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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CNN2 (CAeditome ID:1265)

Gene summary for CNN2

check button Gene summary
Gene informationGene symbol

CNN2

Gene ID

1265

Gene namecalponin 2
Synonyms-
Cytomap

19p13.3

Type of geneprotein-coding
Descriptioncalponin-2calponin H2, smooth muscleneutral calponin
Modification date20210518
UniProtAcc

Q99439

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID
CNN2

GO:0032970

Calponin-2

16236705

CNN2

GO:0071260

Calponin-2

16236705

CNN2

GO:0001725

Calponin-2

16236705


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RNA A-to-I events for CNN2

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000064666.13
boxplot

check button RNA A-to-I editing events in Cancer.
CAediting_1270326(1029720, +), CAediting_1270327(1029721, +), CAediting_1270328(1029725, +), CAediting_1270329(1029727, +), CAediting_1270330(1029755, +), CAediting_1270331(1029764, +), CAediting_1270332(1029799, +), CAediting_1270333(1029800, +), CAediting_1270334(1029825, +), CAediting_1270335(1029829, +), CAediting_1270336(1029839, +), CAediting_1270337(1029879, +), CAediting_1270338(1029896, +), CAediting_1270339(1029899, +), CAediting_1270340(1029913, +), CAediting_1270341(1029959, +), CAediting_1270342(1029961, +), CAediting_1270343(1029982, +), CAediting_1270344(1029991, +), CAediting_1270345(1030130, +), CAediting_1270346(1030255, +), CAediting_1270347(1030372, +), CAediting_1270348(1030511, +), CAediting_1270349(1030515, +), CAediting_1270350(1030535, +), CAediting_1270351(1030626, +), CAediting_1270352(1030627, +), CAediting_1270353(1030628, +), CAediting_1270354(1030665, +), CAediting_1270355(1031879, +), CAediting_1270356(1031880, +), CAediting_1270357(1032013, +), CAediting_1270358(1032018, +), CAediting_1270359(1032108, +), CAediting_1270360(1032791, +), CAediting_1270361(1032810, +), CAediting_1270362(1032818, +), CAediting_1270363(1032829, +), CAediting_1270364(1032834, +), CAediting_1270365(1032835, +), CAediting_1270366(1032843, +), CAediting_1270367(1032848, +), CAediting_1270368(1032859, +), CAediting_1270369(1032865, +), CAediting_1270370(1032879, +), CAediting_1270371(1032896, +), CAediting_1270372(1032908, +), CAediting_1270373(1032918, +), CAediting_1270374(1032944, +), CAediting_1270375(1032953, +), CAediting_1270376(1032959, +), CAediting_1270377(1032976, +), CAediting_1270378(1032979, +), CAediting_1270379(1032988, +), CAediting_1270380(1033001, +), CAediting_1270381(1033013, +), CAediting_1270382(1033041, +), CAediting_1270383(1033053, +), CAediting_1270384(1033055, +), CAediting_1270385(1033059, +), CAediting_1270386(1033062, +), CAediting_1270387(1033229, +), CAediting_1270388(1033230, +), CAediting_1270389(1033254, +), CAediting_1270390(1033256, +), CAediting_1270391(1033262, +), CAediting_1270392(1033263, +), CAediting_1270393(1033268, +), CAediting_1270394(1033271, +), CAediting_1270395(1033305, +), CAediting_1270396(1033308, +), CAediting_1270397(1033317, +), CAediting_1270398(1033319, +), CAediting_1270399(1033322, +), CAediting_1270400(1033331, +), CAediting_1270401(1033332, +), CAediting_1270402(1033340, +), CAediting_1270403(1033356, +), CAediting_1270404(1033357, +), CAediting_1270405(1033361, +), CAediting_1270406(1033362, +), CAediting_1270407(1033364, +), CAediting_1270408(1033365, +), CAediting_1270409(1033366, +), CAediting_1270410(1033367, +), CAediting_1270411(1033368, +), CAediting_1270412(1033389, +), CAediting_1270413(1033397, +), CAediting_1270414(1033398, +), CAediting_1270415(1033432, +), CAediting_1270416(1033433, +), CAediting_1270417(1033446, +), CAediting_1270418(1033450, +), CAediting_1270419(1033458, +), CAediting_1270420(1033480, +), CAediting_1270421(1033488, +), CAediting_1270422(1033489, +), CAediting_1270423(1035673, +), CAediting_1270424(1035703, +), CAediting_1270425(1035708, +), CAediting_1270426(1035713, +), CAediting_1270427(1035722, +), CAediting_1270428(1035724, +), CAediting_1270429(1035736, +), CAediting_1270430(1035745, +), CAediting_1270431(1035746, +), CAediting_1270432(1035760, +), CAediting_1270433(1035761, +), CAediting_1270434(1035762, +), CAediting_1270435(1035763, +), CAediting_1270436(1035764, +), CAediting_1270437(1035766, +), CAediting_1270438(1035771, +), CAediting_1270439(1035772, +), CAediting_1270440(1035801, +), CAediting_1270441(1035811, +), CAediting_1270442(1035824, +), CAediting_1270443(1035828, +), CAediting_1270444(1035834, +), CAediting_1270445(1035842, +), CAediting_1270446(1035843, +), CAediting_1270447(1035863, +), CAediting_1270448(1035867, +), CAediting_1270449(1035874, +), CAediting_1270450(1035879, +), CAediting_1270451(1035887, +), CAediting_1270452(1035902, +), CAediting_1270453(1035904, +), CAediting_1270454(1035906, +), CAediting_1270455(1035910, +), CAediting_1270456(1036880, +), CAediting_1270457(1036975, +), CAediting_1270458(1036997, +), CAediting_1270459(1036999, +), CAediting_1270460(1037183, +), CAediting_1270461(1037321, +), CAediting_1270462(1037390, +), CAediting_1270463(1037399, +), CAediting_1270464(1037534, +), CAediting_1270465(1037543, +), CAediting_1270466(1038724, +),

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RNA editing positional annotations for CNN2 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1270458chr19_1036997_+nonsynonymous SNVENST00000568865.2c.A644Gp.Y215CD.N
CAediting_1270459chr19_1036999_+nonsynonymous SNVENST00000568865.2c.A646Gp.R216GD.N

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1270326chr19_1029720_+intronic
CAediting_1270327chr19_1029721_+intronic
CAediting_1270328chr19_1029725_+intronic
CAediting_1270329chr19_1029727_+intronic
CAediting_1270330chr19_1029755_+intronic
CAediting_1270331chr19_1029764_+intronic
CAediting_1270332chr19_1029799_+intronic
CAediting_1270333chr19_1029800_+intronic
CAediting_1270334chr19_1029825_+intronic
CAediting_1270335chr19_1029829_+intronic
CAediting_1270336chr19_1029839_+intronic
CAediting_1270337chr19_1029879_+intronic
CAediting_1270338chr19_1029896_+intronic
CAediting_1270339chr19_1029899_+intronic
CAediting_1270340chr19_1029913_+intronic
CAediting_1270341chr19_1029959_+intronic
CAediting_1270342chr19_1029961_+intronic
CAediting_1270343chr19_1029982_+intronic
CAediting_1270344chr19_1029991_+intronic
CAediting_1270345chr19_1030130_+intronic
CAediting_1270346chr19_1030255_+intronic
CAediting_1270347chr19_1030372_+intronic
CAediting_1270348chr19_1030511_+intronic
CAediting_1270349chr19_1030515_+intronic
CAediting_1270350chr19_1030535_+intronic
CAediting_1270351chr19_1030626_+intronic
CAediting_1270352chr19_1030627_+intronic
CAediting_1270353chr19_1030628_+intronic
CAediting_1270354chr19_1030665_+intronic
CAediting_1270355chr19_1031879_+intronic
CAediting_1270356chr19_1031880_+intronic
CAediting_1270357chr19_1032013_+intronic
CAediting_1270358chr19_1032018_+intronic
CAediting_1270359chr19_1032108_+intronic
CAediting_1270360chr19_1032791_+UTR3
CAediting_1270361chr19_1032810_+UTR3
CAediting_1270362chr19_1032818_+UTR3
CAediting_1270363chr19_1032829_+UTR3
CAediting_1270364chr19_1032834_+UTR3
CAediting_1270365chr19_1032835_+UTR3
CAediting_1270366chr19_1032843_+UTR3
CAediting_1270367chr19_1032848_+UTR3
CAediting_1270368chr19_1032859_+UTR3
CAediting_1270369chr19_1032865_+UTR3
CAediting_1270370chr19_1032879_+UTR3
CAediting_1270371chr19_1032896_+UTR3
CAediting_1270372chr19_1032908_+UTR3
CAediting_1270373chr19_1032918_+UTR3
CAediting_1270374chr19_1032944_+intronic
CAediting_1270375chr19_1032953_+intronic
CAediting_1270376chr19_1032959_+intronic
CAediting_1270377chr19_1032976_+intronic
CAediting_1270378chr19_1032979_+intronic
CAediting_1270379chr19_1032988_+intronic
CAediting_1270380chr19_1033001_+intronic
CAediting_1270381chr19_1033013_+intronic
CAediting_1270382chr19_1033041_+intronic
CAediting_1270383chr19_1033053_+intronic
CAediting_1270384chr19_1033055_+intronic
CAediting_1270385chr19_1033059_+intronic
CAediting_1270386chr19_1033062_+intronic
CAediting_1270387chr19_1033229_+intronic
CAediting_1270388chr19_1033230_+intronic
CAediting_1270389chr19_1033254_+intronic
CAediting_1270390chr19_1033256_+intronic
CAediting_1270391chr19_1033262_+intronic
CAediting_1270392chr19_1033263_+intronic
CAediting_1270393chr19_1033268_+intronic
CAediting_1270394chr19_1033271_+intronic
CAediting_1270395chr19_1033305_+intronic
CAediting_1270396chr19_1033308_+intronic
CAediting_1270397chr19_1033317_+intronic
CAediting_1270398chr19_1033319_+intronic
CAediting_1270399chr19_1033322_+intronic
CAediting_1270400chr19_1033331_+intronic
CAediting_1270401chr19_1033332_+intronic
CAediting_1270402chr19_1033340_+intronic
CAediting_1270403chr19_1033356_+intronic
CAediting_1270404chr19_1033357_+intronic
CAediting_1270405chr19_1033361_+intronic
CAediting_1270406chr19_1033362_+intronic
CAediting_1270407chr19_1033364_+intronic
CAediting_1270408chr19_1033365_+intronic
CAediting_1270409chr19_1033366_+intronic
CAediting_1270410chr19_1033367_+intronic
CAediting_1270411chr19_1033368_+intronic
CAediting_1270412chr19_1033389_+intronic
CAediting_1270413chr19_1033397_+intronic
CAediting_1270414chr19_1033398_+intronic
CAediting_1270415chr19_1033432_+intronic
CAediting_1270416chr19_1033433_+intronic
CAediting_1270417chr19_1033446_+intronic
CAediting_1270418chr19_1033450_+intronic
CAediting_1270419chr19_1033458_+intronic
CAediting_1270420chr19_1033480_+intronic
CAediting_1270421chr19_1033488_+intronic
CAediting_1270422chr19_1033489_+intronic
CAediting_1270423chr19_1035673_+intronic
CAediting_1270424chr19_1035703_+intronic
CAediting_1270425chr19_1035708_+intronic
CAediting_1270426chr19_1035713_+intronic
CAediting_1270427chr19_1035722_+intronic
CAediting_1270428chr19_1035724_+intronic
CAediting_1270429chr19_1035736_+intronic
CAediting_1270430chr19_1035745_+intronic
CAediting_1270431chr19_1035746_+intronic
CAediting_1270432chr19_1035760_+intronic
CAediting_1270433chr19_1035761_+intronic
CAediting_1270434chr19_1035762_+intronic
CAediting_1270435chr19_1035763_+intronic
CAediting_1270436chr19_1035764_+intronic
CAediting_1270437chr19_1035766_+intronic
CAediting_1270438chr19_1035771_+intronic
CAediting_1270439chr19_1035772_+intronic
CAediting_1270440chr19_1035801_+intronic
CAediting_1270441chr19_1035811_+intronic
CAediting_1270442chr19_1035824_+intronic
CAediting_1270443chr19_1035828_+intronic
CAediting_1270444chr19_1035834_+intronic
CAediting_1270445chr19_1035842_+intronic
CAediting_1270446chr19_1035843_+intronic
CAediting_1270447chr19_1035863_+intronic
CAediting_1270448chr19_1035867_+intronic
CAediting_1270449chr19_1035874_+intronic
CAediting_1270450chr19_1035879_+intronic
CAediting_1270451chr19_1035887_+intronic
CAediting_1270452chr19_1035902_+intronic
CAediting_1270453chr19_1035904_+intronic
CAediting_1270454chr19_1035906_+intronic
CAediting_1270455chr19_1035910_+intronic
CAediting_1270456chr19_1036880_+exonic
CAediting_1270457chr19_1036975_+exonic
CAediting_1270458chr19_1036997_+exonic
CAediting_1270459chr19_1036999_+exonic
CAediting_1270460chr19_1037183_+ncRNA_exonic
CAediting_1270461chr19_1037321_+ncRNA_exonic
CAediting_1270462chr19_1037390_+ncRNA_exonic
CAediting_1270463chr19_1037399_+ncRNA_exonic
CAediting_1270464chr19_1037534_+ncRNA_exonic
CAediting_1270465chr19_1037543_+ncRNA_exonic
CAediting_1270466chr19_1038724_+ncRNA_exonic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1270326chr19_1029720_+SINEAluAluSx1
CAediting_1270327chr19_1029721_+SINEAluAluSx1
CAediting_1270328chr19_1029725_+SINEAluAluSx1
CAediting_1270329chr19_1029727_+SINEAluAluSx1
CAediting_1270330chr19_1029755_+SINEAluAluSx1
CAediting_1270331chr19_1029764_+SINEAluAluSx1
CAediting_1270332chr19_1029799_+SINEAluAluSx1
CAediting_1270333chr19_1029800_+SINEAluAluSx1
CAediting_1270334chr19_1029825_+SINEAluAluSx1
CAediting_1270335chr19_1029829_+SINEAluAluSx1
CAediting_1270336chr19_1029839_+SINEAluAluSx1
CAediting_1270337chr19_1029879_+SINEAluAluSx1
CAediting_1270338chr19_1029896_+SINEAluAluSx1
CAediting_1270339chr19_1029899_+SINEAluAluSx1
CAediting_1270340chr19_1029913_+SINEAluAluSx1
CAediting_1270341chr19_1029959_+SINEAluAluSx1
CAediting_1270342chr19_1029961_+SINEAluAluSx1
CAediting_1270343chr19_1029982_+SINEAluAluSx1
CAediting_1270344chr19_1029991_+SINEAluAluSx1
CAediting_1270347chr19_1030372_+SINEAluAluY
CAediting_1270348chr19_1030511_+SINEAluAluY
CAediting_1270349chr19_1030515_+SINEAluAluY
CAediting_1270350chr19_1030535_+SINEAluAluY
CAediting_1270351chr19_1030626_+SINEAluAluY
CAediting_1270352chr19_1030627_+SINEAluAluY
CAediting_1270353chr19_1030628_+SINEAluAluY
CAediting_1270354chr19_1030665_+LINEL1L1MB4
CAediting_1270355chr19_1031879_+SINEAluAluSx1
CAediting_1270356chr19_1031880_+SINEAluAluSx1
CAediting_1270357chr19_1032013_+SINEAluAluSg
CAediting_1270358chr19_1032018_+SINEAluAluSg
CAediting_1270359chr19_1032108_+SINEAluAluSg
CAediting_1270360chr19_1032791_+SINEAluAluSx1
CAediting_1270361chr19_1032810_+SINEAluAluSx1
CAediting_1270362chr19_1032818_+SINEAluAluSx1
CAediting_1270363chr19_1032829_+SINEAluAluSx1
CAediting_1270364chr19_1032834_+SINEAluAluSx1
CAediting_1270365chr19_1032835_+SINEAluAluSx1
CAediting_1270366chr19_1032843_+SINEAluAluSx1
CAediting_1270367chr19_1032848_+SINEAluAluSx1
CAediting_1270368chr19_1032859_+SINEAluAluSx1
CAediting_1270369chr19_1032865_+SINEAluAluSx1
CAediting_1270370chr19_1032879_+SINEAluAluSx1
CAediting_1270371chr19_1032896_+SINEAluAluSx1
CAediting_1270372chr19_1032908_+SINEAluAluSx1
CAediting_1270373chr19_1032918_+SINEAluAluSx1
CAediting_1270374chr19_1032944_+SINEAluAluSx1
CAediting_1270375chr19_1032953_+SINEAluAluSx1
CAediting_1270376chr19_1032959_+SINEAluAluSx1
CAediting_1270377chr19_1032976_+SINEAluAluSx1
CAediting_1270378chr19_1032979_+SINEAluAluSx1
CAediting_1270379chr19_1032988_+SINEAluAluSx1
CAediting_1270380chr19_1033001_+SINEAluAluSx1
CAediting_1270381chr19_1033013_+SINEAluAluSx1
CAediting_1270382chr19_1033041_+SINEAluAluSx1
CAediting_1270383chr19_1033053_+SINEAluAluSx1
CAediting_1270384chr19_1033055_+SINEAluAluSx1
CAediting_1270385chr19_1033059_+SINEAluAluSx1
CAediting_1270386chr19_1033062_+SINEAluAluSx1
CAediting_1270387chr19_1033229_+LINEL2L2c
CAediting_1270388chr19_1033230_+LINEL2L2c
CAediting_1270389chr19_1033254_+SINEAluAluJo
CAediting_1270390chr19_1033256_+SINEAluAluJo
CAediting_1270391chr19_1033262_+SINEAluAluJo
CAediting_1270392chr19_1033263_+SINEAluAluJo
CAediting_1270393chr19_1033268_+SINEAluAluJo
CAediting_1270394chr19_1033271_+SINEAluAluJo
CAediting_1270395chr19_1033305_+SINEAluAluJo
CAediting_1270396chr19_1033308_+SINEAluAluJo
CAediting_1270397chr19_1033317_+SINEAluAluJo
CAediting_1270398chr19_1033319_+SINEAluAluJo
CAediting_1270399chr19_1033322_+SINEAluAluJo
CAediting_1270400chr19_1033331_+SINEAluAluJo
CAediting_1270401chr19_1033332_+SINEAluAluJo
CAediting_1270402chr19_1033340_+SINEAluAluJo
CAediting_1270403chr19_1033356_+SINEAluAluJo
CAediting_1270404chr19_1033357_+SINEAluAluJo
CAediting_1270405chr19_1033361_+SINEAluAluJo
CAediting_1270406chr19_1033362_+SINEAluAluJo
CAediting_1270407chr19_1033364_+SINEAluAluJo
CAediting_1270408chr19_1033365_+SINEAluAluJo
CAediting_1270409chr19_1033366_+SINEAluAluJo
CAediting_1270410chr19_1033367_+SINEAluAluJo
CAediting_1270411chr19_1033368_+SINEAluAluJo
CAediting_1270412chr19_1033389_+SINEAluAluJo
CAediting_1270413chr19_1033397_+SINEAluAluJo
CAediting_1270414chr19_1033398_+SINEAluAluJo
CAediting_1270415chr19_1033432_+SINEAluAluJo
CAediting_1270416chr19_1033433_+SINEAluAluJo
CAediting_1270417chr19_1033446_+SINEAluAluJo
CAediting_1270418chr19_1033450_+SINEAluAluJo
CAediting_1270419chr19_1033458_+SINEAluAluJo
CAediting_1270420chr19_1033480_+SINEAluAluJo
CAediting_1270421chr19_1033488_+SINEAluAluJo
CAediting_1270422chr19_1033489_+SINEAluAluJo
CAediting_1270423chr19_1035673_+SINEAluAluSz
CAediting_1270424chr19_1035703_+SINEAluAluSz
CAediting_1270425chr19_1035708_+SINEAluAluSz
CAediting_1270426chr19_1035713_+SINEAluAluSz
CAediting_1270427chr19_1035722_+SINEAluAluSz
CAediting_1270428chr19_1035724_+SINEAluAluSz
CAediting_1270429chr19_1035736_+SINEAluAluSz
CAediting_1270430chr19_1035745_+SINEAluAluSz
CAediting_1270431chr19_1035746_+SINEAluAluSz
CAediting_1270432chr19_1035760_+SINEAluAluSz
CAediting_1270433chr19_1035761_+SINEAluAluSz
CAediting_1270434chr19_1035762_+SINEAluAluSz
CAediting_1270435chr19_1035763_+SINEAluAluSz
CAediting_1270436chr19_1035764_+SINEAluAluSz
CAediting_1270437chr19_1035766_+SINEAluAluSz
CAediting_1270438chr19_1035771_+SINEAluAluSz
CAediting_1270439chr19_1035772_+SINEAluAluSz
CAediting_1270440chr19_1035801_+SINEAluAluSz
CAediting_1270441chr19_1035811_+SINEAluAluSz
CAediting_1270442chr19_1035824_+SINEAluAluSz
CAediting_1270443chr19_1035828_+SINEAluAluSz
CAediting_1270444chr19_1035834_+SINEAluAluSz
CAediting_1270445chr19_1035842_+SINEAluAluSz
CAediting_1270446chr19_1035843_+SINEAluAluSz
CAediting_1270447chr19_1035863_+SINEAluAluSz
CAediting_1270448chr19_1035867_+SINEAluAluSz
CAediting_1270449chr19_1035874_+SINEAluAluSz
CAediting_1270450chr19_1035879_+SINEAluAluSz
CAediting_1270451chr19_1035887_+SINEAluAluSz
CAediting_1270452chr19_1035902_+SINEAluAluSz
CAediting_1270453chr19_1035904_+SINEAluAluSz
CAediting_1270454chr19_1035906_+SINEAluAluSz
CAediting_1270455chr19_1035910_+SINEAluAluSz
CAediting_1270456chr19_1036880_+SINEAluAluSx
CAediting_1270457chr19_1036975_+SINEAluAluSx
CAediting_1270458chr19_1036997_+SINEAluAluSx
CAediting_1270459chr19_1036999_+SINEAluAluSx
CAediting_1270460chr19_1037183_+SINEAluAluSx
CAediting_1270461chr19_1037321_+SINEAluAluJb
CAediting_1270462chr19_1037390_+SINEAluAluSx
CAediting_1270463chr19_1037399_+SINEAluAluSx
CAediting_1270464chr19_1037534_+SINEAluAluSx
CAediting_1270465chr19_1037543_+SINEAluAluSx
CAediting_1270466chr19_1038724_+SINEAluAluSq

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RNA A-to-I editing events in the alternative splicing sites for CNN2

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength
ESCAediting_1270456chr19_1036880_+1036858:10368803SS3+0iTATGTATTTATTTTGAGATAGGA-16.26TATGTATTTATTTTGAGATAGGG-16.73
ESCAediting_1270456chr19_1036880_+1036878:10369003SS0+18iGGATCTCACTCTGTTGTCCAGGC-11.17GGGTCTCACTCTGTTGTCCAGGC-10.16
ESCAediting_1270459chr19_1036999_+1036998:10370065SS2+0iCAGGTGCAT4.89CGGGTGCAT0.56
IRCAediting_1270459chr19_1036999_+1036998:10370065SS2+0iCAGGTGCAT4.89CGGGTGCAT0.56

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000064666.13.CNN2.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000064666.13.CNN2.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CNN2

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
STAD.CAediting_1270390.ENSG00000064666.CNN2.png
Soverview

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Protein coding region RNA A-to-I editings for CNN2

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CNN2

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-324-3p103283110328377mer-m810328161032838148.00-23.12
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-4252103283210328387mer-m810328191032839149.00-21.82
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-4793-3p103282810328347mer-m810328131032835153.00-21.03
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-6807-3p103283010328356mer10328141032836158.00-30.24
CAediting_1270362chr19_1032818_+ENSG00000064666.13ENST00000569352hsa-miR-1273c103281310328186mer10327981032819140.00-21.74
CAediting_1270362chr19_1032818_+ENSG00000064666.13ENST00000569352hsa-miR-5708103281510328217mer-m810328051032822151.00-17.91
CAediting_1270366chr19_1032843_+ENSG00000064666.13ENST00000569352hsa-miR-4786-5p103284010328478mer-1a10328281032847149.00-22.27
CAediting_1270367chr19_1032848_+ENSG00000064666.13ENST00000569352hsa-miR-4537103284510328528mer-1a10328291032852154.00-21.70
CAediting_1270368chr19_1032859_+ENSG00000064666.13ENST00000569352hsa-miR-17-3p103285210328587mer-m810328381032859150.00-18.47
CAediting_1270368chr19_1032859_+ENSG00000064666.13ENST00000569352hsa-miR-3929103285610328616mer10328381032862140.00-27.65
CAediting_1270368chr19_1032859_+ENSG00000064666.13ENST00000569352hsa-miR-485-5p103285610328627mer-m810328401032863156.00-19.43
CAediting_1270368chr19_1032859_+ENSG00000064666.13ENST00000569352hsa-miR-6884-5p103285610328627mer-m810328401032863154.00-24.34
CAediting_1270369chr19_1032865_+ENSG00000064666.13ENST00000569352hsa-miR-4785103286210328687mer-m810328491032869142.00-16.45
CAediting_1270370chr19_1032879_+ENSG00000064666.13ENST00000569352hsa-miR-4539103287310328786mer10328601032879145.00-20.67
CAediting_1270370chr19_1032879_+ENSG00000064666.13ENST00000569352hsa-miR-6078103287510328828mer-1a10328641032882149.00-21.50
CAediting_1270372chr19_1032908_+ENSG00000064666.13ENST00000569352hsa-miR-4691-3p103290510329117mer-m810328851032912151.00-28.98
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000348419hsa-miR-25-5p103871910387268mer-1a10387051038726152.00-21.95
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000348419hsa-miR-4730103872010387267mer-m810387051038727157.00-24.04
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000565096hsa-miR-25-5p103871910387268mer-1a10387051038726152.00-21.95
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000565096hsa-miR-4730103872010387267mer-m810387051038727157.00-24.04
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000562958hsa-miR-25-5p103871910387268mer-1a10387051038726152.00-21.95
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000562958hsa-miR-4730103872010387267mer-m810387051038727157.00-24.04

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000348419hsa-miR-6880-5p103871910387268mer-1a10387051038726142-23.92
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000565096hsa-miR-6880-5p103871910387268mer-1a10387051038726142-23.92
CAediting_1270367chr19_1032848_+ENSG00000064666.13ENST00000569352hsa-miR-3160-3p103284510328528mer-1a10328311032852153-19.05
CAediting_1270367chr19_1032848_+ENSG00000064666.13ENST00000569352hsa-miR-3160-3p103284510328528mer-1a10328311032852153-19.05
CAediting_1270364chr19_1032834_+ENSG00000064666.13ENST00000569352hsa-miR-32-5p103282910328357mer-m810328131032836153-14.3
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-32-5p103282910328357mer-m810328131032836153-14.3
CAediting_1270364chr19_1032834_+ENSG00000064666.13ENST00000569352hsa-miR-363-3p103282910328357mer-m810328151032836147-16.59
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-363-3p103282910328357mer-m810328151032836147-16.59
CAediting_1270368chr19_1032859_+ENSG00000064666.13ENST00000569352hsa-miR-377-5p103285610328627mer-m810328401032863154-17.48
CAediting_1270363chr19_1032829_+ENSG00000064666.13ENST00000569352hsa-miR-3925-3p103282410328296mer10328101032830142-17.58
CAediting_1270369chr19_1032865_+ENSG00000064666.13ENST00000569352hsa-miR-4259103286210328676mer10328471032868140-14.46
CAediting_1270371chr19_1032896_+ENSG00000064666.13ENST00000569352hsa-miR-4463103289410328996mer10328841032900143-24.58
CAediting_1270371chr19_1032896_+ENSG00000064666.13ENST00000569352hsa-miR-4499103289310328997mer-m810328821032900154-20.16
CAediting_1270371chr19_1032896_+ENSG00000064666.13ENST00000569352hsa-miR-4649-3p103289010328967mer-m810328771032897140-12.86
CAediting_1270362chr19_1032818_+ENSG00000064666.13ENST00000569352hsa-miR-4758-5p103281610328216mer10328021032822146-26.04
CAediting_1270363chr19_1032829_+ENSG00000064666.13ENST00000569352hsa-miR-508-5p103282410328307mer-m810328091032831150-18.86
CAediting_1270372chr19_1032908_+ENSG00000064666.13ENST00000569352hsa-miR-5690103290510329117mer-m810328921032912145-16.75
CAediting_1270366chr19_1032843_+ENSG00000064666.13ENST00000569352hsa-miR-5694103284010328456mer10328251032846142-15.85
CAediting_1270369chr19_1032865_+ENSG00000064666.13ENST00000569352hsa-miR-571103286210328687mer-m810328491032869148-18.9
CAediting_1270368chr19_1032859_+ENSG00000064666.13ENST00000569352hsa-miR-6086103285610328627mer-m810328441032863150-23.6
CAediting_1270363chr19_1032829_+ENSG00000064666.13ENST00000569352hsa-miR-6512-3p103282210328287mer-m810328081032829142-19.67
CAediting_1270368chr19_1032859_+ENSG00000064666.13ENST00000569352hsa-miR-6516-5p103285210328587mer-m810328401032859148-12.72
CAediting_1270363chr19_1032829_+ENSG00000064666.13ENST00000569352hsa-miR-6720-5p103282210328287mer-m810328081032829148-22.3
CAediting_1270371chr19_1032896_+ENSG00000064666.13ENST00000569352hsa-miR-6857-3p103289210328987mer-m810328791032899140-10.96
CAediting_1270361chr19_1032810_+ENSG00000064666.13ENST00000569352hsa-miR-6864-3p103280310328097mer-m810327891032810149-20.06
CAediting_1270367chr19_1032848_+ENSG00000064666.13ENST00000569352hsa-miR-7160-5p103284410328496mer10328311032850140-20.08
CAediting_1270371chr19_1032896_+ENSG00000064666.13ENST00000569352hsa-miR-7162-3p103289110328966mer10328791032897143-17.78
CAediting_1270361chr19_1032810_+ENSG00000064666.13ENST00000569352hsa-miR-759103280810328147mer-m810327951032815143-18.87
CAediting_1270363chr19_1032829_+ENSG00000064666.13ENST00000569352hsa-miR-766-3p103282310328297mer-m810328091032830145-21.44
CAediting_1270371chr19_1032896_+ENSG00000064666.13ENST00000569352hsa-miR-873-3p103289410329007mer-m810328791032901148-19.73
CAediting_1270364chr19_1032834_+ENSG00000064666.13ENST00000569352hsa-miR-92a-3p103282910328357mer-m810328191032836155-27.39
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-92a-3p103282910328357mer-m810328191032836155-27.39
CAediting_1270364chr19_1032834_+ENSG00000064666.13ENST00000569352hsa-miR-92a-3p103282910328357mer-m810328191032836155-27.39
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-92a-3p103282910328357mer-m810328191032836155-27.39
CAediting_1270364chr19_1032834_+ENSG00000064666.13ENST00000569352hsa-miR-92b-3p103282910328357mer-m810328191032836155-23.65
CAediting_1270365chr19_1032835_+ENSG00000064666.13ENST00000569352hsa-miR-92b-3p103282910328357mer-m810328191032836155-23.65
CAediting_1270466chr19_1038724_+ENSG00000064666.13ENST00000562958hsa-miR-6880-5p103871910387268mer-1a10387051038726142-23.92

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_77128chr1_85133844_+ENSG00000064666.13ENST00000348419hsa-miR-4423-3p103886310388697mer-m810388501038870140-15.1
CAediting_77128chr1_85133844_+ENSG00000064666.13ENST00000565096hsa-miR-4423-3p103886310388697mer-m810388501038870140-15.1
CAediting_86358chr1_109598906_+ENSG00000064666.13ENST00000569352hsa-miR-197-5p103760210376087mer-m810375841037609166-31.14
CAediting_77128chr1_85133844_+ENSG00000064666.13ENST00000562958hsa-miR-4423-3p103886310388697mer-m810388501038870140-15.1
CAediting_468389chr6_31355314_-ENSG00000064666.13ENST00000348419hsa-miR-6891-5p103890110389077mer-m810388921038908146-28
CAediting_468389chr6_31355314_-ENSG00000064666.13ENST00000565096hsa-miR-6891-5p103890110389077mer-m810388921038908146-28
CAediting_468389chr6_31355314_-ENSG00000064666.13ENST00000562958hsa-miR-6891-5p103890110389077mer-m810388921038908146-28

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CNN2

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for CNN2

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for CNN2

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CNN2

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CNN2

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CNN2

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource
CNN2C0007134Renal Cell Carcinoma1CTD_human
CNN2C0279702Conventional (Clear Cell) Renal Cell Carcinoma1CTD_human
CNN2C1266042Chromophobe Renal Cell Carcinoma1CTD_human
CNN2C1266043Sarcomatoid Renal Cell Carcinoma1CTD_human
CNN2C1266044Collecting Duct Carcinoma of the Kidney1CTD_human
CNN2C1306837Papillary Renal Cell Carcinoma1CTD_human