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Editing gene: ZFP42 (CAeditome ID:132625)

Gene summary for ZFP42

Gene summary

Gene information	Gene symbol	ZFP42
	Gene ID	132625
	Gene name	ZFP42 zinc finger protein
	Synonyms	REX-1\|REX1\|ZNF754\|zfp-42
	Cytomap	4q35.2
	Type of gene	protein-coding
	Description	zinc finger protein 42 homologREX1 transcription factorreduced expression protein 1zinc finger protein 754
	Modification date	20210518
	UniProtAcc	Q96MM3
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene	GO ID	GO term	PubMed ID
ZFP42	GO:1990837	Zinc finger protein 42 homolog	28473536
ZFP42	GO:0005737	Zinc finger protein 42 homolog	16344273
ZFP42	GO:0005737	Zinc finger protein 42 homolog	18281244

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RNA A-to-I events for ZFP42

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000179059.8

RNA A-to-I editing events in Cancer.

CAediting_395549(187999119, +), CAediting_395550(187999132, +), CAediting_395551(188004170, +), CAediting_395552(188004174, +), CAediting_395553(188004176, +), CAediting_395554(188004192, +), CAediting_395555(188004193, +), CAediting_395556(188004199, +), CAediting_395557(188004212, +), CAediting_395558(188004217, +), CAediting_395559(188004219, +), CAediting_395560(188004269, +), CAediting_395561(188004394, +), CAediting_395562(188004399, +), CAediting_395563(188004400, +), CAediting_395564(188004420, +), CAediting_395565(188004424, +), CAediting_395566(188004437, +), CAediting_395567(188004445, +), CAediting_395568(188004500, +), CAediting_395569(188004567, +), CAediting_395570(188004594, +), CAediting_395571(188004641, +), CAediting_395572(188004659, +), CAediting_395573(188004681, +), CAediting_395574(188004691, +), CAediting_395575(188004694, +), CAediting_395576(188004702, +), CAediting_395577(188004708, +), CAediting_395578(188004713, +), CAediting_395579(188004727, +), CAediting_395580(188004767, +), CAediting_395581(188004773, +),

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RNA editing positional annotations for ZFP42 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_395549	chr4_187999119_+	UTR5
CAediting_395550	chr4_187999132_+	UTR5
CAediting_395551	chr4_188004170_+	UTR3
CAediting_395552	chr4_188004174_+	UTR3
CAediting_395553	chr4_188004176_+	UTR3
CAediting_395554	chr4_188004192_+	UTR3
CAediting_395555	chr4_188004193_+	UTR3
CAediting_395556	chr4_188004199_+	UTR3
CAediting_395557	chr4_188004212_+	UTR3
CAediting_395558	chr4_188004217_+	UTR3
CAediting_395559	chr4_188004219_+	UTR3
CAediting_395560	chr4_188004269_+	UTR3
CAediting_395561	chr4_188004394_+	UTR3
CAediting_395562	chr4_188004399_+	UTR3
CAediting_395563	chr4_188004400_+	UTR3
CAediting_395564	chr4_188004420_+	UTR3
CAediting_395565	chr4_188004424_+	UTR3
CAediting_395566	chr4_188004437_+	UTR3
CAediting_395567	chr4_188004445_+	UTR3
CAediting_395568	chr4_188004500_+	UTR3
CAediting_395569	chr4_188004567_+	UTR3
CAediting_395570	chr4_188004594_+	UTR3
CAediting_395571	chr4_188004641_+	UTR3
CAediting_395572	chr4_188004659_+	UTR3
CAediting_395573	chr4_188004681_+	UTR3
CAediting_395574	chr4_188004691_+	UTR3
CAediting_395575	chr4_188004694_+	UTR3
CAediting_395576	chr4_188004702_+	UTR3
CAediting_395577	chr4_188004708_+	UTR3
CAediting_395578	chr4_188004713_+	UTR3
CAediting_395579	chr4_188004727_+	UTR3
CAediting_395580	chr4_188004767_+	UTR3
CAediting_395581	chr4_188004773_+	UTR3

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_395549	chr4_187999119_+	SINE	Alu	AluSx3
CAediting_395550	chr4_187999132_+	SINE	Alu	AluSx3
CAediting_395551	chr4_188004170_+	SINE	Alu	AluJr
CAediting_395552	chr4_188004174_+	SINE	Alu	AluJr
CAediting_395553	chr4_188004176_+	SINE	Alu	AluJr
CAediting_395554	chr4_188004192_+	SINE	Alu	AluJr
CAediting_395555	chr4_188004193_+	SINE	Alu	AluJr
CAediting_395556	chr4_188004199_+	SINE	Alu	AluJr
CAediting_395557	chr4_188004212_+	SINE	Alu	AluJr
CAediting_395558	chr4_188004217_+	SINE	Alu	AluJr
CAediting_395559	chr4_188004219_+	SINE	Alu	AluJr
CAediting_395560	chr4_188004269_+	SINE	Alu	AluJr
CAediting_395561	chr4_188004394_+	SINE	Alu	AluSz
CAediting_395562	chr4_188004399_+	SINE	Alu	AluSz
CAediting_395563	chr4_188004400_+	SINE	Alu	AluSz
CAediting_395564	chr4_188004420_+	SINE	Alu	AluSz
CAediting_395565	chr4_188004424_+	SINE	Alu	AluSz
CAediting_395566	chr4_188004437_+	SINE	Alu	AluSz
CAediting_395567	chr4_188004445_+	SINE	Alu	AluSz
CAediting_395568	chr4_188004500_+	SINE	Alu	AluSz
CAediting_395569	chr4_188004567_+	SINE	Alu	AluSz
CAediting_395570	chr4_188004594_+	SINE	Alu	AluSz
CAediting_395571	chr4_188004641_+	SINE	Alu	AluJr
CAediting_395572	chr4_188004659_+	SINE	Alu	AluJr
CAediting_395573	chr4_188004681_+	SINE	Alu	AluJr
CAediting_395574	chr4_188004691_+	SINE	Alu	AluJr
CAediting_395575	chr4_188004694_+	SINE	Alu	AluJr
CAediting_395576	chr4_188004702_+	SINE	Alu	AluJr
CAediting_395577	chr4_188004708_+	SINE	Alu	AluJr
CAediting_395578	chr4_188004713_+	SINE	Alu	AluJr
CAediting_395579	chr4_188004727_+	SINE	Alu	AluJr
CAediting_395580	chr4_188004767_+	SINE	Alu	AluJr
CAediting_395581	chr4_188004773_+	SINE	Alu	AluJr

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RNA A-to-I editing events in the alternative splicing sites for ZFP42

RNA A-to-I editing(s) in the alternative splicing sites.

AStype

CAeditomID

Editing position

AS position

AS direction

Exonic location

Wildtype sequence

Wildtype splicing strength

RNA edited sequence

RNA edited splicing strength

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000179059.8.ZFP42.

Correlation between RNA A-to-I editing and PSI for ENSG00000179059.8.ZFP42.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZFP42

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ZFP42

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for ZFP42

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_395553	chr4_188004176_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6872-3p	188004170	188004176	7mer-m8	188004156	188004177	148.00	-16.72
CAediting_395553	chr4_188004176_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6872-3p	188004170	188004176	7mer-m8	188004156	188004177	148.00	-16.72
CAediting_395555	chr4_188004193_+	ENSG00000179059.8	ENST00000509524	hsa-miR-8052	188004191	188004197	7mer-1a	188004179	188004197	140.00	-24.32
CAediting_395555	chr4_188004193_+	ENSG00000179059.8	ENST00000618147	hsa-miR-8052	188004191	188004197	7mer-1a	188004179	188004197	140.00	-24.32
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000509524	hsa-miR-212-5p	188004213	188004219	7mer-m8	188004197	188004220	150.00	-16.74
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6747-3p	188004217	188004224	8mer-1a	188004202	188004224	157.00	-26.12
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000618147	hsa-miR-212-5p	188004213	188004219	7mer-m8	188004197	188004220	150.00	-16.74
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6747-3p	188004217	188004224	8mer-1a	188004202	188004224	157.00	-26.12
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000509524	hsa-miR-17-3p	188004393	188004399	7mer-m8	188004380	188004400	153.00	-18.02
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3929	188004397	188004402	6mer	188004379	188004403	140.00	-27.65
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000509524	hsa-miR-485-5p	188004397	188004403	7mer-m8	188004384	188004404	153.00	-17.86
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6884-5p	188004397	188004403	7mer-m8	188004382	188004404	146.00	-20.16
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000618147	hsa-miR-17-3p	188004393	188004399	7mer-m8	188004380	188004400	153.00	-18.02
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3929	188004397	188004402	6mer	188004379	188004403	140.00	-27.65
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000618147	hsa-miR-485-5p	188004397	188004403	7mer-m8	188004384	188004404	153.00	-17.86
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6884-5p	188004397	188004403	7mer-m8	188004382	188004404	146.00	-20.16
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6771-5p	188004439	188004445	7mer-m8	188004426	188004446	166.00	-37.26
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6771-5p	188004439	188004445	7mer-m8	188004426	188004446	166.00	-37.26
CAediting_395571	chr4_188004641_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4480	188004636	188004642	7mer-m8	188004623	188004643	147.00	-14.60
CAediting_395571	chr4_188004641_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4662a-5p	188004638	188004644	7mer-m8	188004622	188004645	154.00	-11.48
CAediting_395571	chr4_188004641_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4480	188004636	188004642	7mer-m8	188004623	188004643	147.00	-14.60
CAediting_395571	chr4_188004641_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4662a-5p	188004638	188004644	7mer-m8	188004622	188004645	154.00	-11.48
CAediting_395574	chr4_188004691_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6747-3p	188004689	188004696	8mer-1a	188004674	188004696	149.00	-23.42
CAediting_395574	chr4_188004691_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6747-3p	188004689	188004696	8mer-1a	188004674	188004696	149.00	-23.42
CAediting_395576	chr4_188004702_+	ENSG00000179059.8	ENST00000509524	hsa-miR-5196-3p	188004695	188004701	7mer-m8	188004678	188004702	152.00	-24.32
CAediting_395576	chr4_188004702_+	ENSG00000179059.8	ENST00000618147	hsa-miR-5196-3p	188004695	188004701	7mer-m8	188004678	188004702	152.00	-24.32
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3136-3p	188004704	188004710	7mer-m8	188004690	188004711	163.00	-20.43
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6773-5p	188004706	188004712	7mer-m8	188004691	188004713	151.00	-24.31
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-7155-3p	188004704	188004710	7mer-m8	188004690	188004711	148.00	-22.72
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3136-3p	188004704	188004710	7mer-m8	188004690	188004711	163.00	-20.43
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6724-5p	188004706	188004712	7mer-m8	188004692	188004713	145.00	-23.89
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6773-5p	188004706	188004712	7mer-m8	188004691	188004713	151.00	-24.31
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-7155-3p	188004704	188004710	7mer-m8	188004690	188004711	148.00	-22.72
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-1184	188004723	188004729	7mer-m8	188004704	188004730	148.00	-19.73
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-1184	188004723	188004729	7mer-m8	188004704	188004730	148.00	-19.73
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-1184	188004723	188004729	7mer-m8	188004704	188004730	148.00	-19.73
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4418	188004724	188004730	7mer-m8	188004715	188004731	149.00	-21.77
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-509-3-5p	188004724	188004730	7mer-m8	188004711	188004731	145.00	-17.63
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-509-5p	188004724	188004730	7mer-m8	188004711	188004731	142.00	-15.40
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-509-5p	188004724	188004730	7mer-m8	188004711	188004731	142.00	-15.40
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-7156-3p	188004722	188004728	7mer-m8	188004707	188004729	142.00	-24.54
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-1184	188004723	188004729	7mer-m8	188004704	188004730	148.00	-19.73
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-1184	188004723	188004729	7mer-m8	188004704	188004730	148.00	-19.73
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-1184	188004723	188004729	7mer-m8	188004704	188004730	148.00	-19.73
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4418	188004724	188004730	7mer-m8	188004715	188004731	149.00	-21.77
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-509-3-5p	188004724	188004730	7mer-m8	188004711	188004731	145.00	-17.63
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-509-5p	188004724	188004730	7mer-m8	188004711	188004731	142.00	-15.40
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-509-5p	188004724	188004730	7mer-m8	188004711	188004731	142.00	-15.40
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-7156-3p	188004722	188004728	7mer-m8	188004707	188004729	142.00	-24.54
CAediting_395580	chr4_188004767_+	ENSG00000179059.8	ENST00000509524	hsa-miR-215-3p	188004764	188004770	7mer-m8	188004749	188004771	149.00	-13.03
CAediting_395580	chr4_188004767_+	ENSG00000179059.8	ENST00000618147	hsa-miR-215-3p	188004764	188004770	7mer-m8	188004749	188004771	149.00	-13.03
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000509524	hsa-miR-513a-5p	188004186	188004192	7mer-m8	188004176	188004193	148.00	-18.07
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000509524	hsa-miR-513a-5p	188004186	188004192	7mer-m8	188004176	188004193	148.00	-18.07
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000509524	hsa-miR-638	188004191	188004197	7mer-1a	188004171	188004197	147.00	-30.28
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000618147	hsa-miR-513a-5p	188004186	188004192	7mer-m8	188004176	188004193	148.00	-18.07
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000618147	hsa-miR-513a-5p	188004186	188004192	7mer-m8	188004176	188004193	148.00	-18.07
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000618147	hsa-miR-638	188004191	188004197	7mer-1a	188004171	188004197	147.00	-30.28
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-302a-3p	188004197	188004203	7mer-m8	188004177	188004204	144.00	-11.02
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-302b-3p	188004197	188004203	7mer-m8	188004177	188004204	148.00	-12.17
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-302c-3p	188004197	188004203	7mer-m8	188004177	188004204	152.00	-14.54
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-302d-3p	188004197	188004203	7mer-m8	188004177	188004204	144.00	-10.25
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-302e	188004197	188004203	7mer-m8	188004188	188004204	141.00	-8.62
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-372-3p	188004197	188004203	7mer-m8	188004184	188004204	153.00	-16.03
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-373-3p	188004197	188004203	7mer-m8	188004182	188004204	163.00	-18.37
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-512-3p	188004196	188004202	7mer-m8	188004182	188004203	149.00	-15.00
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-512-3p	188004196	188004202	7mer-m8	188004182	188004203	149.00	-15.00
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-520a-3p	188004197	188004203	7mer-m8	188004183	188004204	140.00	-11.03
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-520b-3p	188004197	188004203	7mer-m8	188004185	188004204	141.00	-16.52
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-520c-3p	188004197	188004203	7mer-m8	188004184	188004204	146.00	-16.52
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-520d-3p	188004197	188004203	7mer-m8	188004183	188004204	140.00	-13.09
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-520e-3p	188004197	188004203	7mer-m8	188004184	188004204	140.00	-13.32
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6506-5p	188004192	188004198	7mer-m8	188004177	188004199	144.00	-13.90
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-302a-3p	188004197	188004203	7mer-m8	188004177	188004204	144.00	-11.02
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-302b-3p	188004197	188004203	7mer-m8	188004177	188004204	148.00	-12.17
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-302c-3p	188004197	188004203	7mer-m8	188004177	188004204	152.00	-14.54
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-302d-3p	188004197	188004203	7mer-m8	188004177	188004204	144.00	-10.25
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-302e	188004197	188004203	7mer-m8	188004188	188004204	141.00	-8.62
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-372-3p	188004197	188004203	7mer-m8	188004184	188004204	153.00	-16.03
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-373-3p	188004197	188004203	7mer-m8	188004182	188004204	163.00	-18.37
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-512-3p	188004196	188004202	7mer-m8	188004182	188004203	149.00	-15.00
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-512-3p	188004196	188004202	7mer-m8	188004182	188004203	149.00	-15.00
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-520a-3p	188004197	188004203	7mer-m8	188004183	188004204	140.00	-11.03
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-520b-3p	188004197	188004203	7mer-m8	188004185	188004204	141.00	-16.52
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-520c-3p	188004197	188004203	7mer-m8	188004184	188004204	146.00	-16.52
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-520d-3p	188004197	188004203	7mer-m8	188004183	188004204	140.00	-13.09
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-520e-3p	188004197	188004203	7mer-m8	188004184	188004204	140.00	-13.32
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6506-5p	188004192	188004198	7mer-m8	188004177	188004199	144.00	-13.90
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4716-5p	188004263	188004269	7mer-m8	188004249	188004270	148.00	-14.09
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6511b-3p	188004267	188004274	8mer-1a	188004252	188004274	140.00	-17.97
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6511b-3p	188004267	188004274	8mer-1a	188004252	188004274	140.00	-17.97
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4716-5p	188004263	188004269	7mer-m8	188004249	188004270	148.00	-14.09
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6511a-3p	188004267	188004274	8mer-1a	188004253	188004274	145.00	-18.84
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6511b-3p	188004267	188004274	8mer-1a	188004252	188004274	140.00	-17.97
CAediting_395560	chr4_188004269_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6511b-3p	188004267	188004274	8mer-1a	188004252	188004274	140.00	-17.97
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3622a-3p	188004416	188004423	8mer-1a	188004402	188004423	148.00	-19.42
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3622b-3p	188004416	188004423	8mer-1a	188004403	188004423	153.00	-23.04
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4539	188004414	188004419	6mer	188004401	188004420	145.00	-21.50
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3622a-3p	188004416	188004423	8mer-1a	188004402	188004423	148.00	-19.42
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3622b-3p	188004416	188004423	8mer-1a	188004403	188004423	153.00	-23.04
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4539	188004414	188004419	6mer	188004401	188004420	145.00	-21.50
CAediting_395569	chr4_188004567_+	ENSG00000179059.8	ENST00000509524	hsa-miR-7112-5p	188004560	188004566	7mer-m8	188004546	188004567	157.00	-21.30
CAediting_395569	chr4_188004567_+	ENSG00000179059.8	ENST00000618147	hsa-miR-7112-5p	188004560	188004566	7mer-m8	188004546	188004567	157.00	-21.30
CAediting_395570	chr4_188004594_+	ENSG00000179059.8	ENST00000509524	hsa-miR-106a-3p	188004590	188004595	6mer	188004575	188004596	141.00	-21.13
CAediting_395570	chr4_188004594_+	ENSG00000179059.8	ENST00000618147	hsa-miR-106a-3p	188004590	188004595	6mer	188004575	188004596	141.00	-21.13
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6793-3p	188004205	188004211	7mer-m8	188004193	188004212	140.00	-16.78
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6793-3p	188004205	188004211	7mer-m8	188004193	188004212	140.00	-16.78
CAediting_395565	chr4_188004424_+	ENSG00000179059.8	ENST00000509524	hsa-miR-1255b-2-3p	188004418	188004424	7mer-m8	188004404	188004425	140.00	-12.05
CAediting_395565	chr4_188004424_+	ENSG00000179059.8	ENST00000509524	hsa-miR-589-5p	188004422	188004428	7mer-m8	188004408	188004429	160.00	-19.83
CAediting_395565	chr4_188004424_+	ENSG00000179059.8	ENST00000618147	hsa-miR-1255b-2-3p	188004418	188004424	7mer-m8	188004404	188004425	140.00	-12.05
CAediting_395565	chr4_188004424_+	ENSG00000179059.8	ENST00000618147	hsa-miR-589-5p	188004422	188004428	7mer-m8	188004408	188004429	160.00	-19.83

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000509524	hsa-miR-10399-5p	188004187	188004193	7mer-m8	188004171	188004194	146	-11.52
CAediting_395555	chr4_188004193_+	ENSG00000179059.8	ENST00000509524	hsa-miR-10399-5p	188004187	188004193	7mer-m8	188004171	188004194	146	-11.52
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-10400-3p	188004706	188004712	7mer-m8	188004692	188004713	140	-22.13
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000509524	hsa-miR-10400-3p	188004706	188004712	7mer-m8	188004692	188004713	140	-22.13
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000509524	hsa-miR-1183	188004724	188004730	7mer-m8	188004705	188004731	140	-22.85
CAediting_395573	chr4_188004681_+	ENSG00000179059.8	ENST00000509524	hsa-miR-1200	188004677	188004683	7mer-m8	188004663	188004684	147	-19.44
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-12126	188004441	188004448	8mer-1a	188004425	188004448	147	-17.56
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000509524	hsa-miR-1343-3p	188004709	188004715	7mer-m8	188004696	188004716	150	-21.06
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000509524	hsa-miR-150-5p	188004206	188004212	7mer-m8	188004192	188004213	145	-17.81
CAediting_395551	chr4_188004170_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3064-5p	188004164	188004170	7mer-m8	188004151	188004171	145	-19.07
CAediting_395551	chr4_188004170_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3085-3p	188004164	188004170	7mer-m8	188004149	188004171	141	-15.19
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-30b-3p	188004438	188004445	8mer-1a	188004424	188004445	152	-16.11
CAediting_395561	chr4_188004394_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3174	188004390	188004395	6mer	188004375	188004396	143	-18.84
CAediting_395565	chr4_188004424_+	ENSG00000179059.8	ENST00000509524	hsa-miR-34b-3p	188004419	188004425	7mer-m8	188004403	188004426	148	-10.25
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3614-5p	188004417	188004423	7mer-1a	188004401	188004423	148	-22.44
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3689a-3p	188004438	188004445	8mer-1a	188004425	188004445	148	-20.24
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3689b-3p	188004438	188004445	8mer-1a	188004425	188004445	147	-16.65
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3689c	188004438	188004445	8mer-1a	188004425	188004445	147	-16.65
CAediting_395562	chr4_188004399_+	ENSG00000179059.8	ENST00000509524	hsa-miR-377-5p	188004397	188004403	7mer-m8	188004383	188004404	155	-17.55
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000509524	hsa-miR-377-5p	188004397	188004403	7mer-m8	188004383	188004404	155	-17.55
CAediting_395574	chr4_188004691_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3977	188004687	188004693	7mer-m8	188004669	188004694	146	-10.11
CAediting_395575	chr4_188004694_+	ENSG00000179059.8	ENST00000509524	hsa-miR-3977	188004687	188004693	7mer-m8	188004669	188004694	146	-10.11
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4437	188004705	188004712	8mer-1a	188004692	188004712	153	-20.44
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4478	188004434	188004440	7mer-m8	188004425	188004441	151	-23.16
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4649-3p	188004431	188004437	7mer-m8	188004418	188004438	147	-17.11
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4674	188004706	188004712	7mer-m8	188004693	188004713	147	-23.1
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000509524	hsa-miR-4674	188004706	188004712	7mer-m8	188004693	188004713	147	-23.1
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000509524	hsa-miR-485-5p	188004435	188004441	7mer-m8	188004421	188004442	155	-22.8
CAediting_395555	chr4_188004193_+	ENSG00000179059.8	ENST00000509524	hsa-miR-5089-5p	188004191	188004198	8mer-1a	188004179	188004198	153	-15.28
CAediting_395562	chr4_188004399_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6086	188004397	188004403	7mer-m8	188004385	188004404	148	-21.93
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6086	188004397	188004403	7mer-m8	188004385	188004404	148	-21.93
CAediting_395569	chr4_188004567_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6134	188004564	188004570	7mer-m8	188004553	188004571	150	-18.96
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6513-5p	188004192	188004198	7mer-m8	188004177	188004199	154	-17.91
CAediting_395562	chr4_188004399_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6516-5p	188004393	188004399	7mer-m8	188004377	188004400	145	-13.88
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6516-5p	188004393	188004399	7mer-m8	188004377	188004400	145	-13.88
CAediting_395569	chr4_188004567_+	ENSG00000179059.8	ENST00000509524	hsa-miR-654-5p	188004562	188004568	7mer-m8	188004551	188004569	146	-18.6
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6778-3p	188004208	188004214	7mer-m8	188004196	188004215	147	-16.98
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6779-5p	188004438	188004445	8mer-1a	188004427	188004445	148	-21.26
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6780a-5p	188004438	188004445	8mer-1a	188004421	188004445	151	-25.87
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6783-3p	188004709	188004715	7mer-m8	188004695	188004716	154	-25.03
CAediting_395561	chr4_188004394_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6807-5p	188004387	188004393	7mer-m8	188004373	188004394	145	-20.34
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6878-3p	188004210	188004217	8mer-1a	188004197	188004217	142	-14.37
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6878-3p	188004210	188004217	8mer-1a	188004197	188004217	142	-14.37
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6884-5p	188004435	188004441	7mer-m8	188004419	188004442	153	-20.31
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000509524	hsa-miR-7151-3p	188004185	188004192	8mer-1a	188004172	188004192	140	-11.75
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000509524	hsa-miR-7158-5p	188004704	188004709	6mer	188004687	188004710	144	-24.23
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000509524	hsa-miR-7160-5p	188004432	188004438	7mer-m8	188004419	188004439	154	-20.39
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000509524	hsa-miR-887-5p	188004439	188004445	7mer-m8	188004424	188004446	145	-20.26
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000509524	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000509524	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000509524	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000509524	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000509524	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000509524	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000509524	hsa-miR-939-3p	188004708	188004715	8mer-1a	188004695	188004715	151	-22.41
CAediting_395576	chr4_188004702_+	ENSG00000179059.8	ENST00000509524	hsa-miR-9903	188004695	188004701	7mer-m8	188004681	188004702	148	-17.39
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000618147	hsa-miR-10399-5p	188004187	188004193	7mer-m8	188004171	188004194	146	-11.52
CAediting_395555	chr4_188004193_+	ENSG00000179059.8	ENST00000618147	hsa-miR-10399-5p	188004187	188004193	7mer-m8	188004171	188004194	146	-11.52
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-10400-3p	188004706	188004712	7mer-m8	188004692	188004713	140	-22.13
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000618147	hsa-miR-10400-3p	188004706	188004712	7mer-m8	188004692	188004713	140	-22.13
CAediting_395579	chr4_188004727_+	ENSG00000179059.8	ENST00000618147	hsa-miR-1183	188004724	188004730	7mer-m8	188004705	188004731	140	-22.85
CAediting_395573	chr4_188004681_+	ENSG00000179059.8	ENST00000618147	hsa-miR-1200	188004677	188004683	7mer-m8	188004663	188004684	147	-19.44
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-12126	188004441	188004448	8mer-1a	188004425	188004448	147	-17.56
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000618147	hsa-miR-1343-3p	188004709	188004715	7mer-m8	188004696	188004716	150	-21.06
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000618147	hsa-miR-150-5p	188004206	188004212	7mer-m8	188004192	188004213	145	-17.81
CAediting_395551	chr4_188004170_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3064-5p	188004164	188004170	7mer-m8	188004151	188004171	145	-19.07
CAediting_395551	chr4_188004170_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3085-3p	188004164	188004170	7mer-m8	188004149	188004171	141	-15.19
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-30b-3p	188004438	188004445	8mer-1a	188004424	188004445	152	-16.11
CAediting_395561	chr4_188004394_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3174	188004390	188004395	6mer	188004375	188004396	143	-18.84
CAediting_395565	chr4_188004424_+	ENSG00000179059.8	ENST00000618147	hsa-miR-34b-3p	188004419	188004425	7mer-m8	188004403	188004426	148	-10.25
CAediting_395564	chr4_188004420_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3614-5p	188004417	188004423	7mer-1a	188004401	188004423	148	-22.44
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3689a-3p	188004438	188004445	8mer-1a	188004425	188004445	148	-20.24
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3689b-3p	188004438	188004445	8mer-1a	188004425	188004445	147	-16.65
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3689c	188004438	188004445	8mer-1a	188004425	188004445	147	-16.65
CAediting_395562	chr4_188004399_+	ENSG00000179059.8	ENST00000618147	hsa-miR-377-5p	188004397	188004403	7mer-m8	188004383	188004404	155	-17.55
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000618147	hsa-miR-377-5p	188004397	188004403	7mer-m8	188004383	188004404	155	-17.55
CAediting_395574	chr4_188004691_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3977	188004687	188004693	7mer-m8	188004669	188004694	146	-10.11
CAediting_395575	chr4_188004694_+	ENSG00000179059.8	ENST00000618147	hsa-miR-3977	188004687	188004693	7mer-m8	188004669	188004694	146	-10.11
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4437	188004705	188004712	8mer-1a	188004692	188004712	153	-20.44
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4478	188004434	188004440	7mer-m8	188004425	188004441	151	-23.16
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4649-3p	188004431	188004437	7mer-m8	188004418	188004438	147	-17.11
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4674	188004706	188004712	7mer-m8	188004693	188004713	147	-23.1
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000618147	hsa-miR-4674	188004706	188004712	7mer-m8	188004693	188004713	147	-23.1
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000618147	hsa-miR-485-5p	188004435	188004441	7mer-m8	188004421	188004442	155	-22.8
CAediting_395555	chr4_188004193_+	ENSG00000179059.8	ENST00000618147	hsa-miR-5089-5p	188004191	188004198	8mer-1a	188004179	188004198	153	-15.28
CAediting_395562	chr4_188004399_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6086	188004397	188004403	7mer-m8	188004385	188004404	148	-21.93
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6086	188004397	188004403	7mer-m8	188004385	188004404	148	-21.93
CAediting_395569	chr4_188004567_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6134	188004564	188004570	7mer-m8	188004553	188004571	150	-18.96
CAediting_395556	chr4_188004199_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6513-5p	188004192	188004198	7mer-m8	188004177	188004199	154	-17.91
CAediting_395562	chr4_188004399_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6516-5p	188004393	188004399	7mer-m8	188004377	188004400	145	-13.88
CAediting_395563	chr4_188004400_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6516-5p	188004393	188004399	7mer-m8	188004377	188004400	145	-13.88
CAediting_395569	chr4_188004567_+	ENSG00000179059.8	ENST00000618147	hsa-miR-654-5p	188004562	188004568	7mer-m8	188004551	188004569	146	-18.6
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6778-3p	188004208	188004214	7mer-m8	188004196	188004215	147	-16.98
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6779-5p	188004438	188004445	8mer-1a	188004427	188004445	148	-21.26
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6780a-5p	188004438	188004445	8mer-1a	188004421	188004445	151	-25.87
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6783-3p	188004709	188004715	7mer-m8	188004695	188004716	154	-25.03
CAediting_395561	chr4_188004394_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6807-5p	188004387	188004393	7mer-m8	188004373	188004394	145	-20.34
CAediting_395557	chr4_188004212_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6878-3p	188004210	188004217	8mer-1a	188004197	188004217	142	-14.37
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6878-3p	188004210	188004217	8mer-1a	188004197	188004217	142	-14.37
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6884-5p	188004435	188004441	7mer-m8	188004419	188004442	153	-20.31
CAediting_395554	chr4_188004192_+	ENSG00000179059.8	ENST00000618147	hsa-miR-7151-3p	188004185	188004192	8mer-1a	188004172	188004192	140	-11.75
CAediting_395577	chr4_188004708_+	ENSG00000179059.8	ENST00000618147	hsa-miR-7158-5p	188004704	188004709	6mer	188004687	188004710	144	-24.23
CAediting_395566	chr4_188004437_+	ENSG00000179059.8	ENST00000618147	hsa-miR-7160-5p	188004432	188004438	7mer-m8	188004419	188004439	154	-20.39
CAediting_395567	chr4_188004445_+	ENSG00000179059.8	ENST00000618147	hsa-miR-887-5p	188004439	188004445	7mer-m8	188004424	188004446	145	-20.26
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000618147	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000618147	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000618147	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000618147	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395558	chr4_188004217_+	ENSG00000179059.8	ENST00000618147	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395559	chr4_188004219_+	ENSG00000179059.8	ENST00000618147	hsa-miR-9-5p	188004214	188004219	6mer	188004198	188004220	140	-17.59
CAediting_395578	chr4_188004713_+	ENSG00000179059.8	ENST00000618147	hsa-miR-939-3p	188004708	188004715	8mer-1a	188004695	188004715	151	-22.41
CAediting_395576	chr4_188004702_+	ENSG00000179059.8	ENST00000618147	hsa-miR-9903	188004695	188004701	7mer-m8	188004681	188004702	148	-17.39

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID	Position	ENSG	ENST	miRNA	Targetscan start	Targetscan end	Targetscan score	Miranda start	Miranda end	Miranda score	Miranda energy
CAediting_580943	chr7_100356700_+	ENSG00000179059.8	ENST00000509524	hsa-miR-6840-3p	188004408	188004414	7mer-m8	188004394	188004415	143	-27.39
CAediting_580943	chr7_100356700_+	ENSG00000179059.8	ENST00000618147	hsa-miR-6840-3p	188004408	188004414	7mer-m8	188004394	188004415	143	-27.39

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

Top

The effects of the RNA editing to the stability of the RNA structures for ZFP42

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST	ENST type	RNA structure without RNA A-to-I editing.	RNA structure with RNA A-to-I editing.
ENST00000326866.4	protein_coding
ENST00000509524.4	protein_coding
ENST00000618147.1	protein_coding

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID	ENST	Editing_Position	MFE_withoneAI	MFE_withoutAI	MFE_withmultipleAI
CAediting_395549	ENST00000326866.4	chr4_187999119_+	-903.40	-897.20	-956.50
CAediting_395550	ENST00000326866.4	chr4_187999132_+	-896.50	-897.20	-956.50
CAediting_395551	ENST00000326866.4	chr4_188004170_+	-896.50	-897.20	-956.50
CAediting_395552	ENST00000326866.4	chr4_188004174_+	-893.80	-897.20	-956.50
CAediting_395553	ENST00000326866.4	chr4_188004176_+	-895.90	-897.20	-956.50
CAediting_395554	ENST00000326866.4	chr4_188004192_+	-897.30	-897.20	-956.50
CAediting_395555	ENST00000326866.4	chr4_188004193_+	-897.20	-897.20	-956.50
CAediting_395556	ENST00000326866.4	chr4_188004199_+	-903.90	-897.20	-956.50
CAediting_395557	ENST00000326866.4	chr4_188004212_+	-896.30	-897.20	-956.50
CAediting_395558	ENST00000326866.4	chr4_188004217_+	-902.50	-897.20	-956.50
CAediting_395559	ENST00000326866.4	chr4_188004219_+	-903.10	-897.20	-956.50
CAediting_395560	ENST00000326866.4	chr4_188004269_+	-903.80	-897.20	-956.50
CAediting_395561	ENST00000326866.4	chr4_188004394_+	-896.80	-897.20	-956.50
CAediting_395562	ENST00000326866.4	chr4_188004399_+	-899.00	-897.20	-956.50
CAediting_395563	ENST00000326866.4	chr4_188004400_+	-897.40	-897.20	-956.50
CAediting_395564	ENST00000326866.4	chr4_188004420_+	-899.60	-897.20	-956.50
CAediting_395565	ENST00000326866.4	chr4_188004424_+	-896.30	-897.20	-956.50
CAediting_395566	ENST00000326866.4	chr4_188004437_+	-899.00	-897.20	-956.50
CAediting_395567	ENST00000326866.4	chr4_188004445_+	-896.90	-897.20	-956.50
CAediting_395568	ENST00000326866.4	chr4_188004500_+	-897.30	-897.20	-956.50
CAediting_395569	ENST00000326866.4	chr4_188004567_+	-900.80	-897.20	-956.50
CAediting_395570	ENST00000326866.4	chr4_188004594_+	-897.20	-897.20	-956.50
CAediting_395571	ENST00000326866.4	chr4_188004641_+	-897.20	-897.20	-956.50
CAediting_395572	ENST00000326866.4	chr4_188004659_+	-897.20	-897.20	-956.50
CAediting_395573	ENST00000326866.4	chr4_188004681_+	-896.50	-897.20	-956.50
CAediting_395574	ENST00000326866.4	chr4_188004691_+	-903.80	-897.20	-956.50
CAediting_395575	ENST00000326866.4	chr4_188004694_+	-901.90	-897.20	-956.50
CAediting_395576	ENST00000326866.4	chr4_188004702_+	-899.80	-897.20	-956.50
CAediting_395577	ENST00000326866.4	chr4_188004708_+	-896.30	-897.20	-956.50
CAediting_395578	ENST00000326866.4	chr4_188004713_+	-901.10	-897.20	-956.50
CAediting_395579	ENST00000326866.4	chr4_188004727_+	-903.50	-897.20	-956.50
CAediting_395580	ENST00000326866.4	chr4_188004767_+	-898.90	-897.20	-956.50
CAediting_395581	ENST00000326866.4	chr4_188004773_+	-900.10	-897.20	-956.50
CAediting_395551	ENST00000509524.4	chr4_188004170_+	-818.90	-819.60	-883.80
CAediting_395552	ENST00000509524.4	chr4_188004174_+	-821.00	-819.60	-883.80
CAediting_395553	ENST00000509524.4	chr4_188004176_+	-819.30	-819.60	-883.80
CAediting_395554	ENST00000509524.4	chr4_188004192_+	-819.20	-819.60	-883.80
CAediting_395555	ENST00000509524.4	chr4_188004193_+	-819.60	-819.60	-883.80
CAediting_395556	ENST00000509524.4	chr4_188004199_+	-819.60	-819.60	-883.80
CAediting_395557	ENST00000509524.4	chr4_188004212_+	-818.70	-819.60	-883.80
CAediting_395558	ENST00000509524.4	chr4_188004217_+	-819.60	-819.60	-883.80
CAediting_395559	ENST00000509524.4	chr4_188004219_+	-822.50	-819.60	-883.80
CAediting_395560	ENST00000509524.4	chr4_188004269_+	-819.70	-819.60	-883.80
CAediting_395561	ENST00000509524.4	chr4_188004394_+	-819.20	-819.60	-883.80
CAediting_395562	ENST00000509524.4	chr4_188004399_+	-819.60	-819.60	-883.80
CAediting_395563	ENST00000509524.4	chr4_188004400_+	-825.90	-819.60	-883.80
CAediting_395564	ENST00000509524.4	chr4_188004420_+	-819.30	-819.60	-883.80
CAediting_395565	ENST00000509524.4	chr4_188004424_+	-819.90	-819.60	-883.80
CAediting_395566	ENST00000509524.4	chr4_188004437_+	-818.90	-819.60	-883.80
CAediting_395567	ENST00000509524.4	chr4_188004445_+	-823.00	-819.60	-883.80
CAediting_395568	ENST00000509524.4	chr4_188004500_+	-819.50	-819.60	-883.80
CAediting_395569	ENST00000509524.4	chr4_188004567_+	-820.30	-819.60	-883.80
CAediting_395570	ENST00000509524.4	chr4_188004594_+	-820.40	-819.60	-883.80
CAediting_395571	ENST00000509524.4	chr4_188004641_+	-819.30	-819.60	-883.80
CAediting_395572	ENST00000509524.4	chr4_188004659_+	-818.60	-819.60	-883.80
CAediting_395573	ENST00000509524.4	chr4_188004681_+	-823.20	-819.60	-883.80
CAediting_395574	ENST00000509524.4	chr4_188004691_+	-826.20	-819.60	-883.80
CAediting_395575	ENST00000509524.4	chr4_188004694_+	-822.20	-819.60	-883.80
CAediting_395576	ENST00000509524.4	chr4_188004702_+	-822.20	-819.60	-883.80
CAediting_395577	ENST00000509524.4	chr4_188004708_+	-818.60	-819.60	-883.80
CAediting_395578	ENST00000509524.4	chr4_188004713_+	-825.80	-819.60	-883.80
CAediting_395579	ENST00000509524.4	chr4_188004727_+	-825.90	-819.60	-883.80
CAediting_395580	ENST00000509524.4	chr4_188004767_+	-823.30	-819.60	-883.80
CAediting_395581	ENST00000509524.4	chr4_188004773_+	-823.30	-819.60	-883.80
CAediting_395551	ENST00000618147.1	chr4_188004170_+	-773.10	-773.80	-838.20
CAediting_395552	ENST00000618147.1	chr4_188004174_+	-775.20	-773.80	-838.20
CAediting_395553	ENST00000618147.1	chr4_188004176_+	-773.50	-773.80	-838.20
CAediting_395554	ENST00000618147.1	chr4_188004192_+	-773.30	-773.80	-838.20
CAediting_395555	ENST00000618147.1	chr4_188004193_+	-773.80	-773.80	-838.20
CAediting_395556	ENST00000618147.1	chr4_188004199_+	-773.80	-773.80	-838.20
CAediting_395557	ENST00000618147.1	chr4_188004212_+	-773.10	-773.80	-838.20
CAediting_395558	ENST00000618147.1	chr4_188004217_+	-773.80	-773.80	-838.20
CAediting_395559	ENST00000618147.1	chr4_188004219_+	-775.10	-773.80	-838.20
CAediting_395560	ENST00000618147.1	chr4_188004269_+	-774.10	-773.80	-838.20
CAediting_395561	ENST00000618147.1	chr4_188004394_+	-773.40	-773.80	-838.20
CAediting_395562	ENST00000618147.1	chr4_188004399_+	-773.80	-773.80	-838.20
CAediting_395563	ENST00000618147.1	chr4_188004400_+	-780.10	-773.80	-838.20
CAediting_395564	ENST00000618147.1	chr4_188004420_+	-773.50	-773.80	-838.20
CAediting_395565	ENST00000618147.1	chr4_188004424_+	-774.10	-773.80	-838.20
CAediting_395566	ENST00000618147.1	chr4_188004437_+	-773.10	-773.80	-838.20
CAediting_395567	ENST00000618147.1	chr4_188004445_+	-777.20	-773.80	-838.20
CAediting_395568	ENST00000618147.1	chr4_188004500_+	-773.70	-773.80	-838.20
CAediting_395569	ENST00000618147.1	chr4_188004567_+	-774.50	-773.80	-838.20
CAediting_395570	ENST00000618147.1	chr4_188004594_+	-774.60	-773.80	-838.20
CAediting_395571	ENST00000618147.1	chr4_188004641_+	-773.50	-773.80	-838.20
CAediting_395572	ENST00000618147.1	chr4_188004659_+	-772.80	-773.80	-838.20
CAediting_395573	ENST00000618147.1	chr4_188004681_+	-777.40	-773.80	-838.20
CAediting_395574	ENST00000618147.1	chr4_188004691_+	-780.40	-773.80	-838.20
CAediting_395575	ENST00000618147.1	chr4_188004694_+	-776.40	-773.80	-838.20
CAediting_395576	ENST00000618147.1	chr4_188004702_+	-776.40	-773.80	-838.20
CAediting_395577	ENST00000618147.1	chr4_188004708_+	-772.80	-773.80	-838.20
CAediting_395578	ENST00000618147.1	chr4_188004713_+	-780.00	-773.80	-838.20
CAediting_395579	ENST00000618147.1	chr4_188004727_+	-780.10	-773.80	-838.20
CAediting_395580	ENST00000618147.1	chr4_188004767_+	-779.80	-773.80	-838.20
CAediting_395581	ENST00000618147.1	chr4_188004773_+	-779.80	-773.80	-838.20

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Relation with ADAR for ZFP42

Correlation between ADAR gene expression and RNA editing frequency

Cancer	CAeditomID	position	ADAR1 (p-val)	ADAR1 (coeff.)	ADAR2 (p-val)	ADAR2 (coeff.)	ADAR3 (p-val)	ADAR3 (coeff.)
TGCT	CAediting_395551	chr4_188004170_+	9.3284075773688e-07	0.459389406155597	.	.	.	.
TGCT	CAediting_395553	chr4_188004176_+	1.19987240227289e-05	0.455252174951076	.	.	.	.
LUAD	CAediting_395563	chr4_188004400_+	0.000357361594447516	0.480626914521073	.	.	.	.
TGCT	CAediting_395563	chr4_188004400_+	1.94860091135919e-11	0.550836409555024	.	.	.	.
TGCT	CAediting_395574	chr4_188004691_+	4.00725838441957e-12	0.583688591449651	.	.	.	.

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Relation with cancer stages for ZFP42

Correlation between Cancer stages and RNA editing frequency

Cancer	Stage_type	CAeditomID	position	P-val	Coeff.
LUAD	pathologic_stage	CAediting_395563	chr4_188004400_+	0.0341356720746142	-0.297271826639546
TGCT	clinical_stage	CAediting_395563	chr4_188004400_+	0.0321025481819682	-0.251134162404497
TGCT	pathologic_stage	CAediting_395563	chr4_188004400_+	0.00368520828989793	-0.33574785490322

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Relation with survival for ZFP42

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for ZFP42

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for ZFP42

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene