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Center for Computational Systems Medicine
Soverview

Gene summary

Soverview

RNA A-to-I events

Soverview

Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples

Soverview

Protein coding region RNA A-to-I editings

Soverview

The effects of the RNA editing to the miRNA binding sites

Soverview

The effects of the RNA editing to the stability of the RNA structures

Soverview

Relation with ADAR

Soverview

Relation with cancer stages

Soverview

Relation with survival state

Soverview

Related drugs with this gene

Soverview

Related diseases with this gene

Editing gene: ZNF441 (CAeditome ID:126068)

Gene summary for ZNF441

check button Gene summary
Gene informationGene symbol

ZNF441

Gene ID

126068

Gene namezinc finger protein 441
Synonyms-
Cytomap

19p13.2

Type of geneprotein-coding
Descriptionzinc finger protein 441
Modification date20210518
UniProtAcc

Q8N8Z8

Context

check button Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez
GeneGO IDGO termPubMed ID

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RNA A-to-I events for ZNF441

check buttonRNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.
all structure

check button RNA editing frequencies across 33 cancers of gene: ENSG00000197044.9

check button RNA A-to-I editing events in Cancer.
CAediting_1298501(11772496, +), CAediting_1298502(11772510, +), CAediting_1298503(11772514, +), CAediting_1298504(11772515, +), CAediting_1298505(11772522, +), CAediting_1298506(11772531, +), CAediting_1298507(11772538, +), CAediting_1298508(11772921, +), CAediting_1298509(11772967, +), CAediting_1298510(11772982, +), CAediting_1298511(11777683, +), CAediting_1298512(11778490, +), CAediting_1298513(11779083, +), CAediting_1298514(11779634, +), CAediting_1298515(11782894, +), CAediting_1298516(11783175, +), CAediting_1298517(11783176, +), CAediting_1298518(11783178, +), CAediting_1298519(11783190, +), CAediting_1298520(11783224, +), CAediting_1298521(11783342, +), CAediting_1298522(11783346, +), CAediting_1298523(11783370, +), CAediting_1298524(11783386, +), CAediting_1298525(11783392, +), CAediting_1298526(11783394, +), CAediting_1298527(11783478, +), CAediting_1298528(11783502, +), CAediting_1298529(11783507, +), CAediting_1298530(11783571, +), CAediting_1298531(11783610, +), CAediting_1298532(11783644, +), CAediting_1298533(11783649, +), CAediting_1298534(11783667, +), CAediting_1298535(11783901, +),

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RNA editing positional annotations for ZNF441 using Annovar

check button Protein coding RNA editing(s).
CAeditome IDPositionVariant typeENSTNTchangeAAchangeSIFT_scorePolyphen2_HVAR_scorePROVEAN_pred
CAediting_1298511chr19_11777683_+nonsynonymous SNVENST00000357901.4c.A76Gp.K26EDBD
CAediting_1298511chr19_11777683_+nonsynonymous SNVENST00000409902.4c.A76Gp.K26EDBD

check button Gene structure information of RNA editing(s).
CAeditome IDPositionVariant type
CAediting_1298501chr19_11772496_+ncRNA_intronic
CAediting_1298502chr19_11772510_+ncRNA_intronic
CAediting_1298503chr19_11772514_+ncRNA_intronic
CAediting_1298504chr19_11772515_+ncRNA_intronic
CAediting_1298505chr19_11772522_+ncRNA_intronic
CAediting_1298506chr19_11772531_+ncRNA_intronic
CAediting_1298507chr19_11772538_+ncRNA_intronic
CAediting_1298508chr19_11772921_+ncRNA_intronic
CAediting_1298509chr19_11772967_+ncRNA_intronic
CAediting_1298510chr19_11772982_+ncRNA_intronic
CAediting_1298511chr19_11777683_+exonic
CAediting_1298512chr19_11778490_+intronic
CAediting_1298513chr19_11779083_+intronic
CAediting_1298514chr19_11779634_+intronic
CAediting_1298515chr19_11782894_+UTR3
CAediting_1298516chr19_11783175_+UTR3
CAediting_1298517chr19_11783176_+UTR3
CAediting_1298518chr19_11783178_+UTR3
CAediting_1298519chr19_11783190_+UTR3
CAediting_1298520chr19_11783224_+UTR3
CAediting_1298521chr19_11783342_+UTR3
CAediting_1298522chr19_11783346_+UTR3
CAediting_1298523chr19_11783370_+UTR3
CAediting_1298524chr19_11783386_+UTR3
CAediting_1298525chr19_11783392_+UTR3
CAediting_1298526chr19_11783394_+UTR3
CAediting_1298527chr19_11783478_+UTR3
CAediting_1298528chr19_11783502_+UTR3
CAediting_1298529chr19_11783507_+UTR3
CAediting_1298530chr19_11783571_+UTR3
CAediting_1298531chr19_11783610_+UTR3
CAediting_1298532chr19_11783644_+UTR3
CAediting_1298533chr19_11783649_+UTR3
CAediting_1298534chr19_11783667_+UTR3
CAediting_1298535chr19_11783901_+UTR3

check button Repat-regional RNA editing(s).
CAeditome IDPositionRepeat familyRepeat sub familyRepeat name
CAediting_1298501chr19_11772496_+LINEL1L1MB4
CAediting_1298502chr19_11772510_+LINEL1L1MB4
CAediting_1298503chr19_11772514_+LINEL1L1MB4
CAediting_1298504chr19_11772515_+LINEL1L1MB4
CAediting_1298505chr19_11772522_+LINEL1L1MB4
CAediting_1298506chr19_11772531_+LINEL1L1MB4
CAediting_1298507chr19_11772538_+LINEL1L1MB4
CAediting_1298508chr19_11772921_+SINEAluAluY
CAediting_1298509chr19_11772967_+SINEAluAluY
CAediting_1298510chr19_11772982_+SINEAluAluY
CAediting_1298512chr19_11778490_+SINEAluAluJr4
CAediting_1298513chr19_11779083_+SINEAluAluJo
CAediting_1298514chr19_11779634_+SINEAluAluY
CAediting_1298515chr19_11782894_+LINEL1L1MA4A
CAediting_1298516chr19_11783175_+LINEL1L1MA4A
CAediting_1298517chr19_11783176_+LINEL1L1MA4A
CAediting_1298518chr19_11783178_+LINEL1L1MA4A
CAediting_1298519chr19_11783190_+LINEL1L1MA4A
CAediting_1298520chr19_11783224_+LINEL1L1MA4A
CAediting_1298521chr19_11783342_+LINEL1L1MA4A
CAediting_1298522chr19_11783346_+LINEL1L1MA4A
CAediting_1298523chr19_11783370_+LINEL1L1MA4A
CAediting_1298524chr19_11783386_+LINEL1L1MA4A
CAediting_1298525chr19_11783392_+LINEL1L1MA4A
CAediting_1298526chr19_11783394_+LINEL1L1MA4A
CAediting_1298527chr19_11783478_+LINEL1L1MA4A
CAediting_1298528chr19_11783502_+LINEL1L1MA4A
CAediting_1298529chr19_11783507_+LINEL1L1MA4A
CAediting_1298530chr19_11783571_+LINEL1L1MA4A
CAediting_1298531chr19_11783610_+LINEL1L1MA4A
CAediting_1298532chr19_11783644_+LINEL1L1MA4A
CAediting_1298533chr19_11783649_+LINEL1L1MA4A
CAediting_1298534chr19_11783667_+LINEL1L1MA4A
CAediting_1298535chr19_11783901_+LINEL1L1MA4A

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RNA A-to-I editing events in the alternative splicing sites for ZNF441

check button RNA A-to-I editing(s) in the alternative splicing sites.
AStypeCAeditomIDEditing positionAS positionAS directionExonic locationWildtype sequenceWildtype splicing strengthRNA edited sequenceRNA edited splicing strength

check button Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000197044.9.ZNF441.

check button Correlation between RNA A-to-I editing and PSI for ENSG00000197044.9.ZNF441.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for ZNF441

check button Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

check button Correlation between RNA A-to-I editing and gene expression.

check button - Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for ZNF441

check button- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.
all structure


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The effects of the RNA editing to the miRNA binding sites for ZNF441

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

check button RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1298515chr19_11782894_+ENSG00000197044.9ENST00000357901hsa-miR-1915-5p11782888117828958mer-1a1178287411782895145.00-21.22
CAediting_1298515chr19_11782894_+ENSG00000197044.9ENST00000357901hsa-miR-362-5p11782890117828967mer-m81178287011782897156.00-18.14
CAediting_1298515chr19_11782894_+ENSG00000197044.9ENST00000357901hsa-miR-500a-5p11782891117828977mer-m81178287511782898155.00-18.41
CAediting_1298515chr19_11782894_+ENSG00000197044.9ENST00000357901hsa-miR-500b-5p11782890117828967mer-m81178288011782897146.00-15.76
CAediting_1298515chr19_11782894_+ENSG00000197044.9ENST00000357901hsa-miR-502-5p11782889117828957mer-m81178287511782896145.00-16.07
CAediting_1298518chr19_11783178_+ENSG00000197044.9ENST00000357901hsa-miR-9-5p11783172117831787mer-1a1178315611783178146.00-19.67
CAediting_1298518chr19_11783178_+ENSG00000197044.9ENST00000357901hsa-miR-9-5p11783172117831787mer-1a1178315611783178146.00-19.67
CAediting_1298518chr19_11783178_+ENSG00000197044.9ENST00000357901hsa-miR-9-5p11783172117831787mer-1a1178315611783178146.00-19.67
CAediting_1298519chr19_11783190_+ENSG00000197044.9ENST00000357901hsa-miR-1-5p11783187117831937mer-m81178317311783194164.00-17.19
CAediting_1298523chr19_11783370_+ENSG00000197044.9ENST00000357901hsa-miR-120811783363117833697mer-m81178335011783370142.00-14.47
CAediting_1298523chr19_11783370_+ENSG00000197044.9ENST00000357901hsa-miR-394111783367117833737mer-m81178335311783374140.00-12.82
CAediting_1298523chr19_11783370_+ENSG00000197044.9ENST00000357901hsa-miR-60311783366117833738mer-1a1178335211783373145.00-13.03
CAediting_1298529chr19_11783507_+ENSG00000197044.9ENST00000357901hsa-miR-362-5p11783503117835108mer-1a1178348511783510147.00-13.41
CAediting_1298529chr19_11783507_+ENSG00000197044.9ENST00000357901hsa-miR-500b-5p11783503117835108mer-1a1178349211783510151.00-11.62
CAediting_1298531chr19_11783610_+ENSG00000197044.9ENST00000357901hsa-miR-196a-1-3p11783605117836117mer-m81178359211783612154.00-13.63
CAediting_1298532chr19_11783644_+ENSG00000197044.9ENST00000357901hsa-miR-10523-5p11783638117836447mer-m81178362211783645148.00-12.66
CAediting_1298533chr19_11783649_+ENSG00000197044.9ENST00000357901hsa-miR-6511a-3p11783644117836507mer-m81178363011783651145.00-15.65
CAediting_1298533chr19_11783649_+ENSG00000197044.9ENST00000357901hsa-miR-6511a-3p11783644117836507mer-m81178363011783651145.00-15.65
CAediting_1298533chr19_11783649_+ENSG00000197044.9ENST00000357901hsa-miR-6511a-3p11783644117836507mer-m81178363011783651145.00-15.65
CAediting_1298533chr19_11783649_+ENSG00000197044.9ENST00000357901hsa-miR-6511a-3p11783644117836507mer-m81178363011783651145.00-15.65
CAediting_1298533chr19_11783649_+ENSG00000197044.9ENST00000357901hsa-miR-6511b-3p11783644117836507mer-m81178362911783651140.00-13.98
CAediting_1298533chr19_11783649_+ENSG00000197044.9ENST00000357901hsa-miR-6511b-3p11783644117836507mer-m81178362911783651140.00-13.98
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-191-3p11783664117836707mer-1a1178364611783670149.00-24.40
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-6720-3p11783661117836688mer-1a1178364711783668140.00-13.73
CAediting_1298535chr19_11783901_+ENSG00000197044.9ENST00000357901hsa-miR-428711783897117839037mer-m81178388611783904145.00-17.88
CAediting_1298535chr19_11783901_+ENSG00000197044.9ENST00000357901hsa-miR-4685-3p11783897117839037mer-m81178388311783904153.00-21.77
CAediting_1298535chr19_11783901_+ENSG00000197044.9ENST00000357901hsa-miR-6749-3p11783899117839057mer-m81178388611783906144.00-17.20
CAediting_1298517chr19_11783176_+ENSG00000197044.9ENST00000357901hsa-miR-3190-5p11783169117831768mer-1a1178315711783176147.00-18.15

check button RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1298535chr19_11783901_+ENSG00000197044.9ENST00000357901hsa-miR-1236-3p11783895117839028mer-1a1178388111783902144-12.73
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-1271-3p11783661117836688mer-1a1178364711783668150-15.31
CAediting_1298535chr19_11783901_+ENSG00000197044.9ENST00000357901hsa-miR-318311783898117839058mer-1a1178388411783905146-16.66
CAediting_1298516chr19_11783175_+ENSG00000197044.9ENST00000357901hsa-miR-3187-3p11783168117831758mer-1a1178315611783175143-17.55
CAediting_1298524chr19_11783386_+ENSG00000197044.9ENST00000357901hsa-miR-329-5p11783383117833908mer-1a1178336811783390152-15.69
CAediting_1298524chr19_11783386_+ENSG00000197044.9ENST00000357901hsa-miR-329-5p11783383117833908mer-1a1178336811783390152-15.69
CAediting_1298520chr19_11783224_+ENSG00000197044.9ENST00000357901hsa-miR-3680-3p11783219117832257mer-m81178320411783226148-15.05
CAediting_1298520chr19_11783224_+ENSG00000197044.9ENST00000357901hsa-miR-3680-3p11783219117832257mer-m81178320411783226148-15.05
CAediting_1298531chr19_11783610_+ENSG00000197044.9ENST00000357901hsa-miR-3942-5p11783608117836158mer-1a1178359111783615150-10.72
CAediting_1298531chr19_11783610_+ENSG00000197044.9ENST00000357901hsa-miR-4703-5p11783608117836158mer-1a1178359211783615143-12.5
CAediting_1298535chr19_11783901_+ENSG00000197044.9ENST00000357901hsa-miR-4723-3p11783898117839058mer-1a1178388411783905145-14.73
CAediting_1298521chr19_11783342_+ENSG00000197044.9ENST00000357901hsa-miR-4735-5p11783340117833478mer-1a1178332811783347152-9.84
CAediting_1298522chr19_11783346_+ENSG00000197044.9ENST00000357901hsa-miR-4735-5p11783340117833478mer-1a1178332811783347152-9.84
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-550a-3-5p11783661117836688mer-1a1178364911783668140-12.5
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-550a-5p11783661117836688mer-1a1178364611783668140-16.78
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-550a-5p11783661117836688mer-1a1178364611783668140-16.78
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-550b-2-5p11783662117836687mer-m81178364811783669145-14.49
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-550b-2-5p11783662117836687mer-m81178364811783669145-14.49
CAediting_1298522chr19_11783346_+ENSG00000197044.9ENST00000357901hsa-miR-576-5p11783342117833487mer-m81178332811783349154-8.41
CAediting_1298530chr19_11783571_+ENSG00000197044.9ENST00000357901hsa-miR-6509-3p11783569117835768mer-1a1178355711783576148-13.78
CAediting_1298535chr19_11783901_+ENSG00000197044.9ENST00000357901hsa-miR-6769b-3p11783898117839058mer-1a1178388611783905153-16.56
CAediting_1298529chr19_11783507_+ENSG00000197044.9ENST00000357901hsa-miR-684411783502117835087mer-m81178348911783509153-8.54
CAediting_1298534chr19_11783667_+ENSG00000197044.9ENST00000357901hsa-miR-6889-3p11783663117836708mer-1a1178364811783670149-14.75
CAediting_1298530chr19_11783571_+ENSG00000197044.9ENST00000357901hsa-miR-892a11783566117835727mer-m81178355311783573144-15.69
CAediting_1298533chr19_11783649_+ENSG00000197044.9ENST00000357901hsa-miR-989811783645117836517mer-m81178362911783652142-14.22

check button RNA A-to-I editing in lncRNA gained miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in lncRNA lost miRNA binding sites.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs lost binding to lncRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy

check button RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_1229414chr17_67471546_+ENSG00000197044.9ENST00000409902hsa-miR-548aa11778134117781407mer-m81177812011778141155-16.6
CAediting_228905chr2_188297554_+ENSG00000197044.9ENST00000409902hsa-miR-561-3p11780322117803298mer-1a1178030911780329144-12.21

check button RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.
CAeditom_IDPositionENSGENSTmiRNATargetscan startTargetscan endTargetscan scoreMiranda startMiranda endMiranda scoreMiranda energy
CAediting_396018chr5_1062918_-ENSG00000197044.9ENST00000357901hsa-miR-463511782755117827617mer-m81178274311782762145-11.2
CAediting_228905chr2_188297554_+ENSG00000197044.9ENST00000357901hsa-miR-561-3p11783315117833217mer-m81178330111783322143-5.62
CAediting_228905chr2_188297554_+ENSG00000197044.9ENST00000357901hsa-miR-561-3p11782108117821147mer-m81178209011782115143-6.92
CAediting_228905chr2_188297554_+ENSG00000197044.9ENST00000357901hsa-miR-561-3p11782126117821327mer-m81178211111782133141-7.43
CAediting_393chr1_1167164_+ENSG00000197044.9ENST00000409902hsa-miR-200b-3p11780093117800997mer-m81178007911780100149-13.64
CAediting_228905chr2_188297554_+ENSG00000197044.9ENST00000409902hsa-miR-561-3p11782108117821147mer-m81178209011782115143-6.92
CAediting_228905chr2_188297554_+ENSG00000197044.9ENST00000409902hsa-miR-561-3p11782126117821327mer-m81178211111782133141-7.43
CAediting_1399425chr20_1392958_-ENSG00000197044.9ENST00000409902hsa-miR-6869-5p11781055117810617mer-m81178104111781062147-20.97

check button Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for ZNF441

check button - RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.
ENSTENST typeRNA structure without RNA A-to-I editing.RNA structure with RNA A-to-I editing.

check button RNA A-to-I editing in RNA structures for Minimum free energy (MFE).
CAeditom_IDENSTEditing_PositionMFE_withoneAIMFE_withoutAIMFE_withmultipleAI

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Relation with ADAR for ZNF441

check button Correlation between ADAR gene expression and RNA editing frequency
CancerCAeditomIDpositionADAR1 (p-val)ADAR1 (coeff.)ADAR2 (p-val)ADAR2 (coeff.)ADAR3 (p-val)ADAR3 (coeff.)

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Relation with cancer stages for ZNF441

check button Correlation between Cancer stages and RNA editing frequency
CancerStage_typeCAeditomIDpositionP-valCoeff.

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Relation with survival for ZNF441

check button Correlation between RNA editing and survival
CancerCAeditomIDpositionKMpvalueCoxpvalueCoxHR

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RelatedDrugs for ZNF441

check button Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)
GeneUniProtAccDrugBank IDDrug nameDrug activityDrug typeDrug status

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RelatedDiseases for ZNF441

check button Diseases associated with this gene.
(DisGeNet 7.0)
GeneDisease IDDisease name# pubmedsSource