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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: FGD5 (CAeditome ID:152273) |
Gene summary for FGD5 |
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Gene information | Gene symbol | FGD5 | Gene ID | 152273 |
Gene name | FYVE, RhoGEF and PH domain containing 5 | |
Synonyms | ZFYVE23 | |
Cytomap | 3p25.1 | |
Type of gene | protein-coding | |
Description | FYVE, RhoGEF and PH domain-containing protein 5zinc finger FYVE domain-containing protein 23 | |
Modification date | 20210518 | |
UniProtAcc | Q6ZNL6 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
FGD5 | GO:0005886 | FYVE, RhoGEF and PH domain-containing protein 5 | 0000052 |
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RNA A-to-I events for FGD5 |
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CAediting_259952(14821387, +), CAediting_259953(14822055, +), CAediting_259954(14882577, +), CAediting_259955(14885056, +), CAediting_259956(14885057, +), CAediting_259957(14892288, +), CAediting_259958(14892303, +), CAediting_259959(14892427, +), CAediting_259960(14892714, +), CAediting_259961(14892725, +), CAediting_259962(14892751, +), CAediting_259963(14892768, +), |
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RNA editing positional annotations for FGD5 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_259952 | chr3_14821387_+ | exonic |
CAediting_259953 | chr3_14822055_+ | intronic |
CAediting_259954 | chr3_14882577_+ | ncRNA_intronic |
CAediting_259955 | chr3_14885056_+ | ncRNA_intronic |
CAediting_259956 | chr3_14885057_+ | ncRNA_intronic |
CAediting_259957 | chr3_14892288_+ | ncRNA_intronic |
CAediting_259958 | chr3_14892303_+ | ncRNA_intronic |
CAediting_259959 | chr3_14892427_+ | ncRNA_intronic |
CAediting_259960 | chr3_14892714_+ | ncRNA_intronic |
CAediting_259961 | chr3_14892725_+ | ncRNA_intronic |
CAediting_259962 | chr3_14892751_+ | ncRNA_intronic |
CAediting_259963 | chr3_14892768_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_259953 | chr3_14822055_+ | SINE | Alu | AluSc |
CAediting_259954 | chr3_14882577_+ | SINE | Alu | AluSx1 |
CAediting_259955 | chr3_14885056_+ | LTR | ERVK | LTR3A |
CAediting_259956 | chr3_14885057_+ | LTR | ERVK | LTR3A |
CAediting_259957 | chr3_14892288_+ | SINE | Alu | AluJr |
CAediting_259958 | chr3_14892303_+ | SINE | Alu | AluJr |
CAediting_259959 | chr3_14892427_+ | SINE | Alu | AluJr |
CAediting_259960 | chr3_14892714_+ | SINE | Alu | AluSq2 |
CAediting_259961 | chr3_14892725_+ | SINE | Alu | AluSq2 |
CAediting_259962 | chr3_14892751_+ | SINE | Alu | AluSq2 |
CAediting_259963 | chr3_14892768_+ | SINE | Alu | AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for FGD5 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for FGD5 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for FGD5 |
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The effects of the RNA editing to the miRNA binding sites for FGD5 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000154783.9 | ENST00000543601 | hsa-miR-1304-3p | 14934212 | 14934218 | 7mer-m8 | 14934199 | 14934219 | 158 | -23.9 |
CAediting_688080 | chr9_63819626_+ | ENSG00000154783.9 | ENST00000543601 | hsa-miR-4477b | 14933921 | 14933927 | 7mer-m8 | 14933907 | 14933928 | 152 | -14.18 |
CAediting_1160181 | chr17_7017644_- | ENSG00000154783.9 | ENST00000543601 | hsa-miR-195-3p | 14934059 | 14934065 | 7mer-m8 | 14934045 | 14934066 | 150 | -12.41 |
CAediting_468389 | chr6_31355314_- | ENSG00000154783.9 | ENST00000543601 | hsa-miR-6891-5p | 14933903 | 14933909 | 7mer-m8 | 14933892 | 14933910 | 146 | -18.23 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_846604 | chr11_93733708_- | ENSG00000154783.9 | ENST00000543601 | hsa-miR-1304-3p | 14933437 | 14933443 | 7mer-m8 | 14933423 | 14933444 | 143 | -12.34 |
CAediting_980496 | chr14_31014685_- | ENSG00000154783.9 | ENST00000543601 | hsa-miR-624-3p | 14933859 | 14933865 | 7mer-m8 | 14933844 | 14933866 | 148 | -18.75 |
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The effects of the RNA editing to the stability of the RNA structures for FGD5 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000285046.8 | protein_coding | ![]() | ![]() |
ENST00000543601.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_259952 | ENST00000285046.8 | chr3_14821387_+ | -2166.60 | -2166.00 | -2166.60 |
CAediting_259952 | ENST00000543601.4 | chr3_14821387_+ | -2148.90 | -2146.90 | -2148.90 |
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Relation with ADAR for FGD5 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for FGD5 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for FGD5 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for FGD5 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for FGD5 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
FGD5 | C0006142 | Malignant neoplasm of breast | 1 | CTD_human |
FGD5 | C0678222 | Breast Carcinoma | 1 | CTD_human |
FGD5 | C1257931 | Mammary Neoplasms, Human | 1 | CTD_human |
FGD5 | C1458155 | Mammary Neoplasms | 1 | CTD_human |
FGD5 | C4704874 | Mammary Carcinoma, Human | 1 | CTD_human |