Home

Download

Statistics

Examples

Help

Contact

Editing gene: ZNF534 (CAeditome ID:147658)

Gene summary for ZNF534

Gene summary

Gene information	Gene symbol	ZNF534
	Gene ID	147658
	Gene name	zinc finger protein 534
	Synonyms	KRBO3
	Cytomap	19q13.41
	Type of gene	protein-coding
	Description	zinc finger protein 534KRAB domain only 3KRAB domain only protein 3
	Modification date	20210518
	UniProtAcc	Q76KX8
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

Top

RNA A-to-I events for ZNF534

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000198633.9

RNA A-to-I editing events in Cancer.

CAediting_1381650(52440525, +), CAediting_1381651(52440526, +), CAediting_1381652(52440571, +), CAediting_1381653(52440594, +), CAediting_1381654(52440616, +), CAediting_1381655(52440619, +), CAediting_1381656(52440621, +), CAediting_1381657(52440622, +), CAediting_1381658(52440625, +), CAediting_1381659(52440631, +), CAediting_1381660(52440660, +), CAediting_1381661(52440661, +), CAediting_1381662(52440666, +), CAediting_1381663(52440670, +), CAediting_1381664(52440700, +), CAediting_1381665(52440706, +), CAediting_1381666(52440726, +), CAediting_1381667(52440730, +), CAediting_1381668(52440731, +), CAediting_1381669(52440734, +), CAediting_1381670(52440744, +), CAediting_1381671(52440927, +), CAediting_1381672(52440966, +), CAediting_1381673(52440971, +), CAediting_1381674(52440995, +), CAediting_1381675(52441001, +), CAediting_1381676(52441002, +), CAediting_1381677(52441020, +), CAediting_1381678(52441035, +), CAediting_1381679(52441041, +), CAediting_1381680(52441044, +), CAediting_1381681(52441071, +), CAediting_1381682(52441089, +), CAediting_1381683(52441166, +), CAediting_1381684(52441184, +), CAediting_1381685(52441253, +), CAediting_1381686(52441257, +), CAediting_1381687(52441259, +), CAediting_1381688(52441260, +), CAediting_1381689(52441265, +), CAediting_1381690(52441281, +), CAediting_1381691(52441320, +), CAediting_1381692(52441329, +), CAediting_1381693(52441351, +), CAediting_1381694(52441354, +), CAediting_1381695(52441363, +), CAediting_1381696(52441364, +), CAediting_1381697(52441386, +), CAediting_1381698(52441390, +), CAediting_1381699(52441400, +), CAediting_1381700(52441424, +), CAediting_1381701(52441430, +), CAediting_1381702(52441435, +), CAediting_1381703(52441440, +),

Top

RNA editing positional annotations for ZNF534 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1381650	chr19_52440525_+	intronic
CAediting_1381651	chr19_52440526_+	intronic
CAediting_1381652	chr19_52440571_+	intronic
CAediting_1381653	chr19_52440594_+	intronic
CAediting_1381654	chr19_52440616_+	intronic
CAediting_1381655	chr19_52440619_+	intronic
CAediting_1381656	chr19_52440621_+	intronic
CAediting_1381657	chr19_52440622_+	intronic
CAediting_1381658	chr19_52440625_+	intronic
CAediting_1381659	chr19_52440631_+	intronic
CAediting_1381660	chr19_52440660_+	intronic
CAediting_1381661	chr19_52440661_+	intronic
CAediting_1381662	chr19_52440666_+	intronic
CAediting_1381663	chr19_52440670_+	intronic
CAediting_1381664	chr19_52440700_+	intronic
CAediting_1381665	chr19_52440706_+	intronic
CAediting_1381666	chr19_52440726_+	intronic
CAediting_1381667	chr19_52440730_+	intronic
CAediting_1381668	chr19_52440731_+	intronic
CAediting_1381669	chr19_52440734_+	intronic
CAediting_1381670	chr19_52440744_+	intronic
CAediting_1381671	chr19_52440927_+	intronic
CAediting_1381672	chr19_52440966_+	intronic
CAediting_1381673	chr19_52440971_+	intronic
CAediting_1381674	chr19_52440995_+	intronic
CAediting_1381675	chr19_52441001_+	intronic
CAediting_1381676	chr19_52441002_+	intronic
CAediting_1381677	chr19_52441020_+	intronic
CAediting_1381678	chr19_52441035_+	intronic
CAediting_1381679	chr19_52441041_+	intronic
CAediting_1381680	chr19_52441044_+	intronic
CAediting_1381681	chr19_52441071_+	intronic
CAediting_1381682	chr19_52441089_+	intronic
CAediting_1381683	chr19_52441166_+	intronic
CAediting_1381684	chr19_52441184_+	intronic
CAediting_1381685	chr19_52441253_+	intronic
CAediting_1381686	chr19_52441257_+	intronic
CAediting_1381687	chr19_52441259_+	intronic
CAediting_1381688	chr19_52441260_+	intronic
CAediting_1381689	chr19_52441265_+	intronic
CAediting_1381690	chr19_52441281_+	intronic
CAediting_1381691	chr19_52441320_+	intronic
CAediting_1381692	chr19_52441329_+	intronic
CAediting_1381693	chr19_52441351_+	intronic
CAediting_1381694	chr19_52441354_+	intronic
CAediting_1381695	chr19_52441363_+	intronic
CAediting_1381696	chr19_52441364_+	intronic
CAediting_1381697	chr19_52441386_+	intronic
CAediting_1381698	chr19_52441390_+	intronic
CAediting_1381699	chr19_52441400_+	intronic
CAediting_1381700	chr19_52441424_+	intronic
CAediting_1381701	chr19_52441430_+	intronic
CAediting_1381702	chr19_52441435_+	intronic
CAediting_1381703	chr19_52441440_+	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1381650	chr19_52440525_+	SINE	Alu	AluSx1
CAediting_1381651	chr19_52440526_+	SINE	Alu	AluSx1
CAediting_1381652	chr19_52440571_+	SINE	Alu	AluSx1
CAediting_1381653	chr19_52440594_+	SINE	Alu	AluSx1
CAediting_1381654	chr19_52440616_+	SINE	Alu	AluSx1
CAediting_1381655	chr19_52440619_+	SINE	Alu	AluSx1
CAediting_1381656	chr19_52440621_+	SINE	Alu	AluSx1
CAediting_1381657	chr19_52440622_+	SINE	Alu	AluSx1
CAediting_1381658	chr19_52440625_+	SINE	Alu	AluSx1
CAediting_1381659	chr19_52440631_+	SINE	Alu	AluSx1
CAediting_1381660	chr19_52440660_+	SINE	Alu	AluSx1
CAediting_1381661	chr19_52440661_+	SINE	Alu	AluSx1
CAediting_1381662	chr19_52440666_+	SINE	Alu	AluSx1
CAediting_1381663	chr19_52440670_+	SINE	Alu	AluSx1
CAediting_1381664	chr19_52440700_+	SINE	Alu	AluSx1
CAediting_1381665	chr19_52440706_+	SINE	Alu	AluSx1
CAediting_1381666	chr19_52440726_+	SINE	Alu	AluSx1
CAediting_1381667	chr19_52440730_+	SINE	Alu	AluSx1
CAediting_1381668	chr19_52440731_+	SINE	Alu	AluSx1
CAediting_1381669	chr19_52440734_+	SINE	Alu	AluSx1
CAediting_1381670	chr19_52440744_+	SINE	Alu	AluSx1
CAediting_1381671	chr19_52440927_+	SINE	Alu	AluSc8
CAediting_1381672	chr19_52440966_+	SINE	Alu	AluSc8
CAediting_1381673	chr19_52440971_+	SINE	Alu	AluSc8
CAediting_1381674	chr19_52440995_+	SINE	Alu	AluSc8
CAediting_1381675	chr19_52441001_+	SINE	Alu	AluSc8
CAediting_1381676	chr19_52441002_+	SINE	Alu	AluSc8
CAediting_1381677	chr19_52441020_+	SINE	Alu	AluSc8
CAediting_1381678	chr19_52441035_+	SINE	Alu	AluSc8
CAediting_1381679	chr19_52441041_+	SINE	Alu	AluSc8
CAediting_1381680	chr19_52441044_+	SINE	Alu	AluSc8
CAediting_1381681	chr19_52441071_+	SINE	Alu	AluSc8
CAediting_1381682	chr19_52441089_+	SINE	Alu	AluSc8
CAediting_1381683	chr19_52441166_+	SINE	Alu	AluSc8
CAediting_1381684	chr19_52441184_+	SINE	Alu	AluSc8
CAediting_1381685	chr19_52441253_+	SINE	Alu	AluJo
CAediting_1381686	chr19_52441257_+	SINE	Alu	AluJo
CAediting_1381687	chr19_52441259_+	SINE	Alu	AluJo
CAediting_1381688	chr19_52441260_+	SINE	Alu	AluJo
CAediting_1381689	chr19_52441265_+	SINE	Alu	AluJo
CAediting_1381690	chr19_52441281_+	SINE	Alu	AluJo
CAediting_1381691	chr19_52441320_+	SINE	Alu	AluJo
CAediting_1381692	chr19_52441329_+	SINE	Alu	AluJo
CAediting_1381693	chr19_52441351_+	SINE	Alu	AluJo
CAediting_1381694	chr19_52441354_+	SINE	Alu	AluJo
CAediting_1381695	chr19_52441363_+	SINE	Alu	AluJo
CAediting_1381696	chr19_52441364_+	SINE	Alu	AluJo
CAediting_1381697	chr19_52441386_+	SINE	Alu	AluJo
CAediting_1381698	chr19_52441390_+	SINE	Alu	AluJo
CAediting_1381699	chr19_52441400_+	SINE	Alu	AluJo
CAediting_1381700	chr19_52441424_+	SINE	Alu	AluJo
CAediting_1381701	chr19_52441430_+	SINE	Alu	AluJo
CAediting_1381702	chr19_52441435_+	SINE	Alu	AluJo
CAediting_1381703	chr19_52441440_+	SINE	Alu	AluJo

Top

RNA A-to-I editing events in the alternative splicing sites for ZNF534

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000198633.9.ZNF534.

Correlation between RNA A-to-I editing and PSI for ENSG00000198633.9.ZNF534.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF534

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

Top

Protein coding region RNA A-to-I editings for ZNF534

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

Top

The effects of the RNA editing to the miRNA binding sites for ZNF534

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZNF534

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

Top

Relation with ADAR for ZNF534

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
TGCT	CAediting_1381697	chr19_52441386_+	7.70441262411683e-07	0.551005323995378	.	.	.	.

Top

Relation with cancer stages for ZNF534

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

Top

Relation with survival for ZNF534

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

Top

RelatedDrugs for ZNF534

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

Top

RelatedDiseases for ZNF534

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene