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Editing gene: HGSNAT (CAeditome ID:138050)

Gene summary for HGSNAT

Gene summary

Gene information	Gene symbol	HGSNAT
	Gene ID	138050
	Gene name	heparan-alpha-glucosaminide N-acetyltransferase
	Synonyms	HGNAT\|MPS3C\|RP73\|TMEM76
	Cytomap	8p11.21-p11.1
	Type of gene	protein-coding
	Description	heparan-alpha-glucosaminide N-acetyltransferasetransmembrane protein 76
	Modification date	20210529
	UniProtAcc	Q68CP4
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
HGSNAT	GO:0016746	Heparan-alpha-glucosaminide N-acetyltransferase	19823584
HGSNAT	GO:0016746	Heparan-alpha-glucosaminide N-acetyltransferase	20650889
HGSNAT	GO:0007041	Heparan-alpha-glucosaminide N-acetyltransferase	20650889
HGSNAT	GO:0051259	Heparan-alpha-glucosaminide N-acetyltransferase	20650889
HGSNAT	GO:0005765	Heparan-alpha-glucosaminide N-acetyltransferase	19823584
HGSNAT	GO:0005765	Heparan-alpha-glucosaminide N-acetyltransferase	20650889

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RNA A-to-I events for HGSNAT

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000165102.13

RNA A-to-I editing events in Cancer.

CAediting_636349(43143753, +), CAediting_636350(43143820, +), CAediting_636351(43144055, +), CAediting_636352(43144063, +), CAediting_636353(43144095, +), CAediting_636354(43144129, +), CAediting_636355(43144133, +), CAediting_636356(43144134, +), CAediting_636357(43144142, +), CAediting_636358(43144143, +), CAediting_636359(43144144, +), CAediting_636360(43144161, +), CAediting_636361(43144210, +), CAediting_636362(43144214, +), CAediting_636363(43144227, +), CAediting_636364(43144234, +), CAediting_636365(43145481, +), CAediting_636366(43145542, +), CAediting_636367(43145644, +), CAediting_636368(43145738, +), CAediting_636369(43147565, +), CAediting_636370(43147575, +), CAediting_636371(43147576, +), CAediting_636372(43147578, +), CAediting_636373(43147579, +), CAediting_636374(43147584, +), CAediting_636375(43147635, +), CAediting_636376(43147636, +), CAediting_636377(43147785, +), CAediting_636378(43147788, +), CAediting_636379(43148057, +), CAediting_636380(43148510, +), CAediting_636381(43148538, +), CAediting_636382(43148611, +), CAediting_636383(43148612, +), CAediting_636384(43148656, +), CAediting_636385(43148659, +), CAediting_636386(43148669, +), CAediting_636387(43148670, +), CAediting_636388(43148679, +), CAediting_636389(43148686, +), CAediting_636390(43148861, +), CAediting_636391(43148893, +), CAediting_636392(43148906, +), CAediting_636393(43148915, +), CAediting_636394(43148920, +), CAediting_636395(43148929, +), CAediting_636396(43148939, +), CAediting_636397(43148940, +), CAediting_636398(43148995, +), CAediting_636399(43148996, +), CAediting_636400(43149001, +), CAediting_636401(43149005, +), CAediting_636402(43149035, +), CAediting_636403(43149061, +), CAediting_636404(43149066, +), CAediting_636405(43149068, +), CAediting_636406(43149975, +), CAediting_636407(43149976, +), CAediting_636408(43150086, +), CAediting_636409(43150205, +), CAediting_636410(43150357, +), CAediting_636411(43150656, +), CAediting_636412(43152039, +), CAediting_636413(43152170, +), CAediting_636414(43152173, +), CAediting_636415(43152176, +), CAediting_636416(43152180, +), CAediting_636417(43152206, +), CAediting_636418(43152211, +), CAediting_636419(43152212, +), CAediting_636420(43152504, +), CAediting_636421(43152550, +), CAediting_636422(43152551, +), CAediting_636423(43152577, +), CAediting_636424(43152580, +), CAediting_636425(43152587, +), CAediting_636426(43152642, +), CAediting_636427(43152646, +), CAediting_636428(43152647, +), CAediting_636429(43152666, +), CAediting_636430(43152692, +), CAediting_636431(43152725, +), CAediting_636432(43153428, +), CAediting_636433(43153476, +), CAediting_636434(43157498, +), CAediting_636435(43157631, +), CAediting_636436(43157641, +), CAediting_636437(43157663, +), CAediting_636438(43157667, +), CAediting_636439(43157680, +), CAediting_636440(43157690, +), CAediting_636441(43158173, +), CAediting_636442(43158309, +), CAediting_636443(43162681, +), CAediting_636444(43162945, +), CAediting_636445(43163778, +), CAediting_636446(43164438, +), CAediting_636447(43164518, +), CAediting_636448(43164710, +), CAediting_636449(43164825, +), CAediting_636450(43164870, +), CAediting_636451(43164891, +), CAediting_636452(43164892, +), CAediting_636453(43165399, +), CAediting_636454(43165403, +), CAediting_636455(43165405, +), CAediting_636456(43165406, +), CAediting_636457(43165411, +), CAediting_636458(43165417, +), CAediting_636459(43165420, +), CAediting_636460(43165430, +), CAediting_636461(43165433, +), CAediting_636462(43165458, +), CAediting_636463(43165459, +), CAediting_636464(43165461, +), CAediting_636465(43165465, +), CAediting_636466(43165665, +), CAediting_636467(43165675, +), CAediting_636468(43165723, +), CAediting_636469(43165759, +), CAediting_636470(43165760, +), CAediting_636471(43165789, +), CAediting_636472(43165815, +), CAediting_636473(43165821, +), CAediting_636474(43165842, +), CAediting_636475(43165848, +), CAediting_636476(43165856, +), CAediting_636477(43165857, +), CAediting_636478(43165868, +), CAediting_636479(43165870, +), CAediting_636480(43165871, +), CAediting_636481(43165877, +), CAediting_636482(43165881, +), CAediting_636483(43165886, +), CAediting_636484(43165911, +), CAediting_636485(43168031, +), CAediting_636486(43168054, +), CAediting_636487(43169938, +), CAediting_636488(43173124, +), CAediting_636489(43173549, +), CAediting_636490(43173960, +), CAediting_636491(43173961, +), CAediting_636492(43174032, +), CAediting_636493(43174040, +), CAediting_636494(43174051, +), CAediting_636495(43174054, +), CAediting_636496(43174070, +), CAediting_636497(43174080, +), CAediting_636498(43174086, +), CAediting_636499(43174096, +), CAediting_636500(43174097, +), CAediting_636501(43174106, +), CAediting_636502(43174123, +), CAediting_636503(43174128, +), CAediting_636504(43174132, +), CAediting_636505(43174138, +), CAediting_636506(43174142, +), CAediting_636507(43174162, +), CAediting_636508(43174172, +), CAediting_636509(43175604, +), CAediting_636510(43175630, +), CAediting_636511(43175640, +), CAediting_636512(43175670, +), CAediting_636513(43175683, +), CAediting_636514(43175692, +), CAediting_636515(43175695, +), CAediting_636516(43175705, +), CAediting_636517(43175715, +), CAediting_636518(43175747, +), CAediting_636519(43175764, +), CAediting_636520(43175767, +), CAediting_636521(43175829, +), CAediting_636522(43177267, +), CAediting_636523(43177273, +), CAediting_636524(43177287, +), CAediting_636525(43177295, +), CAediting_636526(43177296, +), CAediting_636527(43177301, +), CAediting_636528(43177313, +), CAediting_636529(43177335, +), CAediting_636530(43177366, +), CAediting_636531(43177372, +), CAediting_636532(43177373, +), CAediting_636533(43177374, +), CAediting_636534(43177385, +), CAediting_636535(43177388, +), CAediting_636536(43177389, +), CAediting_636537(43177411, +), CAediting_636538(43177443, +), CAediting_636539(43177447, +), CAediting_636540(43177451, +), CAediting_636541(43177483, +), CAediting_636542(43177503, +), CAediting_636543(43177510, +), CAediting_636544(43177537, +), CAediting_636545(43177538, +), CAediting_636546(43177546, +), CAediting_636547(43177558, +), CAediting_636548(43182400, +), CAediting_636549(43182583, +), CAediting_636550(43194304, +), CAediting_636551(43194319, +), CAediting_636552(43194339, +), CAediting_636553(43194386, +), CAediting_636554(43194619, +), CAediting_636555(43200308, +),

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RNA editing positional annotations for HGSNAT using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_636349	chr8_43143753_+	intronic
CAediting_636350	chr8_43143820_+	intronic
CAediting_636351	chr8_43144055_+	intronic
CAediting_636352	chr8_43144063_+	intronic
CAediting_636353	chr8_43144095_+	intronic
CAediting_636354	chr8_43144129_+	intronic
CAediting_636355	chr8_43144133_+	intronic
CAediting_636356	chr8_43144134_+	intronic
CAediting_636357	chr8_43144142_+	intronic
CAediting_636358	chr8_43144143_+	intronic
CAediting_636359	chr8_43144144_+	intronic
CAediting_636360	chr8_43144161_+	intronic
CAediting_636361	chr8_43144210_+	intronic
CAediting_636362	chr8_43144214_+	intronic
CAediting_636363	chr8_43144227_+	intronic
CAediting_636364	chr8_43144234_+	intronic
CAediting_636365	chr8_43145481_+	intronic
CAediting_636366	chr8_43145542_+	intronic
CAediting_636367	chr8_43145644_+	intronic
CAediting_636368	chr8_43145738_+	intronic
CAediting_636369	chr8_43147565_+	intronic
CAediting_636370	chr8_43147575_+	intronic
CAediting_636371	chr8_43147576_+	intronic
CAediting_636372	chr8_43147578_+	intronic
CAediting_636373	chr8_43147579_+	intronic
CAediting_636374	chr8_43147584_+	intronic
CAediting_636375	chr8_43147635_+	intronic
CAediting_636376	chr8_43147636_+	intronic
CAediting_636377	chr8_43147785_+	intronic
CAediting_636378	chr8_43147788_+	intronic
CAediting_636379	chr8_43148057_+	intronic
CAediting_636380	chr8_43148510_+	intronic
CAediting_636381	chr8_43148538_+	intronic
CAediting_636382	chr8_43148611_+	intronic
CAediting_636383	chr8_43148612_+	intronic
CAediting_636384	chr8_43148656_+	intronic
CAediting_636385	chr8_43148659_+	intronic
CAediting_636386	chr8_43148669_+	intronic
CAediting_636387	chr8_43148670_+	intronic
CAediting_636388	chr8_43148679_+	intronic
CAediting_636389	chr8_43148686_+	intronic
CAediting_636390	chr8_43148861_+	intronic
CAediting_636391	chr8_43148893_+	intronic
CAediting_636392	chr8_43148906_+	intronic
CAediting_636393	chr8_43148915_+	intronic
CAediting_636394	chr8_43148920_+	intronic
CAediting_636395	chr8_43148929_+	intronic
CAediting_636396	chr8_43148939_+	intronic
CAediting_636397	chr8_43148940_+	intronic
CAediting_636398	chr8_43148995_+	intronic
CAediting_636399	chr8_43148996_+	intronic
CAediting_636400	chr8_43149001_+	intronic
CAediting_636401	chr8_43149005_+	intronic
CAediting_636402	chr8_43149035_+	intronic
CAediting_636403	chr8_43149061_+	intronic
CAediting_636404	chr8_43149066_+	intronic
CAediting_636405	chr8_43149068_+	intronic
CAediting_636406	chr8_43149975_+	intronic
CAediting_636407	chr8_43149976_+	intronic
CAediting_636408	chr8_43150086_+	intronic
CAediting_636409	chr8_43150205_+	intronic
CAediting_636410	chr8_43150357_+	intronic
CAediting_636411	chr8_43150656_+	intronic
CAediting_636412	chr8_43152039_+	intronic
CAediting_636413	chr8_43152170_+	intronic
CAediting_636414	chr8_43152173_+	intronic
CAediting_636415	chr8_43152176_+	intronic
CAediting_636416	chr8_43152180_+	intronic
CAediting_636417	chr8_43152206_+	intronic
CAediting_636418	chr8_43152211_+	intronic
CAediting_636419	chr8_43152212_+	intronic
CAediting_636420	chr8_43152504_+	intronic
CAediting_636421	chr8_43152550_+	intronic
CAediting_636422	chr8_43152551_+	intronic
CAediting_636423	chr8_43152577_+	intronic
CAediting_636424	chr8_43152580_+	intronic
CAediting_636425	chr8_43152587_+	intronic
CAediting_636426	chr8_43152642_+	intronic
CAediting_636427	chr8_43152646_+	intronic
CAediting_636428	chr8_43152647_+	intronic
CAediting_636429	chr8_43152666_+	intronic
CAediting_636430	chr8_43152692_+	intronic
CAediting_636431	chr8_43152725_+	intronic
CAediting_636432	chr8_43153428_+	intronic
CAediting_636433	chr8_43153476_+	intronic
CAediting_636434	chr8_43157498_+	intronic
CAediting_636435	chr8_43157631_+	intronic
CAediting_636436	chr8_43157641_+	intronic
CAediting_636437	chr8_43157663_+	intronic
CAediting_636438	chr8_43157667_+	intronic
CAediting_636439	chr8_43157680_+	intronic
CAediting_636440	chr8_43157690_+	intronic
CAediting_636441	chr8_43158173_+	intronic
CAediting_636442	chr8_43158309_+	intronic
CAediting_636443	chr8_43162681_+	intronic
CAediting_636444	chr8_43162945_+	intronic
CAediting_636445	chr8_43163778_+	intronic
CAediting_636446	chr8_43164438_+	intronic
CAediting_636447	chr8_43164518_+	intronic
CAediting_636448	chr8_43164710_+	intronic
CAediting_636449	chr8_43164825_+	intronic
CAediting_636450	chr8_43164870_+	intronic
CAediting_636451	chr8_43164891_+	intronic
CAediting_636452	chr8_43164892_+	intronic
CAediting_636453	chr8_43165399_+	intronic
CAediting_636454	chr8_43165403_+	intronic
CAediting_636455	chr8_43165405_+	intronic
CAediting_636456	chr8_43165406_+	intronic
CAediting_636457	chr8_43165411_+	intronic
CAediting_636458	chr8_43165417_+	intronic
CAediting_636459	chr8_43165420_+	intronic
CAediting_636460	chr8_43165430_+	intronic
CAediting_636461	chr8_43165433_+	intronic
CAediting_636462	chr8_43165458_+	intronic
CAediting_636463	chr8_43165459_+	intronic
CAediting_636464	chr8_43165461_+	intronic
CAediting_636465	chr8_43165465_+	intronic
CAediting_636466	chr8_43165665_+	intronic
CAediting_636467	chr8_43165675_+	intronic
CAediting_636468	chr8_43165723_+	intronic
CAediting_636469	chr8_43165759_+	intronic
CAediting_636470	chr8_43165760_+	intronic
CAediting_636471	chr8_43165789_+	intronic
CAediting_636472	chr8_43165815_+	intronic
CAediting_636473	chr8_43165821_+	intronic
CAediting_636474	chr8_43165842_+	intronic
CAediting_636475	chr8_43165848_+	intronic
CAediting_636476	chr8_43165856_+	intronic
CAediting_636477	chr8_43165857_+	intronic
CAediting_636478	chr8_43165868_+	intronic
CAediting_636479	chr8_43165870_+	intronic
CAediting_636480	chr8_43165871_+	intronic
CAediting_636481	chr8_43165877_+	intronic
CAediting_636482	chr8_43165881_+	intronic
CAediting_636483	chr8_43165886_+	intronic
CAediting_636484	chr8_43165911_+	intronic
CAediting_636485	chr8_43168031_+	exonic
CAediting_636486	chr8_43168054_+	UTR3
CAediting_636487	chr8_43169938_+	intronic
CAediting_636488	chr8_43173124_+	intronic
CAediting_636489	chr8_43173549_+	intronic
CAediting_636490	chr8_43173960_+	UTR3
CAediting_636491	chr8_43173961_+	UTR3
CAediting_636492	chr8_43174032_+	UTR3
CAediting_636493	chr8_43174040_+	UTR3
CAediting_636494	chr8_43174051_+	UTR3
CAediting_636495	chr8_43174054_+	UTR3
CAediting_636496	chr8_43174070_+	UTR3
CAediting_636497	chr8_43174080_+	UTR3
CAediting_636498	chr8_43174086_+	UTR3
CAediting_636499	chr8_43174096_+	UTR3
CAediting_636500	chr8_43174097_+	UTR3
CAediting_636501	chr8_43174106_+	UTR3
CAediting_636502	chr8_43174123_+	UTR3
CAediting_636503	chr8_43174128_+	UTR3
CAediting_636504	chr8_43174132_+	UTR3
CAediting_636505	chr8_43174138_+	UTR3
CAediting_636506	chr8_43174142_+	UTR3
CAediting_636507	chr8_43174162_+	UTR3
CAediting_636508	chr8_43174172_+	UTR3
CAediting_636509	chr8_43175604_+	intronic
CAediting_636510	chr8_43175630_+	intronic
CAediting_636511	chr8_43175640_+	intronic
CAediting_636512	chr8_43175670_+	intronic
CAediting_636513	chr8_43175683_+	intronic
CAediting_636514	chr8_43175692_+	intronic
CAediting_636515	chr8_43175695_+	intronic
CAediting_636516	chr8_43175705_+	intronic
CAediting_636517	chr8_43175715_+	intronic
CAediting_636518	chr8_43175747_+	intronic
CAediting_636519	chr8_43175764_+	intronic
CAediting_636520	chr8_43175767_+	intronic
CAediting_636521	chr8_43175829_+	intronic
CAediting_636522	chr8_43177267_+	intronic
CAediting_636523	chr8_43177273_+	intronic
CAediting_636524	chr8_43177287_+	intronic
CAediting_636525	chr8_43177295_+	intronic
CAediting_636526	chr8_43177296_+	intronic
CAediting_636527	chr8_43177301_+	intronic
CAediting_636528	chr8_43177313_+	intronic
CAediting_636529	chr8_43177335_+	intronic
CAediting_636530	chr8_43177366_+	intronic
CAediting_636531	chr8_43177372_+	intronic
CAediting_636532	chr8_43177373_+	intronic
CAediting_636533	chr8_43177374_+	intronic
CAediting_636534	chr8_43177385_+	intronic
CAediting_636535	chr8_43177388_+	intronic
CAediting_636536	chr8_43177389_+	intronic
CAediting_636537	chr8_43177411_+	intronic
CAediting_636538	chr8_43177443_+	intronic
CAediting_636539	chr8_43177447_+	intronic
CAediting_636540	chr8_43177451_+	intronic
CAediting_636541	chr8_43177483_+	intronic
CAediting_636542	chr8_43177503_+	intronic
CAediting_636543	chr8_43177510_+	intronic
CAediting_636544	chr8_43177537_+	intronic
CAediting_636545	chr8_43177538_+	intronic
CAediting_636546	chr8_43177546_+	intronic
CAediting_636547	chr8_43177558_+	intronic
CAediting_636548	chr8_43182400_+	exonic
CAediting_636549	chr8_43182583_+	ncRNA_intronic
CAediting_636550	chr8_43194304_+	intronic
CAediting_636551	chr8_43194319_+	intronic
CAediting_636552	chr8_43194339_+	intronic
CAediting_636553	chr8_43194386_+	intronic
CAediting_636554	chr8_43194619_+	intronic
CAediting_636555	chr8_43200308_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_636349	chr8_43143753_+	SINE	Alu	AluY
CAediting_636350	chr8_43143820_+	SINE	Alu	AluY
CAediting_636351	chr8_43144055_+	SINE	Alu	AluJb
CAediting_636352	chr8_43144063_+	SINE	Alu	AluJb
CAediting_636353	chr8_43144095_+	SINE	Alu	AluJb
CAediting_636354	chr8_43144129_+	SINE	Alu	AluJb
CAediting_636355	chr8_43144133_+	SINE	Alu	AluJb
CAediting_636356	chr8_43144134_+	SINE	Alu	AluJb
CAediting_636357	chr8_43144142_+	SINE	Alu	AluJb
CAediting_636358	chr8_43144143_+	SINE	Alu	AluJb
CAediting_636359	chr8_43144144_+	SINE	Alu	AluJb
CAediting_636360	chr8_43144161_+	SINE	Alu	AluJb
CAediting_636361	chr8_43144210_+	SINE	Alu	AluJb
CAediting_636362	chr8_43144214_+	SINE	Alu	AluJb
CAediting_636363	chr8_43144227_+	SINE	Alu	AluJb
CAediting_636364	chr8_43144234_+	SINE	Alu	AluJb
CAediting_636365	chr8_43145481_+	SINE	Alu	AluSc
CAediting_636366	chr8_43145542_+	SINE	Alu	AluSc
CAediting_636367	chr8_43145644_+	SINE	Alu	AluSc
CAediting_636368	chr8_43145738_+	SINE	Alu	AluSc
CAediting_636369	chr8_43147565_+	LINE	L1	L1PA16
CAediting_636370	chr8_43147575_+	LINE	L1	L1PA16
CAediting_636371	chr8_43147576_+	LINE	L1	L1PA16
CAediting_636372	chr8_43147578_+	LINE	L1	L1PA16
CAediting_636373	chr8_43147579_+	LINE	L1	L1PA16
CAediting_636374	chr8_43147584_+	LINE	L1	L1PA16
CAediting_636375	chr8_43147635_+	LINE	L1	L1PA16
CAediting_636376	chr8_43147636_+	LINE	L1	L1PA16
CAediting_636377	chr8_43147785_+	LINE	L1	L1PA16
CAediting_636378	chr8_43147788_+	LINE	L1	L1PA16
CAediting_636379	chr8_43148057_+	SINE	Alu	AluSp
CAediting_636380	chr8_43148510_+	SINE	Alu	AluSq2
CAediting_636381	chr8_43148538_+	SINE	Alu	AluSq2
CAediting_636382	chr8_43148611_+	SINE	Alu	AluSq2
CAediting_636383	chr8_43148612_+	SINE	Alu	AluSq2
CAediting_636384	chr8_43148656_+	SINE	Alu	AluSq2
CAediting_636385	chr8_43148659_+	SINE	Alu	AluSq2
CAediting_636386	chr8_43148669_+	SINE	Alu	AluSq2
CAediting_636387	chr8_43148670_+	SINE	Alu	AluSq2
CAediting_636388	chr8_43148679_+	SINE	Alu	AluSq2
CAediting_636389	chr8_43148686_+	SINE	Alu	AluSq2
CAediting_636390	chr8_43148861_+	SINE	Alu	AluSg
CAediting_636391	chr8_43148893_+	SINE	Alu	AluSg
CAediting_636392	chr8_43148906_+	SINE	Alu	AluSg
CAediting_636393	chr8_43148915_+	SINE	Alu	AluSg
CAediting_636394	chr8_43148920_+	SINE	Alu	AluSg
CAediting_636395	chr8_43148929_+	SINE	Alu	AluSg
CAediting_636396	chr8_43148939_+	SINE	Alu	AluSg
CAediting_636397	chr8_43148940_+	SINE	Alu	AluSg
CAediting_636398	chr8_43148995_+	SINE	Alu	AluSg
CAediting_636399	chr8_43148996_+	SINE	Alu	AluSg
CAediting_636400	chr8_43149001_+	SINE	Alu	AluSg
CAediting_636401	chr8_43149005_+	SINE	Alu	AluSg
CAediting_636402	chr8_43149035_+	SINE	Alu	AluSg
CAediting_636403	chr8_43149061_+	SINE	Alu	AluSg
CAediting_636404	chr8_43149066_+	SINE	Alu	AluSg
CAediting_636405	chr8_43149068_+	SINE	Alu	AluSg
CAediting_636406	chr8_43149975_+	SINE	Alu	AluSg4
CAediting_636407	chr8_43149976_+	SINE	Alu	AluSg4
CAediting_636408	chr8_43150086_+	SINE	Alu	AluSg4
CAediting_636409	chr8_43150205_+	SINE	Alu	AluSg4
CAediting_636410	chr8_43150357_+	SINE	Alu	FLAM_C
CAediting_636411	chr8_43150656_+	SINE	Alu	AluY
CAediting_636412	chr8_43152039_+	SINE	Alu	AluSx1
CAediting_636413	chr8_43152170_+	SINE	Alu	AluSx1
CAediting_636414	chr8_43152173_+	SINE	Alu	AluSx1
CAediting_636415	chr8_43152176_+	SINE	Alu	AluSx1
CAediting_636416	chr8_43152180_+	SINE	Alu	AluSx1
CAediting_636417	chr8_43152206_+	SINE	Alu	AluSx1
CAediting_636418	chr8_43152211_+	SINE	Alu	AluSx1
CAediting_636419	chr8_43152212_+	SINE	Alu	AluSx1
CAediting_636420	chr8_43152504_+	SINE	Alu	AluJr4
CAediting_636421	chr8_43152550_+	SINE	Alu	AluJr4
CAediting_636422	chr8_43152551_+	SINE	Alu	AluJr4
CAediting_636423	chr8_43152577_+	SINE	Alu	AluJr4
CAediting_636424	chr8_43152580_+	SINE	Alu	AluJr4
CAediting_636425	chr8_43152587_+	SINE	Alu	AluJr4
CAediting_636426	chr8_43152642_+	SINE	Alu	AluJr4
CAediting_636427	chr8_43152646_+	SINE	Alu	AluJr4
CAediting_636428	chr8_43152647_+	SINE	Alu	AluJr4
CAediting_636429	chr8_43152666_+	SINE	Alu	AluJr4
CAediting_636430	chr8_43152692_+	SINE	Alu	AluJr4
CAediting_636431	chr8_43152725_+	SINE	Alu	AluJr4
CAediting_636432	chr8_43153428_+	SINE	Alu	AluSz
CAediting_636433	chr8_43153476_+	SINE	Alu	AluSz
CAediting_636434	chr8_43157498_+	SINE	Alu	AluSx3
CAediting_636435	chr8_43157631_+	SINE	Alu	AluSx3
CAediting_636436	chr8_43157641_+	SINE	Alu	AluSx3
CAediting_636437	chr8_43157663_+	SINE	Alu	AluSx3
CAediting_636438	chr8_43157667_+	SINE	Alu	AluSx3
CAediting_636439	chr8_43157680_+	SINE	Alu	AluSx3
CAediting_636440	chr8_43157690_+	SINE	Alu	AluSx3
CAediting_636441	chr8_43158173_+	SINE	Alu	AluSc5
CAediting_636442	chr8_43158309_+	SINE	Alu	AluSc5
CAediting_636443	chr8_43162681_+	SINE	Alu	AluJo
CAediting_636444	chr8_43162945_+	SINE	Alu	AluSx1
CAediting_636445	chr8_43163778_+	SINE	Alu	AluSg7
CAediting_636446	chr8_43164438_+	SINE	Alu	AluJb
CAediting_636447	chr8_43164518_+	SINE	Alu	AluSz
CAediting_636448	chr8_43164710_+	SINE	Alu	AluSz
CAediting_636449	chr8_43164825_+	DNA	TcMar-Tigger	Tigger1
CAediting_636450	chr8_43164870_+	DNA	TcMar-Tigger	Tigger1
CAediting_636451	chr8_43164891_+	DNA	TcMar-Tigger	Tigger1
CAediting_636452	chr8_43164892_+	DNA	TcMar-Tigger	Tigger1
CAediting_636453	chr8_43165399_+	DNA	TcMar-Tigger	Tigger1
CAediting_636454	chr8_43165403_+	DNA	TcMar-Tigger	Tigger1
CAediting_636455	chr8_43165405_+	DNA	TcMar-Tigger	Tigger1
CAediting_636456	chr8_43165406_+	DNA	TcMar-Tigger	Tigger1
CAediting_636457	chr8_43165411_+	DNA	TcMar-Tigger	Tigger1
CAediting_636458	chr8_43165417_+	DNA	TcMar-Tigger	Tigger1
CAediting_636459	chr8_43165420_+	DNA	TcMar-Tigger	Tigger1
CAediting_636460	chr8_43165430_+	DNA	TcMar-Tigger	Tigger1
CAediting_636461	chr8_43165433_+	DNA	TcMar-Tigger	Tigger1
CAediting_636462	chr8_43165458_+	DNA	TcMar-Tigger	Tigger1
CAediting_636463	chr8_43165459_+	DNA	TcMar-Tigger	Tigger1
CAediting_636464	chr8_43165461_+	DNA	TcMar-Tigger	Tigger1
CAediting_636465	chr8_43165465_+	DNA	TcMar-Tigger	Tigger1
CAediting_636466	chr8_43165665_+	SINE	Alu	AluSz6
CAediting_636467	chr8_43165675_+	SINE	Alu	AluSz6
CAediting_636468	chr8_43165723_+	SINE	Alu	AluSz6
CAediting_636469	chr8_43165759_+	SINE	Alu	AluSz6
CAediting_636470	chr8_43165760_+	SINE	Alu	AluSz6
CAediting_636471	chr8_43165789_+	SINE	Alu	AluSz6
CAediting_636472	chr8_43165815_+	SINE	Alu	AluSz6
CAediting_636473	chr8_43165821_+	SINE	Alu	AluSz6
CAediting_636474	chr8_43165842_+	SINE	Alu	AluSz6
CAediting_636475	chr8_43165848_+	SINE	Alu	AluSz6
CAediting_636476	chr8_43165856_+	SINE	Alu	AluSz6
CAediting_636477	chr8_43165857_+	SINE	Alu	AluSz6
CAediting_636478	chr8_43165868_+	SINE	Alu	AluSz6
CAediting_636479	chr8_43165870_+	SINE	Alu	AluSz6
CAediting_636480	chr8_43165871_+	SINE	Alu	AluSz6
CAediting_636481	chr8_43165877_+	SINE	Alu	AluSz6
CAediting_636482	chr8_43165881_+	SINE	Alu	AluSz6
CAediting_636483	chr8_43165886_+	SINE	Alu	AluSz6
CAediting_636484	chr8_43165911_+	SINE	Alu	AluSz6
CAediting_636485	chr8_43168031_+	SINE	Alu	AluY
CAediting_636486	chr8_43168054_+	SINE	Alu	AluY
CAediting_636487	chr8_43169938_+	SINE	Alu	AluJb
CAediting_636488	chr8_43173124_+	SINE	Alu	AluJo
CAediting_636489	chr8_43173549_+	SINE	Alu	AluSq2
CAediting_636490	chr8_43173960_+	SINE	Alu	AluSx
CAediting_636491	chr8_43173961_+	SINE	Alu	AluSx
CAediting_636492	chr8_43174032_+	SINE	Alu	AluSx
CAediting_636493	chr8_43174040_+	SINE	Alu	AluSx
CAediting_636494	chr8_43174051_+	SINE	Alu	AluSx
CAediting_636495	chr8_43174054_+	SINE	Alu	AluSx
CAediting_636496	chr8_43174070_+	SINE	Alu	AluSx
CAediting_636497	chr8_43174080_+	SINE	Alu	AluSx
CAediting_636498	chr8_43174086_+	SINE	Alu	AluSx
CAediting_636499	chr8_43174096_+	SINE	Alu	AluSx
CAediting_636500	chr8_43174097_+	SINE	Alu	AluSx
CAediting_636501	chr8_43174106_+	SINE	Alu	AluSx
CAediting_636502	chr8_43174123_+	SINE	Alu	AluSx
CAediting_636503	chr8_43174128_+	SINE	Alu	AluSx
CAediting_636504	chr8_43174132_+	SINE	Alu	AluSx
CAediting_636505	chr8_43174138_+	SINE	Alu	AluSx
CAediting_636506	chr8_43174142_+	SINE	Alu	AluSx
CAediting_636507	chr8_43174162_+	SINE	Alu	AluSx
CAediting_636508	chr8_43174172_+	SINE	Alu	AluSx
CAediting_636509	chr8_43175604_+	SINE	Alu	AluSx
CAediting_636510	chr8_43175630_+	SINE	Alu	AluSx
CAediting_636511	chr8_43175640_+	SINE	Alu	AluSx
CAediting_636512	chr8_43175670_+	SINE	Alu	AluSx
CAediting_636513	chr8_43175683_+	SINE	Alu	AluSx
CAediting_636514	chr8_43175692_+	SINE	Alu	AluSx
CAediting_636515	chr8_43175695_+	SINE	Alu	AluSx
CAediting_636516	chr8_43175705_+	SINE	Alu	AluSx
CAediting_636517	chr8_43175715_+	SINE	Alu	AluSx
CAediting_636518	chr8_43175747_+	SINE	Alu	AluSx
CAediting_636519	chr8_43175764_+	SINE	Alu	AluSx
CAediting_636520	chr8_43175767_+	SINE	Alu	AluSx
CAediting_636521	chr8_43175829_+	SINE	Alu	AluSx
CAediting_636523	chr8_43177273_+	SINE	Alu	AluY
CAediting_636524	chr8_43177287_+	SINE	Alu	AluY
CAediting_636525	chr8_43177295_+	SINE	Alu	AluY
CAediting_636526	chr8_43177296_+	SINE	Alu	AluY
CAediting_636527	chr8_43177301_+	SINE	Alu	AluY
CAediting_636528	chr8_43177313_+	SINE	Alu	AluY
CAediting_636529	chr8_43177335_+	SINE	Alu	AluY
CAediting_636530	chr8_43177366_+	SINE	Alu	AluY
CAediting_636531	chr8_43177372_+	SINE	Alu	AluY
CAediting_636532	chr8_43177373_+	SINE	Alu	AluY
CAediting_636533	chr8_43177374_+	SINE	Alu	AluY
CAediting_636534	chr8_43177385_+	SINE	Alu	AluY
CAediting_636535	chr8_43177388_+	SINE	Alu	AluY
CAediting_636536	chr8_43177389_+	SINE	Alu	AluY
CAediting_636537	chr8_43177411_+	SINE	Alu	AluY
CAediting_636538	chr8_43177443_+	SINE	Alu	AluY
CAediting_636539	chr8_43177447_+	SINE	Alu	AluY
CAediting_636540	chr8_43177451_+	SINE	Alu	AluY
CAediting_636541	chr8_43177483_+	SINE	Alu	AluY
CAediting_636542	chr8_43177503_+	SINE	Alu	AluY
CAediting_636543	chr8_43177510_+	SINE	Alu	AluY
CAediting_636544	chr8_43177537_+	SINE	Alu	AluY
CAediting_636545	chr8_43177538_+	SINE	Alu	AluY
CAediting_636546	chr8_43177546_+	SINE	Alu	AluY
CAediting_636547	chr8_43177558_+	SINE	Alu	AluY
CAediting_636548	chr8_43182400_+	SINE	Alu	AluJr
CAediting_636549	chr8_43182583_+	SINE	Alu	AluJb
CAediting_636550	chr8_43194304_+	SINE	Alu	AluJo
CAediting_636551	chr8_43194319_+	SINE	Alu	AluJo
CAediting_636552	chr8_43194339_+	SINE	Alu	AluJo
CAediting_636553	chr8_43194386_+	SINE	Alu	AluJo
CAediting_636554	chr8_43194619_+	LTR	ERVL-MaLR	MLT1A1
CAediting_636555	chr8_43200308_+	SINE	MIR	MIR3

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RNA A-to-I editing events in the alternative splicing sites for HGSNAT

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000165102.13.HGSNAT.

Correlation between RNA A-to-I editing and PSI for ENSG00000165102.13.HGSNAT.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for HGSNAT

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for HGSNAT

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for HGSNAT

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_636490	chr8_43173960_+	ENSG00000165102.13	ENST00000520704	hsa-miR-513a-5p	43173954	43173960	7mer-m8	43173944	43173961	144.00	-16.68
CAediting_636490	chr8_43173960_+	ENSG00000165102.13	ENST00000520704	hsa-miR-513a-5p	43173954	43173960	7mer-m8	43173944	43173961	144.00	-16.68
CAediting_636492	chr8_43174032_+	ENSG00000165102.13	ENST00000520704	hsa-miR-1306-3p	43174025	43174031	7mer-m8	43174015	43174032	152.00	-23.71
CAediting_636493	chr8_43174040_+	ENSG00000165102.13	ENST00000520704	hsa-miR-412-3p	43174033	43174039	7mer-m8	43174018	43174040	153.00	-17.30
CAediting_636493	chr8_43174040_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6754-3p	43174033	43174039	7mer-m8	43174020	43174040	144.00	-15.76
CAediting_636494	chr8_43174051_+	ENSG00000165102.13	ENST00000520704	hsa-miR-2467-3p	43174046	43174051	6mer	43174031	43174052	149.00	-26.34
CAediting_636494	chr8_43174051_+	ENSG00000165102.13	ENST00000520704	hsa-miR-374b-3p	43174048	43174055	8mer-1a	43174033	43174055	151.00	-11.79
CAediting_636495	chr8_43174054_+	ENSG00000165102.13	ENST00000520704	hsa-miR-222-5p	43174048	43174055	8mer-1a	43174032	43174055	146.00	-15.15
CAediting_636495	chr8_43174054_+	ENSG00000165102.13	ENST00000520704	hsa-miR-30a-3p	43174050	43174057	8mer-1a	43174033	43174057	148.00	-13.12
CAediting_636495	chr8_43174054_+	ENSG00000165102.13	ENST00000520704	hsa-miR-30d-3p	43174050	43174057	8mer-1a	43174032	43174057	147.00	-13.14
CAediting_636495	chr8_43174054_+	ENSG00000165102.13	ENST00000520704	hsa-miR-30e-3p	43174050	43174057	8mer-1a	43174031	43174057	148.00	-13.78
CAediting_636495	chr8_43174054_+	ENSG00000165102.13	ENST00000520704	hsa-miR-936	43174047	43174054	8mer-1a	43174032	43174054	159.00	-24.24
CAediting_636499	chr8_43174096_+	ENSG00000165102.13	ENST00000520704	hsa-miR-513a-5p	43174090	43174096	7mer-m8	43174080	43174097	160.00	-23.52
CAediting_636499	chr8_43174096_+	ENSG00000165102.13	ENST00000520704	hsa-miR-513a-5p	43174090	43174096	7mer-m8	43174080	43174097	160.00	-23.52
CAediting_636499	chr8_43174096_+	ENSG00000165102.13	ENST00000520704	hsa-miR-638	43174095	43174101	7mer-1a	43174077	43174101	161.00	-35.82
CAediting_636501	chr8_43174106_+	ENSG00000165102.13	ENST00000520704	hsa-miR-1207-3p	43174099	43174105	7mer-m8	43174089	43174106	140.00	-12.56
CAediting_636501	chr8_43174106_+	ENSG00000165102.13	ENST00000520704	hsa-miR-646	43174101	43174107	7mer-m8	43174090	43174108	145.00	-14.99
CAediting_636502	chr8_43174123_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4469	43174120	43174127	8mer-1a	43174106	43174127	160.00	-28.19
CAediting_636502	chr8_43174123_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4667-3p	43174118	43174125	8mer-1a	43174106	43174125	151.00	-26.38
CAediting_636502	chr8_43174123_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4685-3p	43174121	43174127	7mer-1a	43174106	43174127	140.00	-25.56
CAediting_636502	chr8_43174123_+	ENSG00000165102.13	ENST00000520704	hsa-miR-5193	43174117	43174123	7mer-m8	43174103	43174124	154.00	-27.52
CAediting_636502	chr8_43174123_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6867-3p	43174121	43174128	8mer-1a	43174108	43174128	167.00	-24.03
CAediting_636505	chr8_43174138_+	ENSG00000165102.13	ENST00000520704	hsa-miR-10400-3p	43174135	43174141	7mer-m8	43174121	43174142	140.00	-20.37
CAediting_636505	chr8_43174138_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4437	43174134	43174141	8mer-1a	43174121	43174141	146.00	-19.60
CAediting_636505	chr8_43174138_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4674	43174135	43174141	7mer-m8	43174122	43174142	147.00	-22.80
CAediting_636508	chr8_43174172_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4634	43174169	43174176	8mer-1a	43174158	43174176	142.00	-17.70
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000379644	hsa-miR-1249-3p	43200302	43200307	6mer	43200286	43200308	143.00	-29.63
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000379644	hsa-miR-7108-3p	43200303	43200309	7mer-m8	43200292	43200310	159.00	-37.95
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000521576	hsa-miR-1249-3p	43200302	43200307	6mer	43200286	43200308	143.00	-29.63
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000521576	hsa-miR-7108-3p	43200303	43200309	7mer-m8	43200292	43200310	159.00	-37.95
CAediting_636491	chr8_43173961_+	ENSG00000165102.13	ENST00000520704	hsa-miR-3117-3p	43173959	43173965	7mer-m8	43173946	43173966	142.00	-14.32
CAediting_636491	chr8_43173961_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4759	43173958	43173965	8mer-1a	43173945	43173965	149.00	-15.80
CAediting_636500	chr8_43174097_+	ENSG00000165102.13	ENST00000520704	hsa-miR-8052	43174095	43174101	7mer-1a	43174081	43174101	141.00	-25.19

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000379644	hsa-miR-18a-3p	43200302	43200308	7mer-m8	43200287	43200309	145	-18.8
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000379644	hsa-miR-1913	43200303	43200308	6mer	43200288	43200309	144	-30.86
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000379644	hsa-miR-6747-3p	43200304	43200309	6mer	43200291	43200310	149	-30.76
CAediting_636490	chr8_43173960_+	ENSG00000165102.13	ENST00000520704	hsa-miR-10399-5p	43173955	43173961	7mer-m8	43173941	43173962	144	-11.2
CAediting_636491	chr8_43173961_+	ENSG00000165102.13	ENST00000520704	hsa-miR-10399-5p	43173955	43173961	7mer-m8	43173941	43173962	144	-11.2
CAediting_636499	chr8_43174096_+	ENSG00000165102.13	ENST00000520704	hsa-miR-10399-5p	43174091	43174097	7mer-m8	43174077	43174098	148	-12.38
CAediting_636500	chr8_43174097_+	ENSG00000165102.13	ENST00000520704	hsa-miR-10399-5p	43174091	43174097	7mer-m8	43174077	43174098	148	-12.38
CAediting_636498	chr8_43174086_+	ENSG00000165102.13	ENST00000520704	hsa-miR-1227-3p	43174080	43174086	7mer-m8	43174070	43174087	142	-25.39
CAediting_636506	chr8_43174142_+	ENSG00000165102.13	ENST00000520704	hsa-miR-1343-3p	43174138	43174144	7mer-m8	43174122	43174145	143	-22.21
CAediting_636497	chr8_43174080_+	ENSG00000165102.13	ENST00000520704	hsa-miR-217-5p	43174076	43174081	6mer	43174062	43174082	145	-18.98
CAediting_636497	chr8_43174080_+	ENSG00000165102.13	ENST00000520704	hsa-miR-3130-3p	43174074	43174080	7mer-m8	43174063	43174081	143	-16.52
CAediting_636497	chr8_43174080_+	ENSG00000165102.13	ENST00000520704	hsa-miR-3130-3p	43174074	43174080	7mer-m8	43174063	43174081	143	-16.52
CAediting_636502	chr8_43174123_+	ENSG00000165102.13	ENST00000520704	hsa-miR-3667-3p	43174118	43174125	8mer-1a	43174101	43174125	148	-22.66
CAediting_636497	chr8_43174080_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4252	43174078	43174085	8mer-1a	43174066	43174085	154	-22.71
CAediting_636492	chr8_43174032_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4716-5p	43174028	43174034	7mer-m8	43174014	43174035	140	-11.3
CAediting_636496	chr8_43174070_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4735-5p	43174064	43174070	7mer-m8	43174050	43174071	140	-4.28
CAediting_636492	chr8_43174032_+	ENSG00000165102.13	ENST00000520704	hsa-miR-4781-3p	43174026	43174032	7mer-m8	43174015	43174033	144	-13.86
CAediting_636500	chr8_43174097_+	ENSG00000165102.13	ENST00000520704	hsa-miR-5089-5p	43174095	43174101	7mer-m8	43174083	43174102	146	-12.33
CAediting_636490	chr8_43173960_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6504-3p	43173955	43173961	7mer-m8	43173941	43173962	148	-14.35
CAediting_636491	chr8_43173961_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6504-3p	43173955	43173961	7mer-m8	43173941	43173962	148	-14.35
CAediting_636507	chr8_43174162_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6511b-3p	43174157	43174162	6mer	43174141	43174163	140	-27.62
CAediting_636507	chr8_43174162_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6511b-3p	43174157	43174162	6mer	43174141	43174163	140	-27.62
CAediting_636502	chr8_43174123_+	ENSG00000165102.13	ENST00000520704	hsa-miR-670-3p	43174116	43174122	7mer-m8	43174103	43174123	145	-15.14
CAediting_636506	chr8_43174142_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6742-3p	43174137	43174144	8mer-1a	43174125	43174144	145	-14.93
CAediting_636498	chr8_43174086_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6767-3p	43174083	43174089	7mer-m8	43174069	43174090	155	-21.35
CAediting_636506	chr8_43174142_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6783-3p	43174138	43174144	7mer-m8	43174125	43174145	146	-16.82
CAediting_636507	chr8_43174162_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6784-3p	43174157	43174162	6mer	43174141	43174163	143	-29.45
CAediting_636507	chr8_43174162_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6828-3p	43174160	43174166	7mer-m8	43174147	43174167	149	-20.08
CAediting_636494	chr8_43174051_+	ENSG00000165102.13	ENST00000520704	hsa-miR-6832-5p	43174045	43174051	7mer-m8	43174032	43174052	146	-15.8
CAediting_636490	chr8_43173960_+	ENSG00000165102.13	ENST00000520704	hsa-miR-7151-3p	43173953	43173960	8mer-1a	43173940	43173960	144	-16.51
CAediting_636499	chr8_43174096_+	ENSG00000165102.13	ENST00000520704	hsa-miR-7151-3p	43174089	43174096	8mer-1a	43174076	43174096	140	-13.27
CAediting_636507	chr8_43174162_+	ENSG00000165102.13	ENST00000520704	hsa-miR-767-3p	43174159	43174166	8mer-1a	43174141	43174166	148	-30.03
CAediting_636504	chr8_43174132_+	ENSG00000165102.13	ENST00000520704	hsa-miR-8062	43174127	43174133	7mer-m8	43174114	43174134	141	-7.96
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000521576	hsa-miR-18a-3p	43200302	43200308	7mer-m8	43200287	43200309	145	-18.8
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000521576	hsa-miR-1913	43200303	43200308	6mer	43200288	43200309	144	-30.86
CAediting_636555	chr8_43200308_+	ENSG00000165102.13	ENST00000521576	hsa-miR-6747-3p	43200304	43200309	6mer	43200291	43200310	149	-30.76

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_748296	chr10_51299626_+	ENSG00000165102.13	ENST00000379644	hsa-miR-605-3p	43200860	43200866	7mer-m8	43200846	43200867	140	-21.35
CAediting_393	chr1_1167164_+	ENSG00000165102.13	ENST00000379644	hsa-miR-200b-3p	43201642	43201648	7mer-m8	43201630	43201649	157	-14.42
CAediting_688080	chr9_63819626_+	ENSG00000165102.13	ENST00000379644	hsa-miR-4477b	43200957	43200964	8mer-1a	43200943	43200964	142	-8.3
CAediting_688080	chr9_63819626_+	ENSG00000165102.13	ENST00000379644	hsa-miR-4477b	43199706	43199713	8mer-1a	43199692	43199713	171	-20.92
CAediting_748296	chr10_51299626_+	ENSG00000165102.13	ENST00000520704	hsa-miR-605-3p	43173757	43173763	7mer-m8	43173742	43173764	143	-19.07
CAediting_688080	chr9_63819626_+	ENSG00000165102.13	ENST00000521576	hsa-miR-4477b	43199706	43199713	8mer-1a	43199692	43199713	171	-20.92
CAediting_1229413	chr17_67471544_+	ENSG00000165102.13	ENST00000379644	hsa-miR-548aa	43201749	43201755	7mer-m8	43201727	43201756	155	-17.65
CAediting_1229413	chr17_67471544_+	ENSG00000165102.13	ENST00000379644	hsa-miR-548aa	43202408	43202414	7mer-m8	43202395	43202415	151	-12.12
CAediting_1229415	chr17_67471547_+	ENSG00000165102.13	ENST00000379644	hsa-miR-548aa	43200993	43200999	7mer-m8	43200976	43201000	141	-10.23
CAediting_1160181	chr17_7017644_-	ENSG00000165102.13	ENST00000379644	hsa-miR-195-3p	43200630	43200635	6mer	43200613	43200636	141	-17.27
CAediting_1351755	chr19_40282625_-	ENSG00000165102.13	ENST00000379644	hsa-miR-641	43200929	43200936	8mer-1a	43200913	43200936	155	-17.38
CAediting_1351755	chr19_40282625_-	ENSG00000165102.13	ENST00000379644	hsa-miR-641	43201014	43201019	6mer	43200997	43201020	157	-20.93
CAediting_86358	chr1_109598906_+	ENSG00000165102.13	ENST00000379644	hsa-miR-197-5p	43200815	43200821	7mer-m8	43200803	43200822	157	-27.05
CAediting_86358	chr1_109598906_+	ENSG00000165102.13	ENST00000379644	hsa-miR-197-5p	43201044	43201050	7mer-m8	43201028	43201051	155	-33.77
CAediting_77128	chr1_85133844_+	ENSG00000165102.13	ENST00000379644	hsa-miR-4423-3p	43201884	43201890	7mer-m8	43201871	43201891	145	-18.39
CAediting_228905	chr2_188297554_+	ENSG00000165102.13	ENST00000379644	hsa-miR-561-3p	43200513	43200519	7mer-m8	43200499	43200520	144	-6.54
CAediting_604450	chr7_133034877_-	ENSG00000165102.13	ENST00000379644	hsa-miR-3654	43200328	43200334	7mer-m8	43200314	43200335	143	-19.86
CAediting_524911	chr7_5495852_-	ENSG00000165102.13	ENST00000379644	hsa-miR-589-3p	43201103	43201109	7mer-m8	43201087	43201110	161	-22.23
CAediting_573000	chr7_92204081_-	ENSG00000165102.13	ENST00000379644	hsa-miR-1285-5p	43200785	43200791	7mer-m8	43200772	43200792	141	-12.56
CAediting_1229414	chr17_67471546_+	ENSG00000165102.13	ENST00000517319	hsa-miR-548aa	43161459	43161465	7mer-m8	43161444	43161466	147	-10.93
CAediting_1229414	chr17_67471546_+	ENSG00000165102.13	ENST00000520704	hsa-miR-548aa	43172326	43172332	7mer-m8	43172309	43172333	146	-11.61
CAediting_228905	chr2_188297554_+	ENSG00000165102.13	ENST00000520704	hsa-miR-561-3p	43174037	43174043	7mer-m8	43174023	43174044	143	-14.95
CAediting_228905	chr2_188297554_+	ENSG00000165102.13	ENST00000521576	hsa-miR-561-3p	43200513	43200519	7mer-m8	43200499	43200520	144	-6.54
CAediting_604450	chr7_133034877_-	ENSG00000165102.13	ENST00000521576	hsa-miR-3654	43200328	43200334	7mer-m8	43200314	43200335	143	-19.86
CAediting_468389	chr6_31355314_-	ENSG00000165102.13	ENST00000379644	hsa-miR-6891-5p	43202228	43202233	6mer	43202215	43202234	145	-28.73
CAediting_1524209	chrX_134546392_-	ENSG00000165102.13	ENST00000379644	hsa-miR-503-5p	43200276	43200282	7mer-m8	43200261	43200283	152	-20.67
CAediting_1524209	chrX_134546392_-	ENSG00000165102.13	ENST00000521576	hsa-miR-503-5p	43200276	43200282	7mer-m8	43200261	43200283	152	-20.67

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_1229413	chr17_67471544_+	ENSG00000165102.13	ENST00000379644	hsa-miR-548aa	43201469	43201476	8mer-1a	43201452	43201476	150	-8.89
CAediting_1229415	chr17_67471547_+	ENSG00000165102.13	ENST00000379644	hsa-miR-548aa	43201469	43201476	8mer-1a	43201452	43201476	150	-8.89
CAediting_524911	chr7_5495852_-	ENSG00000165102.13	ENST00000379644	hsa-miR-589-3p	43200717	43200723	7mer-m8	43200699	43200724	141	-17.35
CAediting_1351755	chr19_40282625_-	ENSG00000165102.13	ENST00000379644	hsa-miR-641	43199816	43199822	7mer-m8	43199800	43199823	140	-14.14
CAediting_1351755	chr19_40282625_-	ENSG00000165102.13	ENST00000379644	hsa-miR-641	43202077	43202082	6mer	43202058	43202083	141	-13.31
CAediting_468389	chr6_31355314_-	ENSG00000165102.13	ENST00000379644	hsa-miR-6891-5p	43201168	43201174	7mer-m8	43201155	43201175	144	-16.31
CAediting_228905	chr2_188297554_+	ENSG00000165102.13	ENST00000521576	hsa-miR-561-3p	43200539	43200545	7mer-m8	43200525	43200546	144	-3.98

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for HGSNAT

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000379644.7	protein_coding
ENST00000520704.1	nonsense_mediated_decay
ENST00000522082.4	protein_coding
ENST00000521576.1	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_636555	ENST00000379644.7	chr8_43200308_+	-1730.50	-1730.70	-1730.50
CAediting_636485	ENST00000520704.1	chr8_43168031_+	-588.80	-588.80	-614.90
CAediting_636486	ENST00000520704.1	chr8_43168054_+	-594.90	-588.80	-614.90
CAediting_636490	ENST00000520704.1	chr8_43173960_+	-590.00	-588.80	-614.90
CAediting_636491	ENST00000520704.1	chr8_43173961_+	-591.50	-588.80	-614.90
CAediting_636492	ENST00000520704.1	chr8_43174032_+	-588.10	-588.80	-614.90
CAediting_636493	ENST00000520704.1	chr8_43174040_+	-591.00	-588.80	-614.90
CAediting_636494	ENST00000520704.1	chr8_43174051_+	-592.10	-588.80	-614.90
CAediting_636495	ENST00000520704.1	chr8_43174054_+	-588.30	-588.80	-614.90
CAediting_636496	ENST00000520704.1	chr8_43174070_+	-589.10	-588.80	-614.90
CAediting_636497	ENST00000520704.1	chr8_43174080_+	-589.40	-588.80	-614.90
CAediting_636498	ENST00000520704.1	chr8_43174086_+	-588.80	-588.80	-614.90
CAediting_636499	ENST00000520704.1	chr8_43174096_+	-588.90	-588.80	-614.90
CAediting_636500	ENST00000520704.1	chr8_43174097_+	-594.20	-588.80	-614.90
CAediting_636501	ENST00000520704.1	chr8_43174106_+	-588.80	-588.80	-614.90
CAediting_636502	ENST00000520704.1	chr8_43174123_+	-588.40	-588.80	-614.90
CAediting_636503	ENST00000520704.1	chr8_43174128_+	-588.30	-588.80	-614.90
CAediting_636504	ENST00000520704.1	chr8_43174132_+	-589.60	-588.80	-614.90
CAediting_636505	ENST00000520704.1	chr8_43174138_+	-588.80	-588.80	-614.90
CAediting_636506	ENST00000520704.1	chr8_43174142_+	-595.00	-588.80	-614.90
CAediting_636507	ENST00000520704.1	chr8_43174162_+	-587.90	-588.80	-614.90
CAediting_636508	ENST00000520704.1	chr8_43174172_+	-590.70	-588.80	-614.90
CAediting_636548	ENST00000522082.4	chr8_43182400_+	-191.20	-184.60	-191.20
CAediting_636555	ENST00000521576.1	chr8_43200308_+	-832.70	-829.10	-832.70

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Relation with ADAR for HGSNAT

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for HGSNAT

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
STAD	pathologic_stage	CAediting_636532	chr8_43177373_+	0.0335631477757111	-0.272577672147353

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Relation with survival for HGSNAT

Correlation between RNA editing and survival

Cancer	CAeditomID	position	KMpvalue	Coxpvalue	CoxHR
ESCA	CAediting_636531	chr8_43177372_+	0.0443141540703296	0.0324843	14.3849

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RelatedDrugs for HGSNAT

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for HGSNAT

Diseases associated with this gene.
(DisGeNet 7.0)

Gene	Disease ID	Disease name	# pubmeds	Source
HGSNAT	C0086649	MPS III C	11	CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT
HGSNAT	C4225287	RETINITIS PIGMENTOSA 73	3	CTD_human;GENOMICS_ENGLAND;UNIPROT
HGSNAT	C0026706	Mucopolysaccharidosis III	2	CTD_human;GENOMICS_ENGLAND
HGSNAT	C0035334	Retinitis Pigmentosa	1	ORPHANET

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene