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Editing gene: LINC00342 (CAeditome ID:150759)

Gene summary for LINC00342

Gene summary

Gene information	Gene symbol	LINC00342
	Gene ID	150759
	Gene name	long intergenic non-protein coding RNA 342
	Synonyms	NCRNA00342
	Cytomap	2q11.1
	Type of gene	ncRNA
	Description	-
	Modification date	20210518
	UniProtAcc	.
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for LINC00342

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000232931.4

RNA A-to-I editing events in Cancer.

CAediting_199358(95808684, -), CAediting_199359(95808702, -), CAediting_199360(95808734, -), CAediting_199361(95808740, -), CAediting_199362(95808746, -), CAediting_199363(95808748, -), CAediting_199364(95808766, -), CAediting_199365(95808779, -), CAediting_199366(95808780, -), CAediting_199367(95808803, -), CAediting_199368(95808808, -), CAediting_199369(95808817, -), CAediting_199370(95808820, -), CAediting_199371(95808821, -), CAediting_199372(95808822, -), CAediting_199373(95808823, -), CAediting_199374(95808846, -), CAediting_199375(95808847, -), CAediting_199376(95808863, -), CAediting_199377(95808868, -), CAediting_199378(95808869, -), CAediting_199379(95808885, -), CAediting_199380(95808887, -), CAediting_199381(95808891, -), CAediting_199382(95808997, -), CAediting_199383(95809003, -), CAediting_199384(95809015, -), CAediting_199385(95809016, -), CAediting_199386(95809017, -), CAediting_199387(95809068, -), CAediting_199388(95809145, -), CAediting_199389(95809149, -), CAediting_199390(95809151, -), CAediting_199391(95809173, -), CAediting_199392(95809186, -), CAediting_199393(95809196, -), CAediting_199394(95809216, -), CAediting_199395(95809221, -), CAediting_199396(95815338, -), CAediting_199397(95815339, -), CAediting_199398(95815351, -), CAediting_199399(95815354, -), CAediting_199400(95815355, -), CAediting_199401(95815357, -), CAediting_199402(95815359, -), CAediting_199403(95815363, -), CAediting_199404(95815375, -), CAediting_199405(95815380, -), CAediting_199406(95815381, -), CAediting_199407(95815396, -), CAediting_199408(95815399, -), CAediting_199409(95815402, -), CAediting_199410(95815405, -), CAediting_199411(95815410, -), CAediting_199412(95815422, -), CAediting_199413(95815423, -), CAediting_199414(95815439, -), CAediting_199415(95815441, -), CAediting_199416(95815450, -), CAediting_199417(95815453, -), CAediting_199418(95815471, -), CAediting_199419(95815493, -), CAediting_199420(95815497, -), CAediting_199421(95815504, -), CAediting_199422(95815524, -), CAediting_199423(95815528, -), CAediting_199424(95815540, -), CAediting_199425(95815552, -), CAediting_199426(95815559, -), CAediting_199427(95815582, -), CAediting_199428(95815605, -), CAediting_199429(95815635, -), CAediting_199430(95815636, -), CAediting_199431(95815637, -), CAediting_199432(95815640, -), CAediting_199433(95815643, -), CAediting_199434(95815659, -), CAediting_199435(95815660, -), CAediting_199436(95815668, -), CAediting_199437(95815669, -), CAediting_199438(95815674, -), CAediting_199439(95815678, -), CAediting_199440(95815680, -), CAediting_199441(95815692, -), CAediting_199442(95815695, -), CAediting_199443(95815696, -), CAediting_199444(95815697, -), CAediting_199445(95815703, -), CAediting_199446(95815709, -), CAediting_199447(95815710, -), CAediting_199448(95815716, -), CAediting_199449(95815719, -), CAediting_199450(95815735, -), CAediting_199451(95815739, -), CAediting_199452(95815748, -), CAediting_199453(95815758, -), CAediting_199454(95815760, -), CAediting_199455(95815815, -), CAediting_199456(95815834, -), CAediting_199457(95815842, -), CAediting_199458(95815845, -), CAediting_199459(95815856, -), CAediting_199460(95815857, -), CAediting_199461(95815868, -), CAediting_199462(95815876, -), CAediting_199463(95815901, -),

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RNA editing positional annotations for LINC00342 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_199358	chr2_95808684_-	ncRNA_intronic
CAediting_199359	chr2_95808702_-	ncRNA_intronic
CAediting_199360	chr2_95808734_-	ncRNA_intronic
CAediting_199361	chr2_95808740_-	ncRNA_intronic
CAediting_199362	chr2_95808746_-	ncRNA_intronic
CAediting_199363	chr2_95808748_-	ncRNA_intronic
CAediting_199364	chr2_95808766_-	ncRNA_intronic
CAediting_199365	chr2_95808779_-	ncRNA_intronic
CAediting_199366	chr2_95808780_-	ncRNA_intronic
CAediting_199367	chr2_95808803_-	ncRNA_intronic
CAediting_199368	chr2_95808808_-	ncRNA_intronic
CAediting_199369	chr2_95808817_-	ncRNA_intronic
CAediting_199370	chr2_95808820_-	ncRNA_intronic
CAediting_199371	chr2_95808821_-	ncRNA_intronic
CAediting_199372	chr2_95808822_-	ncRNA_intronic
CAediting_199373	chr2_95808823_-	ncRNA_intronic
CAediting_199374	chr2_95808846_-	ncRNA_intronic
CAediting_199375	chr2_95808847_-	ncRNA_intronic
CAediting_199376	chr2_95808863_-	ncRNA_intronic
CAediting_199377	chr2_95808868_-	ncRNA_intronic
CAediting_199378	chr2_95808869_-	ncRNA_intronic
CAediting_199379	chr2_95808885_-	ncRNA_intronic
CAediting_199380	chr2_95808887_-	ncRNA_intronic
CAediting_199381	chr2_95808891_-	ncRNA_intronic
CAediting_199382	chr2_95808997_-	ncRNA_intronic
CAediting_199383	chr2_95809003_-	ncRNA_intronic
CAediting_199384	chr2_95809015_-	ncRNA_intronic
CAediting_199385	chr2_95809016_-	ncRNA_intronic
CAediting_199386	chr2_95809017_-	ncRNA_intronic
CAediting_199387	chr2_95809068_-	ncRNA_intronic
CAediting_199388	chr2_95809145_-	ncRNA_intronic
CAediting_199389	chr2_95809149_-	ncRNA_intronic
CAediting_199390	chr2_95809151_-	ncRNA_intronic
CAediting_199391	chr2_95809173_-	ncRNA_intronic
CAediting_199392	chr2_95809186_-	ncRNA_intronic
CAediting_199393	chr2_95809196_-	ncRNA_intronic
CAediting_199394	chr2_95809216_-	ncRNA_intronic
CAediting_199395	chr2_95809221_-	ncRNA_intronic
CAediting_199396	chr2_95815338_-	ncRNA_exonic
CAediting_199397	chr2_95815339_-	ncRNA_exonic
CAediting_199398	chr2_95815351_-	ncRNA_exonic
CAediting_199399	chr2_95815354_-	ncRNA_exonic
CAediting_199400	chr2_95815355_-	ncRNA_exonic
CAediting_199401	chr2_95815357_-	ncRNA_exonic
CAediting_199402	chr2_95815359_-	ncRNA_exonic
CAediting_199403	chr2_95815363_-	ncRNA_exonic
CAediting_199404	chr2_95815375_-	ncRNA_exonic
CAediting_199405	chr2_95815380_-	ncRNA_exonic
CAediting_199406	chr2_95815381_-	ncRNA_exonic
CAediting_199407	chr2_95815396_-	ncRNA_exonic
CAediting_199408	chr2_95815399_-	ncRNA_exonic
CAediting_199409	chr2_95815402_-	ncRNA_exonic
CAediting_199410	chr2_95815405_-	ncRNA_exonic
CAediting_199411	chr2_95815410_-	ncRNA_exonic
CAediting_199412	chr2_95815422_-	ncRNA_exonic
CAediting_199413	chr2_95815423_-	ncRNA_exonic
CAediting_199414	chr2_95815439_-	ncRNA_exonic
CAediting_199415	chr2_95815441_-	ncRNA_exonic
CAediting_199416	chr2_95815450_-	ncRNA_exonic
CAediting_199417	chr2_95815453_-	ncRNA_exonic
CAediting_199418	chr2_95815471_-	ncRNA_exonic
CAediting_199419	chr2_95815493_-	ncRNA_exonic
CAediting_199420	chr2_95815497_-	ncRNA_exonic
CAediting_199421	chr2_95815504_-	ncRNA_exonic
CAediting_199422	chr2_95815524_-	ncRNA_exonic
CAediting_199423	chr2_95815528_-	ncRNA_exonic
CAediting_199424	chr2_95815540_-	ncRNA_exonic
CAediting_199425	chr2_95815552_-	ncRNA_exonic
CAediting_199426	chr2_95815559_-	ncRNA_exonic
CAediting_199427	chr2_95815582_-	ncRNA_exonic
CAediting_199428	chr2_95815605_-	ncRNA_exonic
CAediting_199429	chr2_95815635_-	ncRNA_exonic
CAediting_199430	chr2_95815636_-	ncRNA_exonic
CAediting_199431	chr2_95815637_-	ncRNA_exonic
CAediting_199432	chr2_95815640_-	ncRNA_exonic
CAediting_199433	chr2_95815643_-	ncRNA_exonic
CAediting_199434	chr2_95815659_-	ncRNA_exonic
CAediting_199435	chr2_95815660_-	ncRNA_exonic
CAediting_199436	chr2_95815668_-	ncRNA_exonic
CAediting_199437	chr2_95815669_-	ncRNA_exonic
CAediting_199438	chr2_95815674_-	ncRNA_exonic
CAediting_199439	chr2_95815678_-	ncRNA_exonic
CAediting_199440	chr2_95815680_-	ncRNA_exonic
CAediting_199441	chr2_95815692_-	ncRNA_exonic
CAediting_199442	chr2_95815695_-	ncRNA_exonic
CAediting_199443	chr2_95815696_-	ncRNA_exonic
CAediting_199444	chr2_95815697_-	ncRNA_exonic
CAediting_199445	chr2_95815703_-	ncRNA_exonic
CAediting_199446	chr2_95815709_-	ncRNA_exonic
CAediting_199447	chr2_95815710_-	ncRNA_exonic
CAediting_199448	chr2_95815716_-	ncRNA_exonic
CAediting_199449	chr2_95815719_-	ncRNA_exonic
CAediting_199450	chr2_95815735_-	ncRNA_exonic
CAediting_199451	chr2_95815739_-	ncRNA_exonic
CAediting_199452	chr2_95815748_-	ncRNA_exonic
CAediting_199453	chr2_95815758_-	ncRNA_exonic
CAediting_199454	chr2_95815760_-	ncRNA_exonic
CAediting_199455	chr2_95815815_-	ncRNA_exonic
CAediting_199456	chr2_95815834_-	ncRNA_exonic
CAediting_199457	chr2_95815842_-	ncRNA_exonic
CAediting_199458	chr2_95815845_-	ncRNA_exonic
CAediting_199459	chr2_95815856_-	ncRNA_exonic
CAediting_199460	chr2_95815857_-	ncRNA_exonic
CAediting_199461	chr2_95815868_-	ncRNA_exonic
CAediting_199462	chr2_95815876_-	ncRNA_exonic
CAediting_199463	chr2_95815901_-	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_199358	chr2_95808684_-	SINE	Alu	AluJo
CAediting_199359	chr2_95808702_-	SINE	Alu	AluJo
CAediting_199360	chr2_95808734_-	SINE	Alu	AluJo
CAediting_199361	chr2_95808740_-	SINE	Alu	AluJo
CAediting_199362	chr2_95808746_-	SINE	Alu	AluJo
CAediting_199363	chr2_95808748_-	SINE	Alu	AluJo
CAediting_199364	chr2_95808766_-	SINE	Alu	AluJo
CAediting_199365	chr2_95808779_-	SINE	Alu	AluJo
CAediting_199366	chr2_95808780_-	SINE	Alu	AluJo
CAediting_199367	chr2_95808803_-	SINE	Alu	AluJo
CAediting_199368	chr2_95808808_-	SINE	Alu	AluJo
CAediting_199369	chr2_95808817_-	SINE	Alu	AluJo
CAediting_199370	chr2_95808820_-	SINE	Alu	AluJo
CAediting_199371	chr2_95808821_-	SINE	Alu	AluJo
CAediting_199372	chr2_95808822_-	SINE	Alu	AluJo
CAediting_199373	chr2_95808823_-	SINE	Alu	AluJo
CAediting_199374	chr2_95808846_-	SINE	Alu	AluJo
CAediting_199375	chr2_95808847_-	SINE	Alu	AluJo
CAediting_199376	chr2_95808863_-	SINE	Alu	AluJo
CAediting_199377	chr2_95808868_-	SINE	Alu	AluJo
CAediting_199378	chr2_95808869_-	SINE	Alu	AluJo
CAediting_199379	chr2_95808885_-	SINE	Alu	AluJo
CAediting_199380	chr2_95808887_-	SINE	Alu	AluJo
CAediting_199381	chr2_95808891_-	SINE	Alu	AluJo
CAediting_199382	chr2_95808997_-	SINE	Alu	AluSx
CAediting_199383	chr2_95809003_-	SINE	Alu	AluSx
CAediting_199384	chr2_95809015_-	SINE	Alu	AluSx
CAediting_199385	chr2_95809016_-	SINE	Alu	AluSx
CAediting_199386	chr2_95809017_-	SINE	Alu	AluSx
CAediting_199387	chr2_95809068_-	SINE	Alu	AluSx
CAediting_199388	chr2_95809145_-	SINE	Alu	AluSx
CAediting_199389	chr2_95809149_-	SINE	Alu	AluSx
CAediting_199390	chr2_95809151_-	SINE	Alu	AluSx
CAediting_199391	chr2_95809173_-	SINE	Alu	AluSx
CAediting_199392	chr2_95809186_-	SINE	Alu	AluSx
CAediting_199393	chr2_95809196_-	SINE	Alu	AluSx
CAediting_199394	chr2_95809216_-	SINE	Alu	AluSx
CAediting_199395	chr2_95809221_-	SINE	Alu	AluSx
CAediting_199396	chr2_95815338_-	LINE	L1	L1PREC2
CAediting_199397	chr2_95815339_-	LINE	L1	L1PREC2
CAediting_199398	chr2_95815351_-	LINE	L1	L1PREC2
CAediting_199399	chr2_95815354_-	LINE	L1	L1PREC2
CAediting_199400	chr2_95815355_-	LINE	L1	L1PREC2
CAediting_199401	chr2_95815357_-	LINE	L1	L1PREC2
CAediting_199402	chr2_95815359_-	LINE	L1	L1PREC2
CAediting_199403	chr2_95815363_-	LINE	L1	L1PREC2
CAediting_199404	chr2_95815375_-	LINE	L1	L1PREC2
CAediting_199405	chr2_95815380_-	LINE	L1	L1PREC2
CAediting_199406	chr2_95815381_-	LINE	L1	L1PREC2
CAediting_199407	chr2_95815396_-	LINE	L1	L1PREC2
CAediting_199408	chr2_95815399_-	LINE	L1	L1PREC2
CAediting_199409	chr2_95815402_-	LINE	L1	L1PREC2
CAediting_199410	chr2_95815405_-	LINE	L1	L1PREC2
CAediting_199411	chr2_95815410_-	LINE	L1	L1PREC2
CAediting_199412	chr2_95815422_-	LINE	L1	L1PREC2
CAediting_199413	chr2_95815423_-	LINE	L1	L1PREC2
CAediting_199414	chr2_95815439_-	LINE	L1	L1PREC2
CAediting_199415	chr2_95815441_-	LINE	L1	L1PREC2
CAediting_199416	chr2_95815450_-	LINE	L1	L1PREC2
CAediting_199417	chr2_95815453_-	LINE	L1	L1PREC2
CAediting_199418	chr2_95815471_-	LINE	L1	L1PREC2
CAediting_199419	chr2_95815493_-	LINE	L1	L1PREC2
CAediting_199420	chr2_95815497_-	LINE	L1	L1PREC2
CAediting_199421	chr2_95815504_-	LINE	L1	L1PREC2
CAediting_199422	chr2_95815524_-	LINE	L1	L1PREC2
CAediting_199423	chr2_95815528_-	LINE	L1	L1PREC2
CAediting_199424	chr2_95815540_-	LINE	L1	L1PREC2
CAediting_199425	chr2_95815552_-	LINE	L1	L1PREC2
CAediting_199426	chr2_95815559_-	LINE	L1	L1PREC2
CAediting_199427	chr2_95815582_-	LINE	L1	L1PREC2
CAediting_199428	chr2_95815605_-	LINE	L1	L1PREC2
CAediting_199429	chr2_95815635_-	LINE	L1	L1PREC2
CAediting_199430	chr2_95815636_-	LINE	L1	L1PREC2
CAediting_199431	chr2_95815637_-	LINE	L1	L1PREC2
CAediting_199432	chr2_95815640_-	LINE	L1	L1PREC2
CAediting_199433	chr2_95815643_-	LINE	L1	L1PREC2
CAediting_199434	chr2_95815659_-	LINE	L1	L1PREC2
CAediting_199435	chr2_95815660_-	LINE	L1	L1PREC2
CAediting_199436	chr2_95815668_-	LINE	L1	L1PREC2
CAediting_199437	chr2_95815669_-	LINE	L1	L1PREC2
CAediting_199438	chr2_95815674_-	LINE	L1	L1PREC2
CAediting_199439	chr2_95815678_-	LINE	L1	L1PREC2
CAediting_199440	chr2_95815680_-	LINE	L1	L1PREC2
CAediting_199441	chr2_95815692_-	LINE	L1	L1PREC2
CAediting_199442	chr2_95815695_-	LINE	L1	L1PREC2
CAediting_199443	chr2_95815696_-	LINE	L1	L1PREC2
CAediting_199444	chr2_95815697_-	LINE	L1	L1PREC2
CAediting_199445	chr2_95815703_-	LINE	L1	L1PREC2
CAediting_199446	chr2_95815709_-	LINE	L1	L1PREC2
CAediting_199447	chr2_95815710_-	LINE	L1	L1PREC2
CAediting_199448	chr2_95815716_-	LINE	L1	L1PREC2
CAediting_199449	chr2_95815719_-	LINE	L1	L1PREC2
CAediting_199450	chr2_95815735_-	LINE	L1	L1PREC2
CAediting_199451	chr2_95815739_-	LINE	L1	L1PREC2
CAediting_199452	chr2_95815748_-	LINE	L1	L1PREC2
CAediting_199453	chr2_95815758_-	LINE	L1	L1PREC2
CAediting_199454	chr2_95815760_-	LINE	L1	L1PREC2
CAediting_199455	chr2_95815815_-	LINE	L1	L1PREC2
CAediting_199456	chr2_95815834_-	LINE	L1	L1PREC2
CAediting_199457	chr2_95815842_-	LINE	L1	L1PREC2
CAediting_199458	chr2_95815845_-	LINE	L1	L1PREC2
CAediting_199459	chr2_95815856_-	LINE	L1	L1PREC2
CAediting_199460	chr2_95815857_-	LINE	L1	L1PREC2
CAediting_199461	chr2_95815868_-	LINE	L1	L1PREC2
CAediting_199462	chr2_95815876_-	LINE	L1	L1PREC2
CAediting_199463	chr2_95815901_-	LINE	L1	L1PREC2

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RNA A-to-I editing events in the alternative splicing sites for LINC00342

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000232931.4.LINC00342.

Correlation between RNA A-to-I editing and PSI for ENSG00000232931.4.LINC00342.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LINC00342

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

LAML.CAediting_199367.ENSG00000232931.LINC00342.png
Soverview

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Protein coding region RNA A-to-I editings for LINC00342

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LINC00342

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_199405	chr2_95815380_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4540	95815375	95815381	7mer-m8	95815374	95815395	158	-21.49
CAediting_199407	chr2_95815396_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-2276-5p	95815393	95815400	8mer-1a	95815393	95815420	146	-18.18
CAediting_199407	chr2_95815396_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4469	95815392	95815398	7mer-m8	95815391	95815412	145	-20.63
CAediting_199407	chr2_95815396_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-642a-5p	95815393	95815399	7mer-m8	95815392	95815413	148	-14.66
CAediting_199407	chr2_95815396_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6728-3p	95815396	95815402	7mer-m8	95815395	95815415	140	-12.53
CAediting_199407	chr2_95815396_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-7106-3p	95815391	95815397	7mer-m8	95815390	95815412	140	-16.51
CAediting_199415	chr2_95815441_-	ENSG00000232931.4	ENST00000448494.1	hsa-let-7i-3p	95815439	95815445	7mer-m8	95815438	95815457	149	-15.81
CAediting_199417	chr2_95815453_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4530	95815452	95815458	7mer-m8	95815451	95815468	152	-23.25
CAediting_199417	chr2_95815453_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-7977	95815449	95815456	8mer-1a	95815449	95815468	146	-14.73
CAediting_199420	chr2_95815497_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-7849-3p	95815496	95815502	7mer-m8	95815495	95815516	151	-11.4
CAediting_199439	chr2_95815678_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3187-3p	95815674	95815680	7mer-m8	95815673	95815692	146	-20.83
CAediting_199447	chr2_95815710_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-224-5p	95815705	95815711	7mer-m8	95815704	95815733	147	-16.3
CAediting_199449	chr2_95815719_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3927-5p	95815714	95815720	7mer-m8	95815713	95815734	149	-12.07
CAediting_199453	chr2_95815758_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6715a-3p	95815753	95815759	7mer-m8	95815752	95815772	142	-9.37
CAediting_199455	chr2_95815815_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-2355-5p	95815812	95815818	7mer-m8	95815811	95815830	157	-20.97
CAediting_199396	chr2_95815338_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-600	95815338	95815344	7mer-m8	95815337	95815362	149	-14.93
CAediting_199396	chr2_95815338_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6728-3p	95815332	95815339	8mer-1a	95815332	95815351	142	-14.3
CAediting_199397	chr2_95815339_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3618	95815336	95815343	8mer-1a	95815336	95815355	153	-14.57
CAediting_199397	chr2_95815339_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6888-3p	95815334	95815340	7mer-m8	95815333	95815355	143	-12.72
CAediting_199400	chr2_95815355_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-337-3p	95815354	95815360	7mer-m8	95815353	95815374	145	-11.53
CAediting_199401	chr2_95815357_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-587	95815354	95815360	7mer-m8	95815353	95815373	147	-12.8
CAediting_199403	chr2_95815363_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-9902	95815361	95815368	8mer-1a	95815361	95815383	146	-13.38
CAediting_199416	chr2_95815450_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4668-3p	95815445	95815451	7mer-m8	95815444	95815466	146	-11.76
CAediting_199416	chr2_95815450_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-605-5p	95815446	95815452	7mer-m8	95815445	95815466	144	-12.46
CAediting_199419	chr2_95815493_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3156-3p	95815488	95815494	7mer-m8	95815487	95815507	146	-11.43
CAediting_199421	chr2_95815504_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3064-3p	95815500	95815507	8mer-1a	95815500	95815523	148	-16.77
CAediting_199424	chr2_95815540_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-5189-3p	95815538	95815544	7mer-m8	95815537	95815557	141	-16.82
CAediting_199426	chr2_95815559_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6821-3p	95815557	95815563	7mer-m8	95815556	95815576	140	-13.61
CAediting_199426	chr2_95815559_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-7161-5p	95815554	95815559	6mer	95815553	95815575	140	-14.35
CAediting_199427	chr2_95815582_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-1283	95815582	95815588	7mer-m8	95815581	95815602	149	-12.52
CAediting_199427	chr2_95815582_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-146a-5p	95815577	95815583	7mer-m8	95815576	95815597	147	-13.85
CAediting_199427	chr2_95815582_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-146b-5p	95815577	95815583	7mer-m8	95815576	95815598	147	-15.58
CAediting_199427	chr2_95815582_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-7153-5p	95815577	95815583	7mer-m8	95815576	95815598	156	-13.25
CAediting_199431	chr2_95815637_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-5581-3p	95815635	95815642	8mer-1a	95815635	95815656	151	-13.68
CAediting_199432	chr2_95815640_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-574-3p	95815639	95815645	7mer-m8	95815638	95815659	154	-19.2
CAediting_199433	chr2_95815643_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4641	95815640	95815647	8mer-1a	95815640	95815662	143	-14.52
CAediting_199434	chr2_95815659_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4511	95815654	95815660	7mer-m8	95815653	95815675	151	-15.37
CAediting_199436	chr2_95815668_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-34c-3p	95815664	95815670	7mer-m8	95815663	95815681	147	-10.78
CAediting_199437	chr2_95815669_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4698	95815668	95815675	8mer-1a	95815668	95815690	140	-11.93
CAediting_199438	chr2_95815674_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-337-5p	95815672	95815678	7mer-m8	95815671	95815689	149	-14.06
CAediting_199440	chr2_95815680_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-221-3p	95815676	95815681	6mer	95815675	95815698	144	-19.01
CAediting_199440	chr2_95815680_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6890-3p	95815680	95815686	7mer-m8	95815679	95815698	146	-14.03
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-330-3p	95815687	95815693	7mer-m8	95815686	95815710	145	-16.46
CAediting_199442	chr2_95815695_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-600	95815695	95815701	7mer-m8	95815694	95815720	158	-21.67
CAediting_199450	chr2_95815735_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-483-3p	95815733	95815739	7mer-m8	95815732	95815752	147	-14.44
CAediting_199452	chr2_95815748_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6501-3p	95815748	95815754	7mer-m8	95815747	95815769	153	-20.15
CAediting_199454	chr2_95815760_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-138-1-3p	95815757	95815763	7mer-m8	95815756	95815777	152	-14.12
CAediting_199454	chr2_95815760_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-606	95815755	95815761	7mer-m8	95815754	95815776	157	-11.84
CAediting_199459	chr2_95815856_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-371a-5p	95815856	95815862	7mer-m8	95815855	95815874	152	-18.31
CAediting_199460	chr2_95815857_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3145-5p	95815854	95815860	7mer-m8	95815853	95815874	150	-15.17
CAediting_199460	chr2_95815857_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-519d-5p	95815855	95815861	7mer-m8	95815854	95815878	140	-13.14
CAediting_199462	chr2_95815876_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6895-5p	95815871	95815877	7mer-m8	95815870	95815893	149	-23.05
CAediting_199457	chr2_95815842_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4716-5p	95815842	95815848	7mer-m8	95815841	95815862	148	-17.9
CAediting_199457	chr2_95815842_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-593-5p	95815838	95815844	7mer-m8	95815837	95815861	140	-23.37
CAediting_199457	chr2_95815842_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-767-5p	95815839	95815845	7mer-m8	95815838	95815859	160	-19.58
CAediting_199457	chr2_95815842_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-9851-3p	95815838	95815844	7mer-m8	95815837	95815858	140	-16.94
CAediting_199423	chr2_95815528_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6840-3p	95815526	95815532	7mer-m8	95815525	95815550	143	-23.15
CAediting_199461	chr2_95815868_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-140-3p	95815865	95815872	8mer-1a	95815865	95815889	160	-27.18

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_199447	chr2_95815710_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-101-5p	95815707	95815713	7mer-m8	95815706	95815727	145	-6.98
CAediting_199446	chr2_95815709_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-101-5p	95815707	95815713	7mer-m8	95815706	95815727	145	-6.98
CAediting_199427	chr2_95815582_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-10399-5p	95815581	95815586	6mer	95815580	95815602	142	-19.33
CAediting_199407	chr2_95815396_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-1237-3p	95815393	95815400	8mer-1a	95815393	95815413	150	-17.07
CAediting_199408	chr2_95815399_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-1237-3p	95815393	95815400	8mer-1a	95815393	95815413	150	-17.07
CAediting_199462	chr2_95815876_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-139-5p	95815875	95815881	7mer-m8	95815874	95815896	145	-14.74
CAediting_199415	chr2_95815441_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-19a-3p	95815439	95815446	8mer-1a	95815439	95815466	145	-14.71
CAediting_199415	chr2_95815441_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-19b-3p	95815439	95815446	8mer-1a	95815439	95815466	149	-14.55
CAediting_199456	chr2_95815834_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3135b	95815832	95815838	7mer-m8	95815831	95815851	141	-16.95
CAediting_199426	chr2_95815559_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3156-5p	95815555	95815561	7mer-m8	95815554	95815575	152	-14.75
CAediting_199456	chr2_95815834_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-320a-3p	95815829	95815835	7mer-m8	95815828	95815849	146	-16.73
CAediting_199456	chr2_95815834_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-320b	95815829	95815835	7mer-m8	95815828	95815849	146	-16.37
CAediting_199456	chr2_95815834_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-320c	95815829	95815835	7mer-m8	95815828	95815847	146	-13.26
CAediting_199456	chr2_95815834_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-320d	95815829	95815835	7mer-m8	95815828	95815846	146	-13.39
CAediting_199417	chr2_95815453_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-384	95815449	95815455	7mer-m8	95815448	95815467	146	-11.46
CAediting_199416	chr2_95815450_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-384	95815449	95815455	7mer-m8	95815448	95815467	146	-11.46
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-3973	95815687	95815693	7mer-m8	95815686	95815708	140	-8.72
CAediting_199456	chr2_95815834_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4429	95815829	95815835	7mer-m8	95815828	95815847	146	-18.21
CAediting_199421	chr2_95815504_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-466	95815504	95815509	6mer	95815503	95815525	140	-8.71
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548ad-5p	95815688	95815694	7mer-m8	95815687	95815707	151	-8.21
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548ae-5p	95815688	95815694	7mer-m8	95815687	95815707	151	-8.21
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548ak	95815688	95815694	7mer-m8	95815687	95815708	147	-9.58
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548am-5p	95815688	95815694	7mer-m8	95815687	95815709	155	-13.18
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548ap-5p	95815688	95815694	7mer-m8	95815687	95815706	153	-10.96
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548aq-5p	95815688	95815694	7mer-m8	95815687	95815709	151	-9.42
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548au-5p	95815688	95815694	7mer-m8	95815687	95815708	155	-12.97
CAediting_199415	chr2_95815441_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548aw	95815441	95815447	7mer-m8	95815440	95815460	149	-15.92
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548ay-5p	95815688	95815694	7mer-m8	95815687	95815708	151	-9.6
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548b-5p	95815688	95815694	7mer-m8	95815687	95815709	151	-9.05
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548bb-5p	95815688	95815694	7mer-m8	95815687	95815709	147	-7.28
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548c-5p	95815688	95815694	7mer-m8	95815687	95815709	155	-13.18
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548d-5p	95815688	95815694	7mer-m8	95815687	95815709	151	-9.81
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548h-5p	95815688	95815694	7mer-m8	95815687	95815709	147	-9.18
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548j-5p	95815688	95815694	7mer-m8	95815687	95815709	153	-11.68
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548o-5p	95815688	95815694	7mer-m8	95815687	95815709	155	-13.18
CAediting_199462	chr2_95815876_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548v	95815874	95815880	7mer-m8	95815873	95815894	155	-17.14
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548w	95815688	95815694	7mer-m8	95815687	95815710	147	-10.95
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548y	95815688	95815694	7mer-m8	95815687	95815709	147	-7.88
CAediting_199441	chr2_95815692_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-559	95815688	95815694	7mer-m8	95815687	95815706	149	-8.2
CAediting_199408	chr2_95815399_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6071	95815396	95815403	8mer-1a	95815396	95815414	140	-14.18
CAediting_199409	chr2_95815402_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6071	95815396	95815403	8mer-1a	95815396	95815414	140	-14.18
CAediting_199450	chr2_95815735_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-670-3p	95815735	95815741	7mer-m8	95815734	95815754	146	-12.97
CAediting_199451	chr2_95815739_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-670-3p	95815735	95815741	7mer-m8	95815734	95815754	146	-12.97
CAediting_199433	chr2_95815643_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6847-3p	95815640	95815647	8mer-1a	95815640	95815661	143	-11.12
CAediting_199448	chr2_95815716_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6883-3p	95815712	95815718	7mer-m8	95815711	95815731	144	-10.5
CAediting_199408	chr2_95815399_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-93-3p	95815397	95815404	8mer-1a	95815397	95815415	149	-13.59
CAediting_199409	chr2_95815402_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-93-3p	95815397	95815404	8mer-1a	95815397	95815415	149	-13.59
CAediting_199458	chr2_95815845_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-96-3p	95815841	95815847	7mer-m8	95815840	95815864	141	-12.15
CAediting_199457	chr2_95815842_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-96-3p	95815841	95815847	7mer-m8	95815840	95815864	141	-12.15

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_688080	chr9_63819626_+	ENSG00000232931.4	ENST00000448494.1	hsa-miR-4477b	95816174	95816180	7mer-m8	95816173	95816193	166	-17.7
CAediting_1229414	chr17_67471546_+	ENSG00000232931.4	ENST00000412393.4	hsa-miR-548aa	95807268	95807274	7mer-m8	95807267	95807291	140	-10.6
CAediting_1399425	chr20_1392958_-	ENSG00000232931.4	ENST00000412393.4	hsa-miR-6869-5p	95814124	95814131	8mer-1a	95814124	95814144	154	-21.57
CAediting_228905	chr2_188297554_+	ENSG00000232931.4	ENST00000412393.4	hsa-miR-561-3p	95807261	95807266	6mer	95807260	95807283	153	-20.38
CAediting_1229414	chr17_67471546_+	ENSG00000232931.4	ENST00000448494.1	hsa-miR-548aa	95807268	95807274	7mer-m8	95807267	95807291	140	-10.6
CAediting_1399425	chr20_1392958_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-6869-5p	95814124	95814131	8mer-1a	95814124	95814144	154	-21.57
CAediting_228905	chr2_188297554_+	ENSG00000232931.4	ENST00000448494.1	hsa-miR-561-3p	95807261	95807266	6mer	95807260	95807283	153	-20.38
CAediting_228905	chr2_188297554_+	ENSG00000232931.4	ENST00000448494.1	hsa-miR-561-3p	95815956	95815963	8mer-1a	95815956	95815986	146	-14.94

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1368054	chr19_46709310_-	ENSG00000232931.4	ENST00000448494.1	hsa-miR-320e	95815830	95815836	7mer-m8	95815829	95815846	141	-13.4

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LINC00342

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000448494.1	lincRNA

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_199396	ENST00000448494.1	chr2_95815338_-	-657.00	-656.80	-703.60
CAediting_199397	ENST00000448494.1	chr2_95815339_-	-657.20	-656.80	-703.60
CAediting_199398	ENST00000448494.1	chr2_95815351_-	-656.80	-656.80	-703.60
CAediting_199399	ENST00000448494.1	chr2_95815354_-	-660.30	-656.80	-703.60
CAediting_199400	ENST00000448494.1	chr2_95815355_-	-658.20	-656.80	-703.60
CAediting_199401	ENST00000448494.1	chr2_95815357_-	-659.50	-656.80	-703.60
CAediting_199402	ENST00000448494.1	chr2_95815359_-	-656.80	-656.80	-703.60
CAediting_199403	ENST00000448494.1	chr2_95815363_-	-658.00	-656.80	-703.60
CAediting_199404	ENST00000448494.1	chr2_95815375_-	-657.90	-656.80	-703.60
CAediting_199405	ENST00000448494.1	chr2_95815380_-	-656.70	-656.80	-703.60
CAediting_199406	ENST00000448494.1	chr2_95815381_-	-658.90	-656.80	-703.60
CAediting_199407	ENST00000448494.1	chr2_95815396_-	-658.40	-656.80	-703.60
CAediting_199408	ENST00000448494.1	chr2_95815399_-	-656.70	-656.80	-703.60
CAediting_199409	ENST00000448494.1	chr2_95815402_-	-657.60	-656.80	-703.60
CAediting_199410	ENST00000448494.1	chr2_95815405_-	-656.80	-656.80	-703.60
CAediting_199411	ENST00000448494.1	chr2_95815410_-	-656.80	-656.80	-703.60
CAediting_199412	ENST00000448494.1	chr2_95815422_-	-661.10	-656.80	-703.60
CAediting_199413	ENST00000448494.1	chr2_95815423_-	-659.20	-656.80	-703.60
CAediting_199414	ENST00000448494.1	chr2_95815439_-	-656.10	-656.80	-703.60
CAediting_199415	ENST00000448494.1	chr2_95815441_-	-658.90	-656.80	-703.60
CAediting_199416	ENST00000448494.1	chr2_95815450_-	-659.60	-656.80	-703.60
CAediting_199417	ENST00000448494.1	chr2_95815453_-	-659.10	-656.80	-703.60
CAediting_199418	ENST00000448494.1	chr2_95815471_-	-658.50	-656.80	-703.60
CAediting_199419	ENST00000448494.1	chr2_95815493_-	-658.80	-656.80	-703.60
CAediting_199420	ENST00000448494.1	chr2_95815497_-	-658.60	-656.80	-703.60
CAediting_199421	ENST00000448494.1	chr2_95815504_-	-656.70	-656.80	-703.60
CAediting_199422	ENST00000448494.1	chr2_95815524_-	-657.30	-656.80	-703.60
CAediting_199423	ENST00000448494.1	chr2_95815528_-	-661.60	-656.80	-703.60
CAediting_199424	ENST00000448494.1	chr2_95815540_-	-657.40	-656.80	-703.60
CAediting_199425	ENST00000448494.1	chr2_95815552_-	-657.00	-656.80	-703.60
CAediting_199426	ENST00000448494.1	chr2_95815559_-	-656.20	-656.80	-703.60
CAediting_199427	ENST00000448494.1	chr2_95815582_-	-658.20	-656.80	-703.60
CAediting_199428	ENST00000448494.1	chr2_95815605_-	-659.10	-656.80	-703.60
CAediting_199429	ENST00000448494.1	chr2_95815635_-	-657.10	-656.80	-703.60
CAediting_199430	ENST00000448494.1	chr2_95815636_-	-657.00	-656.80	-703.60
CAediting_199431	ENST00000448494.1	chr2_95815637_-	-661.40	-656.80	-703.60
CAediting_199432	ENST00000448494.1	chr2_95815640_-	-658.60	-656.80	-703.60
CAediting_199433	ENST00000448494.1	chr2_95815643_-	-660.90	-656.80	-703.60
CAediting_199434	ENST00000448494.1	chr2_95815659_-	-661.70	-656.80	-703.60
CAediting_199435	ENST00000448494.1	chr2_95815660_-	-658.40	-656.80	-703.60
CAediting_199436	ENST00000448494.1	chr2_95815668_-	-657.30	-656.80	-703.60
CAediting_199437	ENST00000448494.1	chr2_95815669_-	-661.00	-656.80	-703.60
CAediting_199438	ENST00000448494.1	chr2_95815674_-	-657.00	-656.80	-703.60
CAediting_199439	ENST00000448494.1	chr2_95815678_-	-659.40	-656.80	-703.60
CAediting_199440	ENST00000448494.1	chr2_95815680_-	-656.80	-656.80	-703.60
CAediting_199441	ENST00000448494.1	chr2_95815692_-	-656.80	-656.80	-703.60
CAediting_199442	ENST00000448494.1	chr2_95815695_-	-658.20	-656.80	-703.60
CAediting_199443	ENST00000448494.1	chr2_95815696_-	-656.90	-656.80	-703.60
CAediting_199444	ENST00000448494.1	chr2_95815697_-	-657.50	-656.80	-703.60
CAediting_199445	ENST00000448494.1	chr2_95815703_-	-656.40	-656.80	-703.60
CAediting_199446	ENST00000448494.1	chr2_95815709_-	-656.80	-656.80	-703.60
CAediting_199447	ENST00000448494.1	chr2_95815710_-	-658.30	-656.80	-703.60
CAediting_199448	ENST00000448494.1	chr2_95815716_-	-656.50	-656.80	-703.60
CAediting_199449	ENST00000448494.1	chr2_95815719_-	-659.80	-656.80	-703.60
CAediting_199450	ENST00000448494.1	chr2_95815735_-	-658.20	-656.80	-703.60
CAediting_199451	ENST00000448494.1	chr2_95815739_-	-660.40	-656.80	-703.60
CAediting_199452	ENST00000448494.1	chr2_95815748_-	-658.20	-656.80	-703.60
CAediting_199453	ENST00000448494.1	chr2_95815758_-	-661.10	-656.80	-703.60
CAediting_199454	ENST00000448494.1	chr2_95815760_-	-660.20	-656.80	-703.60
CAediting_199455	ENST00000448494.1	chr2_95815815_-	-656.50	-656.80	-703.60
CAediting_199456	ENST00000448494.1	chr2_95815834_-	-656.00	-656.80	-703.60
CAediting_199457	ENST00000448494.1	chr2_95815842_-	-656.80	-656.80	-703.60
CAediting_199458	ENST00000448494.1	chr2_95815845_-	-656.80	-656.80	-703.60
CAediting_199459	ENST00000448494.1	chr2_95815856_-	-657.50	-656.80	-703.60
CAediting_199460	ENST00000448494.1	chr2_95815857_-	-656.60	-656.80	-703.60
CAediting_199461	ENST00000448494.1	chr2_95815868_-	-658.30	-656.80	-703.60
CAediting_199462	ENST00000448494.1	chr2_95815876_-	-656.50	-656.80	-703.60
CAediting_199463	ENST00000448494.1	chr2_95815901_-	-656.10	-656.80	-703.60

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Relation with ADAR for LINC00342

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
BRCA	CAediting_199367	chr2_95808803_-	.	.	0.0129641243102112	0.316464086547998	.	.
BRCA	CAediting_199373	chr2_95808823_-	.	.	0.0147648412462872	0.282435103143669	.	.
LUAD	CAediting_199373	chr2_95808823_-	0.0145351739958902	0.2723213276716	.	.	.	.
LUAD	CAediting_199377	chr2_95808868_-	.	.	.	.	0.0462489444641537	0.277683335359515
BRCA	CAediting_199406	chr2_95815381_-	0.00364626578332723	0.128894481972881	.	.	.	.
CESC	CAediting_199406	chr2_95815381_-	.	.	.	.	0.026019340671881	0.233334714056068
SKCM	CAediting_199406	chr2_95815381_-	.	.	0.0263730960611513	0.254732455239565	.	.
SARC	CAediting_199406	chr2_95815381_-	.	.	0.0200630885730716	0.29008314387169	.	.
THYM	CAediting_199406	chr2_95815381_-	0.0345395292382169	0.278097737339927	.	.	.	.
LGG	CAediting_199413	chr2_95815423_-	.	.	0.00238101546409012	0.412404390563603	.	.
LUAD	CAediting_199420	chr2_95815497_-	.	.	.	.	5.0969731594362e-05	0.420126429421241

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Relation with cancer stages for LINC00342

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
BRCA	pathologic_stage	CAediting_199367	chr2_95808803_-	0.00394551475832503	0.369779019133055
BRCA	pathologic_stage	CAediting_199373	chr2_95808823_-	0.0326698751146351	0.250338597549328
CESC	clinical_stage	CAediting_199406	chr2_95815381_-	0.0418365641594108	0.213822616163745
ESCA	clinical_stage	CAediting_199406	chr2_95815381_-	0.0301722123272382	0.485068149137982
KIRP	clinical_stage	CAediting_199406	chr2_95815381_-	0.000764365422576361	0.589537630883807
KIRP	pathologic_stage	CAediting_199406	chr2_95815381_-	0.0369608826285355	0.305218519879645
OV	clinical_stage	CAediting_199406	chr2_95815381_-	0.047505950960439	0.228097614862033
THCA	pathologic_stage	CAediting_199406	chr2_95815381_-	0.00114394727618846	-0.446776150804937

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Relation with survival for LINC00342

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
CESC	CAediting_199406	chr2_95815381_-	0.00963964374554549	0.00673412	9601.53

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RelatedDrugs for LINC00342

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LINC00342

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene