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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: ZNF548 (CAeditome ID:147694) |
Gene summary for ZNF548 |
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Gene information | Gene symbol | ZNF548 | Gene ID | 147694 |
Gene name | zinc finger protein 548 | |
Synonyms | - | |
Cytomap | 19q13.43 | |
Type of gene | protein-coding | |
Description | zinc finger protein 548 | |
Modification date | 20210518 | |
UniProtAcc | Q8NEK5 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
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RNA A-to-I events for ZNF548 |
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CAediting_1392663(57399712, +), CAediting_1392664(57400456, +), CAediting_1392665(57400458, +), CAediting_1392666(57400476, +), CAediting_1392667(57400507, +), CAediting_1392668(57400513, +), CAediting_1392669(57400559, +), CAediting_1392670(57400562, +), CAediting_1392671(57400588, +), CAediting_1392672(57400618, +), CAediting_1392673(57400632, +), CAediting_1392674(57400640, +), CAediting_1392675(57400694, +), CAediting_1392676(57400695, +), CAediting_1392677(57401340, +), |
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RNA editing positional annotations for ZNF548 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_1392663 | chr19_57399712_+ | exonic |
CAediting_1392664 | chr19_57400456_+ | ncRNA_intronic |
CAediting_1392665 | chr19_57400458_+ | ncRNA_intronic |
CAediting_1392666 | chr19_57400476_+ | ncRNA_intronic |
CAediting_1392667 | chr19_57400507_+ | ncRNA_intronic |
CAediting_1392668 | chr19_57400513_+ | ncRNA_intronic |
CAediting_1392669 | chr19_57400559_+ | ncRNA_intronic |
CAediting_1392670 | chr19_57400562_+ | ncRNA_intronic |
CAediting_1392671 | chr19_57400588_+ | ncRNA_intronic |
CAediting_1392672 | chr19_57400618_+ | ncRNA_intronic |
CAediting_1392673 | chr19_57400632_+ | ncRNA_intronic |
CAediting_1392674 | chr19_57400640_+ | ncRNA_intronic |
CAediting_1392675 | chr19_57400694_+ | ncRNA_intronic |
CAediting_1392676 | chr19_57400695_+ | ncRNA_intronic |
CAediting_1392677 | chr19_57401340_+ | ncRNA_intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_1392664 | chr19_57400456_+ | SINE | Alu | AluY |
CAediting_1392665 | chr19_57400458_+ | SINE | Alu | AluY |
CAediting_1392666 | chr19_57400476_+ | SINE | Alu | AluY |
CAediting_1392667 | chr19_57400507_+ | SINE | Alu | AluY |
CAediting_1392668 | chr19_57400513_+ | SINE | Alu | AluY |
CAediting_1392669 | chr19_57400559_+ | SINE | Alu | AluY |
CAediting_1392670 | chr19_57400562_+ | SINE | Alu | AluY |
CAediting_1392671 | chr19_57400588_+ | SINE | Alu | AluY |
CAediting_1392672 | chr19_57400618_+ | SINE | Alu | AluY |
CAediting_1392673 | chr19_57400632_+ | SINE | Alu | AluY |
CAediting_1392674 | chr19_57400640_+ | SINE | Alu | AluY |
CAediting_1392675 | chr19_57400694_+ | SINE | Alu | AluY |
CAediting_1392676 | chr19_57400695_+ | SINE | Alu | AluY |
CAediting_1392677 | chr19_57401340_+ | DNA | TcMar-Tigger | MER2 |
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RNA A-to-I editing events in the alternative splicing sites for ZNF548 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF548 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for ZNF548 |
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The effects of the RNA editing to the miRNA binding sites for ZNF548 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_86358 | chr1_109598906_+ | ENSG00000188785.10 | ENST00000597400 | hsa-miR-197-5p | 57398534 | 57398540 | 7mer-m8 | 57398519 | 57398541 | 140 | -20.51 |
CAediting_604450 | chr7_133034877_- | ENSG00000188785.10 | ENST00000597400 | hsa-miR-3654 | 57398520 | 57398526 | 7mer-m8 | 57398509 | 57398527 | 152 | -23.35 |
CAediting_573001 | chr7_92204086_- | ENSG00000188785.10 | ENST00000597400 | hsa-miR-1285-5p | 57398543 | 57398550 | 8mer-1a | 57398530 | 57398550 | 151 | -18.13 |
CAediting_1306323 | chr19_13836462_- | ENSG00000188785.10 | ENST00000602086 | hsa-miR-27a-3p | 57397129 | 57397135 | 7mer-m8 | 57397115 | 57397136 | 149 | -15.87 |
CAediting_604450 | chr7_133034877_- | ENSG00000188785.10 | ENST00000602086 | hsa-miR-3654 | 57398520 | 57398526 | 7mer-m8 | 57398509 | 57398527 | 152 | -23.35 |
CAediting_1306323 | chr19_13836462_- | ENSG00000188785.10 | ENST00000600442 | hsa-miR-27a-3p | 57397129 | 57397135 | 7mer-m8 | 57397115 | 57397136 | 149 | -15.87 |
CAediting_1306323 | chr19_13836462_- | ENSG00000188785.10 | ENST00000597047 | hsa-miR-27a-3p | 57397129 | 57397135 | 7mer-m8 | 57397115 | 57397136 | 149 | -15.87 |
CAediting_86358 | chr1_109598906_+ | ENSG00000188785.10 | ENST00000597047 | hsa-miR-197-5p | 57398534 | 57398540 | 7mer-m8 | 57398519 | 57398541 | 140 | -20.51 |
CAediting_604450 | chr7_133034877_- | ENSG00000188785.10 | ENST00000597047 | hsa-miR-3654 | 57398520 | 57398526 | 7mer-m8 | 57398509 | 57398527 | 152 | -23.35 |
CAediting_573001 | chr7_92204086_- | ENSG00000188785.10 | ENST00000597047 | hsa-miR-1285-5p | 57398543 | 57398550 | 8mer-1a | 57398530 | 57398550 | 151 | -18.13 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for ZNF548 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for ZNF548 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for ZNF548 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for ZNF548 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for ZNF548 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for ZNF548 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |