|
Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples | |
The effects of the RNA editing to the stability of the RNA structures | |
Editing gene: SLFN5 (CAeditome ID:162394) |
Gene summary for SLFN5 |
Gene summary |
Gene information | Gene symbol | SLFN5 | Gene ID | 162394 |
Gene name | schlafen family member 5 | |
Synonyms | - | |
Cytomap | 17q12 | |
Type of gene | protein-coding | |
Description | schlafen family member 5 | |
Modification date | 20210531 | |
UniProtAcc | Q08AF3 | |
Context |
Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
Gene | GO ID | GO term | PubMed ID |
Top |
RNA A-to-I events for SLFN5 |
RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure. |
RNA editing frequencies across 33 cancers of gene: ENSG00000166750.8 |
RNA A-to-I editing events in Cancer. |
CAediting_1183281(35244671, +), CAediting_1183282(35244822, +), CAediting_1183283(35244823, +), CAediting_1183284(35261406, +), CAediting_1183285(35261415, +), CAediting_1183286(35261453, +), CAediting_1183287(35261459, +), CAediting_1183288(35261483, +), CAediting_1183289(35261487, +), CAediting_1183290(35261578, +), CAediting_1183291(35261589, +), CAediting_1183292(35261590, +), CAediting_1183293(35261621, +), CAediting_1183294(35261629, +), CAediting_1183295(35261631, +), CAediting_1183296(35261775, +), CAediting_1183297(35261776, +), CAediting_1183298(35261779, +), CAediting_1183299(35261811, +), CAediting_1183300(35261853, +), CAediting_1183301(35261862, +), CAediting_1183302(35261868, +), CAediting_1183303(35261879, +), CAediting_1183304(35261917, +), CAediting_1183305(35261940, +), CAediting_1183306(35261941, +), CAediting_1183307(35261953, +), CAediting_1183308(35261959, +), CAediting_1183309(35262107, +), CAediting_1183310(35262109, +), CAediting_1183311(35262125, +), CAediting_1183312(35262126, +), CAediting_1183313(35262170, +), CAediting_1183314(35262193, +), CAediting_1183315(35262202, +), CAediting_1183316(35262223, +), CAediting_1183317(35262233, +), CAediting_1183318(35262282, +), CAediting_1183319(35262286, +), CAediting_1183320(35262301, +), CAediting_1183321(35262329, +), CAediting_1183322(35262601, +), CAediting_1183323(35262607, +), CAediting_1183324(35262608, +), CAediting_1183325(35262662, +), CAediting_1183326(35262667, +), CAediting_1183327(35262672, +), CAediting_1183328(35262708, +), CAediting_1183329(35262712, +), CAediting_1183330(35262714, +), CAediting_1183331(35262717, +), CAediting_1183332(35262737, +), CAediting_1183333(35262743, +), CAediting_1183334(35262757, +), CAediting_1183335(35262760, +), CAediting_1183336(35262761, +), CAediting_1183337(35262776, +), CAediting_1183338(35262779, +), CAediting_1183339(35262784, +), CAediting_1183340(35262796, +), CAediting_1183341(35262824, +), CAediting_1183342(35262839, +), CAediting_1183343(35262851, +), CAediting_1183344(35263150, +), CAediting_1183345(35263154, +), CAediting_1183346(35263162, +), CAediting_1183347(35263195, +), CAediting_1183348(35263200, +), CAediting_1183349(35263210, +), CAediting_1183350(35263211, +), CAediting_1183351(35263230, +), CAediting_1183352(35263231, +), CAediting_1183353(35263235, +), CAediting_1183354(35263248, +), CAediting_1183355(35263276, +), CAediting_1183356(35263280, +), CAediting_1183357(35263296, +), CAediting_1183358(35263305, +), CAediting_1183359(35263328, +), CAediting_1183360(35263340, +), CAediting_1183361(35263365, +), CAediting_1183362(35263366, +), CAediting_1183363(35263405, +), CAediting_1183364(35263407, +), CAediting_1183365(35263411, +), CAediting_1183366(35263421, +), CAediting_1183367(35263590, +), CAediting_1183368(35263603, +), CAediting_1183369(35263613, +), CAediting_1183370(35263624, +), CAediting_1183371(35263627, +), CAediting_1183372(35263637, +), CAediting_1183373(35263646, +), CAediting_1183374(35263647, +), CAediting_1183375(35263658, +), CAediting_1183376(35263661, +), CAediting_1183377(35263662, +), CAediting_1183378(35263663, +), CAediting_1183379(35263664, +), CAediting_1183380(35263665, +), CAediting_1183381(35263667, +), CAediting_1183382(35263669, +), CAediting_1183383(35263671, +), CAediting_1183384(35263672, +), CAediting_1183385(35263676, +), CAediting_1183386(35263680, +), CAediting_1183387(35263692, +), CAediting_1183388(35263694, +), CAediting_1183389(35263708, +), CAediting_1183390(35263719, +), CAediting_1183391(35263725, +), CAediting_1183392(35263729, +), CAediting_1183393(35263734, +), CAediting_1183394(35263735, +), CAediting_1183395(35263738, +), CAediting_1183396(35263744, +), CAediting_1183397(35263748, +), CAediting_1183398(35263751, +), CAediting_1183399(35263753, +), CAediting_1183400(35263755, +), CAediting_1183401(35263758, +), CAediting_1183402(35263773, +), CAediting_1183403(35263799, +), CAediting_1183404(35263800, +), CAediting_1183405(35267442, +), CAediting_1183406(35267450, +), CAediting_1183407(35267453, +), CAediting_1183408(35267458, +), CAediting_1183409(35267490, +), CAediting_1183410(35267565, +), CAediting_1183411(35267591, +), CAediting_1183412(35267626, +), CAediting_1183413(35267648, +), CAediting_1183414(35267702, +), CAediting_1183415(35268483, +), CAediting_1183416(35268484, +), CAediting_1183417(35268488, +), CAediting_1183418(35268507, +), CAediting_1183419(35268515, +), CAediting_1183420(35268570, +), CAediting_1183421(35268626, +), CAediting_1183422(35268649, +), CAediting_1183423(35271125, +), CAediting_1183424(35271153, +), CAediting_1183425(35271154, +), CAediting_1183426(35271155, +), CAediting_1183427(35271157, +), CAediting_1183428(35271774, +), CAediting_1183429(35271789, +), CAediting_1183430(35271791, +), CAediting_1183431(35271801, +), CAediting_1183432(35271946, +), CAediting_1183433(35271983, +), |
Top |
RNA editing positional annotations for SLFN5 using Annovar |
Protein coding RNA editing(s). |
CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
Gene structure information of RNA editing(s). |
CAeditome ID | Position | Variant type |
CAediting_1183281 | chr17_35244671_+ | intronic |
CAediting_1183282 | chr17_35244822_+ | intronic |
CAediting_1183283 | chr17_35244823_+ | intronic |
CAediting_1183284 | chr17_35261406_+ | intronic |
CAediting_1183285 | chr17_35261415_+ | intronic |
CAediting_1183286 | chr17_35261453_+ | intronic |
CAediting_1183287 | chr17_35261459_+ | intronic |
CAediting_1183288 | chr17_35261483_+ | intronic |
CAediting_1183289 | chr17_35261487_+ | intronic |
CAediting_1183290 | chr17_35261578_+ | intronic |
CAediting_1183291 | chr17_35261589_+ | intronic |
CAediting_1183292 | chr17_35261590_+ | intronic |
CAediting_1183293 | chr17_35261621_+ | intronic |
CAediting_1183294 | chr17_35261629_+ | intronic |
CAediting_1183295 | chr17_35261631_+ | intronic |
CAediting_1183296 | chr17_35261775_+ | intronic |
CAediting_1183297 | chr17_35261776_+ | intronic |
CAediting_1183298 | chr17_35261779_+ | intronic |
CAediting_1183299 | chr17_35261811_+ | intronic |
CAediting_1183300 | chr17_35261853_+ | intronic |
CAediting_1183301 | chr17_35261862_+ | intronic |
CAediting_1183302 | chr17_35261868_+ | intronic |
CAediting_1183303 | chr17_35261879_+ | intronic |
CAediting_1183304 | chr17_35261917_+ | intronic |
CAediting_1183305 | chr17_35261940_+ | intronic |
CAediting_1183306 | chr17_35261941_+ | intronic |
CAediting_1183307 | chr17_35261953_+ | intronic |
CAediting_1183308 | chr17_35261959_+ | intronic |
CAediting_1183309 | chr17_35262107_+ | intronic |
CAediting_1183310 | chr17_35262109_+ | intronic |
CAediting_1183311 | chr17_35262125_+ | intronic |
CAediting_1183312 | chr17_35262126_+ | intronic |
CAediting_1183313 | chr17_35262170_+ | intronic |
CAediting_1183314 | chr17_35262193_+ | intronic |
CAediting_1183315 | chr17_35262202_+ | intronic |
CAediting_1183316 | chr17_35262223_+ | intronic |
CAediting_1183317 | chr17_35262233_+ | intronic |
CAediting_1183318 | chr17_35262282_+ | intronic |
CAediting_1183319 | chr17_35262286_+ | intronic |
CAediting_1183320 | chr17_35262301_+ | intronic |
CAediting_1183321 | chr17_35262329_+ | intronic |
CAediting_1183322 | chr17_35262601_+ | intronic |
CAediting_1183323 | chr17_35262607_+ | intronic |
CAediting_1183324 | chr17_35262608_+ | intronic |
CAediting_1183325 | chr17_35262662_+ | intronic |
CAediting_1183326 | chr17_35262667_+ | intronic |
CAediting_1183327 | chr17_35262672_+ | intronic |
CAediting_1183328 | chr17_35262708_+ | intronic |
CAediting_1183329 | chr17_35262712_+ | intronic |
CAediting_1183330 | chr17_35262714_+ | intronic |
CAediting_1183331 | chr17_35262717_+ | intronic |
CAediting_1183332 | chr17_35262737_+ | intronic |
CAediting_1183333 | chr17_35262743_+ | intronic |
CAediting_1183334 | chr17_35262757_+ | intronic |
CAediting_1183335 | chr17_35262760_+ | intronic |
CAediting_1183336 | chr17_35262761_+ | intronic |
CAediting_1183337 | chr17_35262776_+ | intronic |
CAediting_1183338 | chr17_35262779_+ | intronic |
CAediting_1183339 | chr17_35262784_+ | intronic |
CAediting_1183340 | chr17_35262796_+ | intronic |
CAediting_1183341 | chr17_35262824_+ | intronic |
CAediting_1183342 | chr17_35262839_+ | intronic |
CAediting_1183343 | chr17_35262851_+ | intronic |
CAediting_1183344 | chr17_35263150_+ | intronic |
CAediting_1183345 | chr17_35263154_+ | intronic |
CAediting_1183346 | chr17_35263162_+ | intronic |
CAediting_1183347 | chr17_35263195_+ | intronic |
CAediting_1183348 | chr17_35263200_+ | intronic |
CAediting_1183349 | chr17_35263210_+ | intronic |
CAediting_1183350 | chr17_35263211_+ | intronic |
CAediting_1183351 | chr17_35263230_+ | intronic |
CAediting_1183352 | chr17_35263231_+ | intronic |
CAediting_1183353 | chr17_35263235_+ | intronic |
CAediting_1183354 | chr17_35263248_+ | intronic |
CAediting_1183355 | chr17_35263276_+ | intronic |
CAediting_1183356 | chr17_35263280_+ | intronic |
CAediting_1183357 | chr17_35263296_+ | intronic |
CAediting_1183358 | chr17_35263305_+ | intronic |
CAediting_1183359 | chr17_35263328_+ | intronic |
CAediting_1183360 | chr17_35263340_+ | intronic |
CAediting_1183361 | chr17_35263365_+ | intronic |
CAediting_1183362 | chr17_35263366_+ | intronic |
CAediting_1183363 | chr17_35263405_+ | intronic |
CAediting_1183364 | chr17_35263407_+ | intronic |
CAediting_1183365 | chr17_35263411_+ | intronic |
CAediting_1183366 | chr17_35263421_+ | intronic |
CAediting_1183367 | chr17_35263590_+ | intronic |
CAediting_1183368 | chr17_35263603_+ | intronic |
CAediting_1183369 | chr17_35263613_+ | intronic |
CAediting_1183370 | chr17_35263624_+ | intronic |
CAediting_1183371 | chr17_35263627_+ | intronic |
CAediting_1183372 | chr17_35263637_+ | intronic |
CAediting_1183373 | chr17_35263646_+ | intronic |
CAediting_1183374 | chr17_35263647_+ | intronic |
CAediting_1183375 | chr17_35263658_+ | intronic |
CAediting_1183376 | chr17_35263661_+ | intronic |
CAediting_1183377 | chr17_35263662_+ | intronic |
CAediting_1183378 | chr17_35263663_+ | intronic |
CAediting_1183379 | chr17_35263664_+ | intronic |
CAediting_1183380 | chr17_35263665_+ | intronic |
CAediting_1183381 | chr17_35263667_+ | intronic |
CAediting_1183382 | chr17_35263669_+ | intronic |
CAediting_1183383 | chr17_35263671_+ | intronic |
CAediting_1183384 | chr17_35263672_+ | intronic |
CAediting_1183385 | chr17_35263676_+ | intronic |
CAediting_1183386 | chr17_35263680_+ | intronic |
CAediting_1183387 | chr17_35263692_+ | intronic |
CAediting_1183388 | chr17_35263694_+ | intronic |
CAediting_1183389 | chr17_35263708_+ | intronic |
CAediting_1183390 | chr17_35263719_+ | intronic |
CAediting_1183391 | chr17_35263725_+ | intronic |
CAediting_1183392 | chr17_35263729_+ | intronic |
CAediting_1183393 | chr17_35263734_+ | intronic |
CAediting_1183394 | chr17_35263735_+ | intronic |
CAediting_1183395 | chr17_35263738_+ | intronic |
CAediting_1183396 | chr17_35263744_+ | intronic |
CAediting_1183397 | chr17_35263748_+ | intronic |
CAediting_1183398 | chr17_35263751_+ | intronic |
CAediting_1183399 | chr17_35263753_+ | intronic |
CAediting_1183400 | chr17_35263755_+ | intronic |
CAediting_1183401 | chr17_35263758_+ | intronic |
CAediting_1183402 | chr17_35263773_+ | intronic |
CAediting_1183403 | chr17_35263799_+ | intronic |
CAediting_1183404 | chr17_35263800_+ | intronic |
CAediting_1183405 | chr17_35267442_+ | UTR3 |
CAediting_1183406 | chr17_35267450_+ | UTR3 |
CAediting_1183407 | chr17_35267453_+ | UTR3 |
CAediting_1183408 | chr17_35267458_+ | UTR3 |
CAediting_1183409 | chr17_35267490_+ | UTR3 |
CAediting_1183410 | chr17_35267565_+ | UTR3 |
CAediting_1183411 | chr17_35267591_+ | UTR3 |
CAediting_1183412 | chr17_35267626_+ | UTR3 |
CAediting_1183413 | chr17_35267648_+ | UTR3 |
CAediting_1183414 | chr17_35267702_+ | UTR3 |
CAediting_1183415 | chr17_35268483_+ | UTR3 |
CAediting_1183416 | chr17_35268484_+ | UTR3 |
CAediting_1183417 | chr17_35268488_+ | UTR3 |
CAediting_1183418 | chr17_35268507_+ | UTR3 |
CAediting_1183419 | chr17_35268515_+ | UTR3 |
CAediting_1183420 | chr17_35268570_+ | UTR3 |
CAediting_1183421 | chr17_35268626_+ | UTR3 |
CAediting_1183422 | chr17_35268649_+ | UTR3 |
CAediting_1183423 | chr17_35271125_+ | UTR3 |
CAediting_1183424 | chr17_35271153_+ | UTR3 |
CAediting_1183425 | chr17_35271154_+ | UTR3 |
CAediting_1183426 | chr17_35271155_+ | UTR3 |
CAediting_1183427 | chr17_35271157_+ | UTR3 |
CAediting_1183428 | chr17_35271774_+ | UTR3 |
CAediting_1183429 | chr17_35271789_+ | UTR3 |
CAediting_1183430 | chr17_35271791_+ | UTR3 |
CAediting_1183431 | chr17_35271801_+ | UTR3 |
CAediting_1183432 | chr17_35271946_+ | UTR3 |
CAediting_1183433 | chr17_35271983_+ | UTR3 |
Repat-regional RNA editing(s). |
CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1183281 | chr17_35244671_+ | SINE | Alu | AluSz |
CAediting_1183282 | chr17_35244822_+ | SINE | Alu | AluSz |
CAediting_1183283 | chr17_35244823_+ | SINE | Alu | AluSz |
CAediting_1183284 | chr17_35261406_+ | SINE | Alu | AluJo |
CAediting_1183285 | chr17_35261415_+ | SINE | Alu | AluJo |
CAediting_1183286 | chr17_35261453_+ | SINE | Alu | AluJo |
CAediting_1183287 | chr17_35261459_+ | SINE | Alu | AluJo |
CAediting_1183288 | chr17_35261483_+ | SINE | Alu | AluJo |
CAediting_1183289 | chr17_35261487_+ | SINE | Alu | AluJo |
CAediting_1183290 | chr17_35261578_+ | SINE | Alu | AluJo |
CAediting_1183291 | chr17_35261589_+ | SINE | Alu | AluJo |
CAediting_1183292 | chr17_35261590_+ | SINE | Alu | AluJo |
CAediting_1183293 | chr17_35261621_+ | SINE | Alu | AluJo |
CAediting_1183294 | chr17_35261629_+ | SINE | Alu | AluJo |
CAediting_1183295 | chr17_35261631_+ | SINE | Alu | AluJo |
CAediting_1183296 | chr17_35261775_+ | SINE | Alu | AluSq2 |
CAediting_1183297 | chr17_35261776_+ | SINE | Alu | AluSq2 |
CAediting_1183298 | chr17_35261779_+ | SINE | Alu | AluSq2 |
CAediting_1183299 | chr17_35261811_+ | SINE | Alu | AluSq2 |
CAediting_1183300 | chr17_35261853_+ | SINE | Alu | AluSq2 |
CAediting_1183301 | chr17_35261862_+ | SINE | Alu | AluSq2 |
CAediting_1183302 | chr17_35261868_+ | SINE | Alu | AluSq2 |
CAediting_1183303 | chr17_35261879_+ | SINE | Alu | AluSq2 |
CAediting_1183304 | chr17_35261917_+ | SINE | Alu | AluSq2 |
CAediting_1183305 | chr17_35261940_+ | SINE | Alu | AluSq2 |
CAediting_1183306 | chr17_35261941_+ | SINE | Alu | AluSq2 |
CAediting_1183307 | chr17_35261953_+ | SINE | Alu | AluSq2 |
CAediting_1183308 | chr17_35261959_+ | SINE | Alu | AluSq2 |
CAediting_1183309 | chr17_35262107_+ | SINE | Alu | AluSc8 |
CAediting_1183310 | chr17_35262109_+ | SINE | Alu | AluSc8 |
CAediting_1183311 | chr17_35262125_+ | SINE | Alu | AluSc8 |
CAediting_1183312 | chr17_35262126_+ | SINE | Alu | AluSc8 |
CAediting_1183313 | chr17_35262170_+ | SINE | Alu | AluSc8 |
CAediting_1183314 | chr17_35262193_+ | SINE | Alu | AluSc8 |
CAediting_1183315 | chr17_35262202_+ | SINE | Alu | AluSc8 |
CAediting_1183316 | chr17_35262223_+ | SINE | Alu | AluSc8 |
CAediting_1183317 | chr17_35262233_+ | SINE | Alu | AluSc8 |
CAediting_1183318 | chr17_35262282_+ | SINE | Alu | AluSc8 |
CAediting_1183319 | chr17_35262286_+ | SINE | Alu | AluSc8 |
CAediting_1183320 | chr17_35262301_+ | SINE | Alu | AluSc8 |
CAediting_1183321 | chr17_35262329_+ | SINE | Alu | AluSc8 |
CAediting_1183322 | chr17_35262601_+ | SINE | Alu | AluJb |
CAediting_1183323 | chr17_35262607_+ | SINE | Alu | AluJb |
CAediting_1183324 | chr17_35262608_+ | SINE | Alu | AluJb |
CAediting_1183325 | chr17_35262662_+ | SINE | Alu | AluJb |
CAediting_1183326 | chr17_35262667_+ | SINE | Alu | AluJb |
CAediting_1183327 | chr17_35262672_+ | SINE | Alu | AluJb |
CAediting_1183328 | chr17_35262708_+ | SINE | Alu | AluJb |
CAediting_1183329 | chr17_35262712_+ | SINE | Alu | AluJb |
CAediting_1183330 | chr17_35262714_+ | SINE | Alu | AluJb |
CAediting_1183331 | chr17_35262717_+ | SINE | Alu | AluJb |
CAediting_1183332 | chr17_35262737_+ | SINE | Alu | AluJb |
CAediting_1183333 | chr17_35262743_+ | SINE | Alu | AluJb |
CAediting_1183334 | chr17_35262757_+ | SINE | Alu | AluJb |
CAediting_1183335 | chr17_35262760_+ | SINE | Alu | AluJb |
CAediting_1183336 | chr17_35262761_+ | SINE | Alu | AluJb |
CAediting_1183337 | chr17_35262776_+ | SINE | Alu | AluJb |
CAediting_1183338 | chr17_35262779_+ | SINE | Alu | AluJb |
CAediting_1183339 | chr17_35262784_+ | SINE | Alu | AluJb |
CAediting_1183340 | chr17_35262796_+ | SINE | Alu | AluJb |
CAediting_1183341 | chr17_35262824_+ | SINE | Alu | AluJb |
CAediting_1183342 | chr17_35262839_+ | SINE | Alu | AluJb |
CAediting_1183343 | chr17_35262851_+ | SINE | Alu | AluJb |
CAediting_1183344 | chr17_35263150_+ | SINE | Alu | AluSz6 |
CAediting_1183345 | chr17_35263154_+ | SINE | Alu | AluSz6 |
CAediting_1183346 | chr17_35263162_+ | SINE | Alu | AluSz6 |
CAediting_1183347 | chr17_35263195_+ | SINE | Alu | AluSz6 |
CAediting_1183348 | chr17_35263200_+ | SINE | Alu | AluSz6 |
CAediting_1183349 | chr17_35263210_+ | SINE | Alu | AluSz6 |
CAediting_1183350 | chr17_35263211_+ | SINE | Alu | AluSz6 |
CAediting_1183351 | chr17_35263230_+ | SINE | Alu | AluSz6 |
CAediting_1183352 | chr17_35263231_+ | SINE | Alu | AluSz6 |
CAediting_1183353 | chr17_35263235_+ | SINE | Alu | AluSz6 |
CAediting_1183354 | chr17_35263248_+ | SINE | Alu | AluSz6 |
CAediting_1183355 | chr17_35263276_+ | SINE | Alu | AluSz6 |
CAediting_1183356 | chr17_35263280_+ | SINE | Alu | AluSz6 |
CAediting_1183357 | chr17_35263296_+ | SINE | Alu | AluSz6 |
CAediting_1183358 | chr17_35263305_+ | SINE | Alu | AluSz6 |
CAediting_1183359 | chr17_35263328_+ | SINE | Alu | AluSz6 |
CAediting_1183360 | chr17_35263340_+ | SINE | Alu | AluSz6 |
CAediting_1183361 | chr17_35263365_+ | SINE | Alu | AluSz6 |
CAediting_1183362 | chr17_35263366_+ | SINE | Alu | AluSz6 |
CAediting_1183363 | chr17_35263405_+ | SINE | Alu | AluSz6 |
CAediting_1183364 | chr17_35263407_+ | SINE | Alu | AluSz6 |
CAediting_1183365 | chr17_35263411_+ | SINE | Alu | AluSz6 |
CAediting_1183366 | chr17_35263421_+ | SINE | Alu | AluSz6 |
CAediting_1183367 | chr17_35263590_+ | SINE | Alu | AluSz |
CAediting_1183368 | chr17_35263603_+ | SINE | Alu | AluSz |
CAediting_1183369 | chr17_35263613_+ | SINE | Alu | AluSz |
CAediting_1183370 | chr17_35263624_+ | SINE | Alu | AluSz |
CAediting_1183371 | chr17_35263627_+ | SINE | Alu | AluSz |
CAediting_1183372 | chr17_35263637_+ | SINE | Alu | AluSz |
CAediting_1183373 | chr17_35263646_+ | SINE | Alu | AluSz |
CAediting_1183374 | chr17_35263647_+ | SINE | Alu | AluSz |
CAediting_1183375 | chr17_35263658_+ | SINE | Alu | AluSz |
CAediting_1183376 | chr17_35263661_+ | SINE | Alu | AluSz |
CAediting_1183377 | chr17_35263662_+ | SINE | Alu | AluSz |
CAediting_1183378 | chr17_35263663_+ | SINE | Alu | AluSz |
CAediting_1183379 | chr17_35263664_+ | SINE | Alu | AluSz |
CAediting_1183380 | chr17_35263665_+ | SINE | Alu | AluSz |
CAediting_1183381 | chr17_35263667_+ | SINE | Alu | AluSz |
CAediting_1183382 | chr17_35263669_+ | SINE | Alu | AluSz |
CAediting_1183383 | chr17_35263671_+ | SINE | Alu | AluSz |
CAediting_1183384 | chr17_35263672_+ | SINE | Alu | AluSz |
CAediting_1183385 | chr17_35263676_+ | SINE | Alu | AluSz |
CAediting_1183386 | chr17_35263680_+ | SINE | Alu | AluSz |
CAediting_1183387 | chr17_35263692_+ | SINE | Alu | AluSz |
CAediting_1183388 | chr17_35263694_+ | SINE | Alu | AluSz |
CAediting_1183389 | chr17_35263708_+ | SINE | Alu | AluSz |
CAediting_1183390 | chr17_35263719_+ | SINE | Alu | AluSz |
CAediting_1183391 | chr17_35263725_+ | SINE | Alu | AluSz |
CAediting_1183392 | chr17_35263729_+ | SINE | Alu | AluSz |
CAediting_1183393 | chr17_35263734_+ | SINE | Alu | AluSz |
CAediting_1183394 | chr17_35263735_+ | SINE | Alu | AluSz |
CAediting_1183395 | chr17_35263738_+ | SINE | Alu | AluSz |
CAediting_1183396 | chr17_35263744_+ | SINE | Alu | AluSz |
CAediting_1183397 | chr17_35263748_+ | SINE | Alu | AluSz |
CAediting_1183398 | chr17_35263751_+ | SINE | Alu | AluSz |
CAediting_1183399 | chr17_35263753_+ | SINE | Alu | AluSz |
CAediting_1183400 | chr17_35263755_+ | SINE | Alu | AluSz |
CAediting_1183401 | chr17_35263758_+ | SINE | Alu | AluSz |
CAediting_1183402 | chr17_35263773_+ | SINE | Alu | AluSz |
CAediting_1183403 | chr17_35263799_+ | SINE | Alu | AluSz |
CAediting_1183404 | chr17_35263800_+ | SINE | Alu | AluSz |
CAediting_1183405 | chr17_35267442_+ | SINE | Alu | AluJr4 |
CAediting_1183406 | chr17_35267450_+ | SINE | Alu | AluJr4 |
CAediting_1183407 | chr17_35267453_+ | SINE | Alu | AluJr4 |
CAediting_1183408 | chr17_35267458_+ | SINE | Alu | AluJr4 |
CAediting_1183409 | chr17_35267490_+ | SINE | Alu | AluJr4 |
CAediting_1183410 | chr17_35267565_+ | SINE | Alu | AluJr4 |
CAediting_1183411 | chr17_35267591_+ | SINE | Alu | AluJr4 |
CAediting_1183412 | chr17_35267626_+ | SINE | Alu | AluJr4 |
CAediting_1183413 | chr17_35267648_+ | SINE | Alu | AluJr4 |
CAediting_1183414 | chr17_35267702_+ | SINE | Alu | AluJr4 |
CAediting_1183415 | chr17_35268483_+ | SINE | Alu | AluSx |
CAediting_1183416 | chr17_35268484_+ | SINE | Alu | AluSx |
CAediting_1183417 | chr17_35268488_+ | SINE | Alu | AluSx |
CAediting_1183418 | chr17_35268507_+ | SINE | Alu | AluSx |
CAediting_1183419 | chr17_35268515_+ | SINE | Alu | AluSx |
CAediting_1183420 | chr17_35268570_+ | SINE | Alu | AluSx |
CAediting_1183421 | chr17_35268626_+ | SINE | Alu | AluSx |
CAediting_1183422 | chr17_35268649_+ | SINE | Alu | AluSx |
CAediting_1183423 | chr17_35271125_+ | LINE | L1 | L1MEi |
CAediting_1183424 | chr17_35271153_+ | LINE | L1 | L1MEi |
CAediting_1183425 | chr17_35271154_+ | LINE | L1 | L1MEi |
CAediting_1183426 | chr17_35271155_+ | LINE | L1 | L1MEi |
CAediting_1183427 | chr17_35271157_+ | LINE | L1 | L1MEi |
CAediting_1183428 | chr17_35271774_+ | SINE | Alu | AluJb |
CAediting_1183429 | chr17_35271789_+ | SINE | Alu | AluJb |
CAediting_1183430 | chr17_35271791_+ | SINE | Alu | AluJb |
CAediting_1183431 | chr17_35271801_+ | SINE | Alu | AluJb |
CAediting_1183432 | chr17_35271946_+ | SINE | Alu | AluJb |
CAediting_1183433 | chr17_35271983_+ | SINE | Alu | AluJb |
Top |
RNA A-to-I editing events in the alternative splicing sites for SLFN5 |
RNA A-to-I editing(s) in the alternative splicing sites. |
AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000166750.8.SLFN5. |
Correlation between RNA A-to-I editing and PSI for ENSG00000166750.8.SLFN5. |
Top |
Differntial gene expression between RNA A-to-I edited versus non-edited samples for SLFN5 |
Differential gene expressions between RNA A-to-I edited and non-edited tumor samples. * The grey color means N/A. |
Correlation between RNA A-to-I editing and gene expression. |
- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
Top |
Protein coding region RNA A-to-I editings for SLFN5 |
- Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
Top |
The effects of the RNA editing to the miRNA binding sites for SLFN5 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1183423 | chr17_35271125_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4700-5p | 35271118 | 35271125 | 8mer-1a | 35271105 | 35271125 | 152.00 | -24.28 |
CAediting_1183424 | chr17_35271153_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-12123 | 35271150 | 35271156 | 7mer-m8 | 35271136 | 35271157 | 145.00 | -9.29 |
CAediting_1183424 | chr17_35271153_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-664a-3p | 35271149 | 35271156 | 8mer-1a | 35271134 | 35271156 | 160.00 | -15.17 |
CAediting_1183427 | chr17_35271157_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4729 | 35271150 | 35271156 | 7mer-m8 | 35271136 | 35271157 | 142.00 | -10.11 |
CAediting_1183406 | chr17_35267450_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-150-5p | 35267447 | 35267453 | 7mer-m8 | 35267431 | 35267454 | 150.00 | -16.43 |
CAediting_1183406 | chr17_35267450_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-186-3p | 35267445 | 35267452 | 8mer-1a | 35267431 | 35267452 | 140.00 | -20.27 |
CAediting_1183413 | chr17_35267648_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-3921 | 35267641 | 35267647 | 7mer-m8 | 35267623 | 35267648 | 142.00 | -17.47 |
CAediting_1183413 | chr17_35267648_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4653-5p | 35267641 | 35267647 | 7mer-m8 | 35267625 | 35267648 | 147.00 | -18.14 |
CAediting_1183413 | chr17_35267648_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6821-3p | 35267644 | 35267650 | 7mer-m8 | 35267631 | 35267651 | 146.00 | -11.64 |
CAediting_1183416 | chr17_35268484_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-18a-3p | 35268482 | 35268488 | 7mer-m8 | 35268467 | 35268489 | 140.00 | -16.84 |
CAediting_1183416 | chr17_35268484_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-3176 | 35268477 | 35268483 | 7mer-m8 | 35268466 | 35268484 | 141.00 | -19.87 |
CAediting_1183416 | chr17_35268484_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-3922-3p | 35268477 | 35268483 | 7mer-m8 | 35268464 | 35268484 | 144.00 | -15.59 |
CAediting_1183416 | chr17_35268484_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-874-3p | 35268481 | 35268487 | 7mer-m8 | 35268467 | 35268488 | 155.00 | -30.20 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1915-5p | 35268619 | 35268625 | 7mer-m8 | 35268604 | 35268626 | 155.00 | -22.81 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-3938 | 35268623 | 35268629 | 7mer-m8 | 35268609 | 35268630 | 151.00 | -18.53 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4755-5p | 35268622 | 35268628 | 7mer-m8 | 35268606 | 35268629 | 151.00 | -19.98 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-5006-3p | 35268622 | 35268628 | 7mer-m8 | 35268607 | 35268629 | 151.00 | -16.06 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-623 | 35268621 | 35268628 | 8mer-1a | 35268606 | 35268628 | 153.00 | -22.64 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6780b-3p | 35268621 | 35268627 | 7mer-1a | 35268605 | 35268627 | 147.00 | -24.82 |
CAediting_1183422 | chr17_35268649_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1281 | 35268642 | 35268648 | 7mer-m8 | 35268633 | 35268649 | 145.00 | -18.24 |
CAediting_1183429 | chr17_35271789_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-150-5p | 35271785 | 35271791 | 7mer-m8 | 35271771 | 35271792 | 140.00 | -15.80 |
CAediting_1183429 | chr17_35271789_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-186-3p | 35271783 | 35271790 | 8mer-1a | 35271766 | 35271790 | 141.00 | -19.75 |
CAediting_1183429 | chr17_35271789_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6778-3p | 35271787 | 35271793 | 7mer-m8 | 35271774 | 35271794 | 143.00 | -13.97 |
CAediting_1183430 | chr17_35271791_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-10392-3p | 35271789 | 35271796 | 8mer-1a | 35271772 | 35271796 | 144.00 | -19.76 |
CAediting_1183430 | chr17_35271791_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4749-3p | 35271787 | 35271793 | 7mer-m8 | 35271775 | 35271794 | 140.00 | -15.33 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1247-3p | 35267437 | 35267444 | 8mer-1a | 35267422 | 35267444 | 155.00 | -29.04 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4449 | 35267439 | 35267445 | 7mer-m8 | 35267427 | 35267446 | 155.00 | -29.24 |
CAediting_1183407 | chr17_35267453_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4313 | 35267449 | 35267455 | 7mer-m8 | 35267437 | 35267456 | 142.00 | -19.64 |
CAediting_1183411 | chr17_35267591_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-933 | 35267587 | 35267593 | 7mer-m8 | 35267573 | 35267594 | 140.00 | -22.54 |
CAediting_1183428 | chr17_35271774_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-513a-5p | 35271768 | 35271774 | 7mer-m8 | 35271758 | 35271775 | 148.00 | -20.07 |
CAediting_1183428 | chr17_35271774_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-513a-5p | 35271768 | 35271774 | 7mer-m8 | 35271758 | 35271775 | 148.00 | -20.07 |
CAediting_1183428 | chr17_35271774_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-638 | 35271773 | 35271779 | 7mer-1a | 35271755 | 35271779 | 151.00 | -32.33 |
CAediting_1183432 | chr17_35271946_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-8053 | 35271941 | 35271947 | 7mer-m8 | 35271924 | 35271948 | 153.00 | -17.71 |
RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1183428 | chr17_35271774_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-10399-5p | 35271769 | 35271775 | 7mer-m8 | 35271755 | 35271776 | 148 | -9.71 |
CAediting_1183432 | chr17_35271946_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1262 | 35271943 | 35271950 | 8mer-1a | 35271929 | 35271950 | 148 | -12.37 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1343-3p | 35267438 | 35267444 | 7mer-m8 | 35267425 | 35267445 | 145 | -18.74 |
CAediting_1183408 | chr17_35267458_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-3200-3p | 35267456 | 35267461 | 6mer | 35267441 | 35267462 | 140 | -23.24 |
CAediting_1183423 | chr17_35271125_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-450a-2-3p | 35271118 | 35271125 | 8mer-1a | 35271104 | 35271125 | 142 | -10.44 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-450b-3p | 35267435 | 35267441 | 7mer-m8 | 35267422 | 35267442 | 151 | -20.77 |
CAediting_1183414 | chr17_35267702_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4652-3p | 35267699 | 35267704 | 6mer | 35267685 | 35267705 | 140 | -18.74 |
CAediting_1183432 | chr17_35271946_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4701-3p | 35271943 | 35271950 | 8mer-1a | 35271931 | 35271950 | 145 | -12.75 |
CAediting_1183420 | chr17_35268570_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4735-5p | 35268564 | 35268570 | 7mer-m8 | 35268550 | 35268571 | 140 | -5.48 |
CAediting_1183414 | chr17_35267702_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4743-3p | 35267698 | 35267704 | 7mer-m8 | 35267682 | 35267705 | 143 | -14.48 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4753-3p | 35268622 | 35268628 | 7mer-1a | 35268607 | 35268628 | 152 | -27.82 |
CAediting_1183407 | chr17_35267453_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4757-5p | 35267451 | 35267457 | 7mer-1a | 35267436 | 35267457 | 142 | -20.42 |
CAediting_1183430 | chr17_35271791_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4757-5p | 35271788 | 35271794 | 7mer-m8 | 35271774 | 35271795 | 146 | -17.33 |
CAediting_1183413 | chr17_35267648_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-499b-5p | 35267646 | 35267653 | 8mer-1a | 35267634 | 35267653 | 150 | -14 |
CAediting_1183422 | chr17_35268649_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-5001-3p | 35268644 | 35268650 | 7mer-m8 | 35268627 | 35268651 | 152 | -20.54 |
CAediting_1183429 | chr17_35271789_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-513c-5p | 35271785 | 35271790 | 6mer | 35271770 | 35271791 | 143 | -14.2 |
CAediting_1183430 | chr17_35271791_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-513c-5p | 35271785 | 35271790 | 6mer | 35271770 | 35271791 | 143 | -14.2 |
CAediting_1183421 | chr17_35268626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-5571-5p | 35268624 | 35268630 | 7mer-m8 | 35268611 | 35268631 | 140 | -18.18 |
CAediting_1183428 | chr17_35271774_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6504-3p | 35271769 | 35271775 | 7mer-m8 | 35271755 | 35271776 | 153 | -14.48 |
CAediting_1183413 | chr17_35267648_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6505-3p | 35267644 | 35267650 | 7mer-m8 | 35267631 | 35267651 | 140 | -9 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6506-5p | 35267436 | 35267442 | 7mer-m8 | 35267424 | 35267443 | 152 | -18.77 |
CAediting_1183432 | chr17_35271946_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6736-5p | 35271943 | 35271950 | 8mer-1a | 35271930 | 35271950 | 140 | -16.53 |
CAediting_1183430 | chr17_35271791_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6744-3p | 35271788 | 35271794 | 7mer-m8 | 35271773 | 35271795 | 145 | -18.78 |
CAediting_1183412 | chr17_35267626_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6747-3p | 35267621 | 35267628 | 8mer-1a | 35267605 | 35267628 | 149 | -23.42 |
CAediting_1183431 | chr17_35271801_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6747-3p | 35271796 | 35271802 | 7mer-m8 | 35271782 | 35271803 | 154 | -23.53 |
CAediting_1183414 | chr17_35267702_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6773-3p | 35267696 | 35267703 | 8mer-1a | 35267682 | 35267703 | 142 | -16.34 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6783-3p | 35267438 | 35267444 | 7mer-m8 | 35267424 | 35267445 | 143 | -14 |
CAediting_1183407 | chr17_35267453_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6791-3p | 35267449 | 35267455 | 7mer-m8 | 35267435 | 35267456 | 149 | -21.03 |
CAediting_1183407 | chr17_35267453_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6829-3p | 35267449 | 35267455 | 7mer-m8 | 35267438 | 35267456 | 143 | -17.07 |
CAediting_1183422 | chr17_35268649_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6836-3p | 35268642 | 35268648 | 7mer-m8 | 35268629 | 35268649 | 140 | -15.39 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6838-3p | 35267440 | 35267446 | 7mer-m8 | 35267428 | 35267447 | 140 | -15.75 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6852-5p | 35267438 | 35267444 | 7mer-1a | 35267424 | 35267444 | 141 | -21.82 |
CAediting_1183407 | chr17_35267453_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6878-3p | 35267451 | 35267458 | 8mer-1a | 35267438 | 35267458 | 146 | -18.9 |
CAediting_1183408 | chr17_35267458_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6878-3p | 35267451 | 35267458 | 8mer-1a | 35267438 | 35267458 | 146 | -18.9 |
CAediting_1183405 | chr17_35267442_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-769-3p | 35267435 | 35267441 | 7mer-m8 | 35267420 | 35267442 | 148 | -20.78 |
RNA A-to-I editing in lncRNA gained miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in lncRNA lost miRNA binding sites. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to lncRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs lost binding to lncRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1304-3p | 35268104 | 35268110 | 7mer-m8 | 35268089 | 35268111 | 159 | -23.26 |
CAediting_846604 | chr11_93733708_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1304-3p | 35266356 | 35266363 | 8mer-1a | 35266341 | 35266363 | 151 | -22.41 |
CAediting_980496 | chr14_31014685_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-624-3p | 35267515 | 35267521 | 7mer-m8 | 35267502 | 35267522 | 156 | -14.08 |
CAediting_980496 | chr14_31014685_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-624-3p | 35267709 | 35267715 | 7mer-m8 | 35267696 | 35267716 | 156 | -14.64 |
CAediting_980496 | chr14_31014685_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-624-3p | 35268706 | 35268712 | 7mer-m8 | 35268693 | 35268713 | 148 | -12.94 |
CAediting_980496 | chr14_31014685_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-624-3p | 35272022 | 35272028 | 7mer-m8 | 35272009 | 35272029 | 148 | -15.67 |
CAediting_393 | chr1_1167164_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-200b-3p | 35268465 | 35268471 | 7mer-m8 | 35268451 | 35268472 | 140 | -11.81 |
CAediting_393 | chr1_1167164_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-200b-3p | 35270648 | 35270654 | 7mer-m8 | 35270634 | 35270655 | 151 | -15.1 |
CAediting_1306323 | chr19_13836462_- | ENSG00000166750.8 | ENST00000542451 | hsa-miR-27a-3p | 35266125 | 35266131 | 7mer-m8 | 35266111 | 35266132 | 149 | -17.12 |
CAediting_524911 | chr7_5495852_- | ENSG00000166750.8 | ENST00000542451 | hsa-miR-589-3p | 35265829 | 35265835 | 7mer-m8 | 35265809 | 35265836 | 150 | -24.46 |
CAediting_573001 | chr7_92204086_- | ENSG00000166750.8 | ENST00000542451 | hsa-miR-1285-5p | 35266128 | 35266134 | 7mer-m8 | 35266115 | 35266135 | 142 | -12.58 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-548aa | 35270663 | 35270669 | 7mer-m8 | 35270646 | 35270670 | 153 | -14.51 |
CAediting_1160181 | chr17_7017644_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-195-3p | 35270373 | 35270379 | 7mer-m8 | 35270359 | 35270380 | 140 | -8.87 |
CAediting_1306323 | chr19_13836462_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-27a-3p | 35266125 | 35266131 | 7mer-m8 | 35266111 | 35266132 | 149 | -17.12 |
CAediting_1351755 | chr19_40282625_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-641 | 35268742 | 35268748 | 7mer-m8 | 35268726 | 35268749 | 140 | -13.58 |
CAediting_1351755 | chr19_40282625_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-641 | 35270821 | 35270827 | 7mer-m8 | 35270805 | 35270828 | 142 | -15.43 |
CAediting_1351755 | chr19_40282625_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-641 | 35273207 | 35273213 | 7mer-m8 | 35273191 | 35273214 | 140 | -13.04 |
CAediting_1399425 | chr20_1392958_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6869-5p | 35268275 | 35268281 | 7mer-m8 | 35268261 | 35268282 | 144 | -15.01 |
CAediting_228905 | chr2_188297554_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-561-3p | 35268849 | 35268855 | 7mer-m8 | 35268835 | 35268856 | 140 | -10.72 |
CAediting_228905 | chr2_188297554_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-561-3p | 35266877 | 35266883 | 7mer-m8 | 35266860 | 35266884 | 149 | -16.36 |
CAediting_414656 | chr5_72878640_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-4804-3p | 35270921 | 35270928 | 8mer-1a | 35270908 | 35270928 | 150 | -17.62 |
CAediting_604450 | chr7_133034877_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-3654 | 35268516 | 35268522 | 7mer-m8 | 35268505 | 35268523 | 140 | -18.22 |
CAediting_573001 | chr7_92204086_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1285-5p | 35266128 | 35266134 | 7mer-m8 | 35266115 | 35266135 | 142 | -12.58 |
RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1306323 | chr19_13836462_- | ENSG00000166750.8 | ENST00000542451 | hsa-miR-27a-3p | 35265937 | 35265944 | 8mer-1a | 35265924 | 35265944 | 147 | -11.87 |
CAediting_442554 | chr5_154685830_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1303 | 35265927 | 35265933 | 7mer-m8 | 35265914 | 35265934 | 154 | -14.6 |
CAediting_846604 | chr11_93733708_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1304-3p | 35267509 | 35267515 | 7mer-1a | 35267493 | 35267515 | 142 | -20.68 |
CAediting_846604 | chr11_93733708_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-1304-3p | 35266248 | 35266254 | 7mer-m8 | 35266234 | 35266255 | 147 | -22.85 |
CAediting_1160181 | chr17_7017644_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-195-3p | 35273640 | 35273646 | 7mer-m8 | 35273627 | 35273647 | 147 | -7.7 |
CAediting_86358 | chr1_109598906_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-197-5p | 35268274 | 35268281 | 8mer-1a | 35268259 | 35268281 | 145 | -15.19 |
CAediting_393 | chr1_1167164_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-200b-3p | 35270253 | 35270259 | 7mer-m8 | 35270239 | 35270260 | 144 | -8.96 |
CAediting_1306323 | chr19_13836462_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-27a-3p | 35265937 | 35265944 | 8mer-1a | 35265924 | 35265944 | 147 | -11.87 |
CAediting_1368054 | chr19_46709310_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-320e | 35267493 | 35267499 | 7mer-m8 | 35267482 | 35267500 | 149 | -15.66 |
CAediting_117844 | chr1_162342605_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-556-3p | 35270478 | 35270484 | 7mer-m8 | 35270465 | 35270485 | 150 | -7.82 |
CAediting_117844 | chr1_162342605_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-556-3p | 35273287 | 35273293 | 7mer-m8 | 35273269 | 35273294 | 148 | -10.96 |
CAediting_228905 | chr2_188297554_+ | ENSG00000166750.8 | ENST00000299977 | hsa-miR-561-3p | 35272830 | 35272837 | 8mer-1a | 35272816 | 35272837 | 142 | -7.27 |
CAediting_524911 | chr7_5495852_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-589-3p | 35268312 | 35268319 | 8mer-1a | 35268297 | 35268319 | 145 | -13.41 |
CAediting_1399425 | chr20_1392958_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6869-5p | 35267606 | 35267612 | 7mer-m8 | 35267591 | 35267613 | 147 | -16.01 |
CAediting_1399425 | chr20_1392958_- | ENSG00000166750.8 | ENST00000299977 | hsa-miR-6869-5p | 35268603 | 35268609 | 7mer-m8 | 35268588 | 35268610 | 146 | -19.84 |
Differentially expressed gene-miRNA network |
Top |
The effects of the RNA editing to the stability of the RNA structures for SLFN5 |
- RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
RNA A-to-I editing in RNA structures for Minimum free energy (MFE). |
CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
Top |
Relation with ADAR for SLFN5 |
Correlation between ADAR gene expression and RNA editing frequency |
Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
STAD | CAediting_1183400 | chr17_35263755_+ | . | . | . | . | 0.0470771400855163 | 0.224119789416008 |
BRCA | CAediting_1183424 | chr17_35271153_+ | 5.26158818089593e-05 | 0.158034962053858 | . | . | . | . |
CESC | CAediting_1183424 | chr17_35271153_+ | 0.000302194635989471 | 0.310827081444112 | . | . | . | . |
LUAD | CAediting_1183424 | chr17_35271153_+ | 4.67509591808407e-07 | 0.262917586652749 | . | . | . | . |
LUSC | CAediting_1183424 | chr17_35271153_+ | 1.89309317176652e-06 | 0.285236423565352 | . | . | 0.0447724828739196 | 0.122237853101185 |
THCA | CAediting_1183424 | chr17_35271153_+ | 0.00162612594037394 | 0.165968916012572 | . | . | . | . |
UCEC | CAediting_1183424 | chr17_35271153_+ | 0.000107791271289229 | 0.33942316199802 | . | . | . | . |
KIRP | CAediting_1183424 | chr17_35271153_+ | 0.0411305231101838 | 0.241330680259659 | . | . | . | . |
ESCA | CAediting_1183424 | chr17_35271153_+ | . | . | 0.00487010926842444 | 0.278066573676244 | . | . |
OV | CAediting_1183424 | chr17_35271153_+ | 0.000608754553961015 | 0.244561363590002 | . | . | . | . |
PAAD | CAediting_1183424 | chr17_35271153_+ | 0.0101205673436868 | 0.257363023627109 | . | . | . | . |
SARC | CAediting_1183424 | chr17_35271153_+ | 0.00372746890613279 | 0.283356431096278 | . | . | . | . |
LUAD | CAediting_1183426 | chr17_35271155_+ | 1.66692144974906e-07 | 0.603290916287947 | . | . | . | . |
BLCA | CAediting_1183427 | chr17_35271157_+ | 0.00286646267585818 | 0.292357292131827 | . | . | . | . |
BRCA | CAediting_1183427 | chr17_35271157_+ | 1.4588260750146e-15 | 0.329678086677172 | . | . | 0.00818995387649941 | 0.112035287264169 |
CESC | CAediting_1183427 | chr17_35271157_+ | 0.000608302988529516 | 0.33532954321618 | . | . | 0.00347718735982603 | 0.288149437685981 |
LUAD | CAediting_1183427 | chr17_35271157_+ | 4.74543668321238e-16 | 0.43231779098927 | . | . | . | . |
LUSC | CAediting_1183427 | chr17_35271157_+ | 5.5877012347494e-08 | 0.352382059851634 | . | . | . | . |
HNSC | CAediting_1183427 | chr17_35271157_+ | 0.00379989237349847 | 0.207414112046929 | . | . | . | . |
STAD | CAediting_1183427 | chr17_35271157_+ | 0.0055534788039714 | 0.220346875496579 | . | . | . | . |
UCEC | CAediting_1183427 | chr17_35271157_+ | 3.72941839213079e-05 | 0.382484247245256 | . | . | . | . |
OV | CAediting_1183427 | chr17_35271157_+ | 0.00472724622216048 | 0.220246575871844 | . | . | . | . |
PAAD | CAediting_1183427 | chr17_35271157_+ | 0.0482787925594053 | 0.216163981242407 | . | . | . | . |
SKCM | CAediting_1183427 | chr17_35271157_+ | 0.00532918115944512 | 0.2700879597102 | . | . | . | . |
SARC | CAediting_1183427 | chr17_35271157_+ | 0.0041236813293841 | 0.311705734473241 | . | . | . | . |
Top |
Relation with cancer stages for SLFN5 |
Correlation between Cancer stages and RNA editing frequency |
Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BLCA | pathologic_stage | CAediting_1183427 | chr17_35271157_+ | 0.0212195866273662 | 0.227932779921846 |
BRCA | pathologic_stage | CAediting_1183425 | chr17_35271154_+ | 0.0427976741810069 | 0.189252352005412 |
ESCA | pathologic_stage | CAediting_1183394 | chr17_35263735_+ | 0.0158458682352033 | 0.300473675990711 |
ESCA | pathologic_stage | CAediting_1183395 | chr17_35263738_+ | 0.0196469877409379 | 0.267159625679263 |
ESCA | pathologic_stage | CAediting_1183401 | chr17_35263758_+ | 0.011371414880237 | 0.314509711854189 |
HNSC | clinical_stage | CAediting_1183427 | chr17_35271157_+ | 0.0296019973366703 | 0.158286428788405 |
HNSC | pathologic_stage | CAediting_1183424 | chr17_35271153_+ | 0.00141299492171497 | 0.211563333198981 |
HNSC | pathologic_stage | CAediting_1183427 | chr17_35271157_+ | 5.65853626953084e-05 | 0.300343888329853 |
KIRC | pathologic_stage | CAediting_1183427 | chr17_35271157_+ | 0.00117767016129479 | 0.18432114723706 |
LUSC | pathologic_stage | CAediting_1183424 | chr17_35271153_+ | 0.0131758531722107 | 0.15154492508624 |
STAD | pathologic_stage | CAediting_1183352 | chr17_35263231_+ | 0.0411855290856663 | -0.276259472628797 |
Top |
Relation with survival for SLFN5 |
Correlation between RNA editing and survival |
Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
PAAD | CAediting_1183424 | chr17_35271153_+ | 0.0249895967040183 | 0.0471337 | 14.7277 |
Top |
RelatedDrugs for SLFN5 |
Approved drugs targeting this gene. (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
Top |
RelatedDiseases for SLFN5 |
Diseases associated with this gene. (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |