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![]() | Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples |
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![]() | The effects of the RNA editing to the stability of the RNA structures |
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Editing gene: SYT2 (CAeditome ID:127833) |
Gene summary for SYT2 |
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Gene information | Gene symbol | SYT2 | Gene ID | 127833 |
Gene name | synaptotagmin 2 | |
Synonyms | CMS7|MYSPC|SytII | |
Cytomap | 1q32.1 | |
Type of gene | protein-coding | |
Description | synaptotagmin-2synaptotagmin II | |
Modification date | 20210518 | |
UniProtAcc | Q8N9I0 | |
Context |
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Gene | GO ID | GO term | PubMed ID |
SYT2 | GO:1903861 | Synaptotagmin-2 | 23999003 |
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RNA A-to-I events for SYT2 |
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CAediting_131868(202592842, -), CAediting_131869(202592843, -), CAediting_131870(202592854, -), CAediting_131871(202592871, -), CAediting_131872(202592872, -), CAediting_131873(202592955, -), CAediting_131874(202592970, -), CAediting_131875(202611532, -), CAediting_131876(202611535, -), CAediting_131877(202626648, -), CAediting_131878(202683528, -), CAediting_131879(202683536, -), CAediting_131880(202683554, -), CAediting_131881(202683655, -), CAediting_131882(202699133, -), |
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RNA editing positional annotations for SYT2 using Annovar |
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CAeditome ID | Position | Variant type | ENST | NTchange | AAchange | SIFT_score | Polyphen2_HVAR_score | PROVEAN_pred |
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CAeditome ID | Position | Variant type |
CAediting_131868 | chr1_202592842_- | UTR3 |
CAediting_131869 | chr1_202592843_- | UTR3 |
CAediting_131870 | chr1_202592854_- | UTR3 |
CAediting_131871 | chr1_202592871_- | UTR3 |
CAediting_131872 | chr1_202592872_- | UTR3 |
CAediting_131873 | chr1_202592955_- | UTR3 |
CAediting_131874 | chr1_202592970_- | UTR3 |
CAediting_131875 | chr1_202611532_- | intronic |
CAediting_131876 | chr1_202611535_- | intronic |
CAediting_131877 | chr1_202626648_- | intronic |
CAediting_131878 | chr1_202683528_- | intronic |
CAediting_131879 | chr1_202683536_- | intronic |
CAediting_131880 | chr1_202683554_- | intronic |
CAediting_131881 | chr1_202683655_- | intronic |
CAediting_131882 | chr1_202699133_- | intronic |
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CAeditome ID | Position | Repeat family | Repeat sub family | Repeat name |
CAediting_131868 | chr1_202592842_- | DNA | hAT-Blackjack | MER53 |
CAediting_131869 | chr1_202592843_- | DNA | hAT-Blackjack | MER53 |
CAediting_131870 | chr1_202592854_- | DNA | hAT-Blackjack | MER53 |
CAediting_131871 | chr1_202592871_- | DNA | hAT-Blackjack | MER53 |
CAediting_131872 | chr1_202592872_- | DNA | hAT-Blackjack | MER53 |
CAediting_131873 | chr1_202592955_- | DNA | hAT-Blackjack | MER53 |
CAediting_131874 | chr1_202592970_- | DNA | hAT-Blackjack | MER53 |
CAediting_131875 | chr1_202611532_- | SINE | Alu | AluSq2 |
CAediting_131876 | chr1_202611535_- | SINE | Alu | AluSq2 |
CAediting_131877 | chr1_202626648_- | SINE | Alu | AluJo |
CAediting_131878 | chr1_202683528_- | SINE | Alu | AluJr |
CAediting_131879 | chr1_202683536_- | SINE | Alu | AluJr |
CAediting_131880 | chr1_202683554_- | SINE | Alu | AluJr |
CAediting_131881 | chr1_202683655_- | SINE | Alu | AluJr |
CAediting_131882 | chr1_202699133_- | SINE | Alu | AluJo |
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RNA A-to-I editing events in the alternative splicing sites for SYT2 |
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AStype | CAeditomID | Editing position | AS position | AS direction | Exonic location | Wildtype sequence | Wildtype splicing strength | RNA edited sequence | RNA edited splicing strength |
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Differntial gene expression between RNA A-to-I edited versus non-edited samples for SYT2 |
![]() * The grey color means N/A. |
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TGCT.CAediting_131874.ENSG00000143858.SYT2.png ![]() |
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Protein coding region RNA A-to-I editings for SYT2 |
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The effects of the RNA editing to the miRNA binding sites for SYT2 |
**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page. |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_131874 | chr1_202592970_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-153-5p | 202592970 | 202592976 | 7mer-m8 | 202592969 | 202592989 | 149.00 | -9.38 |
CAediting_131874 | chr1_202592970_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-20a-3p | 202592967 | 202592973 | 7mer-m8 | 202592966 | 202592987 | 144.00 | -9.30 |
CAediting_131874 | chr1_202592970_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-153-5p | 202592970 | 202592976 | 7mer-m8 | 202592969 | 202592989 | 149.00 | -9.38 |
CAediting_131874 | chr1_202592970_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-20a-3p | 202592967 | 202592973 | 7mer-m8 | 202592966 | 202592987 | 144.00 | -9.30 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-221-3p | 202592841 | 202592847 | 7mer-m8 | 202592840 | 202592863 | 147.00 | -17.18 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-222-3p | 202592841 | 202592847 | 7mer-m8 | 202592840 | 202592860 | 151.00 | -13.85 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-5690 | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592857 | 144.00 | -14.51 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-221-3p | 202592841 | 202592847 | 7mer-m8 | 202592840 | 202592863 | 147.00 | -17.18 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-222-3p | 202592841 | 202592847 | 7mer-m8 | 202592840 | 202592860 | 151.00 | -13.85 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-5690 | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592857 | 144.00 | -14.51 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-23a-3p | 202592842 | 202592848 | 7mer-m8 | 202592841 | 202592857 | 142.00 | -13.51 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-23b-3p | 202592842 | 202592848 | 7mer-m8 | 202592841 | 202592863 | 140.00 | -10.02 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-23c | 202592842 | 202592848 | 7mer-m8 | 202592841 | 202592862 | 140.00 | -8.26 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-4704-3p | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592858 | 158.00 | -15.85 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-23a-3p | 202592842 | 202592848 | 7mer-m8 | 202592841 | 202592857 | 142.00 | -13.51 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-23b-3p | 202592842 | 202592848 | 7mer-m8 | 202592841 | 202592863 | 140.00 | -10.02 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-23c | 202592842 | 202592848 | 7mer-m8 | 202592841 | 202592862 | 140.00 | -8.26 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-4704-3p | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592858 | 158.00 | -15.85 |
CAediting_131870 | chr1_202592854_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-216a-5p | 202592851 | 202592857 | 7mer-m8 | 202592850 | 202592872 | 160.00 | -15.55 |
CAediting_131870 | chr1_202592854_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-4330 | 202592853 | 202592860 | 8mer-1a | 202592853 | 202592872 | 145.00 | -9.40 |
CAediting_131870 | chr1_202592854_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-216a-5p | 202592851 | 202592857 | 7mer-m8 | 202592850 | 202592872 | 160.00 | -15.55 |
CAediting_131870 | chr1_202592854_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-4330 | 202592853 | 202592860 | 8mer-1a | 202592853 | 202592872 | 145.00 | -9.40 |
CAediting_131872 | chr1_202592872_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-153-5p | 202592871 | 202592878 | 8mer-1a | 202592871 | 202592895 | 158.00 | -18.21 |
CAediting_131872 | chr1_202592872_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-153-5p | 202592871 | 202592878 | 8mer-1a | 202592871 | 202592895 | 158.00 | -18.21 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_131870 | chr1_202592854_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-205-3p | 202592852 | 202592858 | 7mer-m8 | 202592851 | 202592871 | 148 | -9.21 |
CAediting_131873 | chr1_202592955_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-379-3p | 202592952 | 202592958 | 7mer-m8 | 202592951 | 202592971 | 148 | -14.39 |
CAediting_131873 | chr1_202592955_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-411-3p | 202592952 | 202592958 | 7mer-m8 | 202592951 | 202592974 | 146 | -11.98 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-935 | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592860 | 140 | -12.59 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-935 | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592860 | 140 | -12.59 |
CAediting_131871 | chr1_202592871_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-944 | 202592869 | 202592875 | 7mer-m8 | 202592868 | 202592889 | 148 | -6.73 |
CAediting_131872 | chr1_202592872_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-944 | 202592869 | 202592875 | 7mer-m8 | 202592868 | 202592889 | 148 | -6.73 |
CAediting_131870 | chr1_202592854_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-205-3p | 202592852 | 202592858 | 7mer-m8 | 202592851 | 202592871 | 148 | -9.21 |
CAediting_131873 | chr1_202592955_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-379-3p | 202592952 | 202592958 | 7mer-m8 | 202592951 | 202592971 | 148 | -14.39 |
CAediting_131873 | chr1_202592955_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-411-3p | 202592952 | 202592958 | 7mer-m8 | 202592951 | 202592974 | 146 | -11.98 |
CAediting_131868 | chr1_202592842_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-935 | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592860 | 140 | -12.59 |
CAediting_131869 | chr1_202592843_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-935 | 202592839 | 202592845 | 7mer-m8 | 202592838 | 202592860 | 140 | -12.59 |
CAediting_131871 | chr1_202592871_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-944 | 202592869 | 202592875 | 7mer-m8 | 202592868 | 202592889 | 148 | -6.73 |
CAediting_131872 | chr1_202592872_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-944 | 202592869 | 202592875 | 7mer-m8 | 202592868 | 202592889 | 148 | -6.73 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-605-3p | 202595463 | 202595468 | 6mer | 202595455 | 202595476 | 140 | -15.38 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-605-3p | 202595456 | 202595462 | 7mer-m8 | 202595455 | 202595476 | 140 | -15.38 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-605-3p | 202593135 | 202593142 | 8mer-1a | 202593135 | 202593156 | 148 | -14.59 |
CAediting_846604 | chr11_93733708_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-1304-3p | 202593418 | 202593425 | 8mer-1a | 202593418 | 202593439 | 168 | -26.01 |
CAediting_980496 | chr14_31014685_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-624-3p | 202592297 | 202592303 | 7mer-m8 | 202592296 | 202592318 | 150 | -19.42 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-605-3p | 202595463 | 202595468 | 6mer | 202595455 | 202595476 | 140 | -15.38 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-605-3p | 202595456 | 202595462 | 7mer-m8 | 202595455 | 202595476 | 140 | -15.38 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-605-3p | 202593135 | 202593142 | 8mer-1a | 202593135 | 202593156 | 148 | -14.59 |
CAediting_846604 | chr11_93733708_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-1304-3p | 202593418 | 202593425 | 8mer-1a | 202593418 | 202593439 | 168 | -26.01 |
CAediting_980496 | chr14_31014685_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-624-3p | 202592297 | 202592303 | 7mer-m8 | 202592296 | 202592318 | 150 | -19.42 |
CAediting_1054808 | chr15_66496985_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-4512 | 202591435 | 202591442 | 8mer-1a | 202591435 | 202591456 | 140 | -21.71 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-548aa | 202595950 | 202595956 | 7mer-m8 | 202595949 | 202595973 | 145 | -9.81 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-548aa | 202591923 | 202591929 | 7mer-m8 | 202591922 | 202591946 | 140 | -12.4 |
CAediting_1351755 | chr19_40282625_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-641 | 202592075 | 202592081 | 7mer-m8 | 202592074 | 202592097 | 147 | -19.23 |
CAediting_1368054 | chr19_46709310_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-320e | 202591897 | 202591902 | 6mer | 202591896 | 202591913 | 148 | -19.25 |
CAediting_1368054 | chr19_46709310_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-320e | 202591079 | 202591085 | 7mer-m8 | 202591078 | 202591095 | 148 | -20.01 |
CAediting_1399425 | chr20_1392958_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-6869-5p | 202595301 | 202595307 | 7mer-m8 | 202595300 | 202595321 | 148 | -20.54 |
CAediting_442554 | chr5_154685830_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-1303 | 202592070 | 202592076 | 7mer-m8 | 202592069 | 202592093 | 148 | -21.1 |
CAediting_604450 | chr7_133034877_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-3654 | 202592227 | 202592233 | 7mer-m8 | 202592226 | 202592242 | 147 | -21.23 |
CAediting_524911 | chr7_5495852_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-589-3p | 202593121 | 202593127 | 7mer-m8 | 202593120 | 202593143 | 144 | -12.75 |
CAediting_1054808 | chr15_66496985_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-4512 | 202591435 | 202591442 | 8mer-1a | 202591435 | 202591456 | 140 | -21.71 |
CAediting_1229413 | chr17_67471544_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-548aa | 202595950 | 202595956 | 7mer-m8 | 202595949 | 202595973 | 145 | -9.81 |
CAediting_1229415 | chr17_67471547_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-548aa | 202591923 | 202591929 | 7mer-m8 | 202591922 | 202591946 | 140 | -12.4 |
CAediting_1351755 | chr19_40282625_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-641 | 202592075 | 202592081 | 7mer-m8 | 202592074 | 202592097 | 147 | -19.23 |
CAediting_1368054 | chr19_46709310_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-320e | 202591897 | 202591902 | 6mer | 202591896 | 202591913 | 148 | -19.25 |
CAediting_1368054 | chr19_46709310_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-320e | 202591079 | 202591085 | 7mer-m8 | 202591078 | 202591095 | 148 | -20.01 |
CAediting_1399425 | chr20_1392958_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-6869-5p | 202595301 | 202595307 | 7mer-m8 | 202595300 | 202595321 | 148 | -20.54 |
CAediting_442554 | chr5_154685830_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-1303 | 202592070 | 202592076 | 7mer-m8 | 202592069 | 202592093 | 148 | -21.1 |
CAediting_604450 | chr7_133034877_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-3654 | 202592227 | 202592233 | 7mer-m8 | 202592226 | 202592242 | 147 | -21.23 |
CAediting_524911 | chr7_5495852_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-589-3p | 202593121 | 202593127 | 7mer-m8 | 202593120 | 202593143 | 144 | -12.75 |
CAediting_468389 | chr6_31355314_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-6891-5p | 202592390 | 202592396 | 7mer-m8 | 202592389 | 202592409 | 156 | -27.65 |
CAediting_468389 | chr6_31355314_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-6891-5p | 202592390 | 202592396 | 7mer-m8 | 202592389 | 202592409 | 156 | -27.65 |
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CAeditom_ID | Position | ENSG | ENST | miRNA | Targetscan start | Targetscan end | Targetscan score | Miranda start | Miranda end | Miranda score | Miranda energy |
CAediting_86358 | chr1_109598906_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-197-5p | 202595301 | 202595308 | 8mer-1a | 202595301 | 202595323 | 152 | -24.42 |
CAediting_1306324 | chr19_13836464_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-27a-3p | 202592704 | 202592710 | 7mer-m8 | 202592703 | 202592723 | 148 | -15.85 |
CAediting_1306323 | chr19_13836462_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-27a-3p | 202592704 | 202592710 | 7mer-m8 | 202592703 | 202592723 | 148 | -15.85 |
CAediting_604450 | chr7_133034877_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-3654 | 202592957 | 202592963 | 7mer-m8 | 202592956 | 202592974 | 154 | -18.77 |
CAediting_1054808 | chr15_66496985_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-4512 | 202595096 | 202595102 | 7mer-m8 | 202595095 | 202595116 | 150 | -15.48 |
CAediting_524911 | chr7_5495852_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-589-3p | 202592192 | 202592198 | 7mer-m8 | 202592191 | 202592212 | 145 | -11.21 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-605-3p | 202594121 | 202594127 | 7mer-m8 | 202594120 | 202594141 | 150 | -15.28 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-605-3p | 202590771 | 202590777 | 7mer-m8 | 202590770 | 202590791 | 140 | -11.3 |
CAediting_1351755 | chr19_40282625_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-641 | 202596266 | 202596271 | 6mer | 202596265 | 202596289 | 140 | -14.71 |
CAediting_1351755 | chr19_40282625_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-641 | 202591093 | 202591099 | 7mer-m8 | 202591092 | 202591115 | 140 | -10.73 |
CAediting_580943 | chr7_100356700_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-6840-3p | 202593052 | 202593057 | 6mer | 202593051 | 202593072 | 140 | -26.73 |
CAediting_580943 | chr7_100356700_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-6840-3p | 202591832 | 202591838 | 7mer-m8 | 202591831 | 202591853 | 143 | -21.1 |
CAediting_580943 | chr7_100356700_+ | ENSG00000143858.10 | ENST00000367267 | hsa-miR-6840-3p | 202595928 | 202595935 | 8mer-1a | 202595928 | 202595951 | 150 | -25.33 |
CAediting_468389 | chr6_31355314_- | ENSG00000143858.10 | ENST00000367267 | hsa-miR-6891-5p | 202595146 | 202595152 | 7mer-m8 | 202595145 | 202595163 | 145 | -18.28 |
CAediting_86358 | chr1_109598906_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-197-5p | 202595301 | 202595308 | 8mer-1a | 202595301 | 202595323 | 152 | -24.42 |
CAediting_1306324 | chr19_13836464_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-27a-3p | 202592704 | 202592710 | 7mer-m8 | 202592703 | 202592723 | 148 | -15.85 |
CAediting_1306323 | chr19_13836462_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-27a-3p | 202592704 | 202592710 | 7mer-m8 | 202592703 | 202592723 | 148 | -15.85 |
CAediting_604450 | chr7_133034877_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-3654 | 202592957 | 202592963 | 7mer-m8 | 202592956 | 202592974 | 154 | -18.77 |
CAediting_1054808 | chr15_66496985_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-4512 | 202595096 | 202595102 | 7mer-m8 | 202595095 | 202595116 | 150 | -15.48 |
CAediting_524911 | chr7_5495852_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-589-3p | 202592192 | 202592198 | 7mer-m8 | 202592191 | 202592212 | 145 | -11.21 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-605-3p | 202594121 | 202594127 | 7mer-m8 | 202594120 | 202594141 | 150 | -15.28 |
CAediting_748296 | chr10_51299626_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-605-3p | 202590771 | 202590777 | 7mer-m8 | 202590770 | 202590791 | 140 | -11.3 |
CAediting_1351755 | chr19_40282625_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-641 | 202596266 | 202596271 | 6mer | 202596265 | 202596289 | 140 | -14.71 |
CAediting_1351755 | chr19_40282625_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-641 | 202591093 | 202591099 | 7mer-m8 | 202591092 | 202591115 | 140 | -10.73 |
CAediting_580943 | chr7_100356700_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-6840-3p | 202593052 | 202593057 | 6mer | 202593051 | 202593072 | 140 | -26.73 |
CAediting_580943 | chr7_100356700_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-6840-3p | 202591832 | 202591838 | 7mer-m8 | 202591831 | 202591853 | 143 | -21.1 |
CAediting_580943 | chr7_100356700_+ | ENSG00000143858.10 | ENST00000367268 | hsa-miR-6840-3p | 202595928 | 202595935 | 8mer-1a | 202595928 | 202595951 | 150 | -25.33 |
CAediting_468389 | chr6_31355314_- | ENSG00000143858.10 | ENST00000367268 | hsa-miR-6891-5p | 202595146 | 202595152 | 7mer-m8 | 202595145 | 202595163 | 145 | -18.28 |
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The effects of the RNA editing to the stability of the RNA structures for SYT2 |
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ENST | ENST type | RNA structure without RNA A-to-I editing. | RNA structure with RNA A-to-I editing. |
ENST00000367267.4 | protein_coding | ![]() | ![]() |
ENST00000367268.4 | protein_coding | ![]() | ![]() |
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CAeditom_ID | ENST | Editing_Position | MFE_withoneAI | MFE_withoutAI | MFE_withmultipleAI |
CAediting_131868 | ENST00000367267.4 | chr1_202592842_- | -2823.00 | -2823.00 | -2831.90 |
CAediting_131869 | ENST00000367267.4 | chr1_202592843_- | -2823.10 | -2823.00 | -2831.90 |
CAediting_131870 | ENST00000367267.4 | chr1_202592854_- | -2823.10 | -2823.00 | -2831.90 |
CAediting_131871 | ENST00000367267.4 | chr1_202592871_- | -2826.50 | -2823.00 | -2831.90 |
CAediting_131872 | ENST00000367267.4 | chr1_202592872_- | -2824.00 | -2823.00 | -2831.90 |
CAediting_131873 | ENST00000367267.4 | chr1_202592955_- | -2823.00 | -2823.00 | -2831.90 |
CAediting_131874 | ENST00000367267.4 | chr1_202592970_- | -2829.70 | -2823.00 | -2831.90 |
CAediting_131868 | ENST00000367268.4 | chr1_202592842_- | -2805.80 | -2805.80 | -2814.70 |
CAediting_131869 | ENST00000367268.4 | chr1_202592843_- | -2805.90 | -2805.80 | -2814.70 |
CAediting_131870 | ENST00000367268.4 | chr1_202592854_- | -2805.90 | -2805.80 | -2814.70 |
CAediting_131871 | ENST00000367268.4 | chr1_202592871_- | -2809.30 | -2805.80 | -2814.70 |
CAediting_131872 | ENST00000367268.4 | chr1_202592872_- | -2806.80 | -2805.80 | -2814.70 |
CAediting_131873 | ENST00000367268.4 | chr1_202592955_- | -2805.80 | -2805.80 | -2814.70 |
CAediting_131874 | ENST00000367268.4 | chr1_202592970_- | -2812.50 | -2805.80 | -2814.70 |
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Relation with ADAR for SYT2 |
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Cancer | CAeditomID | position | ADAR1 (p-val) | ADAR1 (coeff.) | ADAR2 (p-val) | ADAR2 (coeff.) | ADAR3 (p-val) | ADAR3 (coeff.) |
PCPG | CAediting_131873 | chr1_202592955_- | 0.000151751767558058 | 0.429123851024833 | . | . | . | . |
PCPG | CAediting_131874 | chr1_202592970_- | 1.1226838820397e-12 | 0.587582726656256 | 0.0216534280565933 | 0.2077703066367 | . | . |
TGCT | CAediting_131874 | chr1_202592970_- | 2.35630804702216e-09 | 0.64412156357849 | . | . | . | . |
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Relation with cancer stages for SYT2 |
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Cancer | Stage_type | CAeditomID | position | P-val | Coeff. |
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Relation with survival for SYT2 |
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Cancer | CAeditomID | position | KMpvalue | Coxpvalue | CoxHR |
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RelatedDrugs for SYT2 |
![]() (DrugBank Version 5.1.8 2021-01-03) |
Gene | UniProtAcc | DrugBank ID | Drug name | Drug activity | Drug type | Drug status |
SYT2 | Q8N9I0 | DB00042 | Botulinum Toxin Type B | Synaptotagmin-2 | BiotechDrug | approved|investigational |
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RelatedDiseases for SYT2 |
![]() (DisGeNet 7.0) |
Gene | Disease ID | Disease name | # pubmeds | Source |
SYT2 | C4015038 | MYASTHENIC SYNDROME, CONGENITAL, 7, PRESYNAPTIC | 2 | GENOMICS_ENGLAND;UNIPROT |
SYT2 | C0751884 | Congenital Myasthenic Syndromes, Presynaptic | 1 | CTD_human;ORPHANET |