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Editing gene: TTC39B (CAeditome ID:158219)

Gene summary for TTC39B

Gene summary

Gene information	Gene symbol	TTC39B
	Gene ID	158219
	Gene name	tetratricopeptide repeat domain 39B
	Synonyms	C9orf52
	Cytomap	9p22.3
	Type of gene	protein-coding
	Description	tetratricopeptide repeat protein 39BTPR repeat protein 39B
	Modification date	20210528
	UniProtAcc	Q5VTQ0
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for TTC39B

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000155158.19

RNA A-to-I editing events in Cancer.

CAediting_677458(15165081, -), CAediting_677459(15165155, -), CAediting_677460(15165181, -), CAediting_677461(15165207, -), CAediting_677462(15165225, -), CAediting_677463(15165239, -), CAediting_677464(15165284, -), CAediting_677465(15165300, -), CAediting_677466(15165303, -), CAediting_677467(15165321, -), CAediting_677468(15167066, -), CAediting_677469(15167070, -), CAediting_677470(15167072, -), CAediting_677471(15167079, -), CAediting_677472(15167089, -), CAediting_677473(15167094, -), CAediting_677474(15167099, -), CAediting_677475(15167102, -), CAediting_677476(15167104, -), CAediting_677477(15167105, -), CAediting_677478(15167109, -), CAediting_677479(15167113, -), CAediting_677480(15167115, -), CAediting_677481(15167120, -), CAediting_677482(15167126, -), CAediting_677483(15167129, -), CAediting_677484(15167142, -), CAediting_677485(15167152, -), CAediting_677486(15167156, -), CAediting_677487(15167158, -), CAediting_677488(15167162, -), CAediting_677489(15167165, -), CAediting_677490(15167169, -), CAediting_677491(15167175, -), CAediting_677492(15167186, -), CAediting_677493(15167201, -), CAediting_677494(15167204, -), CAediting_677495(15167206, -), CAediting_677496(15167207, -), CAediting_677497(15167209, -), CAediting_677498(15167212, -), CAediting_677499(15167238, -), CAediting_677500(15167245, -), CAediting_677501(15167259, -), CAediting_677502(15167264, -), CAediting_677503(15167273, -), CAediting_677504(15167297, -), CAediting_677505(15167298, -), CAediting_677506(15167299, -), CAediting_677507(15167303, -), CAediting_677508(15167314, -), CAediting_677509(15167320, -), CAediting_677510(15167321, -), CAediting_677511(15167329, -), CAediting_677512(15167339, -), CAediting_677513(15167340, -), CAediting_677514(15167487, -), CAediting_677515(15167494, -), CAediting_677516(15167496, -), CAediting_677517(15167499, -), CAediting_677518(15167508, -), CAediting_677519(15167509, -), CAediting_677520(15167510, -), CAediting_677521(15167542, -), CAediting_677522(15167561, -), CAediting_677523(15167587, -), CAediting_677524(15167590, -), CAediting_677525(15167624, -), CAediting_677526(15167628, -), CAediting_677527(15167630, -), CAediting_677528(15167640, -), CAediting_677529(15167643, -), CAediting_677530(15167644, -), CAediting_677531(15167652, -), CAediting_677532(15167665, -), CAediting_677533(15167666, -), CAediting_677534(15167669, -), CAediting_677535(15167670, -), CAediting_677536(15167676, -), CAediting_677537(15167689, -), CAediting_677538(15167690, -), CAediting_677539(15167695, -), CAediting_677540(15167701, -), CAediting_677541(15167705, -), CAediting_677542(15167713, -), CAediting_677543(15167714, -), CAediting_677544(15167719, -), CAediting_677545(15167745, -), CAediting_677546(15167747, -), CAediting_677547(15167751, -), CAediting_677548(15168623, -), CAediting_677549(15168688, -), CAediting_677550(15168690, -), CAediting_677551(15168700, -), CAediting_677552(15168703, -), CAediting_677553(15168712, -), CAediting_677554(15168765, -), CAediting_677555(15168774, -), CAediting_677556(15168786, -), CAediting_677557(15178136, -), CAediting_677558(15178142, -), CAediting_677559(15178314, -), CAediting_677560(15178316, -), CAediting_677561(15178329, -), CAediting_677562(15178343, -), CAediting_677563(15178464, -), CAediting_677564(15178513, -), CAediting_677565(15178518, -), CAediting_677566(15178523, -), CAediting_677567(15178537, -), CAediting_677568(15186794, -), CAediting_677569(15231208, -), CAediting_677570(15241854, -), CAediting_677571(15241881, -), CAediting_677572(15241928, -), CAediting_677573(15242018, -), CAediting_677574(15242500, -), CAediting_677575(15257478, -), CAediting_677576(15257484, -), CAediting_677577(15257551, -), CAediting_677578(15261261, -), CAediting_677579(15261444, -), CAediting_677580(15280024, -), CAediting_677581(15280034, -), CAediting_677582(15289373, -), CAediting_677583(15289388, -), CAediting_677584(15289519, -), CAediting_677585(15289592, -), CAediting_677586(15289599, -), CAediting_677587(15289600, -), CAediting_677588(15289644, -), CAediting_677589(15289649, -), CAediting_677590(15289747, -), CAediting_677591(15289763, -), CAediting_677592(15291598, -), CAediting_677593(15291599, -), CAediting_677594(15291603, -), CAediting_677595(15291613, -), CAediting_677596(15291787, -), CAediting_677597(15291972, -), CAediting_677598(15292019, -), CAediting_677599(15292023, -), CAediting_677600(15292026, -), CAediting_677601(15292045, -), CAediting_677602(15292067, -), CAediting_677603(15292068, -), CAediting_677604(15292069, -), CAediting_677605(15301550, -), CAediting_677606(15301551, -), CAediting_677607(15301589, -), CAediting_677608(15301591, -), CAediting_677609(15301628, -), CAediting_677610(15301634, -), CAediting_677611(15301644, -), CAediting_677612(15301656, -), CAediting_677613(15301669, -), CAediting_677614(15302105, -), CAediting_677615(15302194, -), CAediting_677616(15302243, -), CAediting_677617(15302722, -), CAediting_677618(15303046, -), CAediting_677619(15303536, -), CAediting_677620(15303693, -),

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RNA editing positional annotations for TTC39B using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_677458	chr9_15165081_-	UTR3
CAediting_677459	chr9_15165155_-	UTR3
CAediting_677460	chr9_15165181_-	UTR3
CAediting_677461	chr9_15165207_-	UTR3
CAediting_677462	chr9_15165225_-	UTR3
CAediting_677463	chr9_15165239_-	UTR3
CAediting_677464	chr9_15165284_-	UTR3
CAediting_677465	chr9_15165300_-	UTR3
CAediting_677466	chr9_15165303_-	UTR3
CAediting_677467	chr9_15165321_-	UTR3
CAediting_677468	chr9_15167066_-	UTR3
CAediting_677469	chr9_15167070_-	UTR3
CAediting_677470	chr9_15167072_-	UTR3
CAediting_677471	chr9_15167079_-	UTR3
CAediting_677472	chr9_15167089_-	UTR3
CAediting_677473	chr9_15167094_-	UTR3
CAediting_677474	chr9_15167099_-	UTR3
CAediting_677475	chr9_15167102_-	UTR3
CAediting_677476	chr9_15167104_-	UTR3
CAediting_677477	chr9_15167105_-	UTR3
CAediting_677478	chr9_15167109_-	UTR3
CAediting_677479	chr9_15167113_-	UTR3
CAediting_677480	chr9_15167115_-	UTR3
CAediting_677481	chr9_15167120_-	UTR3
CAediting_677482	chr9_15167126_-	UTR3
CAediting_677483	chr9_15167129_-	UTR3
CAediting_677484	chr9_15167142_-	UTR3
CAediting_677485	chr9_15167152_-	UTR3
CAediting_677486	chr9_15167156_-	UTR3
CAediting_677487	chr9_15167158_-	UTR3
CAediting_677488	chr9_15167162_-	UTR3
CAediting_677489	chr9_15167165_-	UTR3
CAediting_677490	chr9_15167169_-	UTR3
CAediting_677491	chr9_15167175_-	UTR3
CAediting_677492	chr9_15167186_-	UTR3
CAediting_677493	chr9_15167201_-	UTR3
CAediting_677494	chr9_15167204_-	UTR3
CAediting_677495	chr9_15167206_-	UTR3
CAediting_677496	chr9_15167207_-	UTR3
CAediting_677497	chr9_15167209_-	UTR3
CAediting_677498	chr9_15167212_-	UTR3
CAediting_677499	chr9_15167238_-	UTR3
CAediting_677500	chr9_15167245_-	UTR3
CAediting_677501	chr9_15167259_-	UTR3
CAediting_677502	chr9_15167264_-	UTR3
CAediting_677503	chr9_15167273_-	UTR3
CAediting_677504	chr9_15167297_-	UTR3
CAediting_677505	chr9_15167298_-	UTR3
CAediting_677506	chr9_15167299_-	UTR3
CAediting_677507	chr9_15167303_-	UTR3
CAediting_677508	chr9_15167314_-	UTR3
CAediting_677509	chr9_15167320_-	UTR3
CAediting_677510	chr9_15167321_-	UTR3
CAediting_677511	chr9_15167329_-	UTR3
CAediting_677512	chr9_15167339_-	UTR3
CAediting_677513	chr9_15167340_-	UTR3
CAediting_677514	chr9_15167487_-	UTR3
CAediting_677515	chr9_15167494_-	UTR3
CAediting_677516	chr9_15167496_-	UTR3
CAediting_677517	chr9_15167499_-	UTR3
CAediting_677518	chr9_15167508_-	UTR3
CAediting_677519	chr9_15167509_-	UTR3
CAediting_677520	chr9_15167510_-	UTR3
CAediting_677521	chr9_15167542_-	UTR3
CAediting_677522	chr9_15167561_-	UTR3
CAediting_677523	chr9_15167587_-	UTR3
CAediting_677524	chr9_15167590_-	UTR3
CAediting_677525	chr9_15167624_-	UTR3
CAediting_677526	chr9_15167628_-	UTR3
CAediting_677527	chr9_15167630_-	UTR3
CAediting_677528	chr9_15167640_-	UTR3
CAediting_677529	chr9_15167643_-	UTR3
CAediting_677530	chr9_15167644_-	UTR3
CAediting_677531	chr9_15167652_-	UTR3
CAediting_677532	chr9_15167665_-	UTR3
CAediting_677533	chr9_15167666_-	UTR3
CAediting_677534	chr9_15167669_-	UTR3
CAediting_677535	chr9_15167670_-	UTR3
CAediting_677536	chr9_15167676_-	UTR3
CAediting_677537	chr9_15167689_-	UTR3
CAediting_677538	chr9_15167690_-	UTR3
CAediting_677539	chr9_15167695_-	UTR3
CAediting_677540	chr9_15167701_-	UTR3
CAediting_677541	chr9_15167705_-	UTR3
CAediting_677542	chr9_15167713_-	UTR3
CAediting_677543	chr9_15167714_-	UTR3
CAediting_677544	chr9_15167719_-	UTR3
CAediting_677545	chr9_15167745_-	UTR3
CAediting_677546	chr9_15167747_-	UTR3
CAediting_677547	chr9_15167751_-	UTR3
CAediting_677548	chr9_15168623_-	UTR3
CAediting_677549	chr9_15168688_-	UTR3
CAediting_677550	chr9_15168690_-	UTR3
CAediting_677551	chr9_15168700_-	UTR3
CAediting_677552	chr9_15168703_-	UTR3
CAediting_677553	chr9_15168712_-	UTR3
CAediting_677554	chr9_15168765_-	UTR3
CAediting_677555	chr9_15168774_-	UTR3
CAediting_677556	chr9_15168786_-	UTR3
CAediting_677557	chr9_15178136_-	ncRNA_intronic
CAediting_677558	chr9_15178142_-	ncRNA_intronic
CAediting_677559	chr9_15178314_-	ncRNA_intronic
CAediting_677560	chr9_15178316_-	ncRNA_intronic
CAediting_677561	chr9_15178329_-	ncRNA_intronic
CAediting_677562	chr9_15178343_-	ncRNA_intronic
CAediting_677563	chr9_15178464_-	ncRNA_intronic
CAediting_677564	chr9_15178513_-	ncRNA_intronic
CAediting_677565	chr9_15178518_-	ncRNA_intronic
CAediting_677566	chr9_15178523_-	ncRNA_intronic
CAediting_677567	chr9_15178537_-	ncRNA_intronic
CAediting_677568	chr9_15186794_-	ncRNA_exonic
CAediting_677569	chr9_15231208_-	ncRNA_intronic
CAediting_677570	chr9_15241854_-	ncRNA_intronic
CAediting_677571	chr9_15241881_-	ncRNA_intronic
CAediting_677572	chr9_15241928_-	ncRNA_intronic
CAediting_677573	chr9_15242018_-	ncRNA_intronic
CAediting_677574	chr9_15242500_-	ncRNA_intronic
CAediting_677575	chr9_15257478_-	ncRNA_intronic
CAediting_677576	chr9_15257484_-	ncRNA_intronic
CAediting_677577	chr9_15257551_-	ncRNA_intronic
CAediting_677578	chr9_15261261_-	ncRNA_intronic
CAediting_677579	chr9_15261444_-	ncRNA_intronic
CAediting_677580	chr9_15280024_-	ncRNA_intronic
CAediting_677581	chr9_15280034_-	ncRNA_intronic
CAediting_677582	chr9_15289373_-	ncRNA_intronic
CAediting_677583	chr9_15289388_-	ncRNA_intronic
CAediting_677584	chr9_15289519_-	ncRNA_intronic
CAediting_677585	chr9_15289592_-	ncRNA_intronic
CAediting_677586	chr9_15289599_-	ncRNA_intronic
CAediting_677587	chr9_15289600_-	ncRNA_intronic
CAediting_677588	chr9_15289644_-	ncRNA_intronic
CAediting_677589	chr9_15289649_-	ncRNA_intronic
CAediting_677590	chr9_15289747_-	ncRNA_intronic
CAediting_677591	chr9_15289763_-	ncRNA_intronic
CAediting_677592	chr9_15291598_-	ncRNA_intronic
CAediting_677593	chr9_15291599_-	ncRNA_intronic
CAediting_677594	chr9_15291603_-	ncRNA_intronic
CAediting_677595	chr9_15291613_-	ncRNA_intronic
CAediting_677596	chr9_15291787_-	ncRNA_intronic
CAediting_677597	chr9_15291972_-	ncRNA_intronic
CAediting_677598	chr9_15292019_-	ncRNA_intronic
CAediting_677599	chr9_15292023_-	ncRNA_intronic
CAediting_677600	chr9_15292026_-	ncRNA_intronic
CAediting_677601	chr9_15292045_-	ncRNA_intronic
CAediting_677602	chr9_15292067_-	ncRNA_intronic
CAediting_677603	chr9_15292068_-	ncRNA_intronic
CAediting_677604	chr9_15292069_-	ncRNA_intronic
CAediting_677605	chr9_15301550_-	ncRNA_intronic
CAediting_677606	chr9_15301551_-	ncRNA_intronic
CAediting_677607	chr9_15301589_-	ncRNA_intronic
CAediting_677608	chr9_15301591_-	ncRNA_intronic
CAediting_677609	chr9_15301628_-	ncRNA_intronic
CAediting_677610	chr9_15301634_-	ncRNA_intronic
CAediting_677611	chr9_15301644_-	ncRNA_intronic
CAediting_677612	chr9_15301656_-	ncRNA_intronic
CAediting_677613	chr9_15301669_-	ncRNA_intronic
CAediting_677614	chr9_15302105_-	ncRNA_intronic
CAediting_677615	chr9_15302194_-	ncRNA_intronic
CAediting_677616	chr9_15302243_-	ncRNA_intronic
CAediting_677617	chr9_15302722_-	ncRNA_intronic
CAediting_677618	chr9_15303046_-	ncRNA_intronic
CAediting_677619	chr9_15303536_-	ncRNA_intronic
CAediting_677620	chr9_15303693_-	ncRNA_intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_677458	chr9_15165081_-	SINE	Alu	AluSp
CAediting_677459	chr9_15165155_-	SINE	Alu	AluSp
CAediting_677460	chr9_15165181_-	SINE	Alu	AluSp
CAediting_677461	chr9_15165207_-	SINE	Alu	AluSp
CAediting_677462	chr9_15165225_-	SINE	Alu	AluSp
CAediting_677463	chr9_15165239_-	SINE	Alu	AluSp
CAediting_677464	chr9_15165284_-	SINE	Alu	AluSp
CAediting_677465	chr9_15165300_-	SINE	Alu	AluSp
CAediting_677466	chr9_15165303_-	SINE	Alu	AluSp
CAediting_677467	chr9_15165321_-	SINE	Alu	AluSp
CAediting_677468	chr9_15167066_-	SINE	Alu	AluJr
CAediting_677469	chr9_15167070_-	SINE	Alu	AluJr
CAediting_677470	chr9_15167072_-	SINE	Alu	AluJr
CAediting_677471	chr9_15167079_-	SINE	Alu	AluJr
CAediting_677472	chr9_15167089_-	SINE	Alu	AluJr
CAediting_677473	chr9_15167094_-	SINE	Alu	AluJr
CAediting_677474	chr9_15167099_-	SINE	Alu	AluJr
CAediting_677475	chr9_15167102_-	SINE	Alu	AluJr
CAediting_677476	chr9_15167104_-	SINE	Alu	AluJr
CAediting_677477	chr9_15167105_-	SINE	Alu	AluJr
CAediting_677478	chr9_15167109_-	SINE	Alu	AluJr
CAediting_677479	chr9_15167113_-	SINE	Alu	AluJr
CAediting_677480	chr9_15167115_-	SINE	Alu	AluJr
CAediting_677481	chr9_15167120_-	SINE	Alu	AluJr
CAediting_677482	chr9_15167126_-	SINE	Alu	AluJr
CAediting_677483	chr9_15167129_-	SINE	Alu	AluJr
CAediting_677484	chr9_15167142_-	SINE	Alu	AluJr
CAediting_677485	chr9_15167152_-	SINE	Alu	AluJr
CAediting_677486	chr9_15167156_-	SINE	Alu	AluJr
CAediting_677487	chr9_15167158_-	SINE	Alu	AluJr
CAediting_677488	chr9_15167162_-	SINE	Alu	AluJr
CAediting_677489	chr9_15167165_-	SINE	Alu	AluJr
CAediting_677490	chr9_15167169_-	SINE	Alu	AluJr
CAediting_677491	chr9_15167175_-	SINE	Alu	AluJr
CAediting_677492	chr9_15167186_-	SINE	Alu	AluJr
CAediting_677493	chr9_15167201_-	SINE	Alu	AluJr
CAediting_677494	chr9_15167204_-	SINE	Alu	AluJr
CAediting_677495	chr9_15167206_-	SINE	Alu	AluJr
CAediting_677496	chr9_15167207_-	SINE	Alu	AluJr
CAediting_677497	chr9_15167209_-	SINE	Alu	AluJr
CAediting_677498	chr9_15167212_-	SINE	Alu	AluJr
CAediting_677499	chr9_15167238_-	SINE	Alu	AluJr
CAediting_677500	chr9_15167245_-	SINE	Alu	AluJr
CAediting_677501	chr9_15167259_-	SINE	Alu	AluJr
CAediting_677502	chr9_15167264_-	SINE	Alu	AluJr
CAediting_677503	chr9_15167273_-	SINE	Alu	AluJr
CAediting_677504	chr9_15167297_-	SINE	Alu	AluJr
CAediting_677505	chr9_15167298_-	SINE	Alu	AluJr
CAediting_677506	chr9_15167299_-	SINE	Alu	AluJr
CAediting_677507	chr9_15167303_-	SINE	Alu	AluJr
CAediting_677508	chr9_15167314_-	SINE	Alu	AluJr
CAediting_677509	chr9_15167320_-	SINE	Alu	AluJr
CAediting_677510	chr9_15167321_-	SINE	Alu	AluJr
CAediting_677511	chr9_15167329_-	SINE	Alu	AluJr
CAediting_677512	chr9_15167339_-	SINE	Alu	AluJr
CAediting_677513	chr9_15167340_-	SINE	Alu	AluJr
CAediting_677514	chr9_15167487_-	SINE	Alu	AluSp
CAediting_677515	chr9_15167494_-	SINE	Alu	AluSp
CAediting_677516	chr9_15167496_-	SINE	Alu	AluSp
CAediting_677517	chr9_15167499_-	SINE	Alu	AluSp
CAediting_677518	chr9_15167508_-	SINE	Alu	AluSp
CAediting_677519	chr9_15167509_-	SINE	Alu	AluSp
CAediting_677520	chr9_15167510_-	SINE	Alu	AluSp
CAediting_677521	chr9_15167542_-	SINE	Alu	AluSp
CAediting_677522	chr9_15167561_-	SINE	Alu	AluSp
CAediting_677523	chr9_15167587_-	SINE	Alu	AluSp
CAediting_677524	chr9_15167590_-	SINE	Alu	AluSp
CAediting_677525	chr9_15167624_-	SINE	Alu	AluSp
CAediting_677526	chr9_15167628_-	SINE	Alu	AluSp
CAediting_677527	chr9_15167630_-	SINE	Alu	AluSp
CAediting_677528	chr9_15167640_-	SINE	Alu	AluSp
CAediting_677529	chr9_15167643_-	SINE	Alu	AluSp
CAediting_677530	chr9_15167644_-	SINE	Alu	AluSp
CAediting_677531	chr9_15167652_-	SINE	Alu	AluSp
CAediting_677532	chr9_15167665_-	SINE	Alu	AluSp
CAediting_677533	chr9_15167666_-	SINE	Alu	AluSp
CAediting_677534	chr9_15167669_-	SINE	Alu	AluSp
CAediting_677535	chr9_15167670_-	SINE	Alu	AluSp
CAediting_677536	chr9_15167676_-	SINE	Alu	AluSp
CAediting_677537	chr9_15167689_-	SINE	Alu	AluSp
CAediting_677538	chr9_15167690_-	SINE	Alu	AluSp
CAediting_677539	chr9_15167695_-	SINE	Alu	AluSp
CAediting_677540	chr9_15167701_-	SINE	Alu	AluSp
CAediting_677541	chr9_15167705_-	SINE	Alu	AluSp
CAediting_677542	chr9_15167713_-	SINE	Alu	AluSp
CAediting_677543	chr9_15167714_-	SINE	Alu	AluSp
CAediting_677544	chr9_15167719_-	SINE	Alu	AluSp
CAediting_677545	chr9_15167745_-	SINE	Alu	AluSp
CAediting_677546	chr9_15167747_-	SINE	Alu	AluSp
CAediting_677547	chr9_15167751_-	SINE	Alu	AluSp
CAediting_677548	chr9_15168623_-	SINE	Alu	AluY
CAediting_677549	chr9_15168688_-	SINE	Alu	AluY
CAediting_677550	chr9_15168690_-	SINE	Alu	AluY
CAediting_677551	chr9_15168700_-	SINE	Alu	AluY
CAediting_677552	chr9_15168703_-	SINE	Alu	AluY
CAediting_677553	chr9_15168712_-	SINE	Alu	AluY
CAediting_677554	chr9_15168765_-	SINE	Alu	AluY
CAediting_677555	chr9_15168774_-	SINE	Alu	AluY
CAediting_677556	chr9_15168786_-	SINE	Alu	AluY
CAediting_677557	chr9_15178136_-	SINE	Alu	AluY
CAediting_677558	chr9_15178142_-	SINE	Alu	AluY
CAediting_677559	chr9_15178314_-	SINE	Alu	AluJo
CAediting_677560	chr9_15178316_-	SINE	Alu	AluJo
CAediting_677561	chr9_15178329_-	SINE	Alu	AluJo
CAediting_677562	chr9_15178343_-	SINE	Alu	AluJo
CAediting_677563	chr9_15178464_-	SINE	Alu	AluJo
CAediting_677564	chr9_15178513_-	SINE	Alu	AluJo
CAediting_677565	chr9_15178518_-	SINE	Alu	AluJo
CAediting_677566	chr9_15178523_-	SINE	Alu	AluJo
CAediting_677567	chr9_15178537_-	SINE	Alu	AluJo
CAediting_677568	chr9_15186794_-	SINE	Alu	AluSc8
CAediting_677569	chr9_15231208_-	SINE	Alu	AluJo
CAediting_677570	chr9_15241854_-	SINE	Alu	AluSx1
CAediting_677571	chr9_15241881_-	SINE	Alu	AluSx1
CAediting_677572	chr9_15241928_-	SINE	Alu	AluSx1
CAediting_677573	chr9_15242018_-	SINE	Alu	AluSx1
CAediting_677574	chr9_15242500_-	SINE	Alu	AluJb
CAediting_677575	chr9_15257478_-	SINE	Alu	AluJb
CAediting_677576	chr9_15257484_-	SINE	Alu	AluJb
CAediting_677577	chr9_15257551_-	SINE	Alu	AluJb
CAediting_677578	chr9_15261261_-	SINE	Alu	AluJr
CAediting_677579	chr9_15261444_-	SINE	Alu	AluJr
CAediting_677580	chr9_15280024_-	SINE	Alu	AluSz6
CAediting_677581	chr9_15280034_-	SINE	Alu	AluSz6
CAediting_677584	chr9_15289519_-	SINE	MIR	MIRb
CAediting_677597	chr9_15291972_-	SINE	MIR	MIRb
CAediting_677605	chr9_15301550_-	SINE	Alu	AluSx
CAediting_677606	chr9_15301551_-	SINE	Alu	AluSx
CAediting_677607	chr9_15301589_-	SINE	Alu	AluSx
CAediting_677608	chr9_15301591_-	SINE	Alu	AluSx
CAediting_677609	chr9_15301628_-	SINE	Alu	AluSx
CAediting_677610	chr9_15301634_-	SINE	Alu	AluSx
CAediting_677611	chr9_15301644_-	SINE	Alu	AluSx
CAediting_677612	chr9_15301656_-	SINE	Alu	AluSx
CAediting_677613	chr9_15301669_-	SINE	Alu	AluSx
CAediting_677614	chr9_15302105_-	SINE	Alu	AluSx1
CAediting_677615	chr9_15302194_-	SINE	Alu	AluSx1
CAediting_677616	chr9_15302243_-	SINE	Alu	AluSx1
CAediting_677617	chr9_15302722_-	SINE	Alu	AluSq2
CAediting_677618	chr9_15303046_-	SINE	Alu	AluSc
CAediting_677619	chr9_15303536_-	SINE	Alu	AluJr
CAediting_677620	chr9_15303693_-	SINE	Alu	AluSq2

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RNA A-to-I editing events in the alternative splicing sites for TTC39B

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000155158.19.TTC39B.

Correlation between RNA A-to-I editing and PSI for ENSG00000155158.19.TTC39B.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for TTC39B

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

BRCA.CAediting_677511.ENSG00000155158.TTC39B.png
Soverview

OV.CAediting_677480.ENSG00000155158.TTC39B.png
Soverview

THCA.CAediting_677480.ENSG00000155158.TTC39B.png
Soverview

THCA.CAediting_677488.ENSG00000155158.TTC39B.png
Soverview

THCA.CAediting_677491.ENSG00000155158.TTC39B.png
Soverview

THCA.CAediting_677511.ENSG00000155158.TTC39B.png
Soverview

THCA.CAediting_677538.ENSG00000155158.TTC39B.png
Soverview

THYM.CAediting_677488.ENSG00000155158.TTC39B.png
Soverview

THYM.CAediting_677491.ENSG00000155158.TTC39B.png
Soverview

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Protein coding region RNA A-to-I editings for TTC39B

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for TTC39B

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_677474	chr9_15167099_-	ENSG00000155158.19	ENST00000512701	hsa-miR-564	15167094	15167100	7mer-1a	15167094	15167112	143.00	-18.53
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1184	15167112	15167118	7mer-m8	15167111	15167131	146.00	-16.59
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1184	15167112	15167118	7mer-m8	15167111	15167131	146.00	-16.59
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1184	15167112	15167118	7mer-m8	15167111	15167131	146.00	-16.59
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4418	15167111	15167117	7mer-m8	15167110	15167126	149.00	-21.77
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-509-3-5p	15167111	15167117	7mer-m8	15167110	15167130	145.00	-17.63
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-509-5p	15167111	15167117	7mer-m8	15167110	15167130	142.00	-15.40
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-509-5p	15167111	15167117	7mer-m8	15167110	15167130	142.00	-15.40
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7156-3p	15167113	15167119	7mer-m8	15167112	15167139	145.00	-25.91
CAediting_677483	chr9_15167129_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1247-3p	15167126	15167133	8mer-1a	15167126	15167146	144.00	-21.08
CAediting_677485	chr9_15167152_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3691-3p	15167151	15167157	7mer-m8	15167150	15167171	149.00	-15.39
CAediting_677488	chr9_15167162_-	ENSG00000155158.19	ENST00000512701	hsa-miR-2355-5p	15167158	15167164	7mer-m8	15167157	15167176	150.00	-20.11
CAediting_677489	chr9_15167165_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4524a-5p	15167162	15167168	7mer-m8	15167161	15167182	146.00	-11.35
CAediting_677489	chr9_15167165_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4524b-5p	15167162	15167168	7mer-m8	15167161	15167180	152.00	-11.98
CAediting_677489	chr9_15167165_-	ENSG00000155158.19	ENST00000512701	hsa-miR-646	15167162	15167169	8mer-1a	15167162	15167182	148.00	-15.92
CAediting_677491	chr9_15167175_-	ENSG00000155158.19	ENST00000512701	hsa-miR-125b-2-3p	15167175	15167181	7mer-m8	15167174	15167194	144.00	-15.03
CAediting_677502	chr9_15167264_-	ENSG00000155158.19	ENST00000512701	hsa-miR-5699-5p	15167261	15167267	7mer-m8	15167260	15167281	140.00	-14.24
CAediting_677502	chr9_15167264_-	ENSG00000155158.19	ENST00000512701	hsa-miR-874-5p	15167259	15167266	8mer-1a	15167259	15167281	157.00	-26.56
CAediting_677503	chr9_15167273_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6840-5p	15167269	15167275	7mer-m8	15167268	15167292	147.00	-26.76
CAediting_677504	chr9_15167297_-	ENSG00000155158.19	ENST00000512701	hsa-miR-212-5p	15167296	15167302	7mer-m8	15167295	15167318	154.00	-18.19
CAediting_677504	chr9_15167297_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6813-3p	15167295	15167301	7mer-m8	15167294	15167314	150.00	-20.35
CAediting_677507	chr9_15167303_-	ENSG00000155158.19	ENST00000512701	hsa-miR-150-5p	15167303	15167309	7mer-m8	15167302	15167322	142.00	-12.31
CAediting_677507	chr9_15167303_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6778-3p	15167301	15167307	7mer-m8	15167300	15167320	147.00	-13.97
CAediting_677507	chr9_15167303_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6878-3p	15167298	15167305	8mer-1a	15167298	15167318	142.00	-13.64
CAediting_677509	chr9_15167320_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3117-3p	15167314	15167321	8mer-1a	15167314	15167334	142.00	-14.11
CAediting_677509	chr9_15167320_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4759	15167315	15167322	8mer-1a	15167315	15167335	149.00	-15.80
CAediting_677510	chr9_15167321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-513a-5p	15167320	15167326	7mer-m8	15167319	15167336	144.00	-16.68
CAediting_677510	chr9_15167321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-513a-5p	15167320	15167326	7mer-m8	15167319	15167336	144.00	-16.68
CAediting_677511	chr9_15167329_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4634	15167325	15167331	7mer-m8	15167324	15167342	150.00	-23.50
CAediting_677516	chr9_15167496_-	ENSG00000155158.19	ENST00000512701	hsa-miR-106a-3p	15167494	15167499	6mer	15167493	15167514	141.00	-21.13
CAediting_677518	chr9_15167508_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3189-3p	15167507	15167513	7mer-m8	15167506	15167528	146.00	-20.88
CAediting_677518	chr9_15167508_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6813-3p	15167506	15167512	7mer-m8	15167505	15167525	140.00	-15.63
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3192-5p	15167508	15167515	8mer-1a	15167508	15167530	155.00	-26.39
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-326	15167507	15167513	7mer-m8	15167506	15167525	140.00	-14.14
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-330-5p	15167507	15167513	7mer-m8	15167506	15167527	140.00	-23.96
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4314	15167508	15167514	7mer-m8	15167507	15167524	140.00	-18.79
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-514a-5p	15167506	15167512	7mer-m8	15167505	15167525	154.00	-19.80
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-514a-5p	15167506	15167512	7mer-m8	15167505	15167525	154.00	-19.80
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-514a-5p	15167506	15167512	7mer-m8	15167505	15167525	154.00	-19.80
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1247-3p	15167674	15167680	7mer-m8	15167673	15167695	152.00	-24.12
CAediting_677537	chr9_15167689_-	ENSG00000155158.19	ENST00000512701	hsa-miR-17-3p	15167689	15167695	7mer-m8	15167688	15167709	150.00	-17.79
CAediting_677537	chr9_15167689_-	ENSG00000155158.19	ENST00000512701	hsa-miR-485-5p	15167685	15167691	7mer-m8	15167684	15167704	153.00	-19.66
CAediting_677537	chr9_15167689_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6884-5p	15167685	15167691	7mer-m8	15167684	15167706	142.00	-22.22
CAediting_677542	chr9_15167713_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4793-3p	15167713	15167719	7mer-m8	15167712	15167734	149.00	-19.36
CAediting_677542	chr9_15167713_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6807-3p	15167712	15167717	6mer	15167711	15167733	164.00	-29.18
CAediting_677458	chr9_15165081_-	ENSG00000155158.19	ENST00000512701	hsa-miR-662	15165080	15165085	6mer	15165079	15165101	153.00	-32.51
CAediting_677461	chr9_15165207_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1268a	15165204	15165210	7mer-m8	15165203	15165220	158.00	-28.83
CAediting_677461	chr9_15165207_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1268b	15165204	15165210	7mer-m8	15165203	15165222	158.00	-30.51
CAediting_677463	chr9_15165239_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6771-5p	15165238	15165244	7mer-m8	15165237	15165256	157.00	-30.52
CAediting_677464	chr9_15165284_-	ENSG00000155158.19	ENST00000512701	hsa-miR-485-5p	15165280	15165286	7mer-m8	15165279	15165299	141.00	-18.58
CAediting_677464	chr9_15165284_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6884-5p	15165280	15165286	7mer-m8	15165279	15165302	151.00	-19.90
CAediting_677464	chr9_15165284_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7974	15165282	15165288	7mer-m8	15165281	15165303	144.00	-18.92
CAediting_677465	chr9_15165300_-	ENSG00000155158.19	ENST00000512701	hsa-miR-548ao-3p	15165296	15165302	7mer-m8	15165295	15165315	154.00	-17.91
CAediting_677467	chr9_15165321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3940-3p	15165317	15165323	7mer-m8	15165316	15165337	143.00	-21.15
CAediting_677468	chr9_15167066_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3156-3p	15167064	15167070	7mer-m8	15167063	15167083	145.00	-14.20
CAediting_677468	chr9_15167066_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3156-3p	15167064	15167070	7mer-m8	15167063	15167083	145.00	-14.20
CAediting_677468	chr9_15167066_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4433a-5p	15167063	15167069	7mer-m8	15167062	15167083	143.00	-17.98
CAediting_677468	chr9_15167066_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6777-3p	15167066	15167072	7mer-m8	15167065	15167088	144.00	-21.97
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-10a-5p	15167068	15167074	7mer-m8	15167067	15167088	141.00	-18.32
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-10b-5p	15167068	15167074	7mer-m8	15167067	15167089	140.00	-20.54
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-339-5p	15167069	15167075	7mer-m8	15167068	15167090	147.00	-21.05
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3620-3p	15167066	15167073	8mer-1a	15167066	15167088	147.00	-20.31
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6784-3p	15167064	15167071	8mer-1a	15167064	15167086	143.00	-20.07
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6862-3p	15167064	15167071	8mer-1a	15167064	15167087	158.00	-21.47
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6862-3p	15167064	15167071	8mer-1a	15167064	15167087	158.00	-21.47
CAediting_677473	chr9_15167094_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4304	15167094	15167100	7mer-m8	15167093	15167110	141.00	-16.06
CAediting_677477	chr9_15167105_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4695-3p	15167099	15167106	8mer-1a	15167099	15167122	154.00	-24.60
CAediting_677477	chr9_15167105_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6787-3p	15167102	15167109	8mer-1a	15167102	15167124	154.00	-23.77
CAediting_677481	chr9_15167120_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4323	15167115	15167122	8mer-1a	15167115	15167133	145.00	-16.77
CAediting_677481	chr9_15167120_-	ENSG00000155158.19	ENST00000512701	hsa-miR-5699-5p	15167117	15167123	7mer-m8	15167116	15167137	140.00	-16.33
CAediting_677482	chr9_15167126_-	ENSG00000155158.19	ENST00000512701	hsa-miR-331-3p	15167125	15167131	7mer-m8	15167124	15167144	146.00	-21.34
CAediting_677482	chr9_15167126_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4292	15167126	15167132	7mer-m8	15167125	15167142	140.00	-21.45
CAediting_677482	chr9_15167126_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6771-3p	15167122	15167128	7mer-m8	15167121	15167141	150.00	-22.70
CAediting_677482	chr9_15167126_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6791-5p	15167126	15167132	7mer-m8	15167125	15167146	157.00	-30.60
CAediting_677486	chr9_15167156_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6778-3p	15167155	15167161	7mer-m8	15167154	15167174	146.00	-17.46
CAediting_677486	chr9_15167156_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6791-3p	15167155	15167160	6mer	15167154	15167174	142.00	-20.88
CAediting_677486	chr9_15167156_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7109-3p	15167152	15167159	8mer-1a	15167152	15167172	147.00	-15.95
CAediting_677493	chr9_15167201_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6075	15167197	15167203	7mer-m8	15167196	15167216	140.00	-16.74
CAediting_677499	chr9_15167238_-	ENSG00000155158.19	ENST00000512701	hsa-miR-12125	15167238	15167244	7mer-m8	15167237	15167261	142.00	-14.92
CAediting_677499	chr9_15167238_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3155a	15167234	15167240	7mer-m8	15167233	15167252	153.00	-19.04
CAediting_677499	chr9_15167238_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3155b	15167234	15167240	7mer-m8	15167233	15167249	153.00	-19.04
CAediting_677499	chr9_15167238_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4438	15167233	15167239	7mer-m8	15167232	15167252	141.00	-11.80
CAediting_677499	chr9_15167238_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6822-3p	15167236	15167241	6mer	15167235	15167258	146.00	-24.53
CAediting_677505	chr9_15167298_-	ENSG00000155158.19	ENST00000512701	hsa-miR-514a-5p	15167295	15167301	7mer-m8	15167294	15167316	140.00	-17.05
CAediting_677505	chr9_15167298_-	ENSG00000155158.19	ENST00000512701	hsa-miR-514a-5p	15167295	15167301	7mer-m8	15167294	15167316	140.00	-17.05
CAediting_677505	chr9_15167298_-	ENSG00000155158.19	ENST00000512701	hsa-miR-514a-5p	15167295	15167301	7mer-m8	15167294	15167316	140.00	-17.05
CAediting_677508	chr9_15167314_-	ENSG00000155158.19	ENST00000512701	hsa-miR-148a-5p	15167309	15167315	7mer-m8	15167308	15167329	148.00	-13.80
CAediting_677508	chr9_15167314_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3168	15167310	15167316	7mer-m8	15167309	15167325	142.00	-9.60
CAediting_677512	chr9_15167339_-	ENSG00000155158.19	ENST00000512701	hsa-miR-324-3p	15167336	15167342	7mer-m8	15167335	15167355	148.00	-19.70
CAediting_677512	chr9_15167339_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6890-3p	15167337	15167343	7mer-m8	15167336	15167353	144.00	-21.92
CAediting_677514	chr9_15167487_-	ENSG00000155158.19	ENST00000512701	hsa-miR-662	15167486	15167491	6mer	15167485	15167507	153.00	-32.51
CAediting_677514	chr9_15167487_-	ENSG00000155158.19	ENST00000512701	hsa-miR-663b	15167482	15167488	7mer-m8	15167481	15167504	149.00	-31.22
CAediting_677520	chr9_15167510_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6771-5p	15167508	15167515	8mer-1a	15167508	15167531	171.00	-34.26
CAediting_677521	chr9_15167542_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6771-5p	15167541	15167547	7mer-m8	15167540	15167560	154.00	-28.39
CAediting_677523	chr9_15167587_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6509-3p	15167585	15167590	6mer	15167584	15167605	144.00	-15.26
CAediting_677528	chr9_15167640_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3614-5p	15167640	15167646	7mer-m8	15167639	15167662	152.00	-25.27
CAediting_677528	chr9_15167640_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4691-3p	15167636	15167642	7mer-m8	15167635	15167662	150.00	-26.36
CAediting_677529	chr9_15167643_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6852-5p	15167642	15167647	6mer	15167641	15167660	149.00	-26.62
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6771-5p	15167643	15167649	7mer-m8	15167642	15167661	160.00	-34.33
CAediting_677532	chr9_15167665_-	ENSG00000155158.19	ENST00000512701	hsa-miR-146a-5p	15167660	15167666	7mer-m8	15167659	15167681	151.00	-22.31
CAediting_677532	chr9_15167665_-	ENSG00000155158.19	ENST00000512701	hsa-miR-146b-5p	15167660	15167666	7mer-m8	15167659	15167681	145.00	-15.82
CAediting_677532	chr9_15167665_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7153-5p	15167660	15167666	7mer-m8	15167659	15167682	152.00	-22.00
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-10a-5p	15167743	15167749	7mer-m8	15167742	15167762	142.00	-15.77
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-10b-5p	15167743	15167749	7mer-m8	15167742	15167764	149.00	-15.32
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-339-5p	15167744	15167750	7mer-m8	15167743	15167764	151.00	-17.76
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4421	15167745	15167751	7mer-m8	15167744	15167764	152.00	-13.64
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-5699-3p	15167745	15167751	7mer-m8	15167744	15167765	141.00	-16.39
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6732-3p	15167742	15167748	7mer-m8	15167741	15167762	151.00	-16.79
CAediting_677546	chr9_15167747_-	ENSG00000155158.19	ENST00000512701	hsa-miR-340-3p	15167745	15167752	8mer-1a	15167745	15167766	164.00	-20.14
CAediting_677546	chr9_15167747_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6827-3p	15167745	15167752	8mer-1a	15167745	15167765	140.00	-14.67
CAediting_677547	chr9_15167751_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4433b-5p	15167747	15167753	7mer-m8	15167746	15167766	140.00	-10.81
CAediting_677548	chr9_15168623_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3190-5p	15168618	15168624	7mer-m8	15168617	15168635	152.00	-22.63
CAediting_677548	chr9_15168623_-	ENSG00000155158.19	ENST00000512701	hsa-miR-548s	15168619	15168625	7mer-m8	15168618	15168640	149.00	-13.99
CAediting_677550	chr9_15168690_-	ENSG00000155158.19	ENST00000512701	hsa-miR-17-3p	15168687	15168693	7mer-m8	15168686	15168708	154.00	-20.36
CAediting_677551	chr9_15168700_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4691-3p	15168696	15168702	7mer-m8	15168695	15168722	150.00	-26.36
CAediting_677552	chr9_15168703_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1247-3p	15168702	15168708	7mer-m8	15168701	15168723	160.00	-27.57
CAediting_677556	chr9_15168786_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3940-3p	15168782	15168788	7mer-m8	15168781	15168802	151.00	-22.47
CAediting_677513	chr9_15167340_-	ENSG00000155158.19	ENST00000512701	hsa-miR-181c-3p	15167335	15167341	7mer-m8	15167334	15167355	146.00	-15.62
CAediting_677513	chr9_15167340_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6785-3p	15167337	15167343	7mer-m8	15167336	15167354	145.00	-16.49

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_677509	chr9_15167320_-	ENSG00000155158.19	ENST00000512701	hsa-miR-10399-5p	15167319	15167325	7mer-m8	15167318	15167339	144	-10.39
CAediting_677510	chr9_15167321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-10399-5p	15167319	15167325	7mer-m8	15167318	15167339	144	-10.39
CAediting_677479	chr9_15167113_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1183	15167111	15167117	7mer-m8	15167110	15167136	140	-20.1
CAediting_677480	chr9_15167115_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1183	15167111	15167117	7mer-m8	15167110	15167136	140	-20.1
CAediting_677513	chr9_15167340_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1202	15167339	15167346	8mer-1a	15167339	15167359	143	-15.39
CAediting_677529	chr9_15167643_-	ENSG00000155158.19	ENST00000512701	hsa-miR-12126	15167640	15167647	8mer-1a	15167640	15167663	147	-13.23
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-12126	15167640	15167647	8mer-1a	15167640	15167663	147	-13.23
CAediting_677463	chr9_15165239_-	ENSG00000155158.19	ENST00000512701	hsa-miR-12126	15165235	15165242	8mer-1a	15165235	15165258	155	-17.04
CAediting_677556	chr9_15168786_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1262	15168786	15168792	7mer-m8	15168785	15168806	140	-15.41
CAediting_677500	chr9_15167245_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1304-3p	15167239	15167246	8mer-1a	15167239	15167262	155	-20.88
CAediting_677482	chr9_15167126_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1343-3p	15167126	15167132	7mer-m8	15167125	15167147	148	-21.71
CAediting_677483	chr9_15167129_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1343-3p	15167126	15167132	7mer-m8	15167125	15167147	148	-21.71
CAediting_677472	chr9_15167089_-	ENSG00000155158.19	ENST00000512701	hsa-miR-143-5p	15167088	15167094	7mer-m8	15167087	15167107	155	-18.95
CAediting_677494	chr9_15167204_-	ENSG00000155158.19	ENST00000512701	hsa-miR-153-5p	15167201	15167208	8mer-1a	15167201	15167222	148	-5.95
CAediting_677495	chr9_15167206_-	ENSG00000155158.19	ENST00000512701	hsa-miR-153-5p	15167201	15167208	8mer-1a	15167201	15167222	148	-5.95
CAediting_677496	chr9_15167207_-	ENSG00000155158.19	ENST00000512701	hsa-miR-153-5p	15167201	15167208	8mer-1a	15167201	15167222	148	-5.95
CAediting_677549	chr9_15168688_-	ENSG00000155158.19	ENST00000512701	hsa-miR-20b-3p	15168687	15168693	7mer-m8	15168686	15168708	153	-18.18
CAediting_677550	chr9_15168690_-	ENSG00000155158.19	ENST00000512701	hsa-miR-20b-3p	15168687	15168693	7mer-m8	15168686	15168708	153	-18.18
CAediting_677532	chr9_15167665_-	ENSG00000155158.19	ENST00000512701	hsa-miR-219b-3p	15167662	15167668	7mer-m8	15167661	15167681	153	-15.53
CAediting_677533	chr9_15167666_-	ENSG00000155158.19	ENST00000512701	hsa-miR-219b-3p	15167662	15167668	7mer-m8	15167661	15167681	153	-15.53
CAediting_677532	chr9_15167665_-	ENSG00000155158.19	ENST00000512701	hsa-miR-302f	15167663	15167669	7mer-m8	15167662	15167678	147	-8.32
CAediting_677533	chr9_15167666_-	ENSG00000155158.19	ENST00000512701	hsa-miR-302f	15167663	15167669	7mer-m8	15167662	15167678	147	-8.32
CAediting_677548	chr9_15168623_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3064-5p	15168618	15168623	6mer	15168617	15168637	144	-24.26
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-30b-3p	15167643	15167650	8mer-1a	15167643	15167664	151	-15.38
CAediting_677520	chr9_15167510_-	ENSG00000155158.19	ENST00000512701	hsa-miR-30b-3p	15167509	15167516	8mer-1a	15167509	15167530	147	-15.99
CAediting_677540	chr9_15167701_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3135a	15167698	15167703	6mer	15167697	15167720	141	-18.68
CAediting_677539	chr9_15167695_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3174	15167693	15167698	6mer	15167692	15167716	141	-21.36
CAediting_677501	chr9_15167259_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3176	15167258	15167264	7mer-m8	15167257	15167275	152	-24.04
CAediting_677486	chr9_15167156_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3184-3p	15167152	15167159	8mer-1a	15167152	15167174	147	-13.53
CAediting_677487	chr9_15167158_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3184-3p	15167152	15167159	8mer-1a	15167152	15167174	147	-13.53
CAediting_677467	chr9_15165321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3187-5p	15165320	15165326	7mer-m8	15165319	15165340	154	-25.47
CAediting_677542	chr9_15167713_-	ENSG00000155158.19	ENST00000512701	hsa-miR-32-5p	15167712	15167718	7mer-m8	15167711	15167732	144	-11.12
CAediting_677543	chr9_15167714_-	ENSG00000155158.19	ENST00000512701	hsa-miR-32-5p	15167712	15167718	7mer-m8	15167711	15167732	144	-11.12
CAediting_677555	chr9_15168774_-	ENSG00000155158.19	ENST00000512701	hsa-miR-324-3p	15168770	15168776	7mer-m8	15168769	15168791	148	-24.16
CAediting_677503	chr9_15167273_-	ENSG00000155158.19	ENST00000512701	hsa-miR-331-3p	15167269	15167275	7mer-m8	15167268	15167288	153	-21.9
CAediting_677542	chr9_15167713_-	ENSG00000155158.19	ENST00000512701	hsa-miR-363-3p	15167712	15167718	7mer-m8	15167711	15167732	147	-17.57
CAediting_677543	chr9_15167714_-	ENSG00000155158.19	ENST00000512701	hsa-miR-363-3p	15167712	15167718	7mer-m8	15167711	15167732	147	-17.57
CAediting_677503	chr9_15167273_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3663-5p	15167272	15167277	6mer	15167271	15167292	146	-25.37
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3664-5p	15167743	15167749	7mer-m8	15167742	15167763	155	-16.53
CAediting_677546	chr9_15167747_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3664-5p	15167743	15167749	7mer-m8	15167742	15167763	155	-16.53
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3664-5p	15167068	15167074	7mer-m8	15167067	15167088	148	-14.14
CAediting_677470	chr9_15167072_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3664-5p	15167068	15167074	7mer-m8	15167067	15167088	148	-14.14
CAediting_677523	chr9_15167587_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3675-3p	15167582	15167588	7mer-m8	15167581	15167602	145	-12.58
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689a-3p	15167676	15167682	7mer-m8	15167675	15167695	146	-20.25
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689a-3p	15167643	15167650	8mer-1a	15167643	15167663	147	-18.72
CAediting_677520	chr9_15167510_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689a-3p	15167509	15167516	8mer-1a	15167509	15167530	141	-19.19
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689b-3p	15167676	15167682	7mer-m8	15167675	15167695	154	-23.63
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689b-3p	15167643	15167650	8mer-1a	15167643	15167663	147	-17.55
CAediting_677520	chr9_15167510_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689b-3p	15167509	15167516	8mer-1a	15167509	15167530	141	-20.2
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689c	15167676	15167682	7mer-m8	15167675	15167695	154	-23.63
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689c	15167643	15167650	8mer-1a	15167643	15167663	147	-17.55
CAediting_677520	chr9_15167510_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3689c	15167509	15167516	8mer-1a	15167509	15167530	141	-20.2
CAediting_677502	chr9_15167264_-	ENSG00000155158.19	ENST00000512701	hsa-miR-371a-5p	15167263	15167269	7mer-m8	15167262	15167281	146	-13.87
CAediting_677547	chr9_15167751_-	ENSG00000155158.19	ENST00000512701	hsa-miR-371b-5p	15167749	15167756	8mer-1a	15167749	15167770	152	-11.75
CAediting_677547	chr9_15167751_-	ENSG00000155158.19	ENST00000512701	hsa-miR-373-5p	15167749	15167756	8mer-1a	15167749	15167770	140	-8.35
CAediting_677537	chr9_15167689_-	ENSG00000155158.19	ENST00000512701	hsa-miR-377-5p	15167685	15167691	7mer-m8	15167684	15167705	148	-19.61
CAediting_677538	chr9_15167690_-	ENSG00000155158.19	ENST00000512701	hsa-miR-377-5p	15167685	15167691	7mer-m8	15167684	15167705	148	-19.61
CAediting_677464	chr9_15165284_-	ENSG00000155158.19	ENST00000512701	hsa-miR-377-5p	15165280	15165286	7mer-m8	15165279	15165300	147	-18.57
CAediting_677501	chr9_15167259_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3922-3p	15167258	15167264	7mer-m8	15167257	15167278	147	-19.09
CAediting_677513	chr9_15167340_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3972	15167339	15167346	8mer-1a	15167339	15167360	147	-16.96
CAediting_677555	chr9_15168774_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4252	15168769	15168775	7mer-m8	15168768	15168788	149	-21.82
CAediting_677521	chr9_15167542_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4259	15167539	15167545	7mer-m8	15167538	15167560	155	-25.07
CAediting_677514	chr9_15167487_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4284	15167483	15167490	8mer-1a	15167483	15167500	143	-15.61
CAediting_677458	chr9_15165081_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4284	15165077	15165084	8mer-1a	15165077	15165094	143	-15.61
CAediting_677459	chr9_15165155_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4293	15165151	15165157	7mer-m8	15165150	15165166	146	-21.19
CAediting_677512	chr9_15167339_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4317	15167337	15167343	7mer-m8	15167336	15167352	150	-15.69
CAediting_677513	chr9_15167340_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4317	15167337	15167343	7mer-m8	15167336	15167352	150	-15.69
CAediting_677461	chr9_15165207_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4455	15165204	15165210	7mer-m8	15165203	15165218	142	-14.55
CAediting_677553	chr9_15168712_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4478	15168708	15168714	7mer-m8	15168707	15168722	149	-25.05
CAediting_677531	chr9_15167652_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4478	15167648	15167654	7mer-m8	15167647	15167662	149	-25.05
CAediting_677522	chr9_15167561_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4494	15167556	15167562	7mer-m8	15167555	15167574	145	-21.96
CAediting_677522	chr9_15167561_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4499	15167557	15167563	7mer-m8	15167556	15167572	140	-12.18
CAediting_677483	chr9_15167129_-	ENSG00000155158.19	ENST00000512701	hsa-miR-450b-3p	15167129	15167135	7mer-m8	15167128	15167150	146	-21.05
CAediting_677553	chr9_15168712_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4649-3p	15168711	15168717	7mer-m8	15168710	15168730	140	-14.11
CAediting_677531	chr9_15167652_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4649-3p	15167651	15167657	7mer-m8	15167650	15167670	140	-14.11
CAediting_677556	chr9_15168786_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4701-3p	15168786	15168792	7mer-m8	15168785	15168805	153	-22.36
CAediting_677500	chr9_15167245_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4742-3p	15167244	15167250	7mer-m8	15167243	15167268	154	-19.91
CAediting_677491	chr9_15167175_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4759	15167169	15167176	8mer-1a	15167169	15167189	149	-13.46
CAediting_677548	chr9_15168623_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4794	15168618	15168624	7mer-m8	15168617	15168639	151	-21.79
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-490-3p	15167672	15167678	7mer-m8	15167671	15167693	146	-17.33
CAediting_677544	chr9_15167719_-	ENSG00000155158.19	ENST00000512701	hsa-miR-508-5p	15167717	15167723	7mer-m8	15167716	15167740	152	-24.34
CAediting_677541	chr9_15167705_-	ENSG00000155158.19	ENST00000512701	hsa-miR-517a-3p	15167705	15167711	7mer-m8	15167704	15167728	147	-20.18
CAediting_677541	chr9_15167705_-	ENSG00000155158.19	ENST00000512701	hsa-miR-517b-3p	15167705	15167711	7mer-m8	15167704	15167728	147	-20.18
CAediting_677541	chr9_15167705_-	ENSG00000155158.19	ENST00000512701	hsa-miR-517c-3p	15167705	15167711	7mer-m8	15167704	15167728	143	-18.58
CAediting_677467	chr9_15165321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-5189-5p	15165320	15165326	7mer-m8	15165319	15165343	151	-22.88
CAediting_677551	chr9_15168700_-	ENSG00000155158.19	ENST00000512701	hsa-miR-5690	15168696	15168702	7mer-m8	15168695	15168715	145	-16.75
CAediting_677528	chr9_15167640_-	ENSG00000155158.19	ENST00000512701	hsa-miR-5690	15167636	15167642	7mer-m8	15167635	15167655	145	-16.74
CAediting_677473	chr9_15167094_-	ENSG00000155158.19	ENST00000512701	hsa-miR-5693	15167091	15167097	7mer-m8	15167090	15167110	146	-19.23
CAediting_677460	chr9_15165181_-	ENSG00000155158.19	ENST00000512701	hsa-miR-593-3p	15165175	15165181	7mer-1a	15165175	15165193	140	-19.02
CAediting_677537	chr9_15167689_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6086	15167685	15167691	7mer-m8	15167684	15167703	148	-20.48
CAediting_677538	chr9_15167690_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6086	15167685	15167691	7mer-m8	15167684	15167703	148	-20.48
CAediting_677467	chr9_15165321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-612	15165320	15165326	7mer-m8	15165319	15165343	150	-22.64
CAediting_677547	chr9_15167751_-	ENSG00000155158.19	ENST00000512701	hsa-miR-616-5p	15167749	15167756	8mer-1a	15167749	15167770	140	-5.71
CAediting_677483	chr9_15167129_-	ENSG00000155158.19	ENST00000512701	hsa-miR-619-5p	15167128	15167134	7mer-m8	15167127	15167147	153	-20.66
CAediting_677509	chr9_15167320_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6504-3p	15167319	15167325	7mer-m8	15167318	15167339	148	-14.48
CAediting_677510	chr9_15167321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6504-3p	15167319	15167325	7mer-m8	15167318	15167339	148	-14.48
CAediting_677483	chr9_15167129_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6506-5p	15167128	15167134	7mer-m8	15167127	15167148	150	-11.73
CAediting_677508	chr9_15167314_-	ENSG00000155158.19	ENST00000512701	hsa-miR-651-5p	15167313	15167320	8mer-1a	15167313	15167337	147	-12.99
CAediting_677544	chr9_15167719_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6512-3p	15167719	15167725	7mer-m8	15167718	15167739	144	-17.46
CAediting_677537	chr9_15167689_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6516-5p	15167689	15167695	7mer-m8	15167688	15167713	147	-15.16
CAediting_677538	chr9_15167690_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6516-5p	15167689	15167695	7mer-m8	15167688	15167713	147	-15.16
CAediting_677556	chr9_15168786_-	ENSG00000155158.19	ENST00000512701	hsa-miR-661	15168783	15168789	7mer-m8	15168782	15168805	150	-22.37
CAediting_677467	chr9_15165321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-661	15165318	15165324	7mer-m8	15165317	15165340	143	-19.48
CAediting_677548	chr9_15168623_-	ENSG00000155158.19	ENST00000512701	hsa-miR-664a-5p	15168618	15168624	7mer-m8	15168617	15168640	141	-16.08
CAediting_677502	chr9_15167264_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6715b-3p	15167264	15167270	7mer-m8	15167263	15167283	149	-20.35
CAediting_677549	chr9_15168688_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6720-3p	15168683	15168689	7mer-m8	15168682	15168703	152	-20.67
CAediting_677544	chr9_15167719_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6720-5p	15167719	15167725	7mer-m8	15167718	15167740	151	-25.64
CAediting_677556	chr9_15168786_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6736-5p	15168786	15168792	7mer-m8	15168785	15168811	147	-25.75
CAediting_677471	chr9_15167079_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6737-5p	15167079	15167085	7mer-m8	15167078	15167098	155	-27.53
CAediting_677556	chr9_15168786_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6742-3p	15168784	15168790	7mer-m8	15168783	15168802	140	-13.49
CAediting_677471	chr9_15167079_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6765-3p	15167074	15167081	8mer-1a	15167074	15167095	144	-20.8
CAediting_677553	chr9_15168712_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6765-5p	15168712	15168717	6mer	15168711	15168732	151	-30.57
CAediting_677470	chr9_15167072_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6773-3p	15167070	15167077	8mer-1a	15167070	15167091	146	-13.42
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6779-5p	15167676	15167682	7mer-m8	15167675	15167693	152	-23.44
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6779-5p	15167643	15167650	8mer-1a	15167643	15167661	148	-22.58
CAediting_677520	chr9_15167510_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6779-5p	15167509	15167516	8mer-1a	15167509	15167528	142	-21.83
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6780a-5p	15167676	15167682	7mer-m8	15167675	15167699	147	-24.53
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6780a-5p	15167643	15167650	8mer-1a	15167643	15167666	152	-25.37
CAediting_677482	chr9_15167126_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6783-3p	15167126	15167132	7mer-m8	15167125	15167146	143	-16.6
CAediting_677483	chr9_15167129_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6783-3p	15167126	15167132	7mer-m8	15167125	15167146	143	-16.6
CAediting_677468	chr9_15167066_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6794-3p	15167066	15167072	7mer-m8	15167065	15167083	148	-20.39
CAediting_677469	chr9_15167070_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6794-3p	15167066	15167072	7mer-m8	15167065	15167083	148	-20.39
CAediting_677511	chr9_15167329_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6807-5p	15167329	15167335	7mer-m8	15167328	15167349	140	-16.3
CAediting_677471	chr9_15167079_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6812-5p	15167079	15167085	7mer-m8	15167078	15167102	155	-23.43
CAediting_677536	chr9_15167676_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6852-5p	15167674	15167679	6mer	15167673	15167693	140	-22.29
CAediting_677471	chr9_15167079_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6852-5p	15167077	15167083	7mer-m8	15167076	15167094	148	-20.85
CAediting_677522	chr9_15167561_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6855-3p	15167558	15167564	7mer-m8	15167557	15167578	149	-17.57
CAediting_677467	chr9_15165321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6860	15165320	15165326	7mer-m8	15165319	15165340	141	-16.19
CAediting_677486	chr9_15167156_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6867-3p	15167156	15167162	7mer-m8	15167155	15167175	140	-13.09
CAediting_677487	chr9_15167158_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6867-3p	15167156	15167162	7mer-m8	15167155	15167175	140	-13.09
CAediting_677501	chr9_15167259_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6878-3p	15167259	15167265	7mer-m8	15167258	15167281	146	-26.45
CAediting_677502	chr9_15167264_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6878-3p	15167259	15167265	7mer-m8	15167258	15167281	146	-26.45
CAediting_677545	chr9_15167745_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6888-3p	15167745	15167751	7mer-m8	15167744	15167764	151	-14.55
CAediting_677546	chr9_15167747_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6888-3p	15167745	15167751	7mer-m8	15167744	15167764	151	-14.55
CAediting_677510	chr9_15167321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7151-3p	15167320	15167327	8mer-1a	15167320	15167340	144	-16.51
CAediting_677503	chr9_15167273_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7152-3p	15167272	15167278	7mer-m8	15167271	15167290	143	-21.04
CAediting_677471	chr9_15167079_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7155-5p	15167078	15167084	7mer-m8	15167077	15167095	143	-17.88
CAediting_677553	chr9_15168712_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7160-5p	15168710	15168716	7mer-m8	15168709	15168728	149	-18.69
CAediting_677531	chr9_15167652_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7160-5p	15167650	15167656	7mer-m8	15167649	15167669	147	-20.02
CAediting_677544	chr9_15167719_-	ENSG00000155158.19	ENST00000512701	hsa-miR-766-3p	15167718	15167724	7mer-m8	15167717	15167738	145	-20.71
CAediting_677483	chr9_15167129_-	ENSG00000155158.19	ENST00000512701	hsa-miR-769-3p	15167129	15167135	7mer-m8	15167128	15167150	140	-20.82
CAediting_677492	chr9_15167186_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7703	15167181	15167187	7mer-m8	15167180	15167202	150	-16.65
CAediting_677471	chr9_15167079_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7851-3p	15167076	15167082	7mer-m8	15167075	15167098	151	-23.07
CAediting_677517	chr9_15167499_-	ENSG00000155158.19	ENST00000512701	hsa-miR-7977	15167499	15167505	7mer-m8	15167498	15167515	140	-13.07
CAediting_677529	chr9_15167643_-	ENSG00000155158.19	ENST00000512701	hsa-miR-887-5p	15167643	15167649	7mer-m8	15167642	15167661	143	-19.73
CAediting_677530	chr9_15167644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-887-5p	15167643	15167649	7mer-m8	15167642	15167661	143	-19.73
CAediting_677521	chr9_15167542_-	ENSG00000155158.19	ENST00000512701	hsa-miR-887-5p	15167541	15167547	7mer-m8	15167540	15167562	146	-17.99
CAediting_677519	chr9_15167509_-	ENSG00000155158.19	ENST00000512701	hsa-miR-887-5p	15167508	15167515	8mer-1a	15167508	15167528	147	-13.98
CAediting_677520	chr9_15167510_-	ENSG00000155158.19	ENST00000512701	hsa-miR-887-5p	15167508	15167515	8mer-1a	15167508	15167528	147	-13.98
CAediting_677463	chr9_15165239_-	ENSG00000155158.19	ENST00000512701	hsa-miR-887-5p	15165238	15165244	7mer-m8	15165237	15165256	151	-24.36
CAediting_677542	chr9_15167713_-	ENSG00000155158.19	ENST00000512701	hsa-miR-92a-3p	15167712	15167718	7mer-m8	15167711	15167728	155	-25.51
CAediting_677543	chr9_15167714_-	ENSG00000155158.19	ENST00000512701	hsa-miR-92a-3p	15167712	15167718	7mer-m8	15167711	15167728	155	-25.51
CAediting_677542	chr9_15167713_-	ENSG00000155158.19	ENST00000512701	hsa-miR-92a-3p	15167712	15167718	7mer-m8	15167711	15167728	155	-25.51
CAediting_677543	chr9_15167714_-	ENSG00000155158.19	ENST00000512701	hsa-miR-92a-3p	15167712	15167718	7mer-m8	15167711	15167728	155	-25.51
CAediting_677467	chr9_15165321_-	ENSG00000155158.19	ENST00000512701	hsa-miR-939-3p	15165319	15165325	7mer-m8	15165318	15165338	140	-15.63

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000155158.19	ENST00000512701	hsa-miR-605-3p	15168273	15168280	8mer-1a	15168273	15168292	152	-12.18
CAediting_748296	chr10_51299626_+	ENSG00000155158.19	ENST00000512701	hsa-miR-605-3p	15167921	15167927	7mer-m8	15167920	15167941	160	-18.14
CAediting_980496	chr14_31014685_-	ENSG00000155158.19	ENST00000512701	hsa-miR-624-3p	15167058	15167064	7mer-m8	15167057	15167077	148	-13.46
CAediting_393	chr1_1167164_+	ENSG00000155158.19	ENST00000512701	hsa-miR-200b-3p	15164257	15164263	7mer-m8	15164256	15164277	144	-8.97
CAediting_688080	chr9_63819626_+	ENSG00000155158.19	ENST00000512701	hsa-miR-4477b	15171988	15171994	7mer-m8	15171987	15172008	147	-11.04
CAediting_688080	chr9_63819626_+	ENSG00000155158.19	ENST00000380850	hsa-miR-4477b	15171988	15171994	7mer-m8	15171987	15172008	147	-11.04
CAediting_688080	chr9_63819626_+	ENSG00000155158.19	ENST00000297615	hsa-miR-4477b	15171988	15171994	7mer-m8	15171987	15172008	147	-11.04
CAediting_688080	chr9_63819626_+	ENSG00000155158.19	ENST00000507285	hsa-miR-4477b	15171988	15171994	7mer-m8	15171987	15172008	147	-11.04
CAediting_688080	chr9_63819626_+	ENSG00000155158.19	ENST00000507993	hsa-miR-4477b	15171988	15171994	7mer-m8	15171987	15172008	147	-11.04
CAediting_1229414	chr17_67471546_+	ENSG00000155158.19	ENST00000512701	hsa-miR-548aa	15165489	15165496	8mer-1a	15165489	15165518	149	-11.71
CAediting_1229415	chr17_67471547_+	ENSG00000155158.19	ENST00000512701	hsa-miR-548aa	15168075	15168081	7mer-m8	15168074	15168098	155	-14.93
CAediting_1351755	chr19_40282625_-	ENSG00000155158.19	ENST00000512701	hsa-miR-641	15171133	15171139	7mer-m8	15171132	15171159	151	-17.13
CAediting_86358	chr1_109598906_+	ENSG00000155158.19	ENST00000512701	hsa-miR-197-5p	15167081	15167087	7mer-m8	15167080	15167100	166	-31.23
CAediting_117844	chr1_162342605_+	ENSG00000155158.19	ENST00000512701	hsa-miR-556-3p	15167247	15167253	7mer-m8	15167246	15167266	146	-14.1
CAediting_1399425	chr20_1392958_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6869-5p	15170316	15170322	7mer-m8	15170315	15170336	141	-20.19
CAediting_1399425	chr20_1392958_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6869-5p	15165845	15165852	8mer-1a	15165845	15165866	155	-23.35
CAediting_1399425	chr20_1392958_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6869-5p	15171027	15171033	7mer-m8	15171026	15171047	154	-24.1
CAediting_442554	chr5_154685830_+	ENSG00000155158.19	ENST00000512701	hsa-miR-1303	15164220	15164226	7mer-m8	15164219	15164241	147	-14.46
CAediting_524911	chr7_5495852_-	ENSG00000155158.19	ENST00000512701	hsa-miR-589-3p	15168232	15168238	7mer-m8	15168231	15168256	146	-16.8
CAediting_1351755	chr19_40282625_-	ENSG00000155158.19	ENST00000380850	hsa-miR-641	15171133	15171139	7mer-m8	15171132	15171159	151	-17.13
CAediting_1399425	chr20_1392958_-	ENSG00000155158.19	ENST00000380850	hsa-miR-6869-5p	15171027	15171033	7mer-m8	15171026	15171047	154	-24.1
CAediting_1351755	chr19_40282625_-	ENSG00000155158.19	ENST00000297615	hsa-miR-641	15171133	15171139	7mer-m8	15171132	15171159	151	-17.13
CAediting_1399425	chr20_1392958_-	ENSG00000155158.19	ENST00000297615	hsa-miR-6869-5p	15171027	15171033	7mer-m8	15171026	15171047	154	-24.1
CAediting_1229413	chr17_67471544_+	ENSG00000155158.19	ENST00000506891	hsa-miR-548aa	15249494	15249501	8mer-1a	15249494	15249520	143	-8.31
CAediting_1229414	chr17_67471546_+	ENSG00000155158.19	ENST00000506891	hsa-miR-548aa	15249631	15249637	7mer-m8	15249630	15249654	166	-19.2
CAediting_1229415	chr17_67471547_+	ENSG00000155158.19	ENST00000506891	hsa-miR-548aa	15249366	15249373	8mer-1a	15249366	15249391	141	-10.12
CAediting_580943	chr7_100356700_+	ENSG00000155158.19	ENST00000506891	hsa-miR-6840-3p	15249624	15249631	8mer-1a	15249624	15249645	140	-19.86
CAediting_468389	chr6_31355314_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6891-5p	15168742	15168747	6mer	15168738	15168756	153	-20.2
CAediting_468389	chr6_31355314_-	ENSG00000155158.19	ENST00000512701	hsa-miR-6891-5p	15168739	15168745	7mer-m8	15168738	15168756	153	-20.2
CAediting_1524209	chrX_134546392_-	ENSG00000155158.19	ENST00000512701	hsa-miR-503-5p	15166681	15166686	6mer	15166680	15166702	151	-26.51

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000155158.19	ENST00000512701	hsa-miR-1304-3p	15167239	15167246	8mer-1a	15167239	15167262	155	-20.88
CAediting_1160181	chr17_7017644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-195-3p	15171683	15171689	7mer-m8	15171682	15171703	146	-6.41
CAediting_1160181	chr17_7017644_-	ENSG00000155158.19	ENST00000512701	hsa-miR-195-3p	15164668	15164675	8mer-1a	15164668	15164689	140	-5.65
CAediting_86358	chr1_109598906_+	ENSG00000155158.19	ENST00000512701	hsa-miR-197-5p	15165846	15165853	8mer-1a	15165846	15165867	155	-19.99
CAediting_393	chr1_1167164_+	ENSG00000155158.19	ENST00000512701	hsa-miR-200b-3p	15171443	15171449	7mer-m8	15171442	15171463	150	-9.04
CAediting_393	chr1_1167164_+	ENSG00000155158.19	ENST00000512701	hsa-miR-200b-3p	15166047	15166052	6mer	15166046	15166067	147	-11.11
CAediting_1306324	chr19_13836464_-	ENSG00000155158.19	ENST00000512701	hsa-miR-27a-3p	15170902	15170908	7mer-m8	15170901	15170921	149	-12.95
CAediting_1306323	chr19_13836462_-	ENSG00000155158.19	ENST00000512701	hsa-miR-27a-3p	15170902	15170908	7mer-m8	15170901	15170921	149	-12.95
CAediting_1306324	chr19_13836464_-	ENSG00000155158.19	ENST00000512701	hsa-miR-27a-3p	15164014	15164021	8mer-1a	15164014	15164034	140	-13.29
CAediting_1306323	chr19_13836462_-	ENSG00000155158.19	ENST00000512701	hsa-miR-27a-3p	15164014	15164021	8mer-1a	15164014	15164034	140	-13.29
CAediting_1306324	chr19_13836464_-	ENSG00000155158.19	ENST00000512701	hsa-miR-27a-3p	15171139	15171145	7mer-m8	15171138	15171158	152	-15.27
CAediting_1306323	chr19_13836462_-	ENSG00000155158.19	ENST00000512701	hsa-miR-27a-3p	15171139	15171145	7mer-m8	15171138	15171158	152	-15.27
CAediting_1368054	chr19_46709310_-	ENSG00000155158.19	ENST00000512701	hsa-miR-320e	15170592	15170597	6mer	15170591	15170608	140	-16.46
CAediting_1368054	chr19_46709310_-	ENSG00000155158.19	ENST00000512701	hsa-miR-320e	15168525	15168531	7mer-m8	15168524	15168540	150	-14.74
CAediting_604450	chr7_133034877_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3654	15168225	15168232	8mer-1a	15168225	15168243	154	-20.39
CAediting_604450	chr7_133034877_-	ENSG00000155158.19	ENST00000512701	hsa-miR-3654	15166730	15166736	7mer-m8	15166729	15166747	153	-22.01
CAediting_688080	chr9_63819626_+	ENSG00000155158.19	ENST00000512701	hsa-miR-4477b	15169440	15169446	7mer-m8	15169439	15169460	142	-7.67
CAediting_688081	chr9_63819627_+	ENSG00000155158.19	ENST00000512701	hsa-miR-4477b	15169440	15169446	7mer-m8	15169439	15169460	142	-7.67
CAediting_396018	chr5_1062918_-	ENSG00000155158.19	ENST00000512701	hsa-miR-4635	15170240	15170246	7mer-m8	15170239	15170260	154	-19.14
CAediting_1524209	chrX_134546392_-	ENSG00000155158.19	ENST00000512701	hsa-miR-503-5p	15171221	15171226	6mer	15171220	15171242	150	-20.36
CAediting_228905	chr2_188297554_+	ENSG00000155158.19	ENST00000512701	hsa-miR-561-3p	15167308	15167314	7mer-m8	15167307	15167329	148	-9.49
CAediting_228905	chr2_188297554_+	ENSG00000155158.19	ENST00000512701	hsa-miR-561-3p	15165949	15165955	7mer-m8	15165948	15165969	140	-10.78
CAediting_524911	chr7_5495852_-	ENSG00000155158.19	ENST00000512701	hsa-miR-589-3p	15169572	15169578	7mer-m8	15169571	15169595	149	-18.16
CAediting_524911	chr7_5495852_-	ENSG00000155158.19	ENST00000512701	hsa-miR-589-3p	15164278	15164284	7mer-m8	15164277	15164300	140	-9.46
CAediting_748296	chr10_51299626_+	ENSG00000155158.19	ENST00000512701	hsa-miR-605-3p	15165626	15165632	7mer-m8	15165625	15165646	144	-12.74
CAediting_748296	chr10_51299626_+	ENSG00000155158.19	ENST00000512701	hsa-miR-605-3p	15165596	15165601	6mer	15165595	15165616	140	-24.16

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for TTC39B

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for TTC39B

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
HNSC	CAediting_677474	chr9_15167099_-	0.000439990302751953	0.478497822469553	.	.	.	.
STAD	CAediting_677474	chr9_15167099_-	1.89986105890851e-06	0.291529105393284	.	.	.	.
THCA	CAediting_677474	chr9_15167099_-	0.0353253612439659	0.184070452945453	.	.	.	.
UCEC	CAediting_677474	chr9_15167099_-	8.85197250316849e-05	0.340750681060852	.	.	.	.
ESCA	CAediting_677474	chr9_15167099_-	0.0115241349646341	0.21766281433868	.	.	.	.
OV	CAediting_677474	chr9_15167099_-	0.0270024032014065	0.183047771423265	.	.	.	.
STAD	CAediting_677476	chr9_15167104_-	2.6785335980551e-06	0.479065244943402	.	.	0.0121041605324433	0.26794037884425
STAD	CAediting_677479	chr9_15167113_-	0.0179284084312577	0.213151124345973	.	.	.	.
CESC	CAediting_677480	chr9_15167115_-	0.00267525325223454	0.281143963876404	.	.	.	.
THCA	CAediting_677480	chr9_15167115_-	0.00347891798365742	0.212647813424311	.	.	.	.
UCEC	CAediting_677480	chr9_15167115_-	0.0464408671232	0.152064727498106	.	.	.	.
BLCA	CAediting_677483	chr9_15167129_-	0.0098257197270338	0.288870026318775	.	.	0.0378857722964348	0.234053770371632
BRCA	CAediting_677483	chr9_15167129_-	0.000136842562493883	0.255472873031685	0.0114968124286898	0.170886760833062	.	.
CESC	CAediting_677483	chr9_15167129_-	0.00157408149387826	0.363462020850071	.	.	.	.
LUAD	CAediting_677483	chr9_15167129_-	0.0126355826898076	0.214134320675932	.	.	.	.
STAD	CAediting_677483	chr9_15167129_-	.	.	0.000226233808319704	0.27533418422129	.	.
THCA	CAediting_677483	chr9_15167129_-	0.000489831314973597	0.26686952425884	.	.	.	.
KIRC	CAediting_677483	chr9_15167129_-	0.00108853241625826	0.262460908412813	.	.	.	.
UCEC	CAediting_677483	chr9_15167129_-	0.00344063053618185	0.374875142405055	.	.	.	.
ESCA	CAediting_677483	chr9_15167129_-	.	.	1.33212750205577e-05	0.441398211192065	.	.
OV	CAediting_677483	chr9_15167129_-	.	.	.	.	0.0261139147712122	0.225865910210478
BLCA	CAediting_677488	chr9_15167162_-	3.75686960403487e-05	0.254609237460117	0.00551760282548544	0.172984037789839	.	.
LGG	CAediting_677488	chr9_15167162_-	.	.	2.06616146776922e-07	0.449466891814167	.	.
BRCA	CAediting_677488	chr9_15167162_-	3.99132155378722e-17	0.310220089668104	.	.	.	.
CESC	CAediting_677488	chr9_15167162_-	8.28783583533506e-09	0.353004742613405	.	.	0.0399950433223698	0.12947588103231
LUAD	CAediting_677488	chr9_15167162_-	1.19603506054232e-11	0.334081907365927	.	.	.	.
COAD	CAediting_677488	chr9_15167162_-	1.63564368811667e-12	0.408293512582349	0.000771605353079687	0.201254222505347	.	.
LUSC	CAediting_677488	chr9_15167162_-	1.01115147857014e-06	0.271800118189336	0.0161670482427966	0.135642017324929	.	.
PRAD	CAediting_677488	chr9_15167162_-	0.00102956455749693	0.227622237927726	.	.	.	.
HNSC	CAediting_677488	chr9_15167162_-	5.07173635398386e-06	0.242110806825931	0.00265545567995706	0.160847757104304	.	.
STAD	CAediting_677488	chr9_15167162_-	5.68171986725213e-05	0.230252044927915	.	.	.	.
THCA	CAediting_677488	chr9_15167162_-	1.87814510171365e-11	0.317457817865216	.	.	.	.
KIRC	CAediting_677488	chr9_15167162_-	2.88605768039458e-08	0.270374566684099	.	.	.	.
UCEC	CAediting_677488	chr9_15167162_-	1.08622446811805e-15	0.486896464916015	0.00143023761267625	0.204700346297287	.	.
KIRP	CAediting_677488	chr9_15167162_-	0.000244635918965809	0.258509790243162	0.00903440372443518	0.185570688966789	.	.
ESCA	CAediting_677488	chr9_15167162_-	0.000141681827325586	0.301906078719496	.	.	.	.
OV	CAediting_677488	chr9_15167162_-	0.00242717560955674	0.22345767062857	.	.	.	.
PAAD	CAediting_677488	chr9_15167162_-	0.000383691612061011	0.287179693315784	0.000783857986654391	0.272211563250205	.	.
PCPG	CAediting_677488	chr9_15167162_-	0.0052682425122341	0.296661519307835	.	.	.	.
SKCM	CAediting_677488	chr9_15167162_-	4.89079239130874e-05	0.465521369195332	0.000547512333084068	0.402724578264772	.	.
READ	CAediting_677488	chr9_15167162_-	2.96899753212574e-05	0.434106761946314	.	.	.	.
SARC	CAediting_677488	chr9_15167162_-	7.43723541928434e-05	0.368569752918148	0.00165778198033535	0.296527713815346	.	.
TGCT	CAediting_677488	chr9_15167162_-	0.00602674002385739	0.375906388962913	.	.	.	.
THYM	CAediting_677488	chr9_15167162_-	.	.	0.0119047563274654	0.299065537416145	.	.
BRCA	CAediting_677489	chr9_15167165_-	0.00762020207787747	0.171153104162569	.	.	.	.
KIRC	CAediting_677489	chr9_15167165_-	0.0052960796561446	0.259531805188186	0.00685273084301939	0.251923309691292	.	.
BLCA	CAediting_677491	chr9_15167175_-	0.0103729372528939	0.19168132279431	.	.	.	.
LGG	CAediting_677491	chr9_15167175_-	.	.	2.47290699655715e-08	0.546754698452952	0.00142800458094494	0.33123027580381
BRCA	CAediting_677491	chr9_15167175_-	9.19658310232548e-24	0.401518528397205	.	.	.	.
LIHC	CAediting_677491	chr9_15167175_-	0.0112798952101702	0.291112978681195	.	.	.	.
CESC	CAediting_677491	chr9_15167175_-	2.0913596302449e-06	0.346020376347145	.	.	.	.
LUAD	CAediting_677491	chr9_15167175_-	5.07833863167403e-09	0.322763553046551	.	.	.	.
COAD	CAediting_677491	chr9_15167175_-	8.01121673175661e-08	0.434719900174807	.	.	.	.
LUSC	CAediting_677491	chr9_15167175_-	2.17037833881064e-06	0.30775178618749	.	.	0.00365387113505329	0.19175827776463
HNSC	CAediting_677491	chr9_15167175_-	0.00745632400707039	0.176779404306233	0.000661953875213994	0.223855038420321	.	.
STAD	CAediting_677491	chr9_15167175_-	2.95711658642396e-05	0.254981346211134	.	.	.	.
THCA	CAediting_677491	chr9_15167175_-	6.17280002424427e-13	0.395479742319331	.	.	.	.
KIRC	CAediting_677491	chr9_15167175_-	3.53289673083847e-10	0.333158967465364	0.0167566765030681	0.130229253480124	.	.
UCEC	CAediting_677491	chr9_15167175_-	1.26821545689265e-07	0.416506732525838	0.00869693501436794	0.214247883311301	.	.
KIRP	CAediting_677491	chr9_15167175_-	5.79414092782495e-05	0.38028816500911	.	.	.	.
ESCA	CAediting_677491	chr9_15167175_-	0.00359807512472415	0.245371225290136	0.0273442283701943	0.187191450813365	.	.
OV	CAediting_677491	chr9_15167175_-	0.00251711194591025	0.228971349198817	.	.	.	.
PAAD	CAediting_677491	chr9_15167175_-	0.0014611825309481	0.28619309986642	0.0413361356592079	0.185778061070175	.	.
PCPG	CAediting_677491	chr9_15167175_-	0.00271886850658288	0.334983484403231	.	.	.	.
SARC	CAediting_677491	chr9_15167175_-	.	.	3.34306345153478e-06	0.52334873017183	.	.
THYM	CAediting_677491	chr9_15167175_-	0.00184670062180154	0.397075436145775	.	.	.	.
STAD	CAediting_677500	chr9_15167245_-	0.0150214125969554	0.281742479614194	.	.	.	.
BRCA	CAediting_677507	chr9_15167303_-	3.98832993814156e-08	0.3807777906353	.	.	.	.
STAD	CAediting_677507	chr9_15167303_-	0.0187513421990216	0.293097108138659	.	.	.	.
KIRC	CAediting_677507	chr9_15167303_-	0.0118418642194751	0.289235109061663	.	.	.	.
OV	CAediting_677507	chr9_15167303_-	0.00148666581640988	0.355967625661304	.	.	.	.
BLCA	CAediting_677511	chr9_15167329_-	1.39598009632401e-06	0.393381666395626	.	.	.	.
BRCA	CAediting_677511	chr9_15167329_-	2.5083273239397e-12	0.409964759089237	.	.	.	.
CESC	CAediting_677511	chr9_15167329_-	3.18713310092941e-07	0.364325277867017	.	.	0.0136039947154964	0.180656433825933
LUAD	CAediting_677511	chr9_15167329_-	3.14579447860059e-06	0.291017004836716	.	.	.	.
COAD	CAediting_677511	chr9_15167329_-	3.92819508230529e-08	0.41404295928367	.	.	.	.
LUSC	CAediting_677511	chr9_15167329_-	0.000262448352413731	0.292908743058999	.	.	.	.
PRAD	CAediting_677511	chr9_15167329_-	0.000895979290133389	0.330273196248743	.	.	.	.
HNSC	CAediting_677511	chr9_15167329_-	0.0145731574844187	0.160552432393805	.	.	.	.
STAD	CAediting_677511	chr9_15167329_-	8.53782093676466e-08	0.307616669060582	.	.	.	.
THCA	CAediting_677511	chr9_15167329_-	1.10471214289169e-05	0.235542099316674	.	.	.	.
KIRC	CAediting_677511	chr9_15167329_-	0.0193192072453002	0.177724866068302	.	.	.	.
UCEC	CAediting_677511	chr9_15167329_-	0.00163447483198457	0.359916963581369	.	.	.	.
ESCA	CAediting_677511	chr9_15167329_-	3.90201197385434e-05	0.324044282560716	.	.	.	.
OV	CAediting_677511	chr9_15167329_-	0.000598182073599216	0.250032136621171	.	.	.	.
PAAD	CAediting_677511	chr9_15167329_-	0.0218775993687928	0.229071302916652	.	.	.	.
READ	CAediting_677511	chr9_15167329_-	0.0176904969249575	0.313173463561313	.	.	.	.
SARC	CAediting_677511	chr9_15167329_-	0.00619673303792332	0.358361542151809	.	.	.	.
BRCA	CAediting_677516	chr9_15167496_-	6.39812146327669e-11	0.566079388126593	.	.	.	.
STAD	CAediting_677516	chr9_15167496_-	8.18032211300819e-07	0.356852053541056	.	.	.	.
KIRC	CAediting_677516	chr9_15167496_-	0.0276106906402106	0.259673265351195	.	.	.	.
ESCA	CAediting_677516	chr9_15167496_-	0.000430462961793585	0.317689529348635	.	.	.	.
OV	CAediting_677516	chr9_15167496_-	0.000230103232306214	0.341366786615813	.	.	.	.
BRCA	CAediting_677518	chr9_15167508_-	6.386265726712e-12	0.444452293972302	.	.	.	.
CESC	CAediting_677518	chr9_15167508_-	0.000389510077881236	0.450335559912704	.	.	.	.
HNSC	CAediting_677518	chr9_15167508_-	1.73768736599941e-05	0.407744072334729	.	.	.	.
STAD	CAediting_677518	chr9_15167508_-	2.12480475212429e-05	0.274619039948653	.	.	.	.
THCA	CAediting_677518	chr9_15167508_-	0.00684213885264195	0.187437102264018	.	.	.	.
KIRC	CAediting_677518	chr9_15167508_-	1.20143054235238e-07	0.371640554514777	.	.	.	.
ESCA	CAediting_677518	chr9_15167508_-	0.00181591926092215	0.251794228365394	.	.	.	.
OV	CAediting_677518	chr9_15167508_-	0.00188495795767826	0.260442467972448	.	.	.	.
BRCA	CAediting_677519	chr9_15167509_-	1.33980230593454e-06	0.357854090582156	.	.	.	.
HNSC	CAediting_677519	chr9_15167509_-	0.00984540111668263	0.330754428729344	.	.	.	.
STAD	CAediting_677519	chr9_15167509_-	3.47072602039704e-05	0.286245764217642	.	.	.	.
THCA	CAediting_677519	chr9_15167509_-	0.00746333026148916	0.22133541946792	.	.	.	.
KIRC	CAediting_677519	chr9_15167509_-	2.59568753987024e-05	0.338370861569803	.	.	.	.
ESCA	CAediting_677519	chr9_15167509_-	0.000333661574426833	0.308721320431538	.	.	.	.
OV	CAediting_677519	chr9_15167509_-	0.0229567188979684	0.200145741640719	.	.	.	.
BRCA	CAediting_677520	chr9_15167510_-	0.0299063365994379	0.278250905448751	.	.	.	.
LUSC	CAediting_677537	chr9_15167689_-	0.0488730888951297	0.257598658828306	.	.	.	.
ESCA	CAediting_677537	chr9_15167689_-	.	.	0.0375232777396296	0.18856492180585	.	.
THCA	CAediting_677538	chr9_15167690_-	0.030497586903554	0.167495305477749	.	.	.	.
ESCA	CAediting_677538	chr9_15167690_-	0.0051073748744078	0.248021728690711	0.035904350530981	0.187116202408496	.	.
BRCA	CAediting_677542	chr9_15167713_-	0.00493296341757257	0.281827554863128	.	.	.	.
STAD	CAediting_677542	chr9_15167713_-	0.0186245570305259	0.165030646480006	.	.	.	.
ESCA	CAediting_677542	chr9_15167713_-	0.00915347191971282	0.236026037407485	.	.	.	.

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Relation with cancer stages for TTC39B

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BLCA	pathologic_stage	CAediting_677483	chr9_15167129_-	0.00868913707487085	0.293377861016666
BLCA	pathologic_stage	CAediting_677511	chr9_15167329_-	0.0479160577292684	0.166902401617954
BRCA	pathologic_stage	CAediting_677511	chr9_15167329_-	0.0346319185800054	0.129597608914077
CESC	clinical_stage	CAediting_677488	chr9_15167162_-	0.030068467414105	-0.138341256419543
CESC	clinical_stage	CAediting_677511	chr9_15167329_-	0.0428942751386788	-0.149853535682366
ESCA	clinical_stage	CAediting_677511	chr9_15167329_-	0.011851303923425	-0.353270530713015
ESCA	pathologic_stage	CAediting_677480	chr9_15167115_-	0.0457708190573489	0.17759385932471
HNSC	clinical_stage	CAediting_677480	chr9_15167115_-	0.00660686946086125	0.285905135791384
HNSC	clinical_stage	CAediting_677491	chr9_15167175_-	0.00117560288071856	0.217376485166569
HNSC	pathologic_stage	CAediting_677480	chr9_15167115_-	0.0340299392530001	0.234410118960041
HNSC	pathologic_stage	CAediting_677491	chr9_15167175_-	0.021523687861603	0.161273338426562
KIRC	pathologic_stage	CAediting_677480	chr9_15167115_-	0.0218283480898908	0.22915448111551
KIRC	pathologic_stage	CAediting_677488	chr9_15167162_-	0.00752392637302341	0.132468203059079
KIRC	pathologic_stage	CAediting_677491	chr9_15167175_-	0.0139736360350278	0.133985814368579
KIRC	pathologic_stage	CAediting_677518	chr9_15167508_-	0.0400190149316457	0.149130335477831
KIRP	clinical_stage	CAediting_677511	chr9_15167329_-	0.0411028526493288	0.243065146082453
LIHC	pathologic_stage	CAediting_677491	chr9_15167175_-	0.0283567983711991	-0.262150731361265
LUAD	pathologic_stage	CAediting_677480	chr9_15167115_-	0.0389239048734863	0.223123117488892
LUAD	pathologic_stage	CAediting_677488	chr9_15167162_-	0.0386949681420278	0.105551612086412
PAAD	pathologic_stage	CAediting_677483	chr9_15167129_-	0.0250499114699767	0.310542506583607
PAAD	pathologic_stage	CAediting_677488	chr9_15167162_-	0.0307393448486034	0.178281209372333
STAD	pathologic_stage	CAediting_677483	chr9_15167129_-	0.0299808412990537	0.166522328103595
THCA	pathologic_stage	CAediting_677480	chr9_15167115_-	0.00837948072294373	0.193309277656487
THCA	pathologic_stage	CAediting_677488	chr9_15167162_-	0.0370015726560194	0.101571120058617
THCA	pathologic_stage	CAediting_677491	chr9_15167175_-	0.00212557467126554	0.175550018503774
THCA	pathologic_stage	CAediting_677511	chr9_15167329_-	0.0134386336022581	0.134342832951694
UCEC	clinical_stage	CAediting_677488	chr9_15167162_-	0.0471683766328673	0.128257330202195

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Relation with survival for TTC39B

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
STAD	CAediting_677488	chr9_15167162_-	0.00214818560058916	0.0127186	6.23169
KIRC	CAediting_677488	chr9_15167162_-	0.0158305996330924	0.0425035	3.66378
KIRC	CAediting_677516	chr9_15167496_-	0.00680377236745877	0.0083643	1141.73
ESCA	CAediting_677538	chr9_15167690_-	0.000366296148034739	0.0073134	19.2009
PAAD	CAediting_677491	chr9_15167175_-	0.0325315868613592	0.0418845	5.85736

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RelatedDrugs for TTC39B

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for TTC39B

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene