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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: GBP6 (CAeditome ID:163351) |
Gene summary for GBP6 |
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Gene information | Gene symbol | GBP6 | Gene ID | 163351 |
Gene name | guanylate binding protein family member 6 | |
Synonyms | - | |
Cytomap | 1p22.2 | |
Type of gene | protein-coding | |
Description | guanylate-binding protein 6GBP-6GTP-binding protein 6guanine nucleotide-binding protein 6 | |
Modification date | 20210518 | |
UniProtAcc | Q6ZN66 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for GBP6 |
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CAediting_78698(89374987, +), CAediting_78699(89375005, +), CAediting_78700(89375018, +), CAediting_78701(89375052, +), CAediting_78702(89375053, +), CAediting_78703(89375058, +), CAediting_78704(89375121, +), CAediting_78705(89375123, +), CAediting_78706(89375144, +), CAediting_78707(89376583, +), CAediting_78708(89376622, +), CAediting_78709(89376638, +), CAediting_78710(89385577, +), CAediting_78711(89385587, +), CAediting_78712(89385589, +), CAediting_78713(89385603, +), CAediting_78714(89385608, +), CAediting_78715(89385614, +), CAediting_78716(89385633, +), CAediting_78717(89385634, +), CAediting_78718(89385651, +), CAediting_78719(89385659, +), CAediting_78720(89385662, +), CAediting_78721(89385680, +), CAediting_78722(89385682, +), CAediting_78723(89385694, +), CAediting_78724(89385698, +), CAediting_78725(89385699, +), CAediting_78726(89385713, +), CAediting_78727(89385716, +), CAediting_78728(89385730, +), CAediting_78729(89385742, +), CAediting_78730(89385767, +), CAediting_78731(89385768, +), CAediting_78732(89385772, +), CAediting_78733(89385809, +), CAediting_78734(89385813, +), |
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RNA editing positional annotations for GBP6 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_78698 | chr1_89374987_+ | intronic |
CAediting_78699 | chr1_89375005_+ | intronic |
CAediting_78700 | chr1_89375018_+ | intronic |
CAediting_78701 | chr1_89375052_+ | intronic |
CAediting_78702 | chr1_89375053_+ | intronic |
CAediting_78703 | chr1_89375058_+ | intronic |
CAediting_78704 | chr1_89375121_+ | intronic |
CAediting_78705 | chr1_89375123_+ | intronic |
CAediting_78706 | chr1_89375144_+ | intronic |
CAediting_78707 | chr1_89376583_+ | intronic |
CAediting_78708 | chr1_89376622_+ | intronic |
CAediting_78709 | chr1_89376638_+ | intronic |
CAediting_78710 | chr1_89385577_+ | UTR3 |
CAediting_78711 | chr1_89385587_+ | UTR3 |
CAediting_78712 | chr1_89385589_+ | UTR3 |
CAediting_78713 | chr1_89385603_+ | UTR3 |
CAediting_78714 | chr1_89385608_+ | UTR3 |
CAediting_78715 | chr1_89385614_+ | UTR3 |
CAediting_78716 | chr1_89385633_+ | UTR3 |
CAediting_78717 | chr1_89385634_+ | UTR3 |
CAediting_78718 | chr1_89385651_+ | UTR3 |
CAediting_78719 | chr1_89385659_+ | UTR3 |
CAediting_78720 | chr1_89385662_+ | UTR3 |
CAediting_78721 | chr1_89385680_+ | UTR3 |
CAediting_78722 | chr1_89385682_+ | UTR3 |
CAediting_78723 | chr1_89385694_+ | UTR3 |
CAediting_78724 | chr1_89385698_+ | UTR3 |
CAediting_78725 | chr1_89385699_+ | UTR3 |
CAediting_78726 | chr1_89385713_+ | UTR3 |
CAediting_78727 | chr1_89385716_+ | UTR3 |
CAediting_78728 | chr1_89385730_+ | UTR3 |
CAediting_78729 | chr1_89385742_+ | UTR3 |
CAediting_78730 | chr1_89385767_+ | UTR3 |
CAediting_78731 | chr1_89385768_+ | UTR3 |
CAediting_78732 | chr1_89385772_+ | UTR3 |
CAediting_78733 | chr1_89385809_+ | UTR3 |
CAediting_78734 | chr1_89385813_+ | UTR3 |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_78698 | chr1_89374987_+ | LINE | L1 | L1PA12 |
CAediting_78699 | chr1_89375005_+ | LINE | L1 | L1PA12 |
CAediting_78700 | chr1_89375018_+ | LINE | L1 | L1PA12 |
CAediting_78701 | chr1_89375052_+ | LINE | L1 | L1PA12 |
CAediting_78702 | chr1_89375053_+ | LINE | L1 | L1PA12 |
CAediting_78703 | chr1_89375058_+ | LINE | L1 | L1PA12 |
CAediting_78704 | chr1_89375121_+ | LINE | L1 | L1PA12 |
CAediting_78705 | chr1_89375123_+ | LINE | L1 | L1PA12 |
CAediting_78706 | chr1_89375144_+ | LINE | L1 | L1PA12 |
CAediting_78707 | chr1_89376583_+ | LINE | L1 | L1MA8 |
CAediting_78708 | chr1_89376622_+ | LINE | L1 | L1MA8 |
CAediting_78709 | chr1_89376638_+ | LINE | L1 | L1MA8 |
CAediting_78710 | chr1_89385577_+ | SINE | Alu | AluSz |
CAediting_78711 | chr1_89385587_+ | SINE | Alu | AluSz |
CAediting_78712 | chr1_89385589_+ | SINE | Alu | AluSz |
CAediting_78713 | chr1_89385603_+ | SINE | Alu | AluSz |
CAediting_78714 | chr1_89385608_+ | SINE | Alu | AluSz |
CAediting_78715 | chr1_89385614_+ | SINE | Alu | AluSz |
CAediting_78716 | chr1_89385633_+ | SINE | Alu | AluSz |
CAediting_78717 | chr1_89385634_+ | SINE | Alu | AluSz |
CAediting_78718 | chr1_89385651_+ | SINE | Alu | AluSz |
CAediting_78719 | chr1_89385659_+ | SINE | Alu | AluSz |
CAediting_78720 | chr1_89385662_+ | SINE | Alu | AluSz |
CAediting_78721 | chr1_89385680_+ | SINE | Alu | AluSz |
CAediting_78722 | chr1_89385682_+ | SINE | Alu | AluSz |
CAediting_78723 | chr1_89385694_+ | SINE | Alu | AluSz |
CAediting_78724 | chr1_89385698_+ | SINE | Alu | AluSz |
CAediting_78725 | chr1_89385699_+ | SINE | Alu | AluSz |
CAediting_78726 | chr1_89385713_+ | SINE | Alu | AluSz |
CAediting_78727 | chr1_89385716_+ | SINE | Alu | AluSz |
CAediting_78728 | chr1_89385730_+ | SINE | Alu | AluSz |
CAediting_78729 | chr1_89385742_+ | SINE | Alu | AluSz |
CAediting_78730 | chr1_89385767_+ | SINE | Alu | AluSz |
CAediting_78731 | chr1_89385768_+ | SINE | Alu | AluSz |
CAediting_78732 | chr1_89385772_+ | SINE | Alu | AluSz |
CAediting_78733 | chr1_89385809_+ | SINE | Alu | AluSz |
CAediting_78734 | chr1_89385813_+ | SINE | Alu | AluSz |
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RNA A-to-I editing events in the alternative splicing sites for GBP6 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for GBP6 |
![]() * The grey color means N/A. |
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HNSC.CAediting_78719.ENSG00000183347.GBP6.png ![]() |
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Protein coding region RNA A-to-I editings for GBP6 |
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The effects of the RNA editing to the miRNA binding sites for GBP6 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for GBP6 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000370456.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_78710 | ENST00000370456.4 | chr1_89385577_+ | -867.90 | -865.10 | -896.60 |
CAediting_78711 | ENST00000370456.4 | chr1_89385587_+ | -868.80 | -865.10 | -896.60 |
CAediting_78712 | ENST00000370456.4 | chr1_89385589_+ | -866.10 | -865.10 | -896.60 |
CAediting_78713 | ENST00000370456.4 | chr1_89385603_+ | -864.40 | -865.10 | -896.60 |
CAediting_78714 | ENST00000370456.4 | chr1_89385608_+ | -868.90 | -865.10 | -896.60 |
CAediting_78715 | ENST00000370456.4 | chr1_89385614_+ | -867.20 | -865.10 | -896.60 |
CAediting_78716 | ENST00000370456.4 | chr1_89385633_+ | -865.90 | -865.10 | -896.60 |
CAediting_78717 | ENST00000370456.4 | chr1_89385634_+ | -867.70 | -865.10 | -896.60 |
CAediting_78718 | ENST00000370456.4 | chr1_89385651_+ | -867.00 | -865.10 | -896.60 |
CAediting_78719 | ENST00000370456.4 | chr1_89385659_+ | -865.70 | -865.10 | -896.60 |
CAediting_78720 | ENST00000370456.4 | chr1_89385662_+ | -867.10 | -865.10 | -896.60 |
CAediting_78721 | ENST00000370456.4 | chr1_89385680_+ | -865.90 | -865.10 | -896.60 |
CAediting_78722 | ENST00000370456.4 | chr1_89385682_+ | -865.10 | -865.10 | -896.60 |
CAediting_78723 | ENST00000370456.4 | chr1_89385694_+ | -864.40 | -865.10 | -896.60 |
CAediting_78724 | ENST00000370456.4 | chr1_89385698_+ | -866.60 | -865.10 | -896.60 |
CAediting_78725 | ENST00000370456.4 | chr1_89385699_+ | -866.60 | -865.10 | -896.60 |
CAediting_78726 | ENST00000370456.4 | chr1_89385713_+ | -867.40 | -865.10 | -896.60 |
CAediting_78727 | ENST00000370456.4 | chr1_89385716_+ | -867.90 | -865.10 | -896.60 |
CAediting_78728 | ENST00000370456.4 | chr1_89385730_+ | -866.00 | -865.10 | -896.60 |
CAediting_78729 | ENST00000370456.4 | chr1_89385742_+ | -865.80 | -865.10 | -896.60 |
CAediting_78730 | ENST00000370456.4 | chr1_89385767_+ | -865.10 | -865.10 | -896.60 |
CAediting_78731 | ENST00000370456.4 | chr1_89385768_+ | -865.10 | -865.10 | -896.60 |
CAediting_78732 | ENST00000370456.4 | chr1_89385772_+ | -867.30 | -865.10 | -896.60 |
CAediting_78733 | ENST00000370456.4 | chr1_89385809_+ | -866.90 | -865.10 | -896.60 |
CAediting_78734 | ENST00000370456.4 | chr1_89385813_+ | -865.90 | -865.10 | -896.60 |
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Relation with ADAR for GBP6 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
LUSC | CAediting_78711 | chr1_89385587_+ | . | . | . | . | 0.0404882237914614 | 0.155488869715535 |
HNSC | CAediting_78711 | chr1_89385587_+ | 0.00341318807283666 | 0.185988454018284 | 0.0219942403325721 | 0.145995120383638 | . | . |
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Relation with cancer stages for GBP6 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
LUSC | pathologic_stage | CAediting_78713 | chr1_89385603_+ | 0.0185434360004288 | -0.303161226912028 |
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Relation with survival for GBP6 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for GBP6 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for GBP6 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |