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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: COL4A1 (CAeditome ID:1282) |
Gene summary for COL4A1 |
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Gene information | Gene symbol | COL4A1 | Gene ID | 1282 |
Gene name | collagen type IV alpha 1 chain | |
Synonyms | BSVD|BSVD1|COL4A1s|PADMAL|RATOR | |
Cytomap | 13q34 | |
Type of gene | protein-coding | |
Description | collagen alpha-1(IV) chainCOL4A1 NC1 domainarrestencollagen IV, alpha-1 polypeptidecollagen of basement membrane, alpha-1 chain | |
Modification date | 20210518 | |
UniProtAcc | P02462 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
COL4A1 | GO:0048407 | Collagen alpha-1(IV) chain | 8900172 |
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RNA A-to-I events for COL4A1 |
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CAediting_972898(110155784, -), CAediting_972899(110155790, -), CAediting_972900(110158880, -), CAediting_972901(110160771, -), CAediting_972902(110160780, -), CAediting_972903(110160841, -), CAediting_972904(110160882, -), CAediting_972905(110160884, -), CAediting_972906(110160886, -), CAediting_972907(110160888, -), CAediting_972908(110160889, -), CAediting_972909(110160891, -), CAediting_972910(110160975, -), CAediting_972911(110160981, -), CAediting_972912(110160982, -), CAediting_972913(110168112, -), CAediting_972914(110170899, -), CAediting_972915(110172169, -), CAediting_972916(110172609, -), CAediting_972917(110185878, -), CAediting_972918(110186431, -), CAediting_972919(110187863, -), CAediting_972920(110189186, -), CAediting_972921(110189258, -), CAediting_972922(110214376, -), CAediting_972923(110215449, -), CAediting_972924(110215478, -), CAediting_972925(110224358, -), CAediting_972926(110224391, -), CAediting_972927(110224401, -), CAediting_972928(110224460, -), CAediting_972929(110224461, -), CAediting_972930(110224487, -), CAediting_972931(110234482, -), CAediting_972932(110287951, -), CAediting_972933(110289536, -), CAediting_972934(110289551, -), CAediting_972935(110289554, -), CAediting_972936(110289558, -), CAediting_972937(110289580, -), CAediting_972938(110295563, -), |
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RNA editing positional annotations for COL4A1 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_972898 | chr13_110155784_- | intronic |
CAediting_972899 | chr13_110155790_- | intronic |
CAediting_972900 | chr13_110158880_- | intronic |
CAediting_972901 | chr13_110160771_- | intronic |
CAediting_972902 | chr13_110160780_- | intronic |
CAediting_972903 | chr13_110160841_- | intronic |
CAediting_972904 | chr13_110160882_- | intronic |
CAediting_972905 | chr13_110160884_- | intronic |
CAediting_972906 | chr13_110160886_- | intronic |
CAediting_972907 | chr13_110160888_- | intronic |
CAediting_972908 | chr13_110160889_- | intronic |
CAediting_972909 | chr13_110160891_- | intronic |
CAediting_972910 | chr13_110160975_- | intronic |
CAediting_972911 | chr13_110160981_- | intronic |
CAediting_972912 | chr13_110160982_- | intronic |
CAediting_972913 | chr13_110168112_- | intronic |
CAediting_972914 | chr13_110170899_- | intronic |
CAediting_972915 | chr13_110172169_- | intronic |
CAediting_972916 | chr13_110172609_- | intronic |
CAediting_972917 | chr13_110185878_- | intronic |
CAediting_972918 | chr13_110186431_- | exonic |
CAediting_972919 | chr13_110187863_- | intronic |
CAediting_972920 | chr13_110189186_- | intronic |
CAediting_972921 | chr13_110189258_- | intronic |
CAediting_972922 | chr13_110214376_- | intronic |
CAediting_972923 | chr13_110215449_- | intronic |
CAediting_972924 | chr13_110215478_- | intronic |
CAediting_972925 | chr13_110224358_- | intronic |
CAediting_972926 | chr13_110224391_- | intronic |
CAediting_972927 | chr13_110224401_- | intronic |
CAediting_972928 | chr13_110224460_- | intronic |
CAediting_972929 | chr13_110224461_- | intronic |
CAediting_972930 | chr13_110224487_- | intronic |
CAediting_972931 | chr13_110234482_- | intronic |
CAediting_972932 | chr13_110287951_- | intronic |
CAediting_972933 | chr13_110289536_- | intronic |
CAediting_972934 | chr13_110289551_- | intronic |
CAediting_972935 | chr13_110289554_- | intronic |
CAediting_972936 | chr13_110289558_- | intronic |
CAediting_972937 | chr13_110289580_- | intronic |
CAediting_972938 | chr13_110295563_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_972898 | chr13_110155784_- | SINE | Alu | AluSp |
CAediting_972899 | chr13_110155790_- | SINE | Alu | AluSp |
CAediting_972900 | chr13_110158880_- | SINE | Alu | AluSq2 |
CAediting_972901 | chr13_110160771_- | SINE | Alu | AluJb |
CAediting_972902 | chr13_110160780_- | SINE | Alu | AluJb |
CAediting_972903 | chr13_110160841_- | SINE | Alu | AluJb |
CAediting_972904 | chr13_110160882_- | SINE | Alu | AluJb |
CAediting_972905 | chr13_110160884_- | SINE | Alu | AluJb |
CAediting_972906 | chr13_110160886_- | SINE | Alu | AluJb |
CAediting_972907 | chr13_110160888_- | SINE | Alu | AluJb |
CAediting_972908 | chr13_110160889_- | SINE | Alu | AluJb |
CAediting_972909 | chr13_110160891_- | SINE | Alu | AluJb |
CAediting_972910 | chr13_110160975_- | SINE | Alu | AluJb |
CAediting_972911 | chr13_110160981_- | SINE | Alu | AluJb |
CAediting_972912 | chr13_110160982_- | SINE | Alu | AluJb |
CAediting_972913 | chr13_110168112_- | SINE | Alu | AluSx |
CAediting_972917 | chr13_110185878_- | LINE | L2 | L2b |
CAediting_972920 | chr13_110189186_- | SINE | Alu | AluSp |
CAediting_972921 | chr13_110189258_- | SINE | Alu | AluSp |
CAediting_972922 | chr13_110214376_- | SINE | Alu | AluSx |
CAediting_972923 | chr13_110215449_- | SINE | Alu | AluSx |
CAediting_972924 | chr13_110215478_- | SINE | Alu | AluSx |
CAediting_972925 | chr13_110224358_- | SINE | Alu | AluSx |
CAediting_972926 | chr13_110224391_- | SINE | Alu | AluSx |
CAediting_972927 | chr13_110224401_- | SINE | Alu | AluSx |
CAediting_972928 | chr13_110224460_- | SINE | Alu | AluSx |
CAediting_972929 | chr13_110224461_- | SINE | Alu | AluSx |
CAediting_972930 | chr13_110224487_- | SINE | Alu | AluSx |
CAediting_972931 | chr13_110234482_- | SINE | Alu | AluSz |
CAediting_972938 | chr13_110295563_- | SINE | Alu | AluSq2 |
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RNA A-to-I editing events in the alternative splicing sites for COL4A1 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for COL4A1 |
![]() * The grey color means N/A. |
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Protein coding region RNA A-to-I editings for COL4A1 |
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The effects of the RNA editing to the miRNA binding sites for COL4A1 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_1229413 | chr17_67471544_+ | ENSG00000187498.13 | ENST00000375820 | hsa-miR-548aa | 110149257 | 110149263 | 7mer-m8 | 110149256 | 110149280 | 145 | -15.04 |
CAediting_442554 | chr5_154685830_+ | ENSG00000187498.13 | ENST00000375820 | hsa-miR-1303 | 110149154 | 110149161 | 8mer-1a | 110149154 | 110149175 | 145 | -15.24 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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The effects of the RNA editing to the stability of the RNA structures for COL4A1 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
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Relation with ADAR for COL4A1 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
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Relation with cancer stages for COL4A1 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for COL4A1 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for COL4A1 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
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RelatedDiseases for COL4A1 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
COL4A1 | C4551998 | Porencephaly, Type 1, Autosomal Dominant | 18 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
COL4A1 | C2673195 | Angiopathy, Hereditary, With Nephropathy, Aneurysms, And Muscle Cramps | 6 | CTD_human;GENOMICS_ENGLAND;ORPHANET;UNIPROT |
COL4A1 | C1843512 | BRAIN SMALL VESSEL DISEASE WITH HEMORRHAGE | 4 | CTD_human;GENOMICS_ENGLAND;ORPHANET |
COL4A1 | C0018965 | Hematuria | 3 | GENOMICS_ENGLAND |
COL4A1 | C0266548 | Axenfeld anomaly (disorder) | 3 | CTD_human;GENOMICS_ENGLAND |
COL4A1 | C1860475 | Retinal vascular tortuosity | 3 | GENOMICS_ENGLAND |
COL4A1 | C0011881 | Diabetic Nephropathy | 2 | CTD_human |
COL4A1 | C0017667 | Nodular glomerulosclerosis | 2 | CTD_human |
COL4A1 | C0017668 | Focal glomerulosclerosis | 2 | CTD_human |
COL4A1 | C0086432 | Hyalinosis, Segmental Glomerular | 2 | CTD_human |
COL4A1 | C0265341 | Rieger syndrome | 2 | CTD_human |
COL4A1 | C0266484 | Schizencephaly | 2 | CTD_human;GENOMICS_ENGLAND;UNIPROT |
COL4A1 | C0302892 | Congenital porencephaly | 2 | CTD_human |
COL4A1 | C1280768 | Axenfeld syndrome | 2 | CTD_human |
COL4A1 | C1867983 | PORENCEPHALY, FAMILIAL | 2 | CTD_human;ORPHANET |
COL4A1 | C2675650 | Brain Small Vessel Disease With Axenfeld-Rieger Anomaly | 2 | CTD_human |
COL4A1 | C2678503 | AXENFELD-RIEGER SYNDROME, TYPE 3 | 2 | CTD_human |
COL4A1 | C3281105 | HEMORRHAGE, INTRACEREBRAL, SUSCEPTIBILITY TO | 2 | GENOMICS_ENGLAND;UNIPROT |
COL4A1 | C3495488 | Axenfeld-Rieger syndrome | 2 | CTD_human |
COL4A1 | C3698507 | Post-traumatic Porencephaly | 2 | CTD_human |
COL4A1 | C3714873 | Axenfeld-Rieger Syndrome, Type 1 | 2 | CTD_human |
COL4A1 | C4082173 | Porencephaly | 2 | CTD_human |
COL4A1 | C4082301 | Developmental Porencephaly | 2 | CTD_human |
COL4A1 | C0002878 | Anemia, Hemolytic | 1 | CTD_human |
COL4A1 | C0002879 | Anemia, Hemolytic, Acquired | 1 | CTD_human |
COL4A1 | C0002889 | Anemia, Microangiopathic | 1 | CTD_human |
COL4A1 | C0015393 | Eye Abnormalities | 1 | CTD_human |
COL4A1 | C0023893 | Liver Cirrhosis, Experimental | 1 | CTD_human |
COL4A1 | C0026848 | Myopathy | 1 | GENOMICS_ENGLAND |
COL4A1 | C0027726 | Nephrotic Syndrome | 1 | CTD_human |
COL4A1 | C0036572 | Seizures | 1 | GENOMICS_ENGLAND |
COL4A1 | C0038454 | Cerebrovascular accident | 1 | GENOMICS_ENGLAND |
COL4A1 | C0149931 | Migraine Disorders | 1 | GENOMICS_ENGLAND |
COL4A1 | C0221021 | Microangiopathic hemolytic anemia | 1 | CTD_human |
COL4A1 | C0265221 | Walker-Warburg congenital muscular dystrophy | 1 | ORPHANET |
COL4A1 | C0270612 | Leukoencephalopathy | 1 | CTD_human |
COL4A1 | C0338656 | Impaired cognition | 1 | GENOMICS_ENGLAND |
COL4A1 | C0424605 | Developmental delay (disorder) | 1 | GENOMICS_ENGLAND |
COL4A1 | C0497327 | Dementia | 1 | GENOMICS_ENGLAND |
COL4A1 | C0557874 | Global developmental delay | 1 | GENOMICS_ENGLAND |
COL4A1 | C1135196 | Heart Failure, Diastolic | 1 | CTD_human |
COL4A1 | C1858991 | Childhood Ataxia with Central Nervous System Hypomyelinization | 1 | CTD_human |
COL4A1 | C1867327 | RETINAL ARTERIES, TORTUOSITY OF | 1 | CTD_human;ORPHANET;UNIPROT |
COL4A1 | C2733158 | Cerebral Small Vessel Diseases | 1 | GENOMICS_ENGLAND |
COL4A1 | C2930808 | Familial vascular leukoencephalopathy | 1 | ORPHANET |
COL4A1 | C2931870 | Familial schizencephaly | 1 | ORPHANET |
COL4A1 | C4013035 | BRAIN SMALL VESSEL DISEASE WITH OR WITHOUT OCULAR ANOMALIES | 1 | GENOMICS_ENGLAND |