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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: CCDC159 (CAeditome ID:126075)

Gene summary for CCDC159

check button Gene summary
Gene informationGene symbol

CCDC159

Gene ID

126075

Gene namecoiled-coil domain containing 159
Synonyms-
Cytomap

19p13.2

Type of geneprotein-coding
Descriptioncoiled-coil domain-containing protein 159
Modification date20210518
UniProtAcc

P0C7I6

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for CCDC159

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000183401.10

check button RNA A-to-I editing events in Cancer.
CAediting_1296602(11351182, +), CAediting_1296603(11351199, +), CAediting_1296604(11351227, +), CAediting_1296605(11351236, +), CAediting_1296606(11351251, +), CAediting_1296607(11351281, +), CAediting_1296608(11351290, +), CAediting_1296609(11351294, +), CAediting_1296610(11351369, +), CAediting_1296611(11352360, +), CAediting_1296612(11352361, +), CAediting_1296613(11352366, +), CAediting_1296614(11352369, +), CAediting_1296615(11352405, +), CAediting_1296616(11352407, +), CAediting_1296617(11352420, +), CAediting_1296618(11352429, +), CAediting_1296619(11352430, +), CAediting_1296620(11352445, +), CAediting_1296621(11352448, +), CAediting_1296622(11352450, +), CAediting_1296623(11352453, +), CAediting_1296624(11352454, +), CAediting_1296625(11352475, +), CAediting_1296626(11352479, +), CAediting_1296627(11352485, +), CAediting_1296628(11352486, +), CAediting_1296629(11352495, +), CAediting_1296630(11352499, +), CAediting_1296631(11352518, +), CAediting_1296632(11352526, +), CAediting_1296633(11352527, +), CAediting_1296634(11352531, +), CAediting_1296635(11352538, +), CAediting_1296636(11352545, +), CAediting_1296637(11352557, +), CAediting_1296638(11352558, +), CAediting_1296639(11352676, +), CAediting_1296640(11352684, +), CAediting_1296641(11352692, +), CAediting_1296642(11352721, +), CAediting_1296643(11352724, +), CAediting_1296644(11352730, +), CAediting_1296645(11352735, +), CAediting_1296646(11352740, +), CAediting_1296647(11352752, +), CAediting_1296648(11352753, +), CAediting_1296649(11352755, +), CAediting_1296650(11352766, +), CAediting_1296651(11352776, +), CAediting_1296652(11352777, +), CAediting_1296653(11352802, +), CAediting_1296654(11352810, +), CAediting_1296655(11352812, +), CAediting_1296656(11352820, +), CAediting_1296657(11352824, +), CAediting_1296658(11352826, +), CAediting_1296659(11352833, +), CAediting_1296660(11352837, +), CAediting_1296661(11352846, +), CAediting_1296662(11352851, +), CAediting_1296663(11352885, +), CAediting_1296664(11352891, +), CAediting_1296665(11352913, +), CAediting_1296666(11353125, +), CAediting_1296667(11353157, +), CAediting_1296668(11353175, +), CAediting_1296669(11353201, +), CAediting_1296670(11353204, +), CAediting_1296671(11353205, +), CAediting_1296672(11353230, +), CAediting_1296673(11353282, +), CAediting_1296674(11353285, +), CAediting_1296675(11353287, +), CAediting_1296676(11353299, +), CAediting_1296677(11353307, +), CAediting_1296678(11353311, +), CAediting_1296679(11353361, +), CAediting_1296680(11353362, +), CAediting_1296681(11353374, +),

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RNA editing positional annotations for CCDC159 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1296602chr19_11351182_+ncRNA_exonic
CAediting_1296603chr19_11351199_+ncRNA_exonic
CAediting_1296604chr19_11351227_+ncRNA_exonic
CAediting_1296605chr19_11351236_+ncRNA_exonic
CAediting_1296606chr19_11351251_+ncRNA_exonic
CAediting_1296607chr19_11351281_+ncRNA_exonic
CAediting_1296608chr19_11351290_+ncRNA_exonic
CAediting_1296609chr19_11351294_+ncRNA_exonic
CAediting_1296610chr19_11351369_+ncRNA_exonic
CAediting_1296611chr19_11352360_+ncRNA_exonic
CAediting_1296612chr19_11352361_+ncRNA_exonic
CAediting_1296613chr19_11352366_+ncRNA_exonic
CAediting_1296614chr19_11352369_+ncRNA_exonic
CAediting_1296615chr19_11352405_+ncRNA_exonic
CAediting_1296616chr19_11352407_+ncRNA_exonic
CAediting_1296617chr19_11352420_+ncRNA_exonic
CAediting_1296618chr19_11352429_+ncRNA_exonic
CAediting_1296619chr19_11352430_+ncRNA_exonic
CAediting_1296620chr19_11352445_+ncRNA_exonic
CAediting_1296621chr19_11352448_+ncRNA_exonic
CAediting_1296622chr19_11352450_+ncRNA_exonic
CAediting_1296623chr19_11352453_+ncRNA_exonic
CAediting_1296624chr19_11352454_+ncRNA_exonic
CAediting_1296625chr19_11352475_+ncRNA_exonic
CAediting_1296626chr19_11352479_+ncRNA_exonic
CAediting_1296627chr19_11352485_+ncRNA_exonic
CAediting_1296628chr19_11352486_+ncRNA_exonic
CAediting_1296629chr19_11352495_+ncRNA_exonic
CAediting_1296630chr19_11352499_+ncRNA_exonic
CAediting_1296631chr19_11352518_+ncRNA_intronic
CAediting_1296632chr19_11352526_+ncRNA_intronic
CAediting_1296633chr19_11352527_+ncRNA_intronic
CAediting_1296634chr19_11352531_+ncRNA_intronic
CAediting_1296635chr19_11352538_+ncRNA_intronic
CAediting_1296636chr19_11352545_+ncRNA_intronic
CAediting_1296637chr19_11352557_+ncRNA_intronic
CAediting_1296638chr19_11352558_+ncRNA_intronic
CAediting_1296639chr19_11352676_+ncRNA_intronic
CAediting_1296640chr19_11352684_+ncRNA_intronic
CAediting_1296641chr19_11352692_+ncRNA_intronic
CAediting_1296642chr19_11352721_+ncRNA_intronic
CAediting_1296643chr19_11352724_+ncRNA_intronic
CAediting_1296644chr19_11352730_+ncRNA_intronic
CAediting_1296645chr19_11352735_+ncRNA_intronic
CAediting_1296646chr19_11352740_+ncRNA_intronic
CAediting_1296647chr19_11352752_+ncRNA_intronic
CAediting_1296648chr19_11352753_+ncRNA_intronic
CAediting_1296649chr19_11352755_+ncRNA_intronic
CAediting_1296650chr19_11352766_+ncRNA_intronic
CAediting_1296651chr19_11352776_+ncRNA_intronic
CAediting_1296652chr19_11352777_+ncRNA_intronic
CAediting_1296653chr19_11352802_+ncRNA_intronic
CAediting_1296654chr19_11352810_+ncRNA_intronic
CAediting_1296655chr19_11352812_+ncRNA_intronic
CAediting_1296656chr19_11352820_+ncRNA_intronic
CAediting_1296657chr19_11352824_+ncRNA_intronic
CAediting_1296658chr19_11352826_+ncRNA_intronic
CAediting_1296659chr19_11352833_+ncRNA_intronic
CAediting_1296660chr19_11352837_+ncRNA_intronic
CAediting_1296661chr19_11352846_+ncRNA_intronic
CAediting_1296662chr19_11352851_+ncRNA_intronic
CAediting_1296663chr19_11352885_+ncRNA_intronic
CAediting_1296664chr19_11352891_+ncRNA_intronic
CAediting_1296665chr19_11352913_+ncRNA_intronic
CAediting_1296666chr19_11353125_+ncRNA_intronic
CAediting_1296667chr19_11353157_+ncRNA_intronic
CAediting_1296668chr19_11353175_+ncRNA_intronic
CAediting_1296669chr19_11353201_+ncRNA_intronic
CAediting_1296670chr19_11353204_+ncRNA_intronic
CAediting_1296671chr19_11353205_+ncRNA_intronic
CAediting_1296672chr19_11353230_+ncRNA_intronic
CAediting_1296673chr19_11353282_+ncRNA_intronic
CAediting_1296674chr19_11353285_+ncRNA_intronic
CAediting_1296675chr19_11353287_+ncRNA_intronic
CAediting_1296676chr19_11353299_+ncRNA_intronic
CAediting_1296677chr19_11353307_+ncRNA_intronic
CAediting_1296678chr19_11353311_+ncRNA_intronic
CAediting_1296679chr19_11353361_+ncRNA_intronic
CAediting_1296680chr19_11353362_+ncRNA_intronic
CAediting_1296681chr19_11353374_+ncRNA_intronic

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1296602chr19_11351182_+SINEAluAluSx1
CAediting_1296603chr19_11351199_+SINEAluAluSx1
CAediting_1296604chr19_11351227_+SINEAluAluSx1
CAediting_1296605chr19_11351236_+SINEAluAluSx1
CAediting_1296606chr19_11351251_+SINEAluAluSx1
CAediting_1296607chr19_11351281_+SINEAluAluSx1
CAediting_1296608chr19_11351290_+SINEAluAluSx1
CAediting_1296609chr19_11351294_+SINEAluAluSx1
CAediting_1296610chr19_11351369_+SINEAluAluSx1
CAediting_1296611chr19_11352360_+SINEAluAluSq2
CAediting_1296612chr19_11352361_+SINEAluAluSq2
CAediting_1296613chr19_11352366_+SINEAluAluSq2
CAediting_1296614chr19_11352369_+SINEAluAluSq2
CAediting_1296615chr19_11352405_+SINEAluAluSq2
CAediting_1296616chr19_11352407_+SINEAluAluSq2
CAediting_1296617chr19_11352420_+SINEAluAluSq2
CAediting_1296618chr19_11352429_+SINEAluAluSq2
CAediting_1296619chr19_11352430_+SINEAluAluSq2
CAediting_1296620chr19_11352445_+SINEAluAluSq2
CAediting_1296621chr19_11352448_+SINEAluAluSq2
CAediting_1296622chr19_11352450_+SINEAluAluSq2
CAediting_1296623chr19_11352453_+SINEAluAluSq2
CAediting_1296624chr19_11352454_+SINEAluAluSq2
CAediting_1296625chr19_11352475_+SINEAluAluSq2
CAediting_1296626chr19_11352479_+SINEAluAluSq2
CAediting_1296627chr19_11352485_+SINEAluAluSq2
CAediting_1296628chr19_11352486_+SINEAluAluSq2
CAediting_1296629chr19_11352495_+SINEAluAluSq2
CAediting_1296630chr19_11352499_+SINEAluAluSq2
CAediting_1296631chr19_11352518_+SINEAluAluSq2
CAediting_1296632chr19_11352526_+SINEAluAluSq2
CAediting_1296633chr19_11352527_+SINEAluAluSq2
CAediting_1296634chr19_11352531_+SINEAluAluSq2
CAediting_1296635chr19_11352538_+SINEAluAluSq2
CAediting_1296636chr19_11352545_+SINEAluAluSq2
CAediting_1296637chr19_11352557_+SINEAluAluSq2
CAediting_1296638chr19_11352558_+SINEAluAluSq2
CAediting_1296639chr19_11352676_+SINEAluAluJb
CAediting_1296640chr19_11352684_+SINEAluAluJb
CAediting_1296641chr19_11352692_+SINEAluAluJb
CAediting_1296642chr19_11352721_+SINEAluAluJb
CAediting_1296643chr19_11352724_+SINEAluAluJb
CAediting_1296644chr19_11352730_+SINEAluAluJb
CAediting_1296645chr19_11352735_+SINEAluAluJb
CAediting_1296646chr19_11352740_+SINEAluAluJb
CAediting_1296647chr19_11352752_+SINEAluAluJb
CAediting_1296648chr19_11352753_+SINEAluAluJb
CAediting_1296649chr19_11352755_+SINEAluAluJb
CAediting_1296650chr19_11352766_+SINEAluAluJb
CAediting_1296651chr19_11352776_+SINEAluAluJb
CAediting_1296652chr19_11352777_+SINEAluAluJb
CAediting_1296653chr19_11352802_+SINEAluAluJb
CAediting_1296654chr19_11352810_+SINEAluAluJb
CAediting_1296655chr19_11352812_+SINEAluAluJb
CAediting_1296656chr19_11352820_+SINEAluAluJb
CAediting_1296657chr19_11352824_+SINEAluAluJb
CAediting_1296658chr19_11352826_+SINEAluAluJb
CAediting_1296659chr19_11352833_+SINEAluAluJb
CAediting_1296660chr19_11352837_+SINEAluAluJb
CAediting_1296661chr19_11352846_+SINEAluAluJb
CAediting_1296662chr19_11352851_+SINEAluAluJb
CAediting_1296663chr19_11352885_+SINEAluAluJb
CAediting_1296664chr19_11352891_+SINEAluAluJb
CAediting_1296665chr19_11352913_+SINEAluAluJb
CAediting_1296666chr19_11353125_+SINEAluAluSc8
CAediting_1296667chr19_11353157_+SINEAluAluSc8
CAediting_1296668chr19_11353175_+SINEAluAluSc8
CAediting_1296669chr19_11353201_+SINEAluAluSc8
CAediting_1296670chr19_11353204_+SINEAluAluSc8
CAediting_1296671chr19_11353205_+SINEAluAluSc8
CAediting_1296672chr19_11353230_+SINEAluAluSc8
CAediting_1296673chr19_11353282_+SINEAluAluSc8
CAediting_1296674chr19_11353285_+SINEAluAluSc8
CAediting_1296675chr19_11353287_+SINEAluAluSc8
CAediting_1296676chr19_11353299_+SINEAluAluSc8
CAediting_1296677chr19_11353307_+SINEAluAluSc8
CAediting_1296678chr19_11353311_+SINEAluAluSc8
CAediting_1296679chr19_11353361_+SINEAluAluSc8
CAediting_1296680chr19_11353362_+SINEAluAluSc8
CAediting_1296681chr19_11353374_+SINEAluAluSc8

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RNA A-to-I editing events in the alternative splicing sites for CCDC159

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000183401.10.CCDC159.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000183401.10.CCDC159.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for CCDC159

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.
boxplot

check button Correlation between RNA A-to-I editing and gene expression.
boxplot

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.
LAML.CAediting_1296661.ENSG00000183401.CCDC159.png
Soverview

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Protein coding region RNA A-to-I editings for CCDC159

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.


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The effects of the RNA editing to the miRNA binding sites for CCDC159

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1368054chr19_46709310_-ENSG00000183401.10ENST00000590636hsa-miR-320e11349667113496726mer1134965611349673143-19.03
CAediting_468389chr6_31355314_-ENSG00000183401.10ENST00000588790hsa-miR-6891-5p11354935113549417mer-m81135492411354942145-23.04
CAediting_1524209chrX_134546392_-ENSG00000183401.10ENST00000590636hsa-miR-503-5p11350965113509717mer-m81135094711350972148-24.51
CAediting_468389chr6_31355314_-ENSG00000183401.10ENST00000591691hsa-miR-6891-5p11354935113549417mer-m81135492411354942145-23.04

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for CCDC159

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for CCDC159

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for CCDC159

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for CCDC159

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for CCDC159

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for CCDC159

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource