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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: AGR3 (CAeditome ID:155465) |
Gene summary for AGR3 |
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Gene information | Gene symbol | AGR3 | Gene ID | 155465 |
Gene name | anterior gradient 3, protein disulphide isomerase family member | |
Synonyms | AG-3|AG3|BCMP11|HAG3|PDIA18|hAG-3 | |
Cytomap | 7p21.1 | |
Type of gene | protein-coding | |
Description | anterior gradient protein 3anterior gradient homolog 3anterior gradient protein 3 homologbreast cancer membrane protein 11protein disulfide isomerase family A, member 18 | |
Modification date | 20210524 | |
UniProtAcc | Q8TD06 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
AGR3 | GO:0002162 | Anterior gradient protein 3 | 12592373 |
AGR3 | GO:0005783 | Anterior gradient protein 3 | 0000052 |
AGR3 | GO:0043231 | Anterior gradient protein 3 | 0000052 |
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RNA A-to-I events for AGR3 |
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CAediting_529669(16859996, -), CAediting_529670(16859999, -), CAediting_529671(16860011, -), CAediting_529672(16860013, -), CAediting_529673(16860038, -), CAediting_529674(16860039, -), CAediting_529675(16860052, -), CAediting_529676(16860064, -), CAediting_529677(16860084, -), CAediting_529678(16860088, -), CAediting_529679(16860090, -), CAediting_529680(16868025, -), CAediting_529681(16868029, -), CAediting_529682(16868059, -), CAediting_529683(16868096, -), CAediting_529684(16868107, -), CAediting_529685(16868320, -), CAediting_529686(16868337, -), CAediting_529687(16868348, -), CAediting_529688(16868349, -), CAediting_529689(16868387, -), CAediting_529690(16868392, -), CAediting_529691(16868419, -), CAediting_529692(16868427, -), CAediting_529693(16868428, -), CAediting_529694(16868434, -), CAediting_529695(16869483, -), CAediting_529696(16869507, -), CAediting_529697(16869510, -), CAediting_529698(16869511, -), CAediting_529699(16869525, -), CAediting_529700(16869531, -), CAediting_529701(16869536, -), CAediting_529702(16869545, -), CAediting_529703(16872984, -), CAediting_529704(16872985, -), CAediting_529705(16873009, -), CAediting_529706(16874866, -), CAediting_529707(16874920, -), CAediting_529708(16875033, -), CAediting_529709(16875034, -), CAediting_529710(16877392, -), CAediting_529711(16877402, -), CAediting_529712(16877487, -), CAediting_529713(16877503, -), CAediting_529714(16877507, -), CAediting_529715(16877521, -), CAediting_529716(16877524, -), CAediting_529717(16877527, -), CAediting_529718(16877533, -), CAediting_529719(16877536, -), CAediting_529720(16877537, -), CAediting_529721(16877539, -), CAediting_529722(16880257, -), CAediting_529723(16880325, -), CAediting_529724(16880343, -), CAediting_529725(16880364, -), CAediting_529726(16880365, -), CAediting_529727(16880410, -), |
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RNA editing positional annotations for AGR3 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_529669 | chr7_16859996_- | intronic |
CAediting_529670 | chr7_16859999_- | intronic |
CAediting_529671 | chr7_16860011_- | intronic |
CAediting_529672 | chr7_16860013_- | intronic |
CAediting_529673 | chr7_16860038_- | intronic |
CAediting_529674 | chr7_16860039_- | intronic |
CAediting_529675 | chr7_16860052_- | intronic |
CAediting_529676 | chr7_16860064_- | intronic |
CAediting_529677 | chr7_16860084_- | intronic |
CAediting_529678 | chr7_16860088_- | intronic |
CAediting_529679 | chr7_16860090_- | intronic |
CAediting_529680 | chr7_16868025_- | intronic |
CAediting_529681 | chr7_16868029_- | intronic |
CAediting_529682 | chr7_16868059_- | intronic |
CAediting_529683 | chr7_16868096_- | intronic |
CAediting_529684 | chr7_16868107_- | intronic |
CAediting_529685 | chr7_16868320_- | intronic |
CAediting_529686 | chr7_16868337_- | intronic |
CAediting_529687 | chr7_16868348_- | intronic |
CAediting_529688 | chr7_16868349_- | intronic |
CAediting_529689 | chr7_16868387_- | intronic |
CAediting_529690 | chr7_16868392_- | intronic |
CAediting_529691 | chr7_16868419_- | intronic |
CAediting_529692 | chr7_16868427_- | intronic |
CAediting_529693 | chr7_16868428_- | intronic |
CAediting_529694 | chr7_16868434_- | intronic |
CAediting_529695 | chr7_16869483_- | intronic |
CAediting_529696 | chr7_16869507_- | intronic |
CAediting_529697 | chr7_16869510_- | intronic |
CAediting_529698 | chr7_16869511_- | intronic |
CAediting_529699 | chr7_16869525_- | intronic |
CAediting_529700 | chr7_16869531_- | intronic |
CAediting_529701 | chr7_16869536_- | intronic |
CAediting_529702 | chr7_16869545_- | intronic |
CAediting_529703 | chr7_16872984_- | intronic |
CAediting_529704 | chr7_16872985_- | intronic |
CAediting_529705 | chr7_16873009_- | intronic |
CAediting_529706 | chr7_16874866_- | ncRNA_intronic |
CAediting_529707 | chr7_16874920_- | ncRNA_intronic |
CAediting_529708 | chr7_16875033_- | ncRNA_intronic |
CAediting_529709 | chr7_16875034_- | ncRNA_intronic |
CAediting_529710 | chr7_16877392_- | ncRNA_intronic |
CAediting_529711 | chr7_16877402_- | ncRNA_intronic |
CAediting_529712 | chr7_16877487_- | ncRNA_intronic |
CAediting_529713 | chr7_16877503_- | ncRNA_intronic |
CAediting_529714 | chr7_16877507_- | ncRNA_intronic |
CAediting_529715 | chr7_16877521_- | ncRNA_intronic |
CAediting_529716 | chr7_16877524_- | ncRNA_intronic |
CAediting_529717 | chr7_16877527_- | ncRNA_intronic |
CAediting_529718 | chr7_16877533_- | ncRNA_intronic |
CAediting_529719 | chr7_16877536_- | ncRNA_intronic |
CAediting_529720 | chr7_16877537_- | ncRNA_intronic |
CAediting_529721 | chr7_16877539_- | ncRNA_intronic |
CAediting_529722 | chr7_16880257_- | ncRNA_intronic |
CAediting_529723 | chr7_16880325_- | ncRNA_intronic |
CAediting_529724 | chr7_16880343_- | ncRNA_intronic |
CAediting_529725 | chr7_16880364_- | ncRNA_intronic |
CAediting_529726 | chr7_16880365_- | ncRNA_intronic |
CAediting_529727 | chr7_16880410_- | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_529669 | chr7_16859996_- | SINE | Alu | AluJr |
CAediting_529670 | chr7_16859999_- | SINE | Alu | AluJr |
CAediting_529671 | chr7_16860011_- | SINE | Alu | AluJr |
CAediting_529672 | chr7_16860013_- | SINE | Alu | AluJr |
CAediting_529673 | chr7_16860038_- | SINE | Alu | AluJr |
CAediting_529674 | chr7_16860039_- | SINE | Alu | AluJr |
CAediting_529675 | chr7_16860052_- | SINE | Alu | AluJr |
CAediting_529676 | chr7_16860064_- | SINE | Alu | AluJr |
CAediting_529677 | chr7_16860084_- | SINE | Alu | AluJr |
CAediting_529678 | chr7_16860088_- | SINE | Alu | AluJr |
CAediting_529679 | chr7_16860090_- | SINE | Alu | AluJr |
CAediting_529680 | chr7_16868025_- | LINE | L1 | L1MA8 |
CAediting_529681 | chr7_16868029_- | LINE | L1 | L1MA8 |
CAediting_529682 | chr7_16868059_- | LINE | L1 | L1MA8 |
CAediting_529683 | chr7_16868096_- | LINE | L1 | L1MA8 |
CAediting_529684 | chr7_16868107_- | LINE | L1 | L1MA8 |
CAediting_529685 | chr7_16868320_- | SINE | Alu | AluSp |
CAediting_529686 | chr7_16868337_- | SINE | Alu | AluSp |
CAediting_529687 | chr7_16868348_- | SINE | Alu | AluSp |
CAediting_529688 | chr7_16868349_- | SINE | Alu | AluSp |
CAediting_529689 | chr7_16868387_- | SINE | Alu | AluSp |
CAediting_529690 | chr7_16868392_- | SINE | Alu | AluSp |
CAediting_529691 | chr7_16868419_- | SINE | Alu | AluSp |
CAediting_529692 | chr7_16868427_- | SINE | Alu | AluSp |
CAediting_529693 | chr7_16868428_- | SINE | Alu | AluSp |
CAediting_529694 | chr7_16868434_- | SINE | Alu | AluSp |
CAediting_529695 | chr7_16869483_- | SINE | Alu | AluJb |
CAediting_529696 | chr7_16869507_- | SINE | Alu | AluJb |
CAediting_529697 | chr7_16869510_- | SINE | Alu | AluJb |
CAediting_529698 | chr7_16869511_- | SINE | Alu | AluJb |
CAediting_529699 | chr7_16869525_- | SINE | Alu | AluJb |
CAediting_529700 | chr7_16869531_- | SINE | Alu | AluJb |
CAediting_529701 | chr7_16869536_- | SINE | Alu | AluJb |
CAediting_529702 | chr7_16869545_- | SINE | Alu | AluJb |
CAediting_529703 | chr7_16872984_- | LINE | L1 | L1MA5 |
CAediting_529704 | chr7_16872985_- | LINE | L1 | L1MA5 |
CAediting_529705 | chr7_16873009_- | LINE | L1 | L1MA5 |
CAediting_529706 | chr7_16874866_- | SINE | Alu | AluSz |
CAediting_529707 | chr7_16874920_- | SINE | Alu | AluSz |
CAediting_529708 | chr7_16875033_- | SINE | Alu | AluSz |
CAediting_529709 | chr7_16875034_- | SINE | Alu | AluSz |
CAediting_529722 | chr7_16880257_- | SINE | Alu | AluSq2 |
CAediting_529723 | chr7_16880325_- | SINE | Alu | AluSq2 |
CAediting_529724 | chr7_16880343_- | SINE | Alu | AluSq2 |
CAediting_529725 | chr7_16880364_- | SINE | Alu | AluSq2 |
CAediting_529726 | chr7_16880365_- | SINE | Alu | AluSq2 |
CAediting_529727 | chr7_16880410_- | SINE | Alu | AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for AGR3 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for AGR3 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for AGR3 |
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The effects of the RNA editing to the miRNA binding sites for AGR3 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for AGR3 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for AGR3 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for AGR3 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
BRCA | pathologic_stage | CAediting_529677 | chr7_16860084_- | 0.0440049230277619 | 0.198889662584017 |
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Relation with survival for AGR3 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for AGR3 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for AGR3 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |