediting_381641chr4_118991658_+intronic
CAediting_381642chr4_118991710_+intronic
CAediting_381643chr4_118999228_+intronic
CAediting_381644chr4_119029873_+exonic
CAediting_381645chr4_119030061_+exonic
CAediting_381646chr4_119030069_+exonic
CAediting_381647chr4_119031262_+exonic
CAediting_381648chr4_119031758_+exonic
CAediting_381649chr4_119032765_+UTR3
CAediting_381650chr4_119032791_+UTR3
CAediting_381651chr4_119032821_+UTR3
CAediting_381652chr4_119043106_+ncRNA_exonic
CAediting_381653chr4_119043131_+ncRNA_exonic
CAediting_381654chr4_119043144_+ncRNA_exonic
CAediting_381655chr4_119043674_+ncRNA_exonic
CAediting_381656chr4_119043682_+ncRNA_exonic
CAediting_381657chr4_119043683_+ncRNA_exonic
CAediting_381658chr4_119043728_+ncRNA_exonic
CAediting_381659chr4_119043736_+ncRNA_exonic
CAediting_381660chr4_119043737_+ncRNA_exonic
CAediting_381661chr4_119043742_+ncRNA_exonic
CAediting_381662chr4_119043762_+ncRNA_exonic
CAediting_381663chr4_119043767_+ncRNA_exonic
CAediting_381664chr4_119043777_+ncRNA_exonic
CAediting_381665chr4_119043778_+ncRNA_exonic
CAediting_381666chr4_119043780_+ncRNA_exonic
CAediting_381667chr4_119043782_+ncRNA_exonic
CAediting_381668chr4_119043791_+ncRNA_exonic
CAediting_381669chr4_119043818_+ncRNA_exonic
CAediting_381670chr4_119043844_+ncRNA_exonic
CAediting_381671chr4_119043850_+ncRNA_exonic
CAediting_381672chr4_119043853_+ncRNA_exonic
CAediting_381673chr4_119043858_+ncRNA_exonic
CAediting_381674chr4_119043859_+ncRNA_exonic
CAediting_381675chr4_119043870_+ncRNA_exonic
CAediting_381676chr4_119043879_+ncRNA_exonic
CAediting_381677chr4_119043883_+ncRNA_exonic
CAediting_381678chr4_119043895_+ncRNA_exonic
CAediting_381679chr4_119043903_+ncRNA_exonic
CAediting_381680chr4_119043908_+ncRNA_exonic
CAediting_381681chr4_119043922_+ncRNA_exonic
CAediting_381682chr4_119044550_+intronic
CAediting_381683chr4_119044562_+intronic
CAediting_381684chr4_119044574_+intronic
CAediting_381685chr4_119044605_+intronic
CAediting_381686chr4_119044610_+intronic
CAediting_381687chr4_119044611_+intronic
CAediting_381688chr4_119044617_+intronic
CAediting_381689chr4_119044625_+intronic
CAediting_381690chr4_119045345_+intronic
CAediting_381691chr4_119045360_+intronic
CAediting_381692chr4_119045371_+intronic
CAediting_381693chr4_119045384_+intronic
CAediting_381694chr4_119045385_+intronic
CAediting_381695chr4_119045405_+intronic
CAediting_381696chr4_119045408_+intronic
CAediting_381697chr4_119047079_+intronic
CAediting_381698chr4_119047091_+intronic
CAediting_381699chr4_119047109_+intronic
CAediting_381700chr4_119047117_+intronic
CAediting_381701chr4_119047122_+intronic
CAediting_381702chr4_119047124_+intronic
CAediting_381703chr4_119047125_+intronic
CAediting_381704chr4_119047130_+intronic
CAediting_381705chr4_119047140_+intronic
CAediting_381706chr4_119047141_+intronic
CAediting_381707chr4_119047161_+intronic
CAediting_381708chr4_119047165_+intronic
CAediting_381709chr4_119047178_+intronic
CAediting_381710chr4_119047186_+intronic
CAediting_381711chr4_119047187_+intronic
CAediting_381712chr4_119047200_+intronic
CAediting_381713chr4_119047202_+intronic
CAediting_381714chr4_119047206_+intronic
CAediting_381715chr4_119047209_+intronic
CAediting_381716chr4_119047226_+intronic
CAediting_381717chr4_119047234_+intronic
CAediting_381718chr4_119047240_+intronic
CAediting_381719chr4_119047243_+intronic
CAediting_381720chr4_119047249_+intronic
CAediting_381721chr4_119047269_+intronic
CAediting_381722chr4_119047275_+intronic
CAediting_381723chr4_119047278_+intronic
CAediting_381724chr4_119047281_+intronic
CAediting_381725chr4_119047282_+intronic
CAediting_381726chr4_119047289_+intronic
CAediting_381727chr4_119047294_+intronic
CAediting_381728chr4_119047319_+intronic
CAediting_381729chr4_119047320_+intronic
CAediting_381730chr4_119047321_+intronic
CAediting_381731chr4_119047333_+intronic
CAediting_381732chr4_119047341_+intronic
CAediting_381733chr4_119047342_+intronic
CAediting_381734chr4_119050060_+intronic
CAediting_381735chr4_119050070_+intronic
CAediting_381736chr4_119050082_+intronic
CAediting_381737chr4_119050107_+intronic
CAediting_381738chr4_119050130_+intronic
CAediting_381739chr4_119050146_+intronic
CAediting_381740chr4_119050153_+intronic
CAediting_381741chr4_119050154_+intronic
CAediting_381742chr4_119050161_+intronic
CAediting_381743chr4_119050167_+intronic
CAediting_381744chr4_119050221_+intronic
CAediting_381745chr4_119050225_+intronic
CAediting_381746chr4_119050244_+intronic
CAediting_381747chr4_119050247_+intronic
CAediting_381748chr4_119050264_+intronic
CAediting_381749chr4_119050273_+intronic
CAediting_381750chr4_119050281_+intronic
CAediting_381751chr4_119050292_+intronic
CAediting_381752chr4_119050303_+intronic
CAediting_381753chr4_119054498_+intronic
CAediting_381754chr4_119055191_+intronic
CAediting_381755chr4_119055221_+intronic
CAediting_381756chr4_119055229_+intronic
CAediting_381757chr4_119055231_+intronic
CAediting_381758chr4_119055232_+intronic
CAediting_381759chr4_119055251_+intronic
CAediting_381760chr4_119055252_+intronic
CAediting_381761chr4_119055256_+intronic
CAediting_381762chr4_119055278_+intronic
CAediting_381763chr4_119055281_+intronic
CAediting_381764chr4_119055291_+intronic
CAediting_381765chr4_119055335_+intronic
CAediting_381766chr4_119055338_+intronic
CAediting_381767chr4_119055364_+intronic
CAediting_381768chr4_119055376_+intronic
CAediting_381769chr4_119055384_+intronic
CAediting_381770chr4_119055389_+intronic
CAediting_381771chr4_119055390_+intronic
CAediting_381772chr4_119055407_+intronic
CAediting_381773chr4_119055417_+intronic
CAediting_381774chr4_119055429_+intronic
CAediting_381775chr4_119056275_+intronic
CAediting_381776chr4_119056298_+intronic
CAediting_381777chr4_119056430_+intronic
CAediting_381778chr4_119056436_+intronic
CAediting_381779chr4_119056477_+intronic
CAediting_381780chr4_119056485_+intronic
CAediting_381781chr4_119056498_+intronic
CAediting_381782chr4_119056506_+intronic
CAediting_381783chr4_119056541_+intronic
CAediting_381784chr4_119058525_+UTR3
CAediting_381785chr4_119058531_+UTR3
CAediting_381786chr4_119058549_+UTR3
CAediting_381787chr4_119058575_+UTR3
CAediting_381788chr4_119058614_+UTR3
CAediting_381789chr4_119058624_+UTR3
CAediting_381790chr4_119058627_+UTR3
CAediting_381791chr4_119058655_+UTR3
CAediting_381792chr4_119058735_+UTR3
CAediting_381793chr4_119058756_+UTR3
CAediting_381794chr4_119058760_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_381605chr4_118851312_+SINEAluAluSp
CAediting_381606chr4_118851323_+SINEAluAluSp
CAediting_381607chr4_118851332_+SINEAluAluSp
CAediting_381608chr4_118851367_+SINEAluAluSp
CAediting_381609chr4_118873250_+LINEL1L1PB4
CAediting_381610chr4_118880702_+SINEAluAluSg7
CAediting_381611chr4_118916802_+SINEAluAluJr
CAediting_381612chr4_118916862_+SINEAluAluJr
CAediting_381613chr4_118916898_+SINEAluAluJr
CAediting_381614chr4_118916970_+SINEAluAluJr
CAediting_381615chr4_118916987_+SINEAluAluJr
CAediting_381616chr4_118917182_+SINEAluAluSq2
CAediting_381617chr4_118917239_+SINEAluAluSq2
CAediting_381618chr4_118917242_+SINEAluAluSq2
CAediting_381619chr4_118917243_+SINEAluAluSq2
CAediting_381620chr4_118917297_+SINEAluAluSq2
CAediting_381621chr4_118917341_+SINEAluAluSq2
CAediting_381622chr4_118930700_+SINEAluAluJo
CAediting_381623chr4_118955099_+SINEAluAluSz6
CAediting_381624chr4_118955118_+SINEAluAluSz6
CAediting_381625chr4_118955142_+SINEAluAluSz6
CAediting_381626chr4_118956922_+SINEAluAluSx1
CAediting_381627chr4_118956965_+SINEAluAluSx1
CAediting_381628chr4_118963588_+SINEAluFLAM_A
CAediting_381643chr4_118999228_+SINEAluAluJb
CAediting_381649chr4_119032765_+SINEAluAluJr
CAediting_381650chr4_119032791_+SINEAluAluJr
CAediting_381651chr4_119032821_+SINEAluAluJr
CAediting_381652chr4_119043106_+SINEAluAluYj4
CAediting_381653chr4_119043131_+SINEAluAluYj4
CAediting_381654chr4_119043144_+SINEAluAluYj4
CAediting_381655chr4_119043674_+SINEAluAluSz
CAediting_381656chr4_119043682_+SINEAluAluSz
CAediting_381657chr4_119043683_+SINEAluAluSz
CAediting_381658chr4_119043728_+SINEAluAluSz
CAediting_381659chr4_119043736_+SINEAluAluSz
CAediting_381660chr4_119043737_+SINEAluAluSz
CAediting_381661chr4_119043742_+SINEAluAluSz
CAediting_381662chr4_119043762_+SINEAluAluSz
CAediting_381663chr4_119043767_+SINEAluAluSz
CAediting_381664chr4_119043777_+SINEAluAluSz
CAediting_381665chr4_119043778_+SINEAluAluSz
CAediting_381666chr4_119043780_+SINEAluAluSz
CAediting_381667chr4_119043782_+SINEAluAluSz
CAediting_381668chr4_119043791_+SINEAluAluSz
CAediting_381669chr4_119043818_+SINEAluAluSz
CAediting_381670chr4_119043844_+SINEAluAluSz
CAediting_381671chr4_119043850_+SINEAluAluSz
CAediting_381672chr4_119043853_+SINEAluAluSz
CAediting_381673chr4_119043858_+SINEAluAluSz
CAediting_381674chr4_119043859_+SINEAluAluSz
CAediting_381675chr4_119043870_+SINEAluAluSz
CAediting_381676chr4_119043879_+SINEAluAluSz
CAediting_381677chr4_119043883_+SINEAluAluSz
CAediting_381678chr4_119043895_+SINEAluAluSz
CAediting_381679chr4_119043903_+SINEAluAluSz
CAediting_381680chr4_119043908_+SINEAluAluSz
CAediting_381681chr4_119043922_+SINEAluAluSz
CAediting_381682chr4_119044550_+SINEAluAluSx3
CAediting_381683chr4_119044562_+SINEAluAluSx3
CAediting_381684chr4_119044574_+SINEAluAluSx3
CAediting_381685chr4_119044605_+SINEAluAluSx3
CAediting_381686chr4_119044610_+SINEAluAluSx3
CAediting_381687chr4_119044611_+SINEAluAluSx3
CAediting_381688chr4_119044617_+SINEAluAluSx3
CAediting_381689chr4_119044625_+SINEAluAluSx3
CAediting_381690chr4_119045345_+SINEAluAluJb
CAediting_381691chr4_119045360_+SINEAluAluJb
CAediting_381692chr4_119045371_+SINEAluAluJb
CAediting_381693chr4_119045384_+SINEAluAluJb
CAediting_381694chr4_119045385_+SINEAluAluJb
CAediting_381695chr4_119045405_+SINEAluAluJb
CAediting_381696chr4_119045408_+SINEAluAluJb
CAediting_381697chr4_119047079_+SINEAluAluSq2
CAediting_381698chr4_119047091_+SINEAluAluSq2
CAediting_381699chr4_119047109_+SINEAluAluSq2
CAediting_381700chr4_119047117_+SINEAluAluSq2
CAediting_381701chr4_119047122_+SINEAluAluSq2
CAediting_381702chr4_119047124_+SINEAluAluSq2
CAediting_381703chr4_119047125_+SINEAluAluSq2
CAediting_381704chr4_119047130_+SINEAluAluSq2
CAediting_381705chr4_119047140_+SINEAluAluSq2
CAediting_381706chr4_119047141_+SINEAluAluSq2
CAediting_381707chr4_119047161_+SINEAluAluSq2
CAediting_381708chr4_119047165_+SINEAluAluSq2
CAediting_381709chr4_119047178_+SINEAluAluSq2
CAediting_381710chr4_119047186_+SINEAluAluSq2
CAediting_381711chr4_119047187_+SINEAluAluSq2
CAediting_381712chr4_119047200_+SINEAluAluSq2
CAediting_381713chr4_119047202_+SINEAluAluSq2
CAediting_381714chr4_119047206_+SINEAluAluSq2
CAediting_381715chr4_119047209_+SINEAluAluSq2
CAediting_381716chr4_119047226_+SINEAluAluSq2
CAediting_381717chr4_119047234_+SINEAluAluSq2
CAediting_381718chr4_119047240_+SINEAluAluSq2
CAediting_381719chr4_119047243_+SINEAluAluSq2
CAediting_381720chr4_119047249_+SINEAluAluSq2
CAediting_381721chr4_119047269_+SINEAluAluSq2
CAediting_381722chr4_119047275_+SINEAluAluSq2
CAediting_381723chr4_119047278_+SINEAluAluSq2
CAediting_381724chr4_119047281_+SINEAluAluSq2
CAediting_381725chr4_119047282_+SINEAluAluSq2
CAediting_381726chr4_119047289_+SINEAluAluSq2
CAediting_381727chr4_119047294_+SINEAluAluSq2
CAediting_381728chr4_119047319_+SINEAluAluSq2
CAediting_381729chr4_119047320_+SINEAluAluSq2
CAediting_381730chr4_119047321_+SINEAluAluSq2
CAediting_381731chr4_119047333_+SINEAluAluSq2
CAediting_381732chr4_119047341_+SINEAluAluSq2
CAediting_381733chr4_119047342_+SINEAluAluSq2
CAediting_381734chr4_119050060_+SINEAluAluSx1
CAediting_381735chr4_119050070_+SINEAluAluSx1
CAediting_381736chr4_119050082_+SINEAluAluSx1
CAediting_381737chr4_119050107_+SINEAluAluSx1
CAediting_381738chr4_119050130_+SINEAluAluSx1
CAediting_381739chr4_119050146_+SINEAluAluSx1
CAediting_381740chr4_119050153_+SINEAluAluSx1
CAediting_381741chr4_119050154_+SINEAluAluSx1
CAediting_381742chr4_119050161_+SINEAluAluSx1
CAediting_381743chr4_119050167_+SINEAluAluSx1
CAediting_381744chr4_119050221_+SINEAluAluSx1
CAediting_381745chr4_119050225_+SINEAluAluSx1
CAediting_381746chr4_119050244_+SINEAluAluSx1
CAediting_381747chr4_119050247_+SINEAluAluSx1
CAediting_381748chr4_119050264_+SINEAluAluSx1
CAediting_381749chr4_119050273_+SINEAluAluSx1
CAediting_381750chr4_119050281_+SINEAluAluSx1
CAediting_381751chr4_119050292_+SINEAluAluSx1
CAediting_381752chr4_119050303_+SINEAluAluSx1
CAediting_381753chr4_119054498_+LTRERV1LTR28B
CAediting_381754chr4_119055191_+SINEAluAluSz
CAediting_381755chr4_119055221_+SINEAluAluSz
CAediting_381756chr4_119055229_+SINEAluAluSz
CAediting_381757chr4_119055231_+SINEAluAluSz
CAediting_381758chr4_119055232_+SINEAluAluSz
CAediting_381759chr4_119055251_+SINEAluAluSz
CAediting_381760chr4_119055252_+SINEAluAluSz
CAediting_381761chr4_119055256_+SINEAluAluSz
CAediting_381762chr4_119055278_+SINEAluAluSz
CAediting_381763chr4_119055281_+SINEAluAluSz
CAediting_381764chr4_119055291_+SINEAluAluSz
CAediting_381765chr4_119055335_+SINEAluAluSz
CAediting_381766chr4_119055338_+SINEAluAluSz
CAediting_381767chr4_119055364_+SINEAluAluSz
CAediting_381768chr4_119055376_+SINEAluAluSz
CAediting_381769chr4_119055384_+SINEAluAluSz
CAediting_381770chr4_119055389_+SINEAluAluSz
CAediting_381771chr4_119055390_+SINEAluAluSz
CAediting_381772chr4_119055407_+SINEAluAluSz
CAediting_381773chr4_119055417_+SINEAluAluSz
CAediting_381774chr4_119055429_+SINEAluAluSz
CAediting_381775chr4_119056275_+SINEAluAluJr
CAediting_381776chr4_119056298_+SINEAluAluJr
CAediting_381777chr4_119056430_+SINEAluAluJr
CAediting_381778chr4_119056436_+SINEAluAluJr
CAediting_381779chr4_119056477_+SINEAluAluJr
CAediting_381780chr4_119056485_+SINEAluAluJr
CAediting_381781chr4_119056498_+SINEAluAluJr
CAediting_381782chr4_119056506_+SINEAluAluJr
CAediting_381783chr4_119056541_+SINEAluAluJr
CAediting_381784chr4_119058525_+SINEAluAluSg
CAediting_381785chr4_119058531_+SINEAluAluSg
CAediting_381786chr4_119058549_+SINEAluAluSg
CAediting_381787chr4_119058575_+SINEAluAluSg
CAediting_381788chr4_119058614_+SINEAluAluSg
CAediting_381789chr4_119058624_+SINEAluAluSg
CAediting_381790chr4_119058627_+SINEAluAluSg
CAediting_381791chr4_119058655_+SINEAluAluSg
CAediting_381792chr4_119058735_+SINEAluAluSg
CAediting_381793chr4_119058756_+SINEAluAluSg
CAediting_381794chr4_119058760_+SINEAluAluSg

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RNA A-to-I editing events in the alternative splicing sites for SYNPO2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
IRCAediting_381648chr4_119031758_+119031758:1190317665SS3+0iAAGGTCAAT3.77GAGGTCAAT2.23

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000172403.9.SYNPO2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000172403.9.SYNPO2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SYNPO2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SYNPO2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for SYNPO2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-3130-3p1190585251190585306mer119058511119058531147.00-27.99
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-3130-3p1190585251190585306mer119058511119058531147.00-27.99
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-324-3p1190585271190585337mer-m8119058512119058534150.00-25.97
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-6807-3p1190585261190585316mer119058510119058532154.00-27.39
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-3130-3p1190585251190585306mer119058511119058531147.00-27.99
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-3130-3p1190585251190585306mer119058511119058531147.00-27.99
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-324-3p1190585271190585337mer-m8119058512119058534150.00-25.97
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-6807-3p1190585261190585316mer119058510119058532154.00-27.39
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-3130-3p1190585251190585306mer119058511119058531147.00-27.99
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-3130-3p1190585251190585306mer119058511119058531147.00-27.99
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-324-3p1190585271190585337mer-m8119058512119058534150.00-25.97
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-6807-3p1190585261190585316mer119058510119058532154.00-27.39
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000448416hsa-miR-6847-3p1190586181190586247mer-m8119058603119058625153.00-22.19
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000307142hsa-miR-6847-3p1190586181190586247mer-m8119058603119058625153.00-22.19
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000504178hsa-miR-6847-3p1190586181190586247mer-m8119058603119058625153.00-22.19
CAediting_381792chr4_119058735_+ENSG00000172403.9ENST00000448416hsa-miR-3189-3p1190587291190587357mer-m8119058714119058736153.00-25.70
CAediting_381792chr4_119058735_+ENSG00000172403.9ENST00000448416hsa-miR-6813-3p1190587301190587367mer-m8119058717119058737140.00-10.68
CAediting_381792chr4_119058735_+ENSG00000172403.9ENST00000307142hsa-miR-3189-3p1190587291190587357mer-m8119058714119058736153.00-25.70
CAediting_381792chr4_119058735_+ENSG00000172403.9ENST00000307142hsa-miR-6813-3p1190587301190587367mer-m8119058717119058737140.00-10.68
CAediting_381792chr4_119058735_+ENSG00000172403.9ENST00000504178hsa-miR-3189-3p1190587291190587357mer-m8119058714119058736153.00-25.70
CAediting_381792chr4_119058735_+ENSG00000172403.9ENST00000504178hsa-miR-6813-3p1190587301190587367mer-m8119058717119058737140.00-10.68
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000448416hsa-miR-6621190587511190587566mer119058735119058757153.00-32.51
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000448416hsa-miR-663b1190587541190587607mer-m8119058738119058761149.00-31.22
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000307142hsa-miR-6621190587511190587566mer119058735119058757153.00-32.51
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000307142hsa-miR-663b1190587541190587607mer-m8119058738119058761149.00-31.22
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000504178hsa-miR-6621190587511190587566mer119058735119058757153.00-32.51
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000504178hsa-miR-663b1190587541190587607mer-m8119058738119058761149.00-31.22
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000448416hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000448416hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000448416hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000307142hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000307142hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000307142hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000504178hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000504178hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95
CAediting_381794chr4_119058760_+ENSG00000172403.9ENST00000504178hsa-miR-6770-3p1190587561190587627mer-m8119058742119058763154.00-21.95

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000448416hsa-miR-12061190586181190586247mer-m8119058605119058625141-11.6
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000448416hsa-miR-203a-5p1190586211190586277mer-m8119058604119058628148-15.99
CAediting_381790chr4_119058627_+ENSG00000172403.9ENST00000448416hsa-miR-203a-5p1190586211190586277mer-m8119058604119058628148-15.99
CAediting_381786chr4_119058549_+ENSG00000172403.9ENST00000448416hsa-miR-31741190585451190585506mer119058529119058551147-20.36
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-32-5p1190585251190585317mer-m8119058509119058532147-13.38
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-363-3p1190585251190585317mer-m8119058514119058532142-14.57
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000448416hsa-miR-42841190587521190587598mer-1a119058742119058759143-15.61
CAediting_381784chr4_119058525_+ENSG00000172403.9ENST00000448416hsa-miR-508-5p1190585201190585267mer-m8119058503119058527153-20.24
CAediting_381786chr4_119058549_+ENSG00000172403.9ENST00000448416hsa-miR-6807-5p1190585421190585487mer-m8119058530119058549143-17.43
CAediting_381784chr4_119058525_+ENSG00000172403.9ENST00000448416hsa-miR-77031190585231190585308mer-1a119058508119058530154-18.47
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000448416hsa-miR-876-3p1190586221190586298mer-1a119058607119058629151-22.46
CAediting_381790chr4_119058627_+ENSG00000172403.9ENST00000448416hsa-miR-876-3p1190586221190586298mer-1a119058607119058629151-22.46
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-92a-3p1190585251190585317mer-m8119058515119058532147-20.43
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-92a-3p1190585251190585317mer-m8119058515119058532147-20.43
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000448416hsa-miR-92b-3p1190585251190585317mer-m8119058511119058532150-17.16
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000307142hsa-miR-12061190586181190586247mer-m8119058605119058625141-11.6
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000307142hsa-miR-203a-5p1190586211190586277mer-m8119058604119058628148-15.99
CAediting_381790chr4_119058627_+ENSG00000172403.9ENST00000307142hsa-miR-203a-5p1190586211190586277mer-m8119058604119058628148-15.99
CAediting_381786chr4_119058549_+ENSG00000172403.9ENST00000307142hsa-miR-31741190585451190585506mer119058529119058551147-20.36
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-32-5p1190585251190585317mer-m8119058509119058532147-13.38
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-363-3p1190585251190585317mer-m8119058514119058532142-14.57
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000307142hsa-miR-42841190587521190587598mer-1a119058742119058759143-15.61
CAediting_381784chr4_119058525_+ENSG00000172403.9ENST00000307142hsa-miR-508-5p1190585201190585267mer-m8119058503119058527153-20.24
CAediting_381786chr4_119058549_+ENSG00000172403.9ENST00000307142hsa-miR-6807-5p1190585421190585487mer-m8119058530119058549143-17.43
CAediting_381784chr4_119058525_+ENSG00000172403.9ENST00000307142hsa-miR-77031190585231190585308mer-1a119058508119058530154-18.47
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000307142hsa-miR-876-3p1190586221190586298mer-1a119058607119058629151-22.46
CAediting_381790chr4_119058627_+ENSG00000172403.9ENST00000307142hsa-miR-876-3p1190586221190586298mer-1a119058607119058629151-22.46
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-92a-3p1190585251190585317mer-m8119058515119058532147-20.43
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-92a-3p1190585251190585317mer-m8119058515119058532147-20.43
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000307142hsa-miR-92b-3p1190585251190585317mer-m8119058511119058532150-17.16
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000504178hsa-miR-12061190586181190586247mer-m8119058605119058625141-11.6
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000504178hsa-miR-203a-5p1190586211190586277mer-m8119058604119058628148-15.99
CAediting_381790chr4_119058627_+ENSG00000172403.9ENST00000504178hsa-miR-203a-5p1190586211190586277mer-m8119058604119058628148-15.99
CAediting_381786chr4_119058549_+ENSG00000172403.9ENST00000504178hsa-miR-31741190585451190585506mer119058529119058551147-20.36
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-32-5p1190585251190585317mer-m8119058509119058532147-13.38
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-363-3p1190585251190585317mer-m8119058514119058532142-14.57
CAediting_381793chr4_119058756_+ENSG00000172403.9ENST00000504178hsa-miR-42841190587521190587598mer-1a119058742119058759143-15.61
CAediting_381784chr4_119058525_+ENSG00000172403.9ENST00000504178hsa-miR-508-5p1190585201190585267mer-m8119058503119058527153-20.24
CAediting_381786chr4_119058549_+ENSG00000172403.9ENST00000504178hsa-miR-6807-5p1190585421190585487mer-m8119058530119058549143-17.43
CAediting_381784chr4_119058525_+ENSG00000172403.9ENST00000504178hsa-miR-77031190585231190585308mer-1a119058508119058530154-18.47
CAediting_381789chr4_119058624_+ENSG00000172403.9ENST00000504178hsa-miR-876-3p1190586221190586298mer-1a119058607119058629151-22.46
CAediting_381790chr4_119058627_+ENSG00000172403.9ENST00000504178hsa-miR-876-3p1190586221190586298mer-1a119058607119058629151-22.46
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-92a-3p1190585251190585317mer-m8119058515119058532147-20.43
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-92a-3p1190585251190585317mer-m8119058515119058532147-20.43
CAediting_381785chr4_119058531_+ENSG00000172403.9ENST00000504178hsa-miR-92b-3p1190585251190585317mer-m8119058511119058532150-17.16

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_688080chr9_63819626_+ENSG00000172403.9ENST00000448416hsa-miR-4477b1190576961190577038mer-1a119057683119057703154-10.85
CAediting_688081chr9_63819627_+ENSG00000172403.9ENST00000448416hsa-miR-4477b1190607231190607308mer-1a119060707119060730150-11.32
CAediting_688081chr9_63819627_+ENSG00000172403.9ENST00000307142hsa-miR-4477b1190607231190607308mer-1a119060707119060730150-11.32
CAediting_688081chr9_63819627_+ENSG00000172403.9ENST00000504178hsa-miR-4477b1190607231190607308mer-1a119060707119060730150-11.32
CAediting_1229414chr17_67471546_+ENSG00000172403.9ENST00000448416hsa-miR-548aa1190586871190586937mer-m8119058670119058694144-12.76
CAediting_1229414chr17_67471546_+ENSG00000172403.9ENST00000448416hsa-miR-548aa1190580301190580367mer-m8119058013119058037154-8.44
CAediting_1160181chr17_7017644_-ENSG00000172403.9ENST00000448416hsa-miR-195-3p1190583761190583827mer-m8119058364119058383144-9.5
CAediting_1351755chr19_40282625_-ENSG00000172403.9ENST00000448416hsa-miR-6411190608981190609047mer-m8119060883119060905151-20.05
CAediting_228905chr2_188297554_+ENSG00000172403.9ENST00000448416hsa-miR-561-3p1190582641190582718mer-1a119058252119058271141-6.06
CAediting_524911chr7_5495852_-ENSG00000172403.9ENST00000448416hsa-miR-589-3p1190585021190585087mer-m8119058485119058509158-19.59
CAediting_1229414chr17_67471546_+ENSG00000172403.9ENST00000307142hsa-miR-548aa1190586871190586937mer-m8119058670119058694144-12.76
CAediting_1229414chr17_67471546_+ENSG00000172403.9ENST00000307142hsa-miR-548aa1190580301190580367mer-m8119058013119058037154-8.44
CAediting_1160181chr17_7017644_-ENSG00000172403.9ENST00000307142hsa-miR-195-3p1190583761190583827mer-m8119058364119058383144-9.5
CAediting_1351755chr19_40282625_-ENSG00000172403.9ENST00000307142hsa-miR-6411190608981190609047mer-m8119060883119060905151-20.05
CAediting_228905chr2_188297554_+ENSG00000172403.9ENST00000307142hsa-miR-561-3p1190582641190582718mer-1a119058252119058271141-6.06
CAediting_524911chr7_5495852_-ENSG00000172403.9ENST00000307142hsa-miR-589-3p1190585021190585087mer-m8119058485119058509158-19.59
CAediting_1229414chr17_67471546_+ENSG00000172403.9ENST00000504178hsa-miR-548aa1190586871190586937mer-m8119058670119058694144-12.76
CAediting_1229414chr17_67471546_+ENSG00000172403.9ENST00000504178hsa-miR-548aa1190580301190580367mer-m8119058013119058037154-8.44
CAediting_1160181chr17_7017644_-ENSG00000172403.9ENST00000504178hsa-miR-195-3p1190583761190583827mer-m8119058364119058383144-9.5
CAediting_1351755chr19_40282625_-ENSG00000172403.9ENST00000504178hsa-miR-6411190608981190609047mer-m8119060883119060905151-20.05
CAediting_228905chr2_188297554_+ENSG00000172403.9ENST00000504178hsa-miR-561-3p1190582641190582718mer-1a119058252119058271141-6.06
CAediting_524911chr7_5495852_-ENSG00000172403.9ENST00000504178hsa-miR-589-3p1190585021190585087mer-m8119058485119058509158-19.59

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_688080chr9_63819626_+ENSG00000172403.9ENST00000448416hsa-miR-4477b1190590221190590287mer-m8119059008119059029152-10.45
CAediting_688081chr9_63819627_+ENSG00000172403.9ENST00000448416hsa-miR-4477b1190590221190590287mer-m8119059008119059029152-10.45
CAediting_396018chr5_1062918_-ENSG00000172403.9ENST00000448416hsa-miR-46351190578211190578288mer-1a119057808119057828148-15.57
CAediting_414656chr5_72878640_+ENSG00000172403.9ENST00000448416hsa-miR-4804-3p1190593981190594058mer-1a119059388119059405149-16.47
CAediting_524911chr7_5495852_-ENSG00000172403.9ENST00000448416hsa-miR-589-3p1190593861190593938mer-1a119059366119059393149-16.51
CAediting_1399425chr20_1392958_-ENSG00000172403.9ENST00000448416hsa-miR-6869-5p1190582691190582768mer-1a119058255119058276142-14.64
CAediting_468389chr6_31355314_-ENSG00000172403.9ENST00000448416hsa-miR-6891-5p1190607731190607797mer-m8119060761119060780149-17.57
CAediting_688081chr9_63819627_+ENSG00000172403.9ENST00000307142hsa-miR-4477b1190590221190590287mer-m8119059008119059029152-10.45
CAediting_414656chr5_72878640_+ENSG00000172403.9ENST00000307142hsa-miR-4804-3p1190593981190594058mer-1a119059388119059405149-16.47
CAediting_524911chr7_5495852_-ENSG00000172403.9ENST00000307142hsa-miR-589-3p1190593861190593938mer-1a119059366119059393149-16.51
CAediting_1399425chr20_1392958_-ENSG00000172403.9ENST00000307142hsa-miR-6869-5p1190582691190582768mer-1a119058255119058276142-14.64
CAediting_688081chr9_63819627_+ENSG00000172403.9ENST00000504178hsa-miR-4477b1190590221190590287mer-m8119059008119059029152-10.45
CAediting_414656chr5_72878640_+ENSG00000172403.9ENST00000504178hsa-miR-4804-3p1190593981190594058mer-1a119059388119059405149-16.47
CAediting_524911chr7_5495852_-ENSG00000172403.9ENST00000504178hsa-miR-589-3p1190593861190593938mer-1a119059366119059393149-16.51
CAediting_1399425chr20_1392958_-ENSG00000172403.9ENST00000504178hsa-miR-6869-5p1190582691190582768mer-1a119058255119058276142-14.64

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SYNPO2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.
ENST00000610556.3protein_codingSoverviewSoverview
ENST00000307142.7protein_codingSoverviewSoverview
ENST00000429713.5protein_codingSoverviewSoverview
ENST00000434046.5protein_codingSoverviewSoverview
ENST00000448416.5protein_codingSoverviewSoverview
ENST00000504178.1protein_codingSoverviewSoverview

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI
CAediting_381644ENST00000610556.3chr4_119029873_+-1235.00-1232.10-1243.10
CAediting_381645ENST00000610556.3chr4_119030061_+-1235.20-1232.10-1243.10
CAediting_381646ENST00000610556.3chr4_119030069_+-1232.40-1232.10-1243.10
CAediting_381647ENST00000610556.3chr4_119031262_+-1236.60-1232.10-1243.10
CAediting_381648ENST00000610556.3chr4_119031758_+-1234.70-1232.10-1243.10
CAediting_381644ENST00000307142.7chr4_119029873_+-2114.80-2114.80-2138.40
CAediting_381645ENST00000307142.7chr4_119030061_+-2119.10-2114.80-2138.40
CAediting_381646ENST00000307142.7chr4_119030069_+-2115.60-2114.80-2138.40
CAediting_381647ENST00000307142.7chr4_119031262_+-2119.30-2114.80-2138.40
CAediting_381648ENST00000307142.7chr4_119031758_+-2116.70-2114.80-2138.40
CAediting_381784ENST00000307142.7chr4_119058525_+-2118.40-2114.80-2138.40
CAediting_381785ENST00000307142.7chr4_119058531_+-2115.30-2114.80-2138.40
CAediting_381786ENST00000307142.7chr4_119058549_+-2114.40-2114.80-2138.40
CAediting_381787ENST00000307142.7chr4_119058575_+-2114.80-2114.80-2138.40
CAediting_381788ENST00000307142.7chr4_119058614_+-2115.80-2114.80-2138.40
CAediting_381789ENST00000307142.7chr4_119058624_+-2114.80-2114.80-2138.40
CAediting_381790ENST00000307142.7chr4_119058627_+-2115.00-2114.80-2138.40
CAediting_381791ENST00000307142.7chr4_119058655_+-2114.80-2114.80-2138.40
CAediting_381792ENST00000307142.7chr4_119058735_+-2114.80-2114.80-2138.40
CAediting_381793ENST00000307142.7chr4_119058756_+-2118.90-2114.80-2138.40
CAediting_381794ENST00000307142.7chr4_119058760_+-2115.00-2114.80-2138.40
CAediting_381644ENST00000429713.5chr4_119029873_+-2853.30-2852.10-2864.60
CAediting_381645ENST00000429713.5chr4_119030061_+-2853.90-2852.10-2864.60
CAediting_381646ENST00000429713.5chr4_119030069_+-2856.50-2852.10-2864.60
CAediting_381647ENST00000429713.5chr4_119031262_+-2856.60-2852.10-2864.60
CAediting_381648ENST00000429713.5chr4_119031758_+-2853.30-2852.10-2864.60
CAediting_381649ENST00000429713.5chr4_119032765_+-2852.10-2852.10-2864.60
CAediting_381650ENST00000429713.5chr4_119032791_+-2851.20-2852.10-2864.60
CAediting_381651ENST00000429713.5chr4_119032821_+-2853.40-2852.10-2864.60
CAediting_381644ENST00000434046.5chr4_119029873_+-1121.70-1121.70-1132.50
CAediting_381645ENST00000434046.5chr4_119030061_+-1126.00-1121.70-1132.50
CAediting_381646ENST00000434046.5chr4_119030069_+-1122.50-1121.70-1132.50
CAediting_381647ENST00000434046.5chr4_119031262_+-1126.20-1121.70-1132.50
CAediting_381648ENST00000434046.5chr4_119031758_+-1123.60-1121.70-1132.50
CAediting_381784ENST00000448416.5chr4_119058525_+-1132.30-1128.70-1141.50
CAediting_381785ENST00000448416.5chr4_119058531_+-1129.20-1128.70-1141.50
CAediting_381786ENST00000448416.5chr4_119058549_+-1128.30-1128.70-1141.50
CAediting_381787ENST00000448416.5chr4_119058575_+-1128.70-1128.70-1141.50
CAediting_381788ENST00000448416.5chr4_119058614_+-1129.70-1128.70-1141.50
CAediting_381789ENST00000448416.5chr4_119058624_+-1128.70-1128.70-1141.50
CAediting_381790ENST00000448416.5chr4_119058627_+-1128.90-1128.70-1141.50
CAediting_381791ENST00000448416.5chr4_119058655_+-1128.70-1128.70-1141.50
CAediting_381792ENST00000448416.5chr4_119058735_+-1128.70-1128.70-1141.50
CAediting_381793ENST00000448416.5chr4_119058756_+-1132.80-1128.70-1141.50
CAediting_381794ENST00000448416.5chr4_119058760_+-1128.90-1128.70-1141.50
CAediting_381644ENST00000504178.1chr4_119029873_+-1900.60-1900.60-1925.30
CAediting_381645ENST00000504178.1chr4_119030061_+-1904.90-1900.60-1925.30
CAediting_381646ENST00000504178.1chr4_119030069_+-1901.40-1900.60-1925.30
CAediting_381647ENST00000504178.1chr4_119031262_+-1905.10-1900.60-1925.30
CAediting_381648ENST00000504178.1chr4_119031758_+-1903.60-1900.60-1925.30
CAediting_381784ENST00000504178.1chr4_119058525_+-1904.20-1900.60-1925.30
CAediting_381785ENST00000504178.1chr4_119058531_+-1901.10-1900.60-1925.30
CAediting_381786ENST00000504178.1chr4_119058549_+-1900.20-1900.60-1925.30
CAediting_381787ENST00000504178.1chr4_119058575_+-1900.60-1900.60-1925.30
CAediting_381788ENST00000504178.1chr4_119058614_+-1901.60-1900.60-1925.30
CAediting_381789ENST00000504178.1chr4_119058624_+-1900.60-1900.60-1925.30
CAediting_381790ENST00000504178.1chr4_119058627_+-1900.80-1900.60-1925.30
CAediting_381791ENST00000504178.1chr4_119058655_+-1900.60-1900.60-1925.30
CAediting_381792ENST00000504178.1chr4_119058735_+-1900.60-1900.60-1925.30
CAediting_381793ENST00000504178.1chr4_119058756_+-1904.70-1900.60-1925.30
CAediting_381794ENST00000504178.1chr4_119058760_+-1900.80-1900.60-1925.30

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Relation with ADAR for SYNPO2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for SYNPO2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for SYNPO2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for SYNPO2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for SYNPO2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
SYNPO2C4721610Carcinoma, Ovarian Epithelial1CTD_human