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| Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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| The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: CTNNB1 (CAeditome ID:1499) |
Gene summary for CTNNB1 |
 Gene summary |
| Gene information | Gene symbol | CTNNB1 | Gene ID | 1499 |
| Gene name | catenin beta 1 | |
| Synonyms | CTNNB|EVR7|MRD19|NEDSDV|armadillo | |
| Cytomap | 3p22.1 | |
| Type of gene | protein-coding | |
| Description | catenin beta-1catenin (cadherin-associated protein), beta 1, 88kDa | |
| Modification date | 20210531 | |
| UniProtAcc | P35222 | |
| Context | - 31158229(Genome-wide identification and analysis of A-to-I RNA editing events in the malignantly transformed cell lines from bronchial epithelial cell line induced by alpha-particles radiation) |
| Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez |
| Gene | GO ID | GO term | PubMed ID |
| CTNNB1 | GO:0003713 | Catenin beta-1 | 11751639 |
| CTNNB1 | GO:0003713 | Catenin beta-1 | 12651860 |
| CTNNB1 | GO:0003713 | Catenin beta-1 | 18193033 |
| CTNNB1 | GO:0003713 | Catenin beta-1 | 9065402 |
| CTNNB1 | GO:0061629 | Catenin beta-1 | 12651860 |
| CTNNB1 | GO:0061629 | Catenin beta-1 | 18193033 |
| CTNNB1 | GO:0061629 | Catenin beta-1 | 18579517 |
| CTNNB1 | GO:0000209 | Catenin beta-1 | 29374064 |
| CTNNB1 | GO:0008285 | Catenin beta-1 | 12970740 |
| CTNNB1 | GO:0030997 | Catenin beta-1 | 18086858 |
| CTNNB1 | GO:0032355 | Catenin beta-1 | 15304487 |
| CTNNB1 | GO:0033234 | Catenin beta-1 | 22155184 |
| CTNNB1 | GO:0043065 | Catenin beta-1 | 12651860 |
| CTNNB1 | GO:0043065 | Catenin beta-1 | 12970740 |
| CTNNB1 | GO:0043161 | Catenin beta-1 | 29374064 |
| CTNNB1 | GO:0043525 | Catenin beta-1 | 19591802 |
| CTNNB1 | GO:0045893 | Catenin beta-1 | 12970740 |
| CTNNB1 | GO:0045893 | Catenin beta-1 | 18787224 |
| CTNNB1 | GO:0045944 | Catenin beta-1 | 11751639 |
| CTNNB1 | GO:0045944 | Catenin beta-1 | 12651860 |
| CTNNB1 | GO:0045944 | Catenin beta-1 | 14660579 |
| CTNNB1 | GO:0045944 | Catenin beta-1 | 18193033 |
| CTNNB1 | GO:0045944 | Catenin beta-1 | 9065402 |
| CTNNB1 | GO:0060070 | Catenin beta-1 | 10644691 |
| CTNNB1 | GO:0060070 | Catenin beta-1 | 12937339 |
| CTNNB1 | GO:0060070 | Catenin beta-1 | 19187541 |
| CTNNB1 | GO:0071681 | Catenin beta-1 | 10868478 |
| CTNNB1 | GO:0090279 | Catenin beta-1 | 19996314 |
| CTNNB1 | GO:2000008 | Catenin beta-1 | 19996314 |
| CTNNB1 | GO:0000791 | Catenin beta-1 | 22723415 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 10980594 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 16858403 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 18193033 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 18756595 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 18787224 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 19095296 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 19187541 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 28829046 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 29367600 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 29739711 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 9707618 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 11793365 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 12138115 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 12937339 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 12970740 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 18787224 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 19095296 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 19591802 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 22467863 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 29739711 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 9707618 |
| CTNNB1 | GO:0005813 | Catenin beta-1 | 18086858 |
| CTNNB1 | GO:0005813 | Catenin beta-1 | 20300119 |
| CTNNB1 | GO:0005829 | Catenin beta-1 | 10980594 |
| CTNNB1 | GO:0005829 | Catenin beta-1 | 19187541 |
| CTNNB1 | GO:0005886 | Catenin beta-1 | 0000052 |
| CTNNB1 | GO:0005886 | Catenin beta-1 | 12138115 |
| CTNNB1 | GO:0005886 | Catenin beta-1 | 12970740 |
| CTNNB1 | GO:0005911 | Catenin beta-1 | 19151727 |
| CTNNB1 | GO:0005911 | Catenin beta-1 | 19996314 |
| CTNNB1 | GO:0005912 | Catenin beta-1 | 10403777 |
| CTNNB1 | GO:0005912 | Catenin beta-1 | 18086858 |
| CTNNB1 | GO:0005912 | Catenin beta-1 | 19101069 |
| CTNNB1 | GO:0005912 | Catenin beta-1 | 20086044 |
| CTNNB1 | GO:0005912 | Catenin beta-1 | 22855531 |
| CTNNB1 | GO:0005938 | Catenin beta-1 | 19038973 |
| CTNNB1 | GO:0016323 | Catenin beta-1 | 24862762 |
| CTNNB1 | GO:0016328 | Catenin beta-1 | 12072559 |
| CTNNB1 | GO:0016328 | Catenin beta-1 | 22855531 |
| CTNNB1 | GO:0030054 | Catenin beta-1 | 19038973 |
| CTNNB1 | GO:0030054 | Catenin beta-1 | 20412773 |
| CTNNB1 | GO:0048471 | Catenin beta-1 | 19038973 |
| CTNNB1 | GO:0048471 | Catenin beta-1 | 19038973 |
| CTNNB1 | GO:0071944 | Catenin beta-1 | 19038973 |
| CTNNB1 | GO:0005634 | Catenin beta-1 | 15040835 |
| CTNNB1 | GO:0005667 | Catenin beta-1 | 11751639 |
| CTNNB1 | GO:0005737 | Catenin beta-1 | 7806582 |
| CTNNB1 | GO:0016342 | Catenin beta-1 | 18593713 |
| CTNNB1 | GO:0016342 | Catenin beta-1 | 20302655 |
| CTNNB1 | GO:0016342 | Catenin beta-1 | 28051089 |
| CTNNB1 | GO:0016342 | Catenin beta-1 | 7650039 |
| CTNNB1 | GO:0030877 | Catenin beta-1 | 16188939 |
| CTNNB1 | GO:0030877 | Catenin beta-1 | 8638126 |
| CTNNB1 | GO:0032991 | Catenin beta-1 | 22083958 |
| CTNNB1 | GO:0032993 | Catenin beta-1 | 10825188 |
| CTNNB1 | GO:0070369 | Catenin beta-1 | 12651860 |
| CTNNB1 | GO:0070369 | Catenin beta-1 | 9065401 |
| CTNNB1 | GO:0070369 | Catenin beta-1 | 9065402 |
| CTNNB1 | GO:1990907 | Catenin beta-1 | 28296634 |
Top |
RNA A-to-I events for CTNNB1 |
| RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure. |
 |
| RNA editing frequencies across 33 cancers of gene: ENSG00000168036.15 |
| RNA A-to-I editing events in Cancer. |
| CAediting_269360(41205475, +), CAediting_269361(41205485, +), CAediting_269362(41205526, +), CAediting_269363(41205529, +), CAediting_269364(41205537, +), CAediting_269365(41205545, +), CAediting_269366(41205561, +), CAediting_269367(41205572, +), CAediting_269368(41205579, +), CAediting_269369(41210199, +), CAediting_269370(41210267, +), CAediting_269371(41210276, +), CAediting_269372(41210307, +), CAediting_269373(41210333, +), CAediting_269374(41210339, +), CAediting_269375(41210343, +), CAediting_269376(41210356, +), CAediting_269377(41210360, +), CAediting_269378(41210365, +), CAediting_269379(41210374, +), CAediting_269380(41210375, +), CAediting_269381(41210436, +), CAediting_269382(41210809, +), CAediting_269383(41210821, +), CAediting_269384(41210829, +), CAediting_269385(41210889, +), CAediting_269386(41210890, +), CAediting_269387(41210902, +), CAediting_269388(41210916, +), CAediting_269389(41210919, +), CAediting_269390(41210929, +), CAediting_269391(41210934, +), CAediting_269392(41210938, +), CAediting_269393(41210956, +), CAediting_269394(41210976, +), CAediting_269395(41210978, +), CAediting_269396(41210982, +), CAediting_269397(41211031, +), CAediting_269398(41211054, +), CAediting_269399(41211055, +), CAediting_269400(41211061, +), CAediting_269401(41211067, +), CAediting_269402(41215106, +), CAediting_269403(41215114, +), CAediting_269404(41215123, +), CAediting_269405(41215128, +), CAediting_269406(41215174, +), CAediting_269407(41215200, +), CAediting_269408(41215263, +), CAediting_269409(41215264, +), CAediting_269410(41215269, +), CAediting_269411(41215302, +), CAediting_269412(41215303, +), CAediting_269413(41215304, +), CAediting_269414(41215332, +), CAediting_269415(41215333, +), CAediting_269416(41215353, +), CAediting_269417(41218636, +), CAediting_269418(41218654, +), CAediting_269419(41218662, +), CAediting_269420(41218663, +), CAediting_269421(41218696, +), CAediting_269422(41218737, +), CAediting_269423(41218766, +), CAediting_269424(41218779, +), CAediting_269425(41218791, +), CAediting_269426(41218793, +), CAediting_269427(41218795, +), CAediting_269428(41218800, +), CAediting_269429(41218819, +), CAediting_269430(41218831, +), CAediting_269431(41218840, +), CAediting_269432(41221365, +), CAediting_269433(41221367, +), CAediting_269434(41221371, +), CAediting_269435(41221414, +), CAediting_269436(41221416, +), CAediting_269437(41221424, +), CAediting_269438(41221459, +), CAediting_269439(41221468, +), CAediting_269440(41221475, +), CAediting_269441(41221483, +), CAediting_269442(41221487, +), CAediting_269443(41221491, +), CAediting_269444(41221536, +), CAediting_269445(41221553, +), CAediting_269446(41221607, +), CAediting_269447(41221616, +), CAediting_269448(41237293, +), CAediting_269449(41237313, +), CAediting_269450(41237402, +), CAediting_269451(41237429, +), CAediting_269452(41237431, +), |
Top |
RNA editing positional annotations for CTNNB1 using Annovar |
| Protein coding RNA editing(s). |
| CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
| Gene structure information of RNA editing(s). |
| CAeditome ID | Position | Variant type |
| CAediting_269360 | chr3_41205475_+ | intronic |
| CAediting_269361 | chr3_41205485_+ | intronic |
| CAediting_269362 | chr3_41205526_+ | intronic |
| CAediting_269363 | chr3_41205529_+ | intronic |
| CAediting_269364 | chr3_41205537_+ | intronic |
| CAediting_269365 | chr3_41205545_+ | intronic |
| CAediting_269366 | chr3_41205561_+ | intronic |
| CAediting_269367 | chr3_41205572_+ | intronic |
| CAediting_269368 | chr3_41205579_+ | intronic |
| CAediting_269369 | chr3_41210199_+ | intronic |
| CAediting_269370 | chr3_41210267_+ | intronic |
| CAediting_269371 | chr3_41210276_+ | intronic |
| CAediting_269372 | chr3_41210307_+ | intronic |
| CAediting_269373 | chr3_41210333_+ | intronic |
| CAediting_269374 | chr3_41210339_+ | intronic |
| CAediting_269375 | chr3_41210343_+ | intronic |
| CAediting_269376 | chr3_41210356_+ | intronic |
| CAediting_269377 | chr3_41210360_+ | intronic |
| CAediting_269378 | chr3_41210365_+ | intronic |
| CAediting_269379 | chr3_41210374_+ | intronic |
| CAediting_269380 | chr3_41210375_+ | intronic |
| CAediting_269381 | chr3_41210436_+ | intronic |
| CAediting_269382 | chr3_41210809_+ | intronic |
| CAediting_269383 | chr3_41210821_+ | intronic |
| CAediting_269384 | chr3_41210829_+ | intronic |
| CAediting_269385 | chr3_41210889_+ | intronic |
| CAediting_269386 | chr3_41210890_+ | intronic |
| CAediting_269387 | chr3_41210902_+ | intronic |
| CAediting_269388 | chr3_41210916_+ | intronic |
| CAediting_269389 | chr3_41210919_+ | intronic |
| CAediting_269390 | chr3_41210929_+ | intronic |
| CAediting_269391 | chr3_41210934_+ | intronic |
| CAediting_269392 | chr3_41210938_+ | intronic |
| CAediting_269393 | chr3_41210956_+ | intronic |
| CAediting_269394 | chr3_41210976_+ | intronic |
| CAediting_269395 | chr3_41210978_+ | intronic |
| CAediting_269396 | chr3_41210982_+ | intronic |
| CAediting_269397 | chr3_41211031_+ | intronic |
| CAediting_269398 | chr3_41211054_+ | intronic |
| CAediting_269399 | chr3_41211055_+ | intronic |
| CAediting_269400 | chr3_41211061_+ | intronic |
| CAediting_269401 | chr3_41211067_+ | intronic |
| CAediting_269402 | chr3_41215106_+ | intronic |
| CAediting_269403 | chr3_41215114_+ | intronic |
| CAediting_269404 | chr3_41215123_+ | intronic |
| CAediting_269405 | chr3_41215128_+ | intronic |
| CAediting_269406 | chr3_41215174_+ | intronic |
| CAediting_269407 | chr3_41215200_+ | intronic |
| CAediting_269408 | chr3_41215263_+ | intronic |
| CAediting_269409 | chr3_41215264_+ | intronic |
| CAediting_269410 | chr3_41215269_+ | intronic |
| CAediting_269411 | chr3_41215302_+ | intronic |
| CAediting_269412 | chr3_41215303_+ | intronic |
| CAediting_269413 | chr3_41215304_+ | intronic |
| CAediting_269414 | chr3_41215332_+ | intronic |
| CAediting_269415 | chr3_41215333_+ | intronic |
| CAediting_269416 | chr3_41215353_+ | intronic |
| CAediting_269417 | chr3_41218636_+ | intronic |
| CAediting_269418 | chr3_41218654_+ | intronic |
| CAediting_269419 | chr3_41218662_+ | intronic |
| CAediting_269420 | chr3_41218663_+ | intronic |
| CAediting_269421 | chr3_41218696_+ | intronic |
| CAediting_269422 | chr3_41218737_+ | intronic |
| CAediting_269423 | chr3_41218766_+ | intronic |
| CAediting_269424 | chr3_41218779_+ | intronic |
| CAediting_269425 | chr3_41218791_+ | intronic |
| CAediting_269426 | chr3_41218793_+ | intronic |
| CAediting_269427 | chr3_41218795_+ | intronic |
| CAediting_269428 | chr3_41218800_+ | intronic |
| CAediting_269429 | chr3_41218819_+ | intronic |
| CAediting_269430 | chr3_41218831_+ | intronic |
| CAediting_269431 | chr3_41218840_+ | intronic |
| CAediting_269432 | chr3_41221365_+ | intronic |
| CAediting_269433 | chr3_41221367_+ | intronic |
| CAediting_269434 | chr3_41221371_+ | intronic |
| CAediting_269435 | chr3_41221414_+ | intronic |
| CAediting_269436 | chr3_41221416_+ | intronic |
| CAediting_269437 | chr3_41221424_+ | intronic |
| CAediting_269438 | chr3_41221459_+ | intronic |
| CAediting_269439 | chr3_41221468_+ | intronic |
| CAediting_269440 | chr3_41221475_+ | intronic |
| CAediting_269441 | chr3_41221483_+ | intronic |
| CAediting_269442 | chr3_41221487_+ | intronic |
| CAediting_269443 | chr3_41221491_+ | intronic |
| CAediting_269444 | chr3_41221536_+ | intronic |
| CAediting_269445 | chr3_41221553_+ | intronic |
| CAediting_269446 | chr3_41221607_+ | intronic |
| CAediting_269447 | chr3_41221616_+ | intronic |
| CAediting_269448 | chr3_41237293_+ | ncRNA_exonic |
| CAediting_269449 | chr3_41237313_+ | ncRNA_exonic |
| CAediting_269450 | chr3_41237402_+ | ncRNA_exonic |
| CAediting_269451 | chr3_41237429_+ | ncRNA_exonic |
| CAediting_269452 | chr3_41237431_+ | ncRNA_exonic |
| Repat-regional RNA editing(s). |
| CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
| CAediting_269360 | chr3_41205475_+ | SINE | Alu | AluSx1 |
| CAediting_269361 | chr3_41205485_+ | SINE | Alu | AluSx1 |
| CAediting_269362 | chr3_41205526_+ | SINE | Alu | AluSx1 |
| CAediting_269363 | chr3_41205529_+ | SINE | Alu | AluSx1 |
| CAediting_269364 | chr3_41205537_+ | SINE | Alu | AluSx1 |
| CAediting_269365 | chr3_41205545_+ | SINE | Alu | AluSx1 |
| CAediting_269366 | chr3_41205561_+ | SINE | Alu | AluSx1 |
| CAediting_269367 | chr3_41205572_+ | SINE | Alu | AluSx1 |
| CAediting_269368 | chr3_41205579_+ | SINE | Alu | AluSx1 |
| CAediting_269369 | chr3_41210199_+ | SINE | Alu | AluY |
| CAediting_269370 | chr3_41210267_+ | SINE | Alu | AluY |
| CAediting_269371 | chr3_41210276_+ | SINE | Alu | AluY |
| CAediting_269372 | chr3_41210307_+ | SINE | Alu | AluY |
| CAediting_269373 | chr3_41210333_+ | SINE | Alu | AluY |
| CAediting_269374 | chr3_41210339_+ | SINE | Alu | AluY |
| CAediting_269375 | chr3_41210343_+ | SINE | Alu | AluY |
| CAediting_269376 | chr3_41210356_+ | SINE | Alu | AluY |
| CAediting_269377 | chr3_41210360_+ | SINE | Alu | AluY |
| CAediting_269378 | chr3_41210365_+ | SINE | Alu | AluY |
| CAediting_269379 | chr3_41210374_+ | SINE | Alu | AluY |
| CAediting_269380 | chr3_41210375_+ | SINE | Alu | AluY |
| CAediting_269381 | chr3_41210436_+ | SINE | Alu | AluY |
| CAediting_269382 | chr3_41210809_+ | SINE | Alu | AluJr4 |
| CAediting_269383 | chr3_41210821_+ | SINE | Alu | AluJr4 |
| CAediting_269384 | chr3_41210829_+ | SINE | Alu | AluJr4 |
| CAediting_269385 | chr3_41210889_+ | SINE | Alu | AluJr4 |
| CAediting_269386 | chr3_41210890_+ | SINE | Alu | AluJr4 |
| CAediting_269387 | chr3_41210902_+ | SINE | Alu | AluJr4 |
| CAediting_269388 | chr3_41210916_+ | SINE | Alu | AluJr4 |
| CAediting_269389 | chr3_41210919_+ | SINE | Alu | AluJr4 |
| CAediting_269390 | chr3_41210929_+ | SINE | Alu | AluJr4 |
| CAediting_269391 | chr3_41210934_+ | SINE | Alu | AluJr4 |
| CAediting_269392 | chr3_41210938_+ | SINE | Alu | AluJr4 |
| CAediting_269393 | chr3_41210956_+ | SINE | Alu | AluJr4 |
| CAediting_269394 | chr3_41210976_+ | SINE | Alu | AluJr4 |
| CAediting_269395 | chr3_41210978_+ | SINE | Alu | AluJr4 |
| CAediting_269396 | chr3_41210982_+ | SINE | Alu | AluJr4 |
| CAediting_269397 | chr3_41211031_+ | SINE | Alu | AluJr4 |
| CAediting_269398 | chr3_41211054_+ | SINE | Alu | AluJr4 |
| CAediting_269399 | chr3_41211055_+ | SINE | Alu | AluJr4 |
| CAediting_269400 | chr3_41211061_+ | SINE | Alu | AluJr4 |
| CAediting_269401 | chr3_41211067_+ | SINE | Alu | AluJr4 |
| CAediting_269402 | chr3_41215106_+ | SINE | Alu | AluSg7 |
| CAediting_269403 | chr3_41215114_+ | SINE | Alu | AluSg7 |
| CAediting_269404 | chr3_41215123_+ | SINE | Alu | AluSg7 |
| CAediting_269405 | chr3_41215128_+ | SINE | Alu | AluSg7 |
| CAediting_269406 | chr3_41215174_+ | SINE | Alu | AluSg7 |
| CAediting_269407 | chr3_41215200_+ | SINE | Alu | AluSg7 |
| CAediting_269408 | chr3_41215263_+ | SINE | Alu | AluSg7 |
| CAediting_269409 | chr3_41215264_+ | SINE | Alu | AluSg7 |
| CAediting_269410 | chr3_41215269_+ | SINE | Alu | AluSg7 |
| CAediting_269411 | chr3_41215302_+ | SINE | Alu | AluSg7 |
| CAediting_269412 | chr3_41215303_+ | SINE | Alu | AluSg7 |
| CAediting_269413 | chr3_41215304_+ | SINE | Alu | AluSg7 |
| CAediting_269414 | chr3_41215332_+ | SINE | Alu | AluSg7 |
| CAediting_269415 | chr3_41215333_+ | SINE | Alu | AluSg7 |
| CAediting_269416 | chr3_41215353_+ | SINE | Alu | AluSg7 |
| CAediting_269417 | chr3_41218636_+ | SINE | Alu | AluJb |
| CAediting_269418 | chr3_41218654_+ | SINE | Alu | AluJb |
| CAediting_269419 | chr3_41218662_+ | SINE | Alu | AluJb |
| CAediting_269420 | chr3_41218663_+ | SINE | Alu | AluJb |
| CAediting_269421 | chr3_41218696_+ | SINE | Alu | AluJb |
| CAediting_269422 | chr3_41218737_+ | SINE | Alu | AluJb |
| CAediting_269423 | chr3_41218766_+ | SINE | Alu | AluJb |
| CAediting_269424 | chr3_41218779_+ | SINE | Alu | AluJb |
| CAediting_269425 | chr3_41218791_+ | SINE | Alu | AluJb |
| CAediting_269426 | chr3_41218793_+ | SINE | Alu | AluJb |
| CAediting_269427 | chr3_41218795_+ | SINE | Alu | AluJb |
| CAediting_269428 | chr3_41218800_+ | SINE | Alu | AluJb |
| CAediting_269429 | chr3_41218819_+ | SINE | Alu | AluJb |
| CAediting_269430 | chr3_41218831_+ | SINE | Alu | AluJb |
| CAediting_269431 | chr3_41218840_+ | SINE | Alu | AluJb |
| CAediting_269432 | chr3_41221365_+ | SINE | Alu | AluJr4 |
| CAediting_269433 | chr3_41221367_+ | SINE | Alu | AluJr4 |
| CAediting_269434 | chr3_41221371_+ | SINE | Alu | AluJr4 |
| CAediting_269435 | chr3_41221414_+ | SINE | Alu | AluJr4 |
| CAediting_269436 | chr3_41221416_+ | SINE | Alu | AluJr4 |
| CAediting_269437 | chr3_41221424_+ | SINE | Alu | AluJr4 |
| CAediting_269438 | chr3_41221459_+ | SINE | Alu | AluJr4 |
| CAediting_269439 | chr3_41221468_+ | SINE | Alu | AluJr4 |
| CAediting_269440 | chr3_41221475_+ | SINE | Alu | AluJr4 |
| CAediting_269441 | chr3_41221483_+ | SINE | Alu | AluJr4 |
| CAediting_269442 | chr3_41221487_+ | SINE | Alu | AluJr4 |
| CAediting_269443 | chr3_41221491_+ | SINE | Alu | AluJr4 |
| CAediting_269444 | chr3_41221536_+ | SINE | Alu | AluJr4 |
| CAediting_269445 | chr3_41221553_+ | SINE | Alu | AluJr4 |
| CAediting_269446 | chr3_41221607_+ | SINE | Alu | AluJr4 |
| CAediting_269447 | chr3_41221616_+ | SINE | Alu | AluJr4 |
| CAediting_269448 | chr3_41237293_+ | SINE | Alu | AluJr4 |
| CAediting_269449 | chr3_41237313_+ | SINE | Alu | AluJr4 |
| CAediting_269450 | chr3_41237402_+ | SINE | Alu | AluJr4 |
| CAediting_269451 | chr3_41237429_+ | SINE | Alu | AluJr4 |
| CAediting_269452 | chr3_41237431_+ | SINE | Alu | AluJr4 |
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RNA A-to-I editing events in the alternative splicing sites for CTNNB1 |
| RNA A-to-I editing(s) in the alternative splicing sites. |
| AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
| Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000168036.15.CTNNB1. |
| Correlation between RNA A-to-I editing and PSI for ENSG00000168036.15.CTNNB1. |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CTNNB1 |
| Differential gene expressions between RNA A-to-I edited and non-edited tumor samples. * The grey color means N/A. |
| Correlation between RNA A-to-I editing and gene expression. |
| - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples. * Click on the image to enlarge it in a new window. |
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Protein coding region RNA A-to-I editings for CTNNB1 |
| - Lollipop plot for RNA A-to-I editings across protein structure. * Click on the image to enlarge it in a new window. |
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The effects of the RNA editing to the miRNA binding sites for CTNNB1 |
| **If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
| RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA gained miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in lncRNA lost miRNA binding sites. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to lncRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to lncRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA. |
| CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
| CAediting_396018 | chr5_1062918_- | ENSG00000168036.15 | ENST00000396185 | hsa-miR-4635 | 41240386 | 41240393 | 8mer-1a | 41240373 | 41240393 | 141 | -14.8 |
| CAediting_396018 | chr5_1062918_- | ENSG00000168036.15 | ENST00000396183 | hsa-miR-4635 | 41240386 | 41240393 | 8mer-1a | 41240373 | 41240393 | 141 | -14.8 |
| Differentially expressed gene-miRNA network |
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The effects of the RNA editing to the stability of the RNA structures for CTNNB1 |
| - RNA A-to-I editing in mRNA. * Click on the image to enlarge it in a new window. |
| ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
| ENST00000482042.1 | retained_intron |  |  |
| RNA A-to-I editing in RNA structures for Minimum free energy (MFE). |
| CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
| CAediting_269448 | ENST00000482042.1 | chr3_41237293_+ | -365.70 | -364.30 | -371.60 |
| CAediting_269449 | ENST00000482042.1 | chr3_41237313_+ | -365.90 | -364.30 | -371.60 |
| CAediting_269450 | ENST00000482042.1 | chr3_41237402_+ | -368.00 | -364.30 | -371.60 |
| CAediting_269451 | ENST00000482042.1 | chr3_41237429_+ | -369.00 | -364.30 | -371.60 |
| CAediting_269452 | ENST00000482042.1 | chr3_41237431_+ | -368.30 | -364.30 | -371.60 |
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Relation with ADAR for CTNNB1 |
| Correlation between ADAR gene expression and RNA editing frequency |
| Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
| LAML | CAediting_269440 | chr3_41221475_+ | . | . | . | . | 0.0152436307424366 | 0.289012272284366 |
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Relation with cancer stages for CTNNB1 |
| Correlation between Cancer stages and RNA editing frequency |
| Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
| KIRC | pathologic_stage | CAediting_269440 | chr3_41221475_+ | 0.0424147496372453 | 0.231904695036537 |
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Relation with survival for CTNNB1 |
| Correlation between RNA editing and survival |
| Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for CTNNB1 |
| Approved drugs targeting this gene. (DrugBank Version 5.1.8 2021-01-03) |
| Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
| CTNNB1 | P35222 | DB03904 | Urea | Catenin beta-1 | SmallMoleculeDrug | approved|investigational |
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RelatedDiseases for CTNNB1 |
| Diseases associated with this gene. (DisGeNet 7.0) |
| Gene | Disease ID | Disease name | # pubmeds | Source |
| CTNNB1 | C0007102 | Malignant tumor of colon | 9 | CTD_human |
| CTNNB1 | C0009375 | Colonic Neoplasms | 9 | CTD_human |
| CTNNB1 | C3554449 | MENTAL RETARDATION, AUTOSOMAL DOMINANT 19 | 6 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
| CTNNB1 | C0009402 | Colorectal Carcinoma | 5 | CTD_human;UNIPROT |
| CTNNB1 | C2239176 | Liver carcinoma | 5 | CGI;CTD_human;GENOMICS_ENGLAND;UNIPROT |
| CTNNB1 | C0009404 | Colorectal Neoplasms | 4 | CTD_human |
| CTNNB1 | C0001418 | Adenocarcinoma | 3 | CTD_human |
| CTNNB1 | C0019207 | Hepatoma, Morris | 3 | CTD_human |
| CTNNB1 | C0019208 | Hepatoma, Novikoff | 3 | CTD_human |
| CTNNB1 | C0023904 | Liver Neoplasms, Experimental | 3 | CTD_human |
| CTNNB1 | C0086404 | Experimental Hepatoma | 3 | CTD_human |
| CTNNB1 | C0205641 | Adenocarcinoma, Basal Cell | 3 | CTD_human |
| CTNNB1 | C0205642 | Adenocarcinoma, Oxyphilic | 3 | CTD_human |
| CTNNB1 | C0205643 | Carcinoma, Cribriform | 3 | CTD_human |
| CTNNB1 | C0205644 | Carcinoma, Granular Cell | 3 | CTD_human |
| CTNNB1 | C0205645 | Adenocarcinoma, Tubular | 3 | CTD_human |
| CTNNB1 | C0206711 | Pilomatrixoma | 3 | CTD_human;ORPHANET;UNIPROT |
| CTNNB1 | C1879526 | Aberrant Crypt Foci | 3 | CTD_human |
| CTNNB1 | C0001430 | Adenoma | 2 | CTD_human |
| CTNNB1 | C0006142 | Malignant neoplasm of breast | 2 | CTD_human |
| CTNNB1 | C0023903 | Liver neoplasms | 2 | CTD_human |
| CTNNB1 | C0025149 | Medulloblastoma | 2 | CGI;CTD_human;UNIPROT |
| CTNNB1 | C0027626 | Neoplasm Invasiveness | 2 | CTD_human |
| CTNNB1 | C0027708 | Nephroblastoma | 2 | CTD_human |
| CTNNB1 | C0033578 | Prostatic Neoplasms | 2 | CTD_human |
| CTNNB1 | C0036341 | Schizophrenia | 2 | PSYGENET |
| CTNNB1 | C0205646 | Adenoma, Basal Cell | 2 | CTD_human |
| CTNNB1 | C0205647 | Follicular adenoma | 2 | CTD_human |
| CTNNB1 | C0205648 | Adenoma, Microcystic | 2 | CTD_human |
| CTNNB1 | C0205649 | Adenoma, Monomorphic | 2 | CTD_human |
| CTNNB1 | C0205650 | Papillary adenoma | 2 | CTD_human |
| CTNNB1 | C0205651 | Adenoma, Trabecular | 2 | CTD_human |
| CTNNB1 | C0235874 | Disease Exacerbation | 2 | CTD_human |
| CTNNB1 | C0345904 | Malignant neoplasm of liver | 2 | CTD_human |
| CTNNB1 | C0376358 | Malignant neoplasm of prostate | 2 | CTD_human |
| CTNNB1 | C0678222 | Breast Carcinoma | 2 | CTD_human |
| CTNNB1 | C1140680 | Malignant neoplasm of ovary | 2 | CGI;CTD_human;UNIPROT |
| CTNNB1 | C1257931 | Mammary Neoplasms, Human | 2 | CTD_human |
| CTNNB1 | C1458155 | Mammary Neoplasms | 2 | CTD_human |
| CTNNB1 | C2930471 | Bilateral Wilms Tumor | 2 | CTD_human |
| CTNNB1 | C4539767 | EXUDATIVE VITREORETINOPATHY 7 | 2 | GENOMICS_ENGLAND;UNIPROT |
| CTNNB1 | C4704874 | Mammary Carcinoma, Human | 2 | CTD_human |
| CTNNB1 | C0000772 | Multiple congenital anomalies | 1 | CTD_human |
| CTNNB1 | C0001624 | Adrenal Gland Neoplasms | 1 | CTD_human |
| CTNNB1 | C0007193 | Cardiomyopathy, Dilated | 1 | CTD_human |
| CTNNB1 | C0007528 | Cecal Neoplasms | 1 | CTD_human |
| CTNNB1 | C0007621 | Neoplastic Cell Transformation | 1 | CTD_human |
| CTNNB1 | C0007873 | Uterine Cervical Neoplasm | 1 | CTD_human |
| CTNNB1 | C0010276 | Craniopharyngioma | 1 | CTD_human;ORPHANET |
| CTNNB1 | C0014518 | Toxic Epidermal Necrolysis | 1 | CTD_human |
| CTNNB1 | C0016059 | Fibrosis | 1 | CTD_human |
| CTNNB1 | C0018923 | Hemangiosarcoma | 1 | CTD_human |
| CTNNB1 | C0019193 | Hepatitis, Toxic | 1 | CTD_human |
| CTNNB1 | C0021841 | Intestinal Neoplasms | 1 | CTD_human |
| CTNNB1 | C0023890 | Liver Cirrhosis | 1 | CTD_human |
| CTNNB1 | C0024121 | Lung Neoplasms | 1 | CTD_human |
| CTNNB1 | C0026846 | Muscular Atrophy | 1 | CTD_human |
| CTNNB1 | C0027627 | Neoplasm Metastasis | 1 | CTD_human |
| CTNNB1 | C0027746 | Nerve Degeneration | 1 | CTD_human |
| CTNNB1 | C0030297 | Pancreatic Neoplasm | 1 | CTD_human |
| CTNNB1 | C0031149 | Peritoneal Neoplasms | 1 | CTD_human |
| CTNNB1 | C0038325 | Stevens-Johnson Syndrome | 1 | CTD_human |
| CTNNB1 | C0149721 | Left Ventricular Hypertrophy | 1 | CTD_human |
| CTNNB1 | C0151744 | Myocardial Ischemia | 1 | CTD_human |
| CTNNB1 | C0153437 | Malignant neoplasm of cecum | 1 | CTD_human |
| CTNNB1 | C0206624 | Hepatoblastoma | 1 | CGI;CTD_human |
| CTNNB1 | C0206669 | Hepatocellular Adenoma | 1 | CTD_human |
| CTNNB1 | C0206686 | Adrenocortical carcinoma | 1 | CTD_human |
| CTNNB1 | C0232347 | No-Reflow Phenomenon | 1 | CTD_human |
| CTNNB1 | C0239946 | Fibrosis, Liver | 1 | CTD_human |
| CTNNB1 | C0242379 | Malignant neoplasm of lung | 1 | CTD_human |
| CTNNB1 | C0242698 | Ventricular Dysfunction, Left | 1 | CTD_human |
| CTNNB1 | C0270948 | Neurogenic Muscular Atrophy | 1 | CTD_human |
| CTNNB1 | C0278875 | Adult Craniopharyngioma | 1 | CTD_human |
| CTNNB1 | C0279606 | Childhood Hepatocellular Carcinoma | 1 | ORPHANET |
| CTNNB1 | C0279607 | Adult Hepatocellular Carcinoma | 1 | ORPHANET |
| CTNNB1 | C0334634 | Malignant lymphoma, lymphocytic, intermediate differentiation, diffuse | 1 | CTD_human |
| CTNNB1 | C0339539 | Familial Exudative Vitreoretinopathy | 1 | ORPHANET |
| CTNNB1 | C0342649 | Vascular calcification | 1 | CTD_human |
| CTNNB1 | C0345967 | Malignant mesothelioma | 1 | CTD_human |
| CTNNB1 | C0346627 | Intestinal Cancer | 1 | CTD_human |
| CTNNB1 | C0346647 | Malignant neoplasm of pancreas | 1 | CTD_human |
| CTNNB1 | C0346990 | Carcinomatosis of peritoneal cavity | 1 | CTD_human |
| CTNNB1 | C0376634 | Craniofacial Abnormalities | 1 | CTD_human |
| CTNNB1 | C0431128 | Papillary craniopharyngioma | 1 | CTD_human |
| CTNNB1 | C0431129 | Adamantinous Craniopharyngioma | 1 | CTD_human |
| CTNNB1 | C0431350 | Primary microcephaly | 1 | GENOMICS_ENGLAND |
| CTNNB1 | C0600519 | Ventricular Remodeling | 1 | CTD_human |
| CTNNB1 | C0600520 | Left Ventricle Remodeling | 1 | CTD_human |
| CTNNB1 | C0750887 | Adrenal Cancer | 1 | CTD_human |
| CTNNB1 | C0751061 | Craniopharyngioma, Child | 1 | CTD_human |
| CTNNB1 | C0751958 | Lymphoma, Lymphocytic, Intermediate | 1 | CTD_human |
| CTNNB1 | C0860207 | Drug-Induced Liver Disease | 1 | CTD_human |
| CTNNB1 | C0919267 | ovarian neoplasm | 1 | CGI;CTD_human |
| CTNNB1 | C1262760 | Hepatitis, Drug-Induced | 1 | CTD_human |
| CTNNB1 | C1274933 | Drug-Induced Stevens Johnson Syndrome | 1 | CTD_human |
| CTNNB1 | C1449563 | Cardiomyopathy, Familial Idiopathic | 1 | CTD_human |
| CTNNB1 | C1535926 | Neurodevelopmental Disorders | 1 | CTD_human |
| CTNNB1 | C1623038 | Cirrhosis | 1 | CTD_human |
| CTNNB1 | C1851402 | Exudative vitreoretinopathy 1 | 1 | ORPHANET |
| CTNNB1 | C2713615 | Slow-Flow Phenomenon | 1 | CTD_human |
| CTNNB1 | C3658290 | Drug-Induced Acute Liver Injury | 1 | CTD_human |
| CTNNB1 | C3658301 | Mycoplasma-Induced Stevens-Johnson Syndrome | 1 | CTD_human |
| CTNNB1 | C3658302 | Stevens-Johnson Syndrome Toxic Epidermal Necrolysis Spectrum | 1 | CTD_human |
| CTNNB1 | C4048328 | cervical cancer | 1 | CTD_human |
| CTNNB1 | C4277682 | Chemical and Drug Induced Liver Injury | 1 | CTD_human |
| CTNNB1 | C4279912 | Chemically-Induced Liver Toxicity | 1 | CTD_human |
