CAeditome Logo

Home

Download

Statistics

Examples

Help

Contact

Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: TRIM16L (CAeditome ID:147166)

Gene summary for TRIM16L

check button Gene summary
Gene informationGene symbol

TRIM16L

Gene ID

147166

Gene nametripartite motif containing 16 like
SynonymsTRIM70
Cytomap

17p11.2

Type of geneprotein-coding
Descriptiontripartite motif-containing protein 16-like proteintripartite motif protein 70tripartite motif-containing protein 70
Modification date20210518
UniProtAcc

.

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
TRIM16L

GO:0005829

Tripartite motif-containing protein 16-like protein

0000052

TRIM16L

GO:0005886

Tripartite motif-containing protein 16-like protein

0000052


Top

RNA A-to-I events for TRIM16L

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000108448.19
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1168221(18702579, +), CAediting_1168222(18704233, +), CAediting_1168223(18704243, +), CAediting_1168224(18704290, +), CAediting_1168225(18704304, +), CAediting_1168226(18704312, +), CAediting_1168227(18718013, +), CAediting_1168228(18720104, +), CAediting_1168229(18720108, +), CAediting_1168230(18720111, +), CAediting_1168231(18720117, +), CAediting_1168232(18720121, +), CAediting_1168233(18720126, +), CAediting_1168234(18720127, +), CAediting_1168235(18720135, +), CAediting_1168236(18720136, +), CAediting_1168237(18720143, +), CAediting_1168238(18720149, +), CAediting_1168239(18720160, +), CAediting_1168240(18720164, +), CAediting_1168241(18720165, +), CAediting_1168242(18720172, +), CAediting_1168243(18720180, +), CAediting_1168244(18720185, +), CAediting_1168245(18720192, +), CAediting_1168246(18720197, +), CAediting_1168247(18720203, +), CAediting_1168248(18720205, +), CAediting_1168249(18720210, +), CAediting_1168250(18720218, +), CAediting_1168251(18722930, +), CAediting_1168252(18722937, +), CAediting_1168253(18722960, +), CAediting_1168254(18723005, +), CAediting_1168255(18723006, +), CAediting_1168256(18723050, +), CAediting_1168257(18723072, +), CAediting_1168258(18723078, +), CAediting_1168259(18723086, +), CAediting_1168260(18723099, +), CAediting_1168261(18723138, +), CAediting_1168262(18725728, +), CAediting_1168263(18725734, +), CAediting_1168264(18725735, +), CAediting_1168265(18725756, +), CAediting_1168266(18725775, +), CAediting_1168267(18725808, +), CAediting_1168268(18725811, +), CAediting_1168269(18725812, +), CAediting_1168270(18725825, +), CAediting_1168271(18725837, +), CAediting_1168272(18725839, +), CAediting_1168273(18725843, +), CAediting_1168274(18725851, +), CAediting_1168275(18725863, +), CAediting_1168276(18725879, +), CAediting_1168277(18725923, +), CAediting_1168278(18725938, +), CAediting_1168279(18725939, +), CAediting_1168280(18726517, +), CAediting_1168281(18726536, +), CAediting_1168282(18726547, +), CAediting_1168283(18726584, +), CAediting_1168284(18726596, +), CAediting_1168285(18726632, +), CAediting_1168286(18726633, +), CAediting_1168287(18726641, +), CAediting_1168288(18726647, +), CAediting_1168289(18726650, +), CAediting_1168290(18726667, +), CAediting_1168291(18726672, +), CAediting_1168292(18726696, +), CAediting_1168293(18726704, +), CAediting_1168294(18726717, +), CAediting_1168295(18729525, +), CAediting_1168296(18729741, +), CAediting_1168297(18730020, +), CAediting_1168298(18730026, +), CAediting_1168299(18730054, +), CAediting_1168300(18730056, +), CAediting_1168301(18730062, +), CAediting_1168302(18730072, +), CAediting_1168303(18730085, +), CAediting_1168304(18730089, +), CAediting_1168305(18730095, +), CAediting_1168306(18730108, +), CAediting_1168307(18735673, +), CAediting_1168308(18735707, +), CAediting_1168309(18735732, +), CAediting_1168310(18735751, +), CAediting_1168311(18735781, +), CAediting_1168312(18735793, +), CAediting_1168313(18735804, +), CAediting_1168314(18735818, +), CAediting_1168315(18735827, +), CAediting_1168316(18735833, +), CAediting_1168317(18735836, +), CAediting_1168318(18735862, +), CAediting_1168319(18735873, +), CAediting_1168320(18735875, +), CAediting_1168321(18735894, +), CAediting_1168322(18735898, +), CAediting_1168323(18735911, +), CAediting_1168324(18735912, +), CAediting_1168325(18735913, +), CAediting_1168326(18735925, +), CAediting_1168327(18735927, +),

Top

RNA editing positional annotations for TRIM16L using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1168221chr17_18702579_+ncRNA_intronic
CAediting_1168222chr17_18704233_+ncRNA_exonic
CAediting_1168223chr17_18704243_+ncRNA_exonic
CAediting_1168224chr17_18704290_+ncRNA_exonic
CAediting_1168225chr17_18704304_+ncRNA_exonic
CAediting_1168226chr17_18704312_+ncRNA_exonic
CAediting_1168227chr17_18718013_+ncRNA_intronic
CAediting_1168228chr17_18720104_+ncRNA_intronic
CAediting_1168229chr17_18720108_+ncRNA_intronic
CAediting_1168230chr17_18720111_+ncRNA_intronic
CAediting_1168231chr17_18720117_+ncRNA_intronic
CAediting_1168232chr17_18720121_+ncRNA_intronic
CAediting_1168233chr17_18720126_+ncRNA_intronic
CAediting_1168234chr17_18720127_+ncRNA_intronic
CAediting_1168235chr17_18720135_+ncRNA_intronic
CAediting_1168236chr17_18720136_+ncRNA_intronic
CAediting_1168237chr17_18720143_+ncRNA_intronic
CAediting_1168238chr17_18720149_+ncRNA_intronic
CAediting_1168239chr17_18720160_+ncRNA_intronic
CAediting_1168240chr17_18720164_+ncRNA_intronic
CAediting_1168241chr17_18720165_+ncRNA_intronic
CAediting_1168242chr17_18720172_+ncRNA_intronic
CAediting_1168243chr17_18720180_+ncRNA_intronic
CAediting_1168244chr17_18720185_+ncRNA_intronic
CAediting_1168245chr17_18720192_+ncRNA_intronic
CAediting_1168246chr17_18720197_+ncRNA_intronic
CAediting_1168247chr17_18720203_+ncRNA_intronic
CAediting_1168248chr17_18720205_+ncRNA_intronic
CAediting_1168249chr17_18720210_+ncRNA_intronic
CAediting_1168250chr17_18720218_+ncRNA_intronic
CAediting_1168251chr17_18722930_+ncRNA_intronic
CAediting_1168252chr17_18722937_+ncRNA_intronic
CAediting_1168253chr17_18722960_+ncRNA_intronic
CAediting_1168254chr17_18723005_+ncRNA_intronic
CAediting_1168255chr17_18723006_+ncRNA_intronic
CAediting_1168256chr17_18723050_+ncRNA_intronic
CAediting_1168257chr17_18723072_+ncRNA_intronic
CAediting_1168258chr17_18723078_+ncRNA_intronic
CAediting_1168259chr17_18723086_+ncRNA_intronic
CAediting_1168260chr17_18723099_+ncRNA_intronic
CAediting_1168261chr17_18723138_+ncRNA_intronic
CAediting_1168262chr17_18725728_+ncRNA_intronic
CAediting_1168263chr17_18725734_+ncRNA_intronic
CAediting_1168264chr17_18725735_+ncRNA_intronic
CAediting_1168265chr17_18725756_+ncRNA_intronic
CAediting_1168266chr17_18725775_+ncRNA_intronic
CAediting_1168267chr17_18725808_+ncRNA_intronic
CAediting_1168268chr17_18725811_+ncRNA_intronic
CAediting_1168269chr17_18725812_+ncRNA_intronic
CAediting_1168270chr17_18725825_+ncRNA_intronic
CAediting_1168271chr17_18725837_+ncRNA_intronic
CAediting_1168272chr17_18725839_+ncRNA_intronic
CAediting_1168273chr17_18725843_+ncRNA_intronic
CAediting_1168274chr17_18725851_+ncRNA_intronic
CAediting_1168275chr17_18725863_+ncRNA_intronic
CAediting_1168276chr17_18725879_+ncRNA_intronic
CAediting_1168277chr17_18725923_+ncRNA_intronic
CAediting_1168278chr17_18725938_+ncRNA_intronic
CAediting_1168279chr17_18725939_+ncRNA_intronic
CAediting_1168280chr17_18726517_+ncRNA_intronic
CAediting_1168281chr17_18726536_+ncRNA_intronic
CAediting_1168282chr17_18726547_+ncRNA_intronic
CAediting_1168283chr17_18726584_+ncRNA_intronic
CAediting_1168284chr17_18726596_+ncRNA_intronic
CAediting_1168285chr17_18726632_+ncRNA_intronic
CAediting_1168286chr17_18726633_+ncRNA_intronic
CAediting_1168287chr17_18726641_+ncRNA_intronic
CAediting_1168288chr17_18726647_+ncRNA_intronic
CAediting_1168289chr17_18726650_+ncRNA_intronic
CAediting_1168290chr17_18726667_+ncRNA_intronic
CAediting_1168291chr17_18726672_+ncRNA_intronic
CAediting_1168292chr17_18726696_+ncRNA_intronic
CAediting_1168293chr17_18726704_+ncRNA_intronic
CAediting_1168294chr17_18726717_+ncRNA_intronic
CAediting_1168295chr17_18729525_+ncRNA_intronic
CAediting_1168296chr17_18729741_+ncRNA_intronic
CAediting_1168297chr17_18730020_+ncRNA_intronic
CAediting_1168298chr17_18730026_+ncRNA_intronic
CAediting_1168299chr17_18730054_+ncRNA_intronic
CAediting_1168300chr17_18730056_+ncRNA_intronic
CAediting_1168301chr17_18730062_+ncRNA_intronic
CAediting_1168302chr17_18730072_+ncRNA_intronic
CAediting_1168303chr17_18730085_+ncRNA_intronic
CAediting_1168304chr17_18730089_+ncRNA_intronic
CAediting_1168305chr17_18730095_+ncRNA_intronic
CAediting_1168306chr17_18730108_+ncRNA_intronic
CAediting_1168307chr17_18735673_+UTR3
CAediting_1168308chr17_18735707_+UTR3
CAediting_1168309chr17_18735732_+UTR3
CAediting_1168310chr17_18735751_+UTR3
CAediting_1168311chr17_18735781_+UTR3
CAediting_1168312chr17_18735793_+UTR3
CAediting_1168313chr17_18735804_+UTR3
CAediting_1168314chr17_18735818_+UTR3
CAediting_1168315chr17_18735827_+UTR3
CAediting_1168316chr17_18735833_+UTR3
CAediting_1168317chr17_18735836_+UTR3
CAediting_1168318chr17_18735862_+UTR3
CAediting_1168319chr17_18735873_+UTR3
CAediting_1168320chr17_18735875_+UTR3
CAediting_1168321chr17_18735894_+UTR3
CAediting_1168322chr17_18735898_+UTR3
CAediting_1168323chr17_18735911_+UTR3
CAediting_1168324chr17_18735912_+UTR3
CAediting_1168325chr17_18735913_+UTR3
CAediting_1168326chr17_18735925_+UTR3
CAediting_1168327chr17_18735927_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1168221chr17_18702579_+SINEAluAluYk3
CAediting_1168222chr17_18704233_+SINEAluAluY
CAediting_1168223chr17_18704243_+SINEAluAluY
CAediting_1168224chr17_18704290_+SINEAluAluY
CAediting_1168225chr17_18704304_+SINEAluAluY
CAediting_1168226chr17_18704312_+SINEAluAluY
CAediting_1168227chr17_18718013_+SINEAluAluSx1
CAediting_1168228chr17_18720104_+SINEAluAluSg
CAediting_1168229chr17_18720108_+SINEAluAluSg
CAediting_1168230chr17_18720111_+SINEAluAluSg
CAediting_1168231chr17_18720117_+SINEAluAluSg
CAediting_1168232chr17_18720121_+SINEAluAluSg
CAediting_1168233chr17_18720126_+SINEAluAluSg
CAediting_1168234chr17_18720127_+SINEAluAluSg
CAediting_1168235chr17_18720135_+SINEAluAluSg
CAediting_1168236chr17_18720136_+SINEAluAluSg
CAediting_1168237chr17_18720143_+SINEAluAluSg
CAediting_1168238chr17_18720149_+SINEAluAluSg
CAediting_1168239chr17_18720160_+SINEAluAluSg
CAediting_1168240chr17_18720164_+SINEAluAluSg
CAediting_1168241chr17_18720165_+SINEAluAluSg
CAediting_1168242chr17_18720172_+SINEAluAluSg
CAediting_1168243chr17_18720180_+SINEAluAluSg
CAediting_1168244chr17_18720185_+SINEAluAluSg
CAediting_1168245chr17_18720192_+SINEAluAluSg
CAediting_1168246chr17_18720197_+SINEAluAluSg
CAediting_1168247chr17_18720203_+SINEAluAluSg
CAediting_1168248chr17_18720205_+SINEAluAluSg
CAediting_1168249chr17_18720210_+SINEAluAluSg
CAediting_1168250chr17_18720218_+SINEAluAluSg
CAediting_1168251chr17_18722930_+SINEAluAluSz
CAediting_1168252chr17_18722937_+SINEAluAluSz
CAediting_1168253chr17_18722960_+SINEAluAluSz
CAediting_1168254chr17_18723005_+SINEAluAluSz
CAediting_1168255chr17_18723006_+SINEAluAluSz
CAediting_1168256chr17_18723050_+SINEAluAluSz
CAediting_1168257chr17_18723072_+SINEAluAluSz
CAediting_1168258chr17_18723078_+SINEAluAluSz
CAediting_1168259chr17_18723086_+SINEAluAluSz
CAediting_1168260chr17_18723099_+SINEAluAluSz
CAediting_1168261chr17_18723138_+SINEAluAluSz
CAediting_1168262chr17_18725728_+SINEAluAluJr
CAediting_1168263chr17_18725734_+SINEAluAluJr
CAediting_1168264chr17_18725735_+SINEAluAluJr
CAediting_1168265chr17_18725756_+SINEAluAluJr
CAediting_1168266chr17_18725775_+SINEAluAluJr
CAediting_1168267chr17_18725808_+SINEAluAluJr
CAediting_1168268chr17_18725811_+SINEAluAluJr
CAediting_1168269chr17_18725812_+SINEAluAluJr
CAediting_1168270chr17_18725825_+SINEAluAluJr
CAediting_1168271chr17_18725837_+SINEAluAluJr
CAediting_1168272chr17_18725839_+SINEAluAluJr
CAediting_1168273chr17_18725843_+SINEAluAluJr
CAediting_1168274chr17_18725851_+SINEAluAluJr
CAediting_1168275chr17_18725863_+SINEAluAluJr
CAediting_1168276chr17_18725879_+SINEAluAluJr
CAediting_1168277chr17_18725923_+SINEAluAluJr
CAediting_1168278chr17_18725938_+SINEAluAluJr
CAediting_1168279chr17_18725939_+SINEAluAluJr
CAediting_1168280chr17_18726517_+SINEAluAluY
CAediting_1168281chr17_18726536_+SINEAluAluY
CAediting_1168282chr17_18726547_+SINEAluAluY
CAediting_1168283chr17_18726584_+SINEAluAluY
CAediting_1168284chr17_18726596_+SINEAluAluY
CAediting_1168285chr17_18726632_+SINEAluAluY
CAediting_1168286chr17_18726633_+SINEAluAluY
CAediting_1168287chr17_18726641_+SINEAluAluY
CAediting_1168288chr17_18726647_+SINEAluAluY
CAediting_1168289chr17_18726650_+SINEAluAluY
CAediting_1168290chr17_18726667_+SINEAluAluY
CAediting_1168291chr17_18726672_+SINEAluAluY
CAediting_1168292chr17_18726696_+SINEAluAluY
CAediting_1168293chr17_18726704_+SINEAluAluY
CAediting_1168294chr17_18726717_+SINEAluAluY
CAediting_1168295chr17_18729525_+SINEAluAluYk2
CAediting_1168296chr17_18729741_+SINEAluAluSg7
CAediting_1168297chr17_18730020_+SINEAluAluSx3
CAediting_1168298chr17_18730026_+SINEAluAluSx3
CAediting_1168299chr17_18730054_+SINEAluAluSx3
CAediting_1168300chr17_18730056_+SINEAluAluSx3
CAediting_1168301chr17_18730062_+SINEAluAluSx3
CAediting_1168302chr17_18730072_+SINEAluAluSx3
CAediting_1168303chr17_18730085_+SINEAluAluSx3
CAediting_1168304chr17_18730089_+SINEAluAluSx3
CAediting_1168305chr17_18730095_+SINEAluAluSx3
CAediting_1168306chr17_18730108_+SINEAluAluSx3
CAediting_1168307chr17_18735673_+SINEAluAluSg
CAediting_1168308chr17_18735707_+SINEAluAluSg
CAediting_1168309chr17_18735732_+SINEAluAluSg
CAediting_1168310chr17_18735751_+SINEAluAluSg
CAediting_1168311chr17_18735781_+SINEAluAluSg
CAediting_1168312chr17_18735793_+SINEAluAluSg
CAediting_1168313chr17_18735804_+SINEAluAluSg
CAediting_1168314chr17_18735818_+SINEAluAluSg
CAediting_1168315chr17_18735827_+SINEAluAluSg
CAediting_1168316chr17_18735833_+SINEAluAluSg
CAediting_1168317chr17_18735836_+SINEAluAluSg
CAediting_1168318chr17_18735862_+SINEAluAluSg
CAediting_1168319chr17_18735873_+SINEAluAluSg
CAediting_1168320chr17_18735875_+SINEAluAluSg
CAediting_1168321chr17_18735894_+SINEAluAluSg
CAediting_1168322chr17_18735898_+SINEAluAluSg
CAediting_1168323chr17_18735911_+SINEAluAluSg
CAediting_1168324chr17_18735912_+SINEAluAluSg
CAediting_1168325chr17_18735913_+SINEAluAluSg
CAediting_1168326chr17_18735925_+SINEAluAluSg
CAediting_1168327chr17_18735927_+SINEAluAluSg

Top

RNA A-to-I editing events in the alternative splicing sites for TRIM16L

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000108448.19.TRIM16L.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000108448.19.TRIM16L.

Top

Differntial gene expression between RNA A-to-I edited versus non-edited samples for TRIM16L

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
KIRC.CAediting_1168229.ENSG00000108448.TRIM16L.png
Soverview

Top

Protein coding region RNA A-to-I editings for TRIM16L

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


Top

The effects of the RNA editing to the miRNA binding sites for TRIM16L

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for TRIM16L

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

Top

Relation with ADAR for TRIM16L

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)
BRCACAediting_1168229chr17_18720108_+0.002029114861026690.375912810745242....

Top

Relation with cancer stages for TRIM16L

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

Top

Relation with survival for TRIM16L

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

Top

RelatedDrugs for TRIM16L

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

Top

RelatedDiseases for TRIM16L

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource