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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CLEC12A (CAeditome ID:160364) |
Gene summary for CLEC12A |
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Gene information | Gene symbol | CLEC12A | Gene ID | 160364 |
Gene name | C-type lectin domain family 12 member A | |
Synonyms | CD371|CLL-1|CLL1|DCAL-2|MICL | |
Cytomap | 12p13.31 | |
Type of gene | protein-coding | |
Description | C-type lectin domain family 12 member AC-type lectin protein CLL-1C-type lectin-like molecule-1dendritic cell-associated lectin 2myeloid inhibitory C-type lectin-like receptor | |
Modification date | 20210531 | |
UniProtAcc | Q5QGZ9 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for CLEC12A |
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CAediting_867496(9954271, +), CAediting_867497(9954288, +), CAediting_867498(9954296, +), CAediting_867499(9954333, +), CAediting_867500(9954339, +), CAediting_867501(9954342, +), CAediting_867502(9954358, +), CAediting_867503(9954374, +), CAediting_867504(9954380, +), CAediting_867505(9954388, +), CAediting_867506(9954397, +), CAediting_867507(9954410, +), CAediting_867508(9954415, +), CAediting_867509(9955167, +), CAediting_867510(9955294, +), |
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RNA editing positional annotations for CLEC12A using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_867496 | chr12_9954271_+ | intronic |
CAediting_867497 | chr12_9954288_+ | intronic |
CAediting_867498 | chr12_9954296_+ | intronic |
CAediting_867499 | chr12_9954333_+ | intronic |
CAediting_867500 | chr12_9954339_+ | intronic |
CAediting_867501 | chr12_9954342_+ | intronic |
CAediting_867502 | chr12_9954358_+ | intronic |
CAediting_867503 | chr12_9954374_+ | intronic |
CAediting_867504 | chr12_9954380_+ | intronic |
CAediting_867505 | chr12_9954388_+ | intronic |
CAediting_867506 | chr12_9954397_+ | intronic |
CAediting_867507 | chr12_9954410_+ | intronic |
CAediting_867508 | chr12_9954415_+ | intronic |
CAediting_867509 | chr12_9955167_+ | intronic |
CAediting_867510 | chr12_9955294_+ | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_867496 | chr12_9954271_+ | SINE | Alu | AluJb |
CAediting_867497 | chr12_9954288_+ | SINE | Alu | AluJb |
CAediting_867498 | chr12_9954296_+ | SINE | Alu | AluJb |
CAediting_867499 | chr12_9954333_+ | SINE | Alu | AluJb |
CAediting_867500 | chr12_9954339_+ | SINE | Alu | AluJb |
CAediting_867501 | chr12_9954342_+ | SINE | Alu | AluJb |
CAediting_867502 | chr12_9954358_+ | SINE | Alu | AluJb |
CAediting_867503 | chr12_9954374_+ | SINE | Alu | AluJb |
CAediting_867504 | chr12_9954380_+ | SINE | Alu | AluJb |
CAediting_867505 | chr12_9954388_+ | SINE | Alu | AluJb |
CAediting_867506 | chr12_9954397_+ | SINE | Alu | AluJb |
CAediting_867507 | chr12_9954410_+ | SINE | Alu | AluJb |
CAediting_867508 | chr12_9954415_+ | SINE | Alu | AluJb |
CAediting_867509 | chr12_9955167_+ | SINE | Alu | AluY |
CAediting_867510 | chr12_9955294_+ | SINE | Alu | AluY |
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RNA A-to-I editing events in the alternative splicing sites for CLEC12A |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CLEC12A |
![]() * The grey color means N/A. |
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LUSC.CAediting_867503.ENSG00000172322.CLEC12A.png ![]() |
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Protein coding region RNA A-to-I editings for CLEC12A |
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The effects of the RNA editing to the miRNA binding sites for CLEC12A |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000172322.12 | ENST00000434319 | hsa-miR-1304-3p | 9983661 | 9983667 | 7mer-m8 | 9983649 | 9983668 | 153 | -19.75 |
CAediting_1160181 | chr17_7017644_- | ENSG00000172322.12 | ENST00000434319 | hsa-miR-195-3p | 9984035 | 9984041 | 7mer-m8 | 9984021 | 9984042 | 152 | -10.69 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for CLEC12A |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for CLEC12A |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
HNSC | CAediting_867497 | chr12_9954288_+ | . | . | 0.0265520920372699 | 0.27944982395941 | . | . |
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Relation with cancer stages for CLEC12A |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for CLEC12A |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CLEC12A |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for CLEC12A |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
CLEC12A | C0003873 | Rheumatoid Arthritis | 1 | CTD_human |