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Editing gene: SNX31 (CAeditome ID:169166)

Gene summary for SNX31

Gene summary

Gene information	Gene symbol	SNX31
	Gene ID	169166
	Gene name	sorting nexin 31
	Synonyms	-
	Cytomap	8q22.3
	Type of gene	protein-coding
	Description	sorting nexin-31
	Modification date	20210518
	UniProtAcc	Q8N9S9
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for SNX31

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000174226.7

RNA A-to-I editing events in Cancer.

CAediting_653684(100578789, -), CAediting_653685(100578814, -), CAediting_653686(100578860, -), CAediting_653687(100578866, -), CAediting_653688(100578886, -), CAediting_653689(100579955, -), CAediting_653690(100580031, -), CAediting_653691(100580052, -), CAediting_653692(100580110, -), CAediting_653693(100581123, -), CAediting_653694(100581204, -), CAediting_653695(100583161, -), CAediting_653696(100583175, -), CAediting_653697(100583192, -), CAediting_653698(100583196, -), CAediting_653699(100583199, -), CAediting_653700(100583239, -), CAediting_653701(100583245, -), CAediting_653702(100583307, -), CAediting_653703(100583309, -), CAediting_653704(100583310, -), CAediting_653705(100583364, -), CAediting_653706(100583386, -), CAediting_653707(100586058, -), CAediting_653708(100586059, -), CAediting_653709(100614692, -), CAediting_653710(100614755, -), CAediting_653711(100624930, -), CAediting_653712(100624940, -), CAediting_653713(100624942, -), CAediting_653714(100624956, -), CAediting_653715(100625010, -), CAediting_653716(100625038, -), CAediting_653717(100625061, -), CAediting_653718(100625078, -), CAediting_653719(100625083, -), CAediting_653720(100625084, -), CAediting_653721(100625104, -), CAediting_653722(100625970, -), CAediting_653723(100625984, -), CAediting_653724(100626010, -), CAediting_653725(100627270, -), CAediting_653726(100627292, -), CAediting_653727(100627295, -), CAediting_653728(100627313, -), CAediting_653729(100627577, -), CAediting_653730(100627584, -), CAediting_653731(100627618, -), CAediting_653732(100627620, -), CAediting_653733(100627676, -), CAediting_653734(100627725, -), CAediting_653735(100633215, -), CAediting_653736(100633493, -), CAediting_653737(100633500, -), CAediting_653738(100633520, -), CAediting_653739(100633568, -), CAediting_653740(100633601, -), CAediting_653741(100633618, -), CAediting_653742(100633642, -), CAediting_653743(100634529, -), CAediting_653744(100634853, -), CAediting_653745(100635513, -), CAediting_653746(100638070, -), CAediting_653747(100638145, -), CAediting_653748(100638146, -), CAediting_653749(100640239, -), CAediting_653750(100641292, -), CAediting_653751(100641316, -), CAediting_653752(100641319, -), CAediting_653753(100641349, -), CAediting_653754(100641374, -), CAediting_653755(100641399, -), CAediting_653756(100641457, -), CAediting_653757(100643066, -), CAediting_653758(100644832, -), CAediting_653759(100644839, -), CAediting_653760(100644889, -), CAediting_653761(100644900, -),

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RNA editing positional annotations for SNX31 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_653684	chr8_100578789_-	intronic
CAediting_653685	chr8_100578814_-	intronic
CAediting_653686	chr8_100578860_-	intronic
CAediting_653687	chr8_100578866_-	intronic
CAediting_653688	chr8_100578886_-	intronic
CAediting_653689	chr8_100579955_-	intronic
CAediting_653690	chr8_100580031_-	intronic
CAediting_653691	chr8_100580052_-	intronic
CAediting_653692	chr8_100580110_-	intronic
CAediting_653693	chr8_100581123_-	intronic
CAediting_653694	chr8_100581204_-	intronic
CAediting_653695	chr8_100583161_-	ncRNA_intronic
CAediting_653696	chr8_100583175_-	ncRNA_intronic
CAediting_653697	chr8_100583192_-	ncRNA_intronic
CAediting_653698	chr8_100583196_-	ncRNA_intronic
CAediting_653699	chr8_100583199_-	ncRNA_intronic
CAediting_653700	chr8_100583239_-	ncRNA_intronic
CAediting_653701	chr8_100583245_-	ncRNA_intronic
CAediting_653702	chr8_100583307_-	ncRNA_intronic
CAediting_653703	chr8_100583309_-	ncRNA_intronic
CAediting_653704	chr8_100583310_-	ncRNA_intronic
CAediting_653705	chr8_100583364_-	ncRNA_intronic
CAediting_653706	chr8_100583386_-	ncRNA_intronic
CAediting_653707	chr8_100586058_-	ncRNA_intronic
CAediting_653708	chr8_100586059_-	ncRNA_intronic
CAediting_653709	chr8_100614692_-	intronic
CAediting_653710	chr8_100614755_-	intronic
CAediting_653711	chr8_100624930_-	intronic
CAediting_653712	chr8_100624940_-	intronic
CAediting_653713	chr8_100624942_-	intronic
CAediting_653714	chr8_100624956_-	intronic
CAediting_653715	chr8_100625010_-	intronic
CAediting_653716	chr8_100625038_-	intronic
CAediting_653717	chr8_100625061_-	intronic
CAediting_653718	chr8_100625078_-	intronic
CAediting_653719	chr8_100625083_-	intronic
CAediting_653720	chr8_100625084_-	intronic
CAediting_653721	chr8_100625104_-	intronic
CAediting_653722	chr8_100625970_-	intronic
CAediting_653723	chr8_100625984_-	intronic
CAediting_653724	chr8_100626010_-	intronic
CAediting_653725	chr8_100627270_-	intronic
CAediting_653726	chr8_100627292_-	intronic
CAediting_653727	chr8_100627295_-	intronic
CAediting_653728	chr8_100627313_-	intronic
CAediting_653729	chr8_100627577_-	intronic
CAediting_653730	chr8_100627584_-	intronic
CAediting_653731	chr8_100627618_-	intronic
CAediting_653732	chr8_100627620_-	intronic
CAediting_653733	chr8_100627676_-	intronic
CAediting_653734	chr8_100627725_-	intronic
CAediting_653735	chr8_100633215_-	intronic
CAediting_653736	chr8_100633493_-	intronic
CAediting_653737	chr8_100633500_-	intronic
CAediting_653738	chr8_100633520_-	intronic
CAediting_653739	chr8_100633568_-	intronic
CAediting_653740	chr8_100633601_-	intronic
CAediting_653741	chr8_100633618_-	intronic
CAediting_653742	chr8_100633642_-	intronic
CAediting_653743	chr8_100634529_-	intronic
CAediting_653744	chr8_100634853_-	intronic
CAediting_653745	chr8_100635513_-	intronic
CAediting_653746	chr8_100638070_-	intronic
CAediting_653747	chr8_100638145_-	intronic
CAediting_653748	chr8_100638146_-	intronic
CAediting_653749	chr8_100640239_-	intronic
CAediting_653750	chr8_100641292_-	intronic
CAediting_653751	chr8_100641316_-	intronic
CAediting_653752	chr8_100641319_-	intronic
CAediting_653753	chr8_100641349_-	intronic
CAediting_653754	chr8_100641374_-	intronic
CAediting_653755	chr8_100641399_-	intronic
CAediting_653756	chr8_100641457_-	intronic
CAediting_653757	chr8_100643066_-	intronic
CAediting_653758	chr8_100644832_-	intronic
CAediting_653759	chr8_100644839_-	intronic
CAediting_653760	chr8_100644889_-	intronic
CAediting_653761	chr8_100644900_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_653684	chr8_100578789_-	SINE	Alu	AluSz
CAediting_653685	chr8_100578814_-	SINE	Alu	AluSz
CAediting_653686	chr8_100578860_-	SINE	Alu	AluSz
CAediting_653687	chr8_100578866_-	SINE	Alu	AluSz
CAediting_653688	chr8_100578886_-	SINE	Alu	AluSz
CAediting_653689	chr8_100579955_-	SINE	Alu	AluJb
CAediting_653690	chr8_100580031_-	SINE	Alu	AluJb
CAediting_653691	chr8_100580052_-	SINE	Alu	AluJb
CAediting_653692	chr8_100580110_-	SINE	Alu	AluJb
CAediting_653693	chr8_100581123_-	SINE	Alu	AluJo
CAediting_653694	chr8_100581204_-	SINE	Alu	AluJo
CAediting_653695	chr8_100583161_-	SINE	Alu	AluSx1
CAediting_653696	chr8_100583175_-	SINE	Alu	AluSx1
CAediting_653697	chr8_100583192_-	SINE	Alu	AluSx1
CAediting_653698	chr8_100583196_-	SINE	Alu	AluSx1
CAediting_653699	chr8_100583199_-	SINE	Alu	AluSx1
CAediting_653700	chr8_100583239_-	SINE	Alu	AluSx1
CAediting_653701	chr8_100583245_-	SINE	Alu	AluSx1
CAediting_653702	chr8_100583307_-	SINE	Alu	AluSx1
CAediting_653703	chr8_100583309_-	SINE	Alu	AluSx1
CAediting_653704	chr8_100583310_-	SINE	Alu	AluSx1
CAediting_653705	chr8_100583364_-	SINE	Alu	AluSx1
CAediting_653706	chr8_100583386_-	SINE	Alu	AluSx1
CAediting_653707	chr8_100586058_-	SINE	Alu	AluSx1
CAediting_653708	chr8_100586059_-	SINE	Alu	AluSx1
CAediting_653709	chr8_100614692_-	SINE	Alu	AluSq2
CAediting_653710	chr8_100614755_-	SINE	Alu	AluSq2
CAediting_653711	chr8_100624930_-	SINE	Alu	AluJr
CAediting_653712	chr8_100624940_-	SINE	Alu	AluJr
CAediting_653713	chr8_100624942_-	SINE	Alu	AluJr
CAediting_653714	chr8_100624956_-	SINE	Alu	AluJr
CAediting_653715	chr8_100625010_-	SINE	Alu	AluJr
CAediting_653716	chr8_100625038_-	SINE	Alu	AluJr
CAediting_653717	chr8_100625061_-	SINE	Alu	AluJr
CAediting_653718	chr8_100625078_-	SINE	Alu	AluJr
CAediting_653719	chr8_100625083_-	SINE	Alu	AluJr
CAediting_653720	chr8_100625084_-	SINE	Alu	AluJr
CAediting_653721	chr8_100625104_-	SINE	Alu	AluJr
CAediting_653722	chr8_100625970_-	SINE	Alu	AluSp
CAediting_653723	chr8_100625984_-	SINE	Alu	AluSp
CAediting_653724	chr8_100626010_-	SINE	Alu	AluSp
CAediting_653725	chr8_100627270_-	SINE	Alu	AluSq4
CAediting_653726	chr8_100627292_-	SINE	Alu	AluSq4
CAediting_653727	chr8_100627295_-	SINE	Alu	AluSq4
CAediting_653728	chr8_100627313_-	SINE	Alu	AluSq4
CAediting_653729	chr8_100627577_-	SINE	Alu	AluSx
CAediting_653730	chr8_100627584_-	SINE	Alu	AluSx
CAediting_653731	chr8_100627618_-	SINE	Alu	AluSx
CAediting_653732	chr8_100627620_-	SINE	Alu	AluSx
CAediting_653733	chr8_100627676_-	SINE	Alu	AluSx
CAediting_653734	chr8_100627725_-	SINE	Alu	AluSx
CAediting_653735	chr8_100633215_-	SINE	Alu	AluJr
CAediting_653736	chr8_100633493_-	SINE	Alu	AluSq2
CAediting_653737	chr8_100633500_-	SINE	Alu	AluSq2
CAediting_653738	chr8_100633520_-	SINE	Alu	AluSq2
CAediting_653739	chr8_100633568_-	SINE	Alu	AluSq2
CAediting_653740	chr8_100633601_-	SINE	Alu	AluSq2
CAediting_653741	chr8_100633618_-	SINE	Alu	AluSq2
CAediting_653742	chr8_100633642_-	SINE	Alu	AluSq2
CAediting_653743	chr8_100634529_-	SINE	Alu	AluSz
CAediting_653744	chr8_100634853_-	SINE	Alu	AluJr
CAediting_653745	chr8_100635513_-	SINE	Alu	AluJr
CAediting_653746	chr8_100638070_-	SINE	Alu	AluJo
CAediting_653747	chr8_100638145_-	SINE	Alu	AluJo
CAediting_653748	chr8_100638146_-	SINE	Alu	AluJo
CAediting_653749	chr8_100640239_-	SINE	Alu	AluSp
CAediting_653750	chr8_100641292_-	SINE	Alu	AluJo
CAediting_653751	chr8_100641316_-	SINE	Alu	AluJo
CAediting_653752	chr8_100641319_-	SINE	Alu	AluJo
CAediting_653753	chr8_100641349_-	SINE	Alu	AluJo
CAediting_653754	chr8_100641374_-	SINE	Alu	AluJo
CAediting_653755	chr8_100641399_-	SINE	Alu	AluJo
CAediting_653756	chr8_100641457_-	SINE	Alu	AluJo
CAediting_653757	chr8_100643066_-	SINE	Alu	AluSx1
CAediting_653758	chr8_100644832_-	SINE	Alu	AluSz6
CAediting_653759	chr8_100644839_-	SINE	Alu	AluSz6
CAediting_653760	chr8_100644889_-	SINE	Alu	AluSz6
CAediting_653761	chr8_100644900_-	SINE	Alu	AluSz6

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RNA A-to-I editing events in the alternative splicing sites for SNX31

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000174226.7.SNX31.

Correlation between RNA A-to-I editing and PSI for ENSG00000174226.7.SNX31.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SNX31

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for SNX31

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for SNX31

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1351755	chr19_40282625_-	ENSG00000174226.7	ENST00000518342	hsa-miR-641	100573590	100573597	8mer-1a	100573590	100573615	158	-16.84

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for SNX31

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for SNX31

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for SNX31

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for SNX31

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for SNX31

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for SNX31

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
SNX31	C0036341	Schizophrenia	1	PSYGENET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene