Home

Download

Statistics

Examples

Help

Contact

Editing gene: ZNF558 (CAeditome ID:148156)

Gene summary for ZNF558

Gene summary

Gene information	Gene symbol	ZNF558
	Gene ID	148156
	Gene name	zinc finger protein 558
	Synonyms	-
	Cytomap	19p13.2
	Type of gene	protein-coding
	Description	zinc finger protein 558
	Modification date	20210518
	UniProtAcc	Q96NG5
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

RNA A-to-I events for ZNF558

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000167785.7

RNA A-to-I editing events in Cancer.

CAediting_1287728(8806454, -), CAediting_1287729(8806455, -), CAediting_1287730(8806551, -), CAediting_1287731(8806616, -), CAediting_1287732(8806684, -), CAediting_1287733(8808196, -), CAediting_1287734(8808232, -), CAediting_1287735(8808261, -), CAediting_1287736(8808275, -), CAediting_1287737(8808320, -), CAediting_1287738(8808324, -), CAediting_1287739(8808328, -), CAediting_1287740(8808767, -), CAediting_1287741(8808810, -), CAediting_1287742(8808818, -), CAediting_1287743(8808837, -), CAediting_1287744(8808852, -), CAediting_1287745(8808865, -), CAediting_1287746(8808876, -), CAediting_1287747(8808877, -), CAediting_1287748(8808893, -), CAediting_1287749(8808899, -), CAediting_1287750(8808900, -), CAediting_1287751(8808908, -), CAediting_1287752(8808918, -), CAediting_1287753(8808944, -), CAediting_1287754(8808949, -), CAediting_1287755(8808959, -), CAediting_1287756(8809007, -), CAediting_1287757(8809051, -), CAediting_1287758(8811389, -), CAediting_1287759(8818209, -), CAediting_1287760(8818210, -), CAediting_1287761(8818249, -), CAediting_1287762(8818286, -), CAediting_1287763(8818289, -), CAediting_1287764(8818369, -), CAediting_1287765(8818370, -), CAediting_1287766(8818405, -), CAediting_1287767(8818437, -), CAediting_1287768(8818445, -), CAediting_1287769(8818767, -), CAediting_1287770(8818773, -), CAediting_1287771(8818785, -), CAediting_1287772(8818825, -), CAediting_1287773(8819400, -), CAediting_1287774(8819938, -), CAediting_1287775(8819940, -), CAediting_1287776(8820749, -), CAediting_1287777(8820755, -), CAediting_1287778(8827641, -), CAediting_1287779(8827643, -), CAediting_1287780(8827646, -), CAediting_1287781(8827650, -), CAediting_1287782(8827670, -), CAediting_1287783(8827679, -), CAediting_1287784(8827682, -), CAediting_1287785(8827684, -), CAediting_1287786(8827689, -), CAediting_1287787(8827706, -), CAediting_1287788(8827712, -), CAediting_1287789(8827718, -), CAediting_1287790(8827738, -), CAediting_1287791(8827747, -), CAediting_1287792(8827752, -), CAediting_1287793(8827753, -), CAediting_1287794(8827777, -), CAediting_1287795(8827778, -), CAediting_1287796(8827792, -), CAediting_1287797(8827793, -), CAediting_1287798(8827824, -), CAediting_1287799(8827825, -), CAediting_1287800(8827828, -), CAediting_1287801(8827833, -), CAediting_1287802(8827853, -), CAediting_1287803(8828728, -), CAediting_1287804(8828774, -), CAediting_1287805(8828847, -), CAediting_1287806(8828919, -), CAediting_1287807(8829140, -), CAediting_1287808(8830720, -), CAediting_1287809(8830726, -), CAediting_1287810(8830773, -), CAediting_1287811(8830808, -), CAediting_1287812(8830812, -), CAediting_1287813(8830813, -),

Top

RNA editing positional annotations for ZNF558 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1287728	chr19_8806454_-	UTR3
CAediting_1287729	chr19_8806455_-	UTR3
CAediting_1287730	chr19_8806551_-	UTR3
CAediting_1287731	chr19_8806616_-	UTR3
CAediting_1287732	chr19_8806684_-	UTR3
CAediting_1287733	chr19_8808196_-	UTR3
CAediting_1287734	chr19_8808232_-	UTR3
CAediting_1287735	chr19_8808261_-	UTR3
CAediting_1287736	chr19_8808275_-	UTR3
CAediting_1287737	chr19_8808320_-	UTR3
CAediting_1287738	chr19_8808324_-	UTR3
CAediting_1287739	chr19_8808328_-	UTR3
CAediting_1287740	chr19_8808767_-	UTR3
CAediting_1287741	chr19_8808810_-	UTR3
CAediting_1287742	chr19_8808818_-	UTR3
CAediting_1287743	chr19_8808837_-	UTR3
CAediting_1287744	chr19_8808852_-	UTR3
CAediting_1287745	chr19_8808865_-	UTR3
CAediting_1287746	chr19_8808876_-	UTR3
CAediting_1287747	chr19_8808877_-	UTR3
CAediting_1287748	chr19_8808893_-	UTR3
CAediting_1287749	chr19_8808899_-	UTR3
CAediting_1287750	chr19_8808900_-	UTR3
CAediting_1287751	chr19_8808908_-	UTR3
CAediting_1287752	chr19_8808918_-	UTR3
CAediting_1287753	chr19_8808944_-	UTR3
CAediting_1287754	chr19_8808949_-	UTR3
CAediting_1287755	chr19_8808959_-	UTR3
CAediting_1287756	chr19_8809007_-	UTR3
CAediting_1287757	chr19_8809051_-	UTR3
CAediting_1287758	chr19_8811389_-	exonic
CAediting_1287759	chr19_8818209_-	ncRNA_intronic
CAediting_1287760	chr19_8818210_-	ncRNA_intronic
CAediting_1287761	chr19_8818249_-	ncRNA_intronic
CAediting_1287762	chr19_8818286_-	ncRNA_intronic
CAediting_1287763	chr19_8818289_-	ncRNA_intronic
CAediting_1287764	chr19_8818369_-	ncRNA_intronic
CAediting_1287765	chr19_8818370_-	ncRNA_intronic
CAediting_1287766	chr19_8818405_-	ncRNA_intronic
CAediting_1287767	chr19_8818437_-	ncRNA_intronic
CAediting_1287768	chr19_8818445_-	ncRNA_intronic
CAediting_1287769	chr19_8818767_-	ncRNA_intronic
CAediting_1287770	chr19_8818773_-	ncRNA_intronic
CAediting_1287771	chr19_8818785_-	ncRNA_intronic
CAediting_1287772	chr19_8818825_-	ncRNA_intronic
CAediting_1287773	chr19_8819400_-	ncRNA_intronic
CAediting_1287774	chr19_8819938_-	ncRNA_intronic
CAediting_1287775	chr19_8819940_-	ncRNA_intronic
CAediting_1287776	chr19_8820749_-	ncRNA_intronic
CAediting_1287777	chr19_8820755_-	ncRNA_intronic
CAediting_1287778	chr19_8827641_-	ncRNA_intronic
CAediting_1287779	chr19_8827643_-	ncRNA_intronic
CAediting_1287780	chr19_8827646_-	ncRNA_intronic
CAediting_1287781	chr19_8827650_-	ncRNA_intronic
CAediting_1287782	chr19_8827670_-	ncRNA_intronic
CAediting_1287783	chr19_8827679_-	ncRNA_intronic
CAediting_1287784	chr19_8827682_-	ncRNA_intronic
CAediting_1287785	chr19_8827684_-	ncRNA_intronic
CAediting_1287786	chr19_8827689_-	ncRNA_intronic
CAediting_1287787	chr19_8827706_-	ncRNA_intronic
CAediting_1287788	chr19_8827712_-	ncRNA_intronic
CAediting_1287789	chr19_8827718_-	ncRNA_intronic
CAediting_1287790	chr19_8827738_-	ncRNA_intronic
CAediting_1287791	chr19_8827747_-	ncRNA_intronic
CAediting_1287792	chr19_8827752_-	ncRNA_intronic
CAediting_1287793	chr19_8827753_-	ncRNA_intronic
CAediting_1287794	chr19_8827777_-	ncRNA_intronic
CAediting_1287795	chr19_8827778_-	ncRNA_intronic
CAediting_1287796	chr19_8827792_-	ncRNA_intronic
CAediting_1287797	chr19_8827793_-	ncRNA_intronic
CAediting_1287798	chr19_8827824_-	ncRNA_intronic
CAediting_1287799	chr19_8827825_-	ncRNA_intronic
CAediting_1287800	chr19_8827828_-	ncRNA_intronic
CAediting_1287801	chr19_8827833_-	ncRNA_intronic
CAediting_1287802	chr19_8827853_-	ncRNA_intronic
CAediting_1287803	chr19_8828728_-	ncRNA_intronic
CAediting_1287804	chr19_8828774_-	ncRNA_intronic
CAediting_1287805	chr19_8828847_-	ncRNA_intronic
CAediting_1287806	chr19_8828919_-	ncRNA_intronic
CAediting_1287807	chr19_8829140_-	ncRNA_intronic
CAediting_1287808	chr19_8830720_-	ncRNA_intronic
CAediting_1287809	chr19_8830726_-	ncRNA_intronic
CAediting_1287810	chr19_8830773_-	ncRNA_exonic
CAediting_1287811	chr19_8830808_-	ncRNA_exonic
CAediting_1287812	chr19_8830812_-	ncRNA_exonic
CAediting_1287813	chr19_8830813_-	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1287728	chr19_8806454_-	SINE	Alu	AluSc
CAediting_1287729	chr19_8806455_-	SINE	Alu	AluSc
CAediting_1287730	chr19_8806551_-	SINE	Alu	AluSc
CAediting_1287731	chr19_8806616_-	SINE	Alu	AluSc
CAediting_1287732	chr19_8806684_-	SINE	Alu	AluSc
CAediting_1287733	chr19_8808196_-	SINE	Alu	AluSq2
CAediting_1287734	chr19_8808232_-	SINE	Alu	AluSq2
CAediting_1287735	chr19_8808261_-	SINE	Alu	AluSq2
CAediting_1287736	chr19_8808275_-	SINE	Alu	AluSq2
CAediting_1287737	chr19_8808320_-	SINE	Alu	AluSq2
CAediting_1287738	chr19_8808324_-	SINE	Alu	AluSq2
CAediting_1287739	chr19_8808328_-	SINE	Alu	AluSq2
CAediting_1287740	chr19_8808767_-	SINE	Alu	AluSc
CAediting_1287741	chr19_8808810_-	SINE	Alu	AluSc
CAediting_1287742	chr19_8808818_-	SINE	Alu	AluSc
CAediting_1287743	chr19_8808837_-	SINE	Alu	AluSc
CAediting_1287744	chr19_8808852_-	SINE	Alu	AluSc
CAediting_1287745	chr19_8808865_-	SINE	Alu	AluSc
CAediting_1287746	chr19_8808876_-	SINE	Alu	AluSc
CAediting_1287747	chr19_8808877_-	SINE	Alu	AluSc
CAediting_1287748	chr19_8808893_-	SINE	Alu	AluSc
CAediting_1287749	chr19_8808899_-	SINE	Alu	AluSc
CAediting_1287750	chr19_8808900_-	SINE	Alu	AluSc
CAediting_1287751	chr19_8808908_-	SINE	Alu	AluSc
CAediting_1287752	chr19_8808918_-	SINE	Alu	AluSc
CAediting_1287753	chr19_8808944_-	SINE	Alu	AluSc
CAediting_1287754	chr19_8808949_-	SINE	Alu	AluSc
CAediting_1287755	chr19_8808959_-	SINE	Alu	AluSc
CAediting_1287756	chr19_8809007_-	SINE	Alu	AluSc
CAediting_1287757	chr19_8809051_-	SINE	Alu	AluSc
CAediting_1287759	chr19_8818209_-	SINE	Alu	AluSc
CAediting_1287760	chr19_8818210_-	SINE	Alu	AluSc
CAediting_1287761	chr19_8818249_-	SINE	Alu	AluSc
CAediting_1287762	chr19_8818286_-	SINE	Alu	AluSc
CAediting_1287763	chr19_8818289_-	SINE	Alu	AluSc
CAediting_1287764	chr19_8818369_-	SINE	Alu	AluSc
CAediting_1287765	chr19_8818370_-	SINE	Alu	AluSc
CAediting_1287766	chr19_8818405_-	SINE	Alu	AluSc
CAediting_1287767	chr19_8818437_-	SINE	Alu	AluSc
CAediting_1287768	chr19_8818445_-	SINE	Alu	AluSc
CAediting_1287769	chr19_8818767_-	SINE	Alu	AluSz
CAediting_1287770	chr19_8818773_-	SINE	Alu	AluSz
CAediting_1287771	chr19_8818785_-	SINE	Alu	AluSz
CAediting_1287772	chr19_8818825_-	SINE	Alu	AluSz
CAediting_1287773	chr19_8819400_-	SINE	Alu	AluSx1
CAediting_1287774	chr19_8819938_-	SINE	Alu	AluSz6
CAediting_1287775	chr19_8819940_-	SINE	Alu	AluSz6
CAediting_1287776	chr19_8820749_-	SINE	Alu	AluSg
CAediting_1287777	chr19_8820755_-	SINE	Alu	AluSg
CAediting_1287778	chr19_8827641_-	SINE	Alu	AluSx
CAediting_1287779	chr19_8827643_-	SINE	Alu	AluSx
CAediting_1287780	chr19_8827646_-	SINE	Alu	AluSx
CAediting_1287781	chr19_8827650_-	SINE	Alu	AluSx
CAediting_1287782	chr19_8827670_-	SINE	Alu	AluSx
CAediting_1287783	chr19_8827679_-	SINE	Alu	AluSx
CAediting_1287784	chr19_8827682_-	SINE	Alu	AluSx
CAediting_1287785	chr19_8827684_-	SINE	Alu	AluSx
CAediting_1287786	chr19_8827689_-	SINE	Alu	AluSx
CAediting_1287787	chr19_8827706_-	SINE	Alu	AluSx
CAediting_1287788	chr19_8827712_-	SINE	Alu	AluSx
CAediting_1287789	chr19_8827718_-	SINE	Alu	AluSx
CAediting_1287790	chr19_8827738_-	SINE	Alu	AluSx
CAediting_1287791	chr19_8827747_-	SINE	Alu	AluSx
CAediting_1287792	chr19_8827752_-	SINE	Alu	AluSx
CAediting_1287793	chr19_8827753_-	SINE	Alu	AluSx
CAediting_1287794	chr19_8827777_-	SINE	Alu	AluSx
CAediting_1287795	chr19_8827778_-	SINE	Alu	AluSx
CAediting_1287796	chr19_8827792_-	SINE	Alu	AluSx
CAediting_1287797	chr19_8827793_-	SINE	Alu	AluSx
CAediting_1287798	chr19_8827824_-	SINE	Alu	AluSx
CAediting_1287799	chr19_8827825_-	SINE	Alu	AluSx
CAediting_1287800	chr19_8827828_-	SINE	Alu	AluSx
CAediting_1287801	chr19_8827833_-	SINE	Alu	AluSx
CAediting_1287802	chr19_8827853_-	SINE	Alu	AluSx
CAediting_1287803	chr19_8828728_-	SINE	Alu	AluSx
CAediting_1287804	chr19_8828774_-	SINE	Alu	AluSx
CAediting_1287805	chr19_8828847_-	SINE	Alu	AluSx
CAediting_1287806	chr19_8828919_-	SINE	Alu	AluSx
CAediting_1287807	chr19_8829140_-	SINE	Alu	AluSg7
CAediting_1287808	chr19_8830720_-	SINE	Alu	AluSz
CAediting_1287809	chr19_8830726_-	SINE	Alu	AluSz
CAediting_1287810	chr19_8830773_-	SINE	Alu	AluSz
CAediting_1287811	chr19_8830808_-	SINE	Alu	AluSz
CAediting_1287812	chr19_8830812_-	SINE	Alu	AluSz
CAediting_1287813	chr19_8830813_-	SINE	Alu	AluSz

Top

RNA A-to-I editing events in the alternative splicing sites for ZNF558

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000167785.7.ZNF558.

Correlation between RNA A-to-I editing and PSI for ENSG00000167785.7.ZNF558.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF558

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for ZNF558

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for ZNF558

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1287728	chr19_8806454_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3189-3p	8806453	8806459	7mer-m8	8806452	8806474	149.00	-25.76
CAediting_1287728	chr19_8806454_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6813-3p	8806452	8806458	7mer-m8	8806451	8806471	140.00	-11.55
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3192-5p	8806454	8806461	8mer-1a	8806454	8806473	156.00	-28.56
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-326	8806453	8806459	7mer-m8	8806452	8806471	140.00	-13.56
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-330-5p	8806453	8806459	7mer-m8	8806452	8806473	140.00	-18.73
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4314	8806454	8806460	7mer-m8	8806453	8806470	146.00	-21.18
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-514a-5p	8806452	8806458	7mer-m8	8806451	8806474	154.00	-20.73
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-514a-5p	8806452	8806458	7mer-m8	8806451	8806474	154.00	-20.73
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-514a-5p	8806452	8806458	7mer-m8	8806451	8806474	154.00	-20.73
CAediting_1287731	chr19_8806616_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3622a-3p	8806612	8806619	8mer-1a	8806612	8806633	148.00	-20.48
CAediting_1287731	chr19_8806616_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3622b-3p	8806612	8806619	8mer-1a	8806612	8806632	153.00	-21.95
CAediting_1287733	chr19_8808196_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4691-3p	8808192	8808198	7mer-m8	8808191	8808218	150.00	-26.36
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1247-3p	8808230	8808236	7mer-m8	8808229	8808251	156.00	-28.60
CAediting_1287736	chr19_8808275_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4286	8808274	8808279	6mer	8808273	8808289	142.00	-21.16
CAediting_1287737	chr19_8808320_-	ENSG00000167785.7	ENST00000601372	hsa-miR-7-1-3p	8808318	8808324	7mer-m8	8808317	8808338	142.00	-3.70
CAediting_1287737	chr19_8808320_-	ENSG00000167785.7	ENST00000601372	hsa-miR-7-2-3p	8808318	8808324	7mer-m8	8808317	8808338	140.00	-3.33
CAediting_1287738	chr19_8808324_-	ENSG00000167785.7	ENST00000601372	hsa-miR-7-1-3p	8808322	8808328	7mer-m8	8808321	8808343	159.00	-10.41
CAediting_1287738	chr19_8808324_-	ENSG00000167785.7	ENST00000601372	hsa-miR-7-2-3p	8808322	8808328	7mer-m8	8808321	8808343	146.00	-5.96
CAediting_1287739	chr19_8808328_-	ENSG00000167785.7	ENST00000601372	hsa-miR-7-1-3p	8808326	8808332	7mer-m8	8808325	8808343	142.00	-9.13
CAediting_1287739	chr19_8808328_-	ENSG00000167785.7	ENST00000601372	hsa-miR-7-2-3p	8808326	8808332	7mer-m8	8808325	8808346	141.00	-4.77
CAediting_1287740	chr19_8808767_-	ENSG00000167785.7	ENST00000601372	hsa-miR-23a-5p	8808762	8808768	7mer-m8	8808761	8808782	145.00	-19.43
CAediting_1287740	chr19_8808767_-	ENSG00000167785.7	ENST00000601372	hsa-miR-23b-5p	8808762	8808768	7mer-m8	8808761	8808782	145.00	-14.20
CAediting_1287747	chr19_8808877_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4645-5p	8808876	8808883	8mer-1a	8808876	8808894	145.00	-18.31
CAediting_1287747	chr19_8808877_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4673	8808876	8808883	8mer-1a	8808876	8808898	142.00	-21.46
CAediting_1287747	chr19_8808877_-	ENSG00000167785.7	ENST00000601372	hsa-miR-9900	8808872	8808878	7mer-m8	8808871	8808890	143.00	-14.91
CAediting_1287748	chr19_8808893_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6747-3p	8808888	8808895	8mer-1a	8808888	8808908	144.00	-19.47
CAediting_1287749	chr19_8808899_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6787-3p	8808893	8808900	8mer-1a	8808893	8808914	143.00	-19.28
CAediting_1287752	chr19_8808918_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6768-5p	8808917	8808923	7mer-m8	8808916	8808938	140.00	-17.52
CAediting_1287754	chr19_8808949_-	ENSG00000167785.7	ENST00000601372	hsa-miR-500a-5p	8808944	8808951	8mer-1a	8808944	8808965	149.00	-14.78
CAediting_1287755	chr19_8808959_-	ENSG00000167785.7	ENST00000601372	hsa-miR-222-5p	8808957	8808964	8mer-1a	8808957	8808975	144.00	-11.65
CAediting_1287755	chr19_8808959_-	ENSG00000167785.7	ENST00000601372	hsa-miR-30a-3p	8808956	8808962	7mer-m8	8808955	8808979	154.00	-15.39
CAediting_1287755	chr19_8808959_-	ENSG00000167785.7	ENST00000601372	hsa-miR-30d-3p	8808956	8808962	7mer-m8	8808955	8808980	151.00	-15.51
CAediting_1287755	chr19_8808959_-	ENSG00000167785.7	ENST00000601372	hsa-miR-30e-3p	8808956	8808962	7mer-m8	8808955	8808979	154.00	-17.25
CAediting_1287755	chr19_8808959_-	ENSG00000167785.7	ENST00000601372	hsa-miR-936	8808958	8808965	8mer-1a	8808958	8808980	159.00	-24.07
CAediting_1287757	chr19_8809051_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4509	8809051	8809057	7mer-m8	8809050	8809071	140.00	-13.34
CAediting_1287757	chr19_8809051_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4509	8809051	8809057	7mer-m8	8809050	8809071	140.00	-13.34
CAediting_1287757	chr19_8809051_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4509	8809051	8809057	7mer-m8	8809050	8809071	140.00	-13.34
CAediting_1287757	chr19_8809051_-	ENSG00000167785.7	ENST00000601372	hsa-miR-8052	8809046	8809052	7mer-1a	8809046	8809064	140.00	-24.75
CAediting_1287730	chr19_8806551_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1207-3p	8806550	8806557	8mer-1a	8806550	8806567	144.00	-14.68
CAediting_1287730	chr19_8806551_-	ENSG00000167785.7	ENST00000601372	hsa-miR-34a-3p	8806548	8806554	7mer-m8	8806547	8806568	140.00	-8.12
CAediting_1287742	chr19_8808818_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6071	8808814	8808820	7mer-m8	8808813	8808831	158.00	-26.14
CAediting_1287742	chr19_8808818_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6728-3p	8808813	8808819	7mer-m8	8808812	8808833	142.00	-19.11
CAediting_1287744	chr19_8808852_-	ENSG00000167785.7	ENST00000601372	hsa-miR-324-3p	8808852	8808858	7mer-m8	8808851	8808873	145.00	-22.39
CAediting_1287745	chr19_8808865_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1306-5p	8808865	8808871	7mer-m8	8808864	8808885	145.00	-23.00
CAediting_1287746	chr19_8808876_-	ENSG00000167785.7	ENST00000601372	hsa-miR-24-3p	8808874	8808880	7mer-m8	8808873	8808894	140.00	-15.10
CAediting_1287746	chr19_8808876_-	ENSG00000167785.7	ENST00000601372	hsa-miR-24-3p	8808874	8808880	7mer-m8	8808873	8808894	140.00	-15.10
CAediting_1287746	chr19_8808876_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3155a	8808872	8808878	7mer-m8	8808871	8808892	149.00	-23.41
CAediting_1287746	chr19_8808876_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3155b	8808872	8808878	7mer-m8	8808871	8808889	149.00	-22.38
CAediting_1287746	chr19_8808876_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3934-3p	8808875	8808881	7mer-m8	8808874	8808895	147.00	-16.82
CAediting_1287746	chr19_8808876_-	ENSG00000167785.7	ENST00000601372	hsa-miR-484	8808872	8808878	7mer-m8	8808871	8808892	155.00	-24.89
CAediting_1287751	chr19_8808908_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1207-3p	8808908	8808914	7mer-m8	8808907	8808924	140.00	-12.56
CAediting_1287751	chr19_8808908_-	ENSG00000167785.7	ENST00000601372	hsa-miR-503-5p	8808906	8808911	6mer	8808905	8808930	140.00	-25.44
CAediting_1287751	chr19_8808908_-	ENSG00000167785.7	ENST00000601372	hsa-miR-646	8808906	8808912	7mer-m8	8808905	8808923	145.00	-14.99

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1287756	chr19_8809007_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1267	8809002	8809009	8mer-1a	8809002	8809023	153	-17.06
CAediting_1287731	chr19_8806616_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3614-5p	8806612	8806618	7mer-1a	8806612	8806635	144	-19.41
CAediting_1287742	chr19_8808818_-	ENSG00000167785.7	ENST00000601372	hsa-miR-367-5p	8808814	8808821	8mer-1a	8808814	8808835	149	-13.56
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3689a-3p	8808232	8808238	7mer-m8	8808231	8808254	143	-21.67
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3689b-3p	8808232	8808238	7mer-m8	8808231	8808251	150	-22.23
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-3689c	8808232	8808238	7mer-m8	8808231	8808251	150	-22.23
CAediting_1287744	chr19_8808852_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4284	8808848	8808855	8mer-1a	8808848	8808865	151	-16.7
CAediting_1287749	chr19_8808899_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4328	8808895	8808901	7mer-1a	8808895	8808911	143	-14.2
CAediting_1287750	chr19_8808900_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4328	8808895	8808901	7mer-1a	8808895	8808911	143	-14.2
CAediting_1287748	chr19_8808893_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4421	8808888	8808895	8mer-1a	8808888	8808909	140	-15.52
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-490-3p	8808228	8808234	7mer-m8	8808227	8808249	148	-18.12
CAediting_1287757	chr19_8809051_-	ENSG00000167785.7	ENST00000601372	hsa-miR-5089-5p	8809046	8809052	7mer-m8	8809045	8809065	140	-14.07
CAediting_1287732	chr19_8806684_-	ENSG00000167785.7	ENST00000601372	hsa-miR-5586-3p	8806680	8806686	7mer-m8	8806679	8806700	148	-14.57
CAediting_1287733	chr19_8808196_-	ENSG00000167785.7	ENST00000601372	hsa-miR-5690	8808192	8808198	7mer-m8	8808191	8808211	145	-17.72
CAediting_1287748	chr19_8808893_-	ENSG00000167785.7	ENST00000601372	hsa-miR-5699-3p	8808888	8808895	8mer-1a	8808888	8808909	147	-20.14
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6779-5p	8808232	8808238	7mer-m8	8808231	8808249	152	-23.26
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6780a-5p	8808232	8808238	7mer-m8	8808231	8808255	147	-23.56
CAediting_1287734	chr19_8808232_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6852-5p	8808230	8808235	6mer	8808229	8808249	140	-21.7
CAediting_1287742	chr19_8808818_-	ENSG00000167785.7	ENST00000601372	hsa-miR-744-3p	8808816	8808822	7mer-m8	8808815	8808836	145	-15.09
CAediting_1287732	chr19_8806684_-	ENSG00000167785.7	ENST00000601372	hsa-miR-759	8806679	8806685	7mer-m8	8806678	8806700	147	-13.06
CAediting_1287729	chr19_8806455_-	ENSG00000167785.7	ENST00000601372	hsa-miR-887-5p	8806454	8806461	8mer-1a	8806454	8806474	147	-13.82

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_980496	chr14_31014685_-	ENSG00000167785.7	ENST00000601372	hsa-miR-624-3p	8806228	8806235	8mer-1a	8806228	8806247	149	-12.13
CAediting_393	chr1_1167164_+	ENSG00000167785.7	ENST00000601372	hsa-miR-200b-3p	8810600	8810605	6mer	8810599	8810620	148	-11.62
CAediting_688081	chr9_63819627_+	ENSG00000167785.7	ENST00000601372	hsa-miR-4477b	8809733	8809740	8mer-1a	8809733	8809755	151	-14.27
CAediting_688081	chr9_63819627_+	ENSG00000167785.7	ENST00000601372	hsa-miR-4477b	8811230	8811236	7mer-m8	8811229	8811255	143	-12.31
CAediting_393	chr1_1167164_+	ENSG00000167785.7	ENST00000301475	hsa-miR-200b-3p	8810600	8810605	6mer	8810599	8810620	148	-11.62
CAediting_688081	chr9_63819627_+	ENSG00000167785.7	ENST00000301475	hsa-miR-4477b	8809733	8809740	8mer-1a	8809733	8809755	151	-14.27
CAediting_688081	chr9_63819627_+	ENSG00000167785.7	ENST00000301475	hsa-miR-4477b	8811230	8811236	7mer-m8	8811229	8811255	143	-12.31
CAediting_1054808	chr15_66496985_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4512	8808053	8808059	7mer-m8	8808052	8808072	152	-16.76
CAediting_1229415	chr17_67471547_+	ENSG00000167785.7	ENST00000601372	hsa-miR-548aa	8810815	8810821	7mer-m8	8810814	8810838	154	-15.77
CAediting_1351755	chr19_40282625_-	ENSG00000167785.7	ENST00000601372	hsa-miR-641	8809817	8809823	7mer-1a	8809817	8809839	143	-17.12
CAediting_1368054	chr19_46709310_-	ENSG00000167785.7	ENST00000601372	hsa-miR-320e	8810891	8810897	7mer-m8	8810890	8810909	155	-21.15
CAediting_117844	chr1_162342605_+	ENSG00000167785.7	ENST00000601372	hsa-miR-556-3p	8810872	8810879	8mer-1a	8810872	8810893	146	-10.44
CAediting_228905	chr2_188297554_+	ENSG00000167785.7	ENST00000601372	hsa-miR-561-3p	8808497	8808503	7mer-m8	8808496	8808518	154	-13.51
CAediting_396018	chr5_1062918_-	ENSG00000167785.7	ENST00000601372	hsa-miR-4635	8809236	8809242	7mer-m8	8809235	8809255	151	-21.31
CAediting_524911	chr7_5495852_-	ENSG00000167785.7	ENST00000601372	hsa-miR-589-3p	8809124	8809130	7mer-m8	8809123	8809146	159	-22.33
CAediting_573001	chr7_92204086_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1285-5p	8808995	8809000	6mer	8808994	8809014	146	-24.68
CAediting_1229415	chr17_67471547_+	ENSG00000167785.7	ENST00000301475	hsa-miR-548aa	8810815	8810821	7mer-m8	8810814	8810838	154	-15.77
CAediting_1351755	chr19_40282625_-	ENSG00000167785.7	ENST00000301475	hsa-miR-641	8809817	8809823	7mer-1a	8809817	8809839	143	-17.12
CAediting_1368054	chr19_46709310_-	ENSG00000167785.7	ENST00000301475	hsa-miR-320e	8810891	8810897	7mer-m8	8810890	8810909	155	-21.15
CAediting_117844	chr1_162342605_+	ENSG00000167785.7	ENST00000301475	hsa-miR-556-3p	8810872	8810879	8mer-1a	8810872	8810893	146	-10.44

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_442554	chr5_154685830_+	ENSG00000167785.7	ENST00000601372	hsa-miR-1303	8811125	8811131	7mer-m8	8811124	8811145	147	-8.23
CAediting_442554	chr5_154685830_+	ENSG00000167785.7	ENST00000601372	hsa-miR-1303	8808613	8808619	7mer-m8	8808612	8808633	148	-8.91
CAediting_846604	chr11_93733708_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1304-3p	8807629	8807635	7mer-m8	8807628	8807649	145	-17.05
CAediting_846604	chr11_93733708_-	ENSG00000167785.7	ENST00000601372	hsa-miR-1304-3p	8807441	8807447	7mer-m8	8807440	8807461	146	-11.83
CAediting_1160181	chr17_7017644_-	ENSG00000167785.7	ENST00000601372	hsa-miR-195-3p	8810165	8810171	7mer-m8	8810164	8810185	153	-16.34
CAediting_1160181	chr17_7017644_-	ENSG00000167785.7	ENST00000601372	hsa-miR-195-3p	8810001	8810007	7mer-m8	8810000	8810020	155	-16.88
CAediting_524911	chr7_5495852_-	ENSG00000167785.7	ENST00000601372	hsa-miR-589-3p	8808709	8808715	7mer-m8	8808708	8808731	140	-17.45
CAediting_1399425	chr20_1392958_-	ENSG00000167785.7	ENST00000601372	hsa-miR-6869-5p	8807350	8807356	7mer-m8	8807349	8807370	140	-12.13

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZNF558

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for ZNF558

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

Top

Relation with cancer stages for ZNF558

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for ZNF558

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for ZNF558

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for ZNF558

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene