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Editing gene: DPY19L3 (CAeditome ID:147991)

Gene summary for DPY19L3

Gene summary

Gene information	Gene symbol	DPY19L3
	Gene ID	147991
	Gene name	dpy-19 like C-mannosyltransferase 3
	Synonyms	-
	Cytomap	19q13.11
	Type of gene	protein-coding
	Description	probable C-mannosyltransferase DPY19L3dpy-19 like 3dpy-19-like 3dpy-19-like protein 3protein dpy-19 homolog 3
	Modification date	20210518
	UniProtAcc	Q6ZPD9
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for DPY19L3

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000178904.17

RNA A-to-I editing events in Cancer.

CAediting_1333048(32411645, +), CAediting_1333049(32411693, +), CAediting_1333050(32411694, +), CAediting_1333051(32411729, +), CAediting_1333052(32411770, +), CAediting_1333053(32411818, +), CAediting_1333054(32411828, +), CAediting_1333055(32411951, +), CAediting_1333056(32411956, +), CAediting_1333057(32411993, +), CAediting_1333058(32412007, +), CAediting_1333059(32412022, +), CAediting_1333060(32412042, +), CAediting_1333061(32412065, +), CAediting_1333062(32412680, +), CAediting_1333063(32412710, +), CAediting_1333064(32412728, +), CAediting_1333065(32412774, +), CAediting_1333066(32412801, +), CAediting_1333067(32412803, +), CAediting_1333068(32412809, +), CAediting_1333069(32412810, +), CAediting_1333070(32412819, +), CAediting_1333071(32412823, +), CAediting_1333072(32412845, +), CAediting_1333073(32412850, +), CAediting_1333074(32412851, +), CAediting_1333075(32412862, +), CAediting_1333076(32412871, +), CAediting_1333077(32412887, +), CAediting_1333078(32412909, +), CAediting_1333079(32412917, +), CAediting_1333080(32414473, +), CAediting_1333081(32414487, +), CAediting_1333082(32421438, +), CAediting_1333083(32421493, +), CAediting_1333084(32421585, +), CAediting_1333085(32423890, +), CAediting_1333086(32423892, +), CAediting_1333087(32423919, +), CAediting_1333088(32424082, +), CAediting_1333089(32424107, +), CAediting_1333090(32424115, +), CAediting_1333091(32424135, +), CAediting_1333092(32424186, +), CAediting_1333093(32424205, +), CAediting_1333094(32425415, +), CAediting_1333095(32425420, +), CAediting_1333096(32425424, +), CAediting_1333097(32425430, +), CAediting_1333098(32425460, +), CAediting_1333099(32425472, +), CAediting_1333100(32427068, +), CAediting_1333101(32427073, +), CAediting_1333102(32428041, +), CAediting_1333103(32428072, +), CAediting_1333104(32430322, +), CAediting_1333105(32431299, +), CAediting_1333106(32431305, +), CAediting_1333107(32443845, +), CAediting_1333108(32455194, +), CAediting_1333109(32456209, +), CAediting_1333110(32456669, +), CAediting_1333111(32456905, +), CAediting_1333112(32456959, +), CAediting_1333113(32460185, +), CAediting_1333114(32460186, +), CAediting_1333115(32460191, +), CAediting_1333116(32460200, +), CAediting_1333117(32460219, +), CAediting_1333118(32460264, +), CAediting_1333119(32460268, +), CAediting_1333120(32460283, +), CAediting_1333121(32460290, +), CAediting_1333122(32460336, +), CAediting_1333123(32469241, +), CAediting_1333124(32469336, +), CAediting_1333125(32469341, +), CAediting_1333126(32469343, +), CAediting_1333127(32469350, +), CAediting_1333128(32469354, +), CAediting_1333129(32469362, +), CAediting_1333130(32469406, +), CAediting_1333131(32469407, +), CAediting_1333132(32469408, +), CAediting_1333133(32469428, +), CAediting_1333134(32469459, +), CAediting_1333135(32482484, +),

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RNA editing positional annotations for DPY19L3 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1333048	chr19_32411645_+	ncRNA_intronic
CAediting_1333049	chr19_32411693_+	ncRNA_intronic
CAediting_1333050	chr19_32411694_+	ncRNA_intronic
CAediting_1333051	chr19_32411729_+	ncRNA_intronic
CAediting_1333052	chr19_32411770_+	ncRNA_intronic
CAediting_1333053	chr19_32411818_+	ncRNA_intronic
CAediting_1333054	chr19_32411828_+	ncRNA_intronic
CAediting_1333055	chr19_32411951_+	ncRNA_intronic
CAediting_1333056	chr19_32411956_+	ncRNA_intronic
CAediting_1333057	chr19_32411993_+	ncRNA_intronic
CAediting_1333058	chr19_32412007_+	ncRNA_intronic
CAediting_1333059	chr19_32412022_+	ncRNA_intronic
CAediting_1333060	chr19_32412042_+	ncRNA_intronic
CAediting_1333061	chr19_32412065_+	ncRNA_intronic
CAediting_1333062	chr19_32412680_+	ncRNA_intronic
CAediting_1333063	chr19_32412710_+	ncRNA_intronic
CAediting_1333064	chr19_32412728_+	ncRNA_intronic
CAediting_1333065	chr19_32412774_+	ncRNA_intronic
CAediting_1333066	chr19_32412801_+	ncRNA_intronic
CAediting_1333067	chr19_32412803_+	ncRNA_intronic
CAediting_1333068	chr19_32412809_+	ncRNA_intronic
CAediting_1333069	chr19_32412810_+	ncRNA_intronic
CAediting_1333070	chr19_32412819_+	ncRNA_intronic
CAediting_1333071	chr19_32412823_+	ncRNA_intronic
CAediting_1333072	chr19_32412845_+	ncRNA_intronic
CAediting_1333073	chr19_32412850_+	ncRNA_intronic
CAediting_1333074	chr19_32412851_+	ncRNA_intronic
CAediting_1333075	chr19_32412862_+	ncRNA_intronic
CAediting_1333076	chr19_32412871_+	ncRNA_intronic
CAediting_1333077	chr19_32412887_+	ncRNA_intronic
CAediting_1333078	chr19_32412909_+	ncRNA_intronic
CAediting_1333079	chr19_32412917_+	ncRNA_intronic
CAediting_1333080	chr19_32414473_+	ncRNA_intronic
CAediting_1333081	chr19_32414487_+	ncRNA_intronic
CAediting_1333082	chr19_32421438_+	ncRNA_intronic
CAediting_1333083	chr19_32421493_+	ncRNA_intronic
CAediting_1333084	chr19_32421585_+	ncRNA_intronic
CAediting_1333085	chr19_32423890_+	ncRNA_intronic
CAediting_1333086	chr19_32423892_+	ncRNA_intronic
CAediting_1333087	chr19_32423919_+	ncRNA_intronic
CAediting_1333088	chr19_32424082_+	ncRNA_intronic
CAediting_1333089	chr19_32424107_+	ncRNA_intronic
CAediting_1333090	chr19_32424115_+	ncRNA_intronic
CAediting_1333091	chr19_32424135_+	ncRNA_intronic
CAediting_1333092	chr19_32424186_+	ncRNA_intronic
CAediting_1333093	chr19_32424205_+	ncRNA_intronic
CAediting_1333094	chr19_32425415_+	ncRNA_intronic
CAediting_1333095	chr19_32425420_+	ncRNA_intronic
CAediting_1333096	chr19_32425424_+	ncRNA_intronic
CAediting_1333097	chr19_32425430_+	ncRNA_intronic
CAediting_1333098	chr19_32425460_+	ncRNA_intronic
CAediting_1333099	chr19_32425472_+	ncRNA_intronic
CAediting_1333100	chr19_32427068_+	ncRNA_intronic
CAediting_1333101	chr19_32427073_+	ncRNA_intronic
CAediting_1333102	chr19_32428041_+	ncRNA_exonic
CAediting_1333103	chr19_32428072_+	intronic
CAediting_1333104	chr19_32430322_+	intronic
CAediting_1333105	chr19_32431299_+	intronic
CAediting_1333106	chr19_32431305_+	intronic
CAediting_1333107	chr19_32443845_+	ncRNA_intronic
CAediting_1333108	chr19_32455194_+	ncRNA_intronic
CAediting_1333109	chr19_32456209_+	ncRNA_intronic
CAediting_1333110	chr19_32456669_+	ncRNA_intronic
CAediting_1333111	chr19_32456905_+	ncRNA_intronic
CAediting_1333112	chr19_32456959_+	ncRNA_intronic
CAediting_1333113	chr19_32460185_+	ncRNA_intronic
CAediting_1333114	chr19_32460186_+	ncRNA_intronic
CAediting_1333115	chr19_32460191_+	ncRNA_intronic
CAediting_1333116	chr19_32460200_+	ncRNA_intronic
CAediting_1333117	chr19_32460219_+	ncRNA_intronic
CAediting_1333118	chr19_32460264_+	ncRNA_intronic
CAediting_1333119	chr19_32460268_+	ncRNA_intronic
CAediting_1333120	chr19_32460283_+	ncRNA_intronic
CAediting_1333121	chr19_32460290_+	ncRNA_intronic
CAediting_1333122	chr19_32460336_+	ncRNA_intronic
CAediting_1333123	chr19_32469241_+	ncRNA_intronic
CAediting_1333124	chr19_32469336_+	ncRNA_intronic
CAediting_1333125	chr19_32469341_+	ncRNA_intronic
CAediting_1333126	chr19_32469343_+	ncRNA_intronic
CAediting_1333127	chr19_32469350_+	ncRNA_intronic
CAediting_1333128	chr19_32469354_+	ncRNA_intronic
CAediting_1333129	chr19_32469362_+	ncRNA_intronic
CAediting_1333130	chr19_32469406_+	ncRNA_intronic
CAediting_1333131	chr19_32469407_+	ncRNA_intronic
CAediting_1333132	chr19_32469408_+	ncRNA_intronic
CAediting_1333133	chr19_32469428_+	ncRNA_intronic
CAediting_1333134	chr19_32469459_+	ncRNA_intronic
CAediting_1333135	chr19_32482484_+	ncRNA_exonic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1333048	chr19_32411645_+	SINE	Alu	AluSx4
CAediting_1333049	chr19_32411693_+	SINE	Alu	AluSx4
CAediting_1333050	chr19_32411694_+	SINE	Alu	AluSx4
CAediting_1333051	chr19_32411729_+	SINE	Alu	AluSx4
CAediting_1333052	chr19_32411770_+	SINE	Alu	AluSx4
CAediting_1333053	chr19_32411818_+	SINE	Alu	AluSx4
CAediting_1333054	chr19_32411828_+	SINE	Alu	AluSx4
CAediting_1333055	chr19_32411951_+	SINE	Alu	AluJo
CAediting_1333056	chr19_32411956_+	SINE	Alu	AluJo
CAediting_1333057	chr19_32411993_+	SINE	Alu	AluJo
CAediting_1333058	chr19_32412007_+	SINE	Alu	AluJo
CAediting_1333059	chr19_32412022_+	SINE	Alu	AluJo
CAediting_1333060	chr19_32412042_+	SINE	Alu	AluJo
CAediting_1333061	chr19_32412065_+	SINE	Alu	AluJo
CAediting_1333062	chr19_32412680_+	SINE	Alu	AluSz
CAediting_1333063	chr19_32412710_+	SINE	Alu	AluSz
CAediting_1333064	chr19_32412728_+	SINE	Alu	AluSz
CAediting_1333065	chr19_32412774_+	SINE	Alu	AluSz
CAediting_1333066	chr19_32412801_+	SINE	Alu	AluSz
CAediting_1333067	chr19_32412803_+	SINE	Alu	AluSz
CAediting_1333068	chr19_32412809_+	SINE	Alu	AluSz
CAediting_1333069	chr19_32412810_+	SINE	Alu	AluSz
CAediting_1333070	chr19_32412819_+	SINE	Alu	AluSz
CAediting_1333071	chr19_32412823_+	SINE	Alu	AluSz
CAediting_1333072	chr19_32412845_+	SINE	Alu	AluSz
CAediting_1333073	chr19_32412850_+	SINE	Alu	AluSz
CAediting_1333074	chr19_32412851_+	SINE	Alu	AluSz
CAediting_1333075	chr19_32412862_+	SINE	Alu	AluSz
CAediting_1333076	chr19_32412871_+	SINE	Alu	AluSz
CAediting_1333077	chr19_32412887_+	SINE	Alu	AluSz
CAediting_1333078	chr19_32412909_+	SINE	Alu	AluSz
CAediting_1333079	chr19_32412917_+	SINE	Alu	AluSz
CAediting_1333080	chr19_32414473_+	SINE	Alu	AluSz
CAediting_1333081	chr19_32414487_+	SINE	Alu	AluSz
CAediting_1333082	chr19_32421438_+	SINE	Alu	AluSz6
CAediting_1333083	chr19_32421493_+	SINE	Alu	AluSz6
CAediting_1333084	chr19_32421585_+	SINE	Alu	AluSz6
CAediting_1333085	chr19_32423890_+	SINE	Alu	AluJo
CAediting_1333086	chr19_32423892_+	SINE	Alu	AluJo
CAediting_1333087	chr19_32423919_+	SINE	Alu	AluJo
CAediting_1333088	chr19_32424082_+	SINE	Alu	AluJb
CAediting_1333089	chr19_32424107_+	SINE	Alu	AluJb
CAediting_1333090	chr19_32424115_+	SINE	Alu	AluJb
CAediting_1333091	chr19_32424135_+	SINE	Alu	AluJb
CAediting_1333092	chr19_32424186_+	SINE	Alu	AluJb
CAediting_1333093	chr19_32424205_+	SINE	Alu	AluJb
CAediting_1333094	chr19_32425415_+	SINE	Alu	AluSz
CAediting_1333095	chr19_32425420_+	SINE	Alu	AluSz
CAediting_1333096	chr19_32425424_+	SINE	Alu	AluSz
CAediting_1333097	chr19_32425430_+	SINE	Alu	AluSz
CAediting_1333098	chr19_32425460_+	SINE	Alu	AluSz
CAediting_1333099	chr19_32425472_+	SINE	Alu	AluSz
CAediting_1333100	chr19_32427068_+	SINE	Alu	AluJb
CAediting_1333101	chr19_32427073_+	SINE	Alu	AluJb
CAediting_1333102	chr19_32428041_+	SINE	Alu	AluSx
CAediting_1333103	chr19_32428072_+	SINE	Alu	AluSx
CAediting_1333104	chr19_32430322_+	SINE	Alu	AluJb
CAediting_1333105	chr19_32431299_+	SINE	Alu	AluSp
CAediting_1333106	chr19_32431305_+	SINE	Alu	AluSp
CAediting_1333107	chr19_32443845_+	SINE	Alu	AluSz
CAediting_1333108	chr19_32455194_+	SINE	Alu	FLAM_A
CAediting_1333109	chr19_32456209_+	SINE	Alu	AluJo
CAediting_1333110	chr19_32456669_+	SINE	Alu	AluJr
CAediting_1333111	chr19_32456905_+	SINE	Alu	AluJr
CAediting_1333112	chr19_32456959_+	SINE	Alu	AluJr
CAediting_1333113	chr19_32460185_+	SINE	Alu	AluJr
CAediting_1333114	chr19_32460186_+	SINE	Alu	AluJr
CAediting_1333115	chr19_32460191_+	SINE	Alu	AluJr
CAediting_1333116	chr19_32460200_+	SINE	Alu	AluJr
CAediting_1333117	chr19_32460219_+	SINE	Alu	AluJr
CAediting_1333118	chr19_32460264_+	SINE	Alu	AluJr
CAediting_1333119	chr19_32460268_+	SINE	Alu	AluJr
CAediting_1333120	chr19_32460283_+	SINE	Alu	AluJr
CAediting_1333121	chr19_32460290_+	SINE	Alu	AluJr
CAediting_1333122	chr19_32460336_+	SINE	Alu	AluJr
CAediting_1333123	chr19_32469241_+	SINE	Alu	AluSx1
CAediting_1333124	chr19_32469336_+	SINE	Alu	AluSx1
CAediting_1333125	chr19_32469341_+	SINE	Alu	AluSx1
CAediting_1333126	chr19_32469343_+	SINE	Alu	AluSx1
CAediting_1333127	chr19_32469350_+	SINE	Alu	AluSx1
CAediting_1333128	chr19_32469354_+	SINE	Alu	AluSx1
CAediting_1333129	chr19_32469362_+	SINE	Alu	AluSx1
CAediting_1333130	chr19_32469406_+	SINE	Alu	AluSx1
CAediting_1333131	chr19_32469407_+	SINE	Alu	AluSx1
CAediting_1333132	chr19_32469408_+	SINE	Alu	AluSx1
CAediting_1333133	chr19_32469428_+	SINE	Alu	AluSx1
CAediting_1333134	chr19_32469459_+	SINE	Alu	AluSx1

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RNA A-to-I editing events in the alternative splicing sites for DPY19L3

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000178904.17.DPY19L3.

Correlation between RNA A-to-I editing and PSI for ENSG00000178904.17.DPY19L3.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for DPY19L3

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for DPY19L3

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for DPY19L3

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1333048	chr19_32411645_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6516-5p	32411641	32411647	7mer-m8	32411625	32411648	151.00	-16.01
CAediting_1333055	chr19_32411951_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4670-5p	32411946	32411952	7mer-m8	32411930	32411953	152.00	-17.65
CAediting_1333055	chr19_32411951_+	ENSG00000178904.17	ENST00000587077	hsa-miR-551a	32411944	32411950	7mer-m8	32411932	32411951	149.00	-20.73
CAediting_1333055	chr19_32411951_+	ENSG00000178904.17	ENST00000587077	hsa-miR-551b-3p	32411944	32411950	7mer-m8	32411931	32411951	154.00	-22.41
CAediting_1333067	chr19_32412803_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3186-5p	32412800	32412805	6mer	32412785	32412806	140.00	-27.28
CAediting_1333074	chr19_32412851_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3670	32412847	32412853	7mer-m8	32412832	32412854	155.00	-14.76
CAediting_1333074	chr19_32412851_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3670	32412847	32412853	7mer-m8	32412832	32412854	155.00	-14.76
CAediting_1333074	chr19_32412851_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3670	32412847	32412853	7mer-m8	32412832	32412854	155.00	-14.76
CAediting_1333074	chr19_32412851_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3670	32412847	32412853	7mer-m8	32412832	32412854	155.00	-14.76
CAediting_1333052	chr19_32411770_+	ENSG00000178904.17	ENST00000587077	hsa-miR-505-3p	32411768	32411774	7mer-m8	32411756	32411775	153.00	-22.22
CAediting_1333057	chr19_32411993_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3934-3p	32411989	32411995	7mer-m8	32411976	32411996	148.00	-15.34
CAediting_1333057	chr19_32411993_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4514	32411986	32411993	8mer-1a	32411976	32411993	155.00	-19.15
CAediting_1333057	chr19_32411993_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4692	32411986	32411993	8mer-1a	32411972	32411993	145.00	-18.25
CAediting_1333058	chr19_32412007_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3683	32412002	32412007	6mer	32411985	32412008	148.00	-20.24
CAediting_1333062	chr19_32412680_+	ENSG00000178904.17	ENST00000587077	hsa-miR-371a-3p	32412678	32412684	7mer-m8	32412663	32412685	145.00	-17.36
CAediting_1333065	chr19_32412774_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3680-3p	32412771	32412778	8mer-1a	32412756	32412778	140.00	-14.34
CAediting_1333065	chr19_32412774_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3680-3p	32412771	32412778	8mer-1a	32412756	32412778	140.00	-14.34
CAediting_1333068	chr19_32412809_+	ENSG00000178904.17	ENST00000587077	hsa-miR-513a-5p	32412803	32412809	7mer-m8	32412793	32412810	156.00	-22.91
CAediting_1333068	chr19_32412809_+	ENSG00000178904.17	ENST00000587077	hsa-miR-513a-5p	32412803	32412809	7mer-m8	32412793	32412810	156.00	-22.91
CAediting_1333068	chr19_32412809_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5694	32412807	32412812	6mer	32412793	32412813	151.00	-17.19
CAediting_1333069	chr19_32412810_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3672	32412808	32412814	7mer-m8	32412792	32412815	148.00	-14.27
CAediting_1333069	chr19_32412810_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6864-3p	32412808	32412814	7mer-m8	32412795	32412815	142.00	-10.40
CAediting_1333070	chr19_32412819_+	ENSG00000178904.17	ENST00000587077	hsa-miR-646	32412814	32412820	7mer-m8	32412803	32412821	145.00	-15.05
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6771-5p	32411687	32411693	7mer-m8	32411675	32411694	164.00	-35.58
CAediting_1333050	chr19_32411694_+	ENSG00000178904.17	ENST00000587077	hsa-miR-7851-3p	32411689	32411696	8mer-1a	32411675	32411696	168.00	-28.59
CAediting_1333054	chr19_32411828_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3189-3p	32411822	32411828	7mer-m8	32411810	32411829	145.00	-22.72
CAediting_1333054	chr19_32411828_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6813-3p	32411823	32411829	7mer-m8	32411810	32411830	140.00	-11.64
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-340-3p	32412059	32412065	7mer-m8	32412045	32412066	141.00	-15.89
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6827-3p	32412059	32412065	7mer-m8	32412046	32412066	147.00	-16.55
CAediting_1333075	chr19_32412862_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5193	32412856	32412863	8mer-1a	32412845	32412866	152.00	-22.38
CAediting_1333075	chr19_32412862_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5193	32412859	32412865	7mer-m8	32412845	32412866	152.00	-22.38
CAediting_1333076	chr19_32412871_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6511b-3p	32412870	32412875	6mer	32412854	32412876	140.00	-22.92
CAediting_1333076	chr19_32412871_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6511b-3p	32412870	32412875	6mer	32412854	32412876	140.00	-22.92
CAediting_1333076	chr19_32412871_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6784-3p	32412870	32412875	6mer	32412854	32412876	143.00	-25.15
CAediting_1333077	chr19_32412887_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6787-5p	32412883	32412889	7mer-1a	32412868	32412889	144.00	-31.77
CAediting_1333135	chr19_32482484_+	ENSG00000178904.17	ENST00000586987	hsa-miR-483-3p	32482482	32482489	8mer-1a	32482469	32482489	140.00	-13.25
CAediting_1333135	chr19_32482484_+	ENSG00000178904.17	ENST00000586987	hsa-miR-6508-5p	32482477	32482483	7mer-m8	32482463	32482484	143.00	-9.33
CAediting_1333135	chr19_32482484_+	ENSG00000178904.17	ENST00000342179	hsa-miR-483-3p	32482482	32482489	8mer-1a	32482469	32482489	140.00	-13.25
CAediting_1333135	chr19_32482484_+	ENSG00000178904.17	ENST00000342179	hsa-miR-6508-5p	32482477	32482483	7mer-m8	32482463	32482484	143.00	-9.33
CAediting_1333135	chr19_32482484_+	ENSG00000178904.17	ENST00000588648	hsa-miR-483-3p	32482482	32482489	8mer-1a	32482469	32482489	140.00	-13.25
CAediting_1333135	chr19_32482484_+	ENSG00000178904.17	ENST00000588648	hsa-miR-6508-5p	32482477	32482483	7mer-m8	32482463	32482484	143.00	-9.33

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-10a-5p	32412062	32412068	7mer-m8	32412047	32412069	149	-13.18
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-10b-5p	32412062	32412068	7mer-m8	32412038	32412069	144	-16.45
CAediting_1333071	chr19_32412823_+	ENSG00000178904.17	ENST00000587077	hsa-miR-1200	32412819	32412825	7mer-m8	32412807	32412826	146	-23.05
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-12126	32411689	32411696	8mer-1a	32411672	32411696	148	-17.81
CAediting_1333050	chr19_32411694_+	ENSG00000178904.17	ENST00000587077	hsa-miR-12126	32411689	32411696	8mer-1a	32411672	32411696	148	-17.81
CAediting_1333075	chr19_32412862_+	ENSG00000178904.17	ENST00000587077	hsa-miR-1236-3p	32412858	32412864	7mer-m8	32412844	32412865	149	-22.1
CAediting_1333063	chr19_32412710_+	ENSG00000178904.17	ENST00000587077	hsa-miR-1245a	32412705	32412711	7mer-m8	32412692	32412712	153	-18.23
CAediting_1333079	chr19_32412917_+	ENSG00000178904.17	ENST00000587077	hsa-miR-137-3p	32412913	32412919	7mer-m8	32412898	32412920	141	-9.5
CAediting_1333056	chr19_32411956_+	ENSG00000178904.17	ENST00000587077	hsa-miR-17-3p	32411950	32411956	7mer-m8	32411939	32411957	152	-17.77
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-30b-3p	32411686	32411693	8mer-1a	32411672	32411693	144	-14.67
CAediting_1333066	chr19_32412801_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3650	32412798	32412804	7mer-m8	32412787	32412805	142	-14.28
CAediting_1333067	chr19_32412803_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3650	32412798	32412804	7mer-m8	32412787	32412805	142	-14.28
CAediting_1333078	chr19_32412909_+	ENSG00000178904.17	ENST00000587077	hsa-miR-367-5p	32412906	32412913	8mer-1a	32412892	32412913	143	-12.17
CAediting_1333048	chr19_32411645_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3674	32411642	32411647	6mer	32411626	32411648	142	-18.1
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3689a-3p	32411686	32411693	8mer-1a	32411673	32411693	143	-15.59
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3689b-3p	32411686	32411693	8mer-1a	32411673	32411693	143	-14.57
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3689c	32411686	32411693	8mer-1a	32411673	32411693	143	-14.57
CAediting_1333067	chr19_32412803_+	ENSG00000178904.17	ENST00000587077	hsa-miR-3934-5p	32412800	32412806	7mer-m8	32412785	32412807	151	-20.05
CAediting_1333053	chr19_32411818_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4329	32411812	32411818	7mer-m8	32411800	32411819	143	-14.79
CAediting_1333053	chr19_32411818_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4478	32411815	32411821	7mer-m8	32411807	32411822	149	-22.29
CAediting_1333077	chr19_32412887_+	ENSG00000178904.17	ENST00000587077	hsa-miR-450b-3p	32412880	32412886	7mer-m8	32412865	32412887	145	-13.77
CAediting_1333052	chr19_32411770_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4517	32411766	32411771	6mer	32411748	32411772	144	-17.48
CAediting_1333077	chr19_32412887_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4654	32412881	32412887	7mer-m8	32412867	32412888	150	-22.95
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4725-5p	32412063	32412069	7mer-m8	32412050	32412070	140	-15.96
CAediting_1333077	chr19_32412887_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4769-5p	32412881	32412887	7mer-m8	32412865	32412888	140	-18.21
CAediting_1333076	chr19_32412871_+	ENSG00000178904.17	ENST00000587077	hsa-miR-4772-3p	32412865	32412871	7mer-m8	32412850	32412872	154	-19.74
CAediting_1333053	chr19_32411818_+	ENSG00000178904.17	ENST00000587077	hsa-miR-485-5p	32411816	32411822	7mer-m8	32411801	32411823	145	-15.52
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-504-5p	32412063	32412069	7mer-m8	32412048	32412070	154	-22.93
CAediting_1333062	chr19_32412680_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5089-5p	32412673	32412679	7mer-m8	32412659	32412680	145	-13.45
CAediting_1333062	chr19_32412680_+	ENSG00000178904.17	ENST00000587077	hsa-miR-512-3p	32412678	32412684	7mer-m8	32412664	32412685	149	-15.51
CAediting_1333062	chr19_32412680_+	ENSG00000178904.17	ENST00000587077	hsa-miR-512-3p	32412678	32412684	7mer-m8	32412664	32412685	149	-15.51
CAediting_1333055	chr19_32411951_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5190	32411947	32411953	7mer-m8	32411933	32411954	146	-16.23
CAediting_1333058	chr19_32412007_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5190	32412003	32412009	7mer-m8	32411992	32412010	152	-22.22
CAediting_1333067	chr19_32412803_+	ENSG00000178904.17	ENST00000587077	hsa-miR-552-3p	32412801	32412808	8mer-1a	32412789	32412808	146	-14.94
CAediting_1333051	chr19_32411729_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5589-5p	32411724	32411730	7mer-m8	32411713	32411731	151	-20.45
CAediting_1333079	chr19_32412917_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5691	32412910	32412917	8mer-1a	32412895	32412917	146	-19.21
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-5699-3p	32412060	32412066	7mer-m8	32412046	32412067	148	-16.39
CAediting_1333048	chr19_32411645_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6073	32411639	32411646	8mer-1a	32411627	32411646	152	-16.35
CAediting_1333068	chr19_32412809_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6504-3p	32412804	32412810	7mer-m8	32412792	32412811	140	-7.62
CAediting_1333069	chr19_32412810_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6504-3p	32412804	32412810	7mer-m8	32412792	32412811	140	-7.62
CAediting_1333062	chr19_32412680_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6506-5p	32412674	32412680	7mer-m8	32412659	32412681	144	-16.1
CAediting_1333051	chr19_32411729_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6776-5p	32411723	32411729	7mer-m8	32411712	32411730	154	-21.51
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6779-5p	32411686	32411693	8mer-1a	32411675	32411693	148	-19.45
CAediting_1333061	chr19_32412065_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6818-3p	32412058	32412064	7mer-m8	32412044	32412065	140	-11.1
CAediting_1333066	chr19_32412801_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6867-5p	32412796	32412802	7mer-1a	32412782	32412804	145	-15.31
CAediting_1333066	chr19_32412801_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6867-5p	32412797	32412803	7mer-m8	32412782	32412804	145	-15.31
CAediting_1333070	chr19_32412819_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6869-5p	32412816	32412822	7mer-m8	32412802	32412823	145	-15.21
CAediting_1333071	chr19_32412823_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6869-5p	32412816	32412822	7mer-m8	32412802	32412823	145	-15.21
CAediting_1333056	chr19_32411956_+	ENSG00000178904.17	ENST00000587077	hsa-miR-6884-5p	32411954	32411961	8mer-1a	32411939	32411961	151	-21.8
CAediting_1333078	chr19_32412909_+	ENSG00000178904.17	ENST00000587077	hsa-miR-744-3p	32412905	32412911	7mer-m8	32412891	32412912	140	-14.79
CAediting_1333077	chr19_32412887_+	ENSG00000178904.17	ENST00000587077	hsa-miR-769-3p	32412880	32412886	7mer-m8	32412865	32412887	152	-19.81
CAediting_1333055	chr19_32411951_+	ENSG00000178904.17	ENST00000587077	hsa-miR-7973	32411945	32411951	7mer-m8	32411933	32411952	140	-13.2
CAediting_1333055	chr19_32411951_+	ENSG00000178904.17	ENST00000587077	hsa-miR-7973	32411945	32411951	7mer-m8	32411933	32411952	140	-13.2
CAediting_1333072	chr19_32412845_+	ENSG00000178904.17	ENST00000587077	hsa-miR-8062	32412840	32412846	7mer-m8	32412825	32412847	144	-10.32
CAediting_1333063	chr19_32412710_+	ENSG00000178904.17	ENST00000587077	hsa-miR-8079	32412705	32412711	7mer-m8	32412694	32412712	151	-17.19
CAediting_1333075	chr19_32412862_+	ENSG00000178904.17	ENST00000587077	hsa-miR-877-3p	32412859	32412865	7mer-m8	32412845	32412866	151	-22.54
CAediting_1333049	chr19_32411693_+	ENSG00000178904.17	ENST00000587077	hsa-miR-887-5p	32411687	32411693	7mer-m8	32411673	32411694	149	-21
CAediting_1333050	chr19_32411694_+	ENSG00000178904.17	ENST00000587077	hsa-miR-887-5p	32411687	32411693	7mer-m8	32411673	32411694	149	-21
CAediting_1333048	chr19_32411645_+	ENSG00000178904.17	ENST00000587077	hsa-miR-921	32411638	32411644	7mer-m8	32411622	32411645	145	-16.72
CAediting_1333077	chr19_32412887_+	ENSG00000178904.17	ENST00000587077	hsa-miR-92a-2-5p	32412883	32412889	7mer-1a	32412868	32412889	140	-20.35

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_846604	chr11_93733708_-	ENSG00000178904.17	ENST00000586987	hsa-miR-1304-3p	32483901	32483907	7mer-m8	32483888	32483908	149	-14.73
CAediting_393	chr1_1167164_+	ENSG00000178904.17	ENST00000586987	hsa-miR-200b-3p	32483625	32483631	7mer-m8	32483611	32483632	160	-12.3
CAediting_846604	chr11_93733708_-	ENSG00000178904.17	ENST00000342179	hsa-miR-1304-3p	32483901	32483907	7mer-m8	32483888	32483908	149	-14.73
CAediting_393	chr1_1167164_+	ENSG00000178904.17	ENST00000342179	hsa-miR-200b-3p	32483625	32483631	7mer-m8	32483611	32483632	160	-12.3
CAediting_748296	chr10_51299626_+	ENSG00000178904.17	ENST00000588648	hsa-miR-605-3p	32480439	32480445	7mer-m8	32480425	32480446	140	-13.83
CAediting_1229414	chr17_67471546_+	ENSG00000178904.17	ENST00000587077	hsa-miR-548aa	32412126	32412132	7mer-m8	32412109	32412133	140	-11.57
CAediting_604450	chr7_133034877_-	ENSG00000178904.17	ENST00000587077	hsa-miR-3654	32411857	32411863	7mer-m8	32411848	32411864	146	-20.68
CAediting_524911	chr7_5495852_-	ENSG00000178904.17	ENST00000587077	hsa-miR-589-3p	32411906	32411912	7mer-m8	32411891	32411913	160	-20.42
CAediting_1054808	chr15_66496985_-	ENSG00000178904.17	ENST00000586987	hsa-miR-4512	32484608	32484614	7mer-m8	32484594	32484615	143	-22.76
CAediting_442554	chr5_154685830_+	ENSG00000178904.17	ENST00000586987	hsa-miR-1303	32483256	32483262	7mer-m8	32483240	32483263	151	-19.66
CAediting_442554	chr5_154685830_+	ENSG00000178904.17	ENST00000586987	hsa-miR-1303	32484335	32484341	7mer-m8	32484321	32484342	140	-11.11
CAediting_1054808	chr15_66496985_-	ENSG00000178904.17	ENST00000342179	hsa-miR-4512	32484608	32484614	7mer-m8	32484594	32484615	143	-22.76
CAediting_442554	chr5_154685830_+	ENSG00000178904.17	ENST00000342179	hsa-miR-1303	32483256	32483262	7mer-m8	32483240	32483263	151	-19.66
CAediting_442554	chr5_154685830_+	ENSG00000178904.17	ENST00000342179	hsa-miR-1303	32484335	32484341	7mer-m8	32484321	32484342	140	-11.11
CAediting_414656	chr5_72878640_+	ENSG00000178904.17	ENST00000588648	hsa-miR-4804-3p	32477576	32477582	7mer-m8	32477562	32477583	154	-20.19
CAediting_1229415	chr17_67471547_+	ENSG00000178904.17	ENST00000588648	hsa-miR-548aa	32481838	32481844	7mer-m8	32481821	32481845	158	-13.54
CAediting_442554	chr5_154685830_+	ENSG00000178904.17	ENST00000588648	hsa-miR-1303	32483256	32483262	7mer-m8	32483240	32483263	151	-19.66
CAediting_414656	chr5_72878640_+	ENSG00000178904.17	ENST00000592832	hsa-miR-4804-3p	32477576	32477582	7mer-m8	32477562	32477583	154	-20.19

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000178904.17	ENST00000587077	hsa-miR-548aa	32412569	32412575	7mer-m8	32412552	32412576	147	-14.21
CAediting_1229414	chr17_67471546_+	ENSG00000178904.17	ENST00000587077	hsa-miR-548aa	32412569	32412575	7mer-m8	32412552	32412576	147	-14.21
CAediting_980496	chr14_31014685_-	ENSG00000178904.17	ENST00000587077	hsa-miR-624-3p	32411796	32411802	7mer-m8	32411784	32411803	143	-16.44
CAediting_393	chr1_1167164_+	ENSG00000178904.17	ENST00000586987	hsa-miR-200b-3p	32484329	32484335	7mer-m8	32484315	32484336	147	-8.51
CAediting_1054808	chr15_66496985_-	ENSG00000178904.17	ENST00000586987	hsa-miR-4512	32483274	32483280	7mer-m8	32483259	32483281	150	-21.04
CAediting_1229415	chr17_67471547_+	ENSG00000178904.17	ENST00000586987	hsa-miR-548aa	32485425	32485431	7mer-m8	32485406	32485432	153	-18.9
CAediting_1229414	chr17_67471546_+	ENSG00000178904.17	ENST00000586987	hsa-miR-548aa	32485425	32485431	7mer-m8	32485406	32485432	153	-18.9
CAediting_228905	chr2_188297554_+	ENSG00000178904.17	ENST00000586987	hsa-miR-561-3p	32483835	32483842	8mer-1a	32483819	32483842	154	-7.42
CAediting_228905	chr2_188297554_+	ENSG00000178904.17	ENST00000586987	hsa-miR-561-3p	32483099	32483105	7mer-m8	32483084	32483106	155	-7.1
CAediting_393	chr1_1167164_+	ENSG00000178904.17	ENST00000342179	hsa-miR-200b-3p	32484329	32484335	7mer-m8	32484315	32484336	147	-8.51
CAediting_1054808	chr15_66496985_-	ENSG00000178904.17	ENST00000342179	hsa-miR-4512	32483274	32483280	7mer-m8	32483259	32483281	150	-21.04
CAediting_1229415	chr17_67471547_+	ENSG00000178904.17	ENST00000342179	hsa-miR-548aa	32485425	32485431	7mer-m8	32485406	32485432	153	-18.9
CAediting_1229414	chr17_67471546_+	ENSG00000178904.17	ENST00000342179	hsa-miR-548aa	32485425	32485431	7mer-m8	32485406	32485432	153	-18.9
CAediting_228905	chr2_188297554_+	ENSG00000178904.17	ENST00000342179	hsa-miR-561-3p	32483835	32483842	8mer-1a	32483819	32483842	154	-7.42
CAediting_228905	chr2_188297554_+	ENSG00000178904.17	ENST00000342179	hsa-miR-561-3p	32483099	32483105	7mer-m8	32483084	32483106	155	-7.1

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for DPY19L3

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for DPY19L3

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for DPY19L3

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for DPY19L3

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for DPY19L3

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for DPY19L3

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene