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Editing gene: LSM12 (CAeditome ID:124801)

Gene summary for LSM12

Gene summary

Gene information	Gene symbol	LSM12
	Gene ID	124801
	Gene name	LSM12 homolog
	Synonyms	PNAS-135
	Cytomap	17q21.31
	Type of gene	protein-coding
	Description	protein LSM12 homolog
	Modification date	20210518
	UniProtAcc	Q3MHD2
	Context

Gene ontology of each this gene with evidence of Inferred from Direct Assay (IDA) from Entrez

Gene

GO ID

GO term

PubMed ID

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RNA A-to-I events for LSM12

RNA A-to-I editing events across TCGA 33 cancers data sets based on Ensembl gene isoform structure.

RNA editing frequencies across 33 cancers of gene: ENSG00000161654.8

RNA A-to-I editing events in Cancer.

CAediting_1201020(44036877, -), CAediting_1201021(44036878, -), CAediting_1201022(44036904, -), CAediting_1201023(44036980, -), CAediting_1201024(44036995, -), CAediting_1201025(44037052, -), CAediting_1201026(44037098, -), CAediting_1201027(44038090, -), CAediting_1201028(44038092, -), CAediting_1201029(44038104, -), CAediting_1201030(44038105, -), CAediting_1201031(44038119, -), CAediting_1201032(44038131, -), CAediting_1201033(44038157, -), CAediting_1201034(44038232, -), CAediting_1201035(44038242, -), CAediting_1201036(44038543, -), CAediting_1201037(44038579, -), CAediting_1201038(44039083, -), CAediting_1201039(44039084, -), CAediting_1201040(44039085, -), CAediting_1201041(44039127, -), CAediting_1201042(44039138, -), CAediting_1201043(44039151, -), CAediting_1201044(44039166, -), CAediting_1201045(44039192, -), CAediting_1201046(44039215, -), CAediting_1201047(44039219, -), CAediting_1201048(44039230, -), CAediting_1201049(44039233, -), CAediting_1201050(44039236, -), CAediting_1201051(44039279, -), CAediting_1201052(44039583, -), CAediting_1201053(44039654, -), CAediting_1201054(44042163, -), CAediting_1201055(44042165, -), CAediting_1201056(44043724, -), CAediting_1201057(44043725, -), CAediting_1201058(44045160, -), CAediting_1201059(44045321, -), CAediting_1201060(44045685, -), CAediting_1201061(44045691, -), CAediting_1201062(44045735, -), CAediting_1201063(44045832, -), CAediting_1201064(44045840, -), CAediting_1201065(44046518, -), CAediting_1201066(44046526, -), CAediting_1201067(44046595, -), CAediting_1201068(44046798, -), CAediting_1201069(44046859, -), CAediting_1201070(44046868, -), CAediting_1201071(44046920, -), CAediting_1201072(44046935, -), CAediting_1201073(44047002, -), CAediting_1201074(44047332, -), CAediting_1201075(44047601, -), CAediting_1201076(44047791, -), CAediting_1201077(44047850, -), CAediting_1201078(44047855, -), CAediting_1201079(44047856, -), CAediting_1201080(44047933, -), CAediting_1201081(44047966, -), CAediting_1201082(44047967, -), CAediting_1201083(44048425, -), CAediting_1201084(44048436, -), CAediting_1201085(44048946, -), CAediting_1201086(44048992, -), CAediting_1201087(44049069, -), CAediting_1201088(44049241, -), CAediting_1201089(44049341, -), CAediting_1201090(44049347, -), CAediting_1201091(44049375, -), CAediting_1201092(44049416, -), CAediting_1201093(44049474, -), CAediting_1201094(44049477, -), CAediting_1201095(44049497, -), CAediting_1201096(44049505, -), CAediting_1201097(44050215, -), CAediting_1201098(44050237, -), CAediting_1201099(44050238, -), CAediting_1201100(44050306, -), CAediting_1201101(44050356, -), CAediting_1201102(44050382, -), CAediting_1201103(44050383, -), CAediting_1201104(44050591, -), CAediting_1201105(44050605, -), CAediting_1201106(44050615, -), CAediting_1201107(44050669, -), CAediting_1201108(44050685, -), CAediting_1201109(44050737, -), CAediting_1201110(44050794, -), CAediting_1201111(44050890, -), CAediting_1201112(44050930, -), CAediting_1201113(44051106, -), CAediting_1201114(44051220, -), CAediting_1201115(44051531, -), CAediting_1201116(44051539, -), CAediting_1201117(44051862, -), CAediting_1201118(44051863, -), CAediting_1201119(44051978, -), CAediting_1201120(44051986, -), CAediting_1201121(44052104, -), CAediting_1201122(44052105, -), CAediting_1201123(44052502, -), CAediting_1201124(44052637, -), CAediting_1201125(44052659, -), CAediting_1201126(44052676, -), CAediting_1201127(44054378, -), CAediting_1201128(44054388, -), CAediting_1201129(44054396, -), CAediting_1201130(44054409, -), CAediting_1201131(44054410, -), CAediting_1201132(44054415, -), CAediting_1201133(44054475, -), CAediting_1201134(44054478, -), CAediting_1201135(44054486, -), CAediting_1201136(44054487, -), CAediting_1201137(44054489, -), CAediting_1201138(44054505, -), CAediting_1201139(44054525, -), CAediting_1201140(44054533, -), CAediting_1201141(44054548, -), CAediting_1201142(44054579, -), CAediting_1201143(44054585, -), CAediting_1201144(44054896, -), CAediting_1201145(44054915, -), CAediting_1201146(44054924, -), CAediting_1201147(44054987, -), CAediting_1201148(44055003, -), CAediting_1201149(44055020, -), CAediting_1201150(44055079, -), CAediting_1201151(44055092, -), CAediting_1201152(44055114, -), CAediting_1201153(44055117, -), CAediting_1201154(44055122, -), CAediting_1201155(44055123, -), CAediting_1201156(44055129, -), CAediting_1201157(44056891, -), CAediting_1201158(44056931, -), CAediting_1201159(44056986, -), CAediting_1201160(44057044, -), CAediting_1201161(44057104, -), CAediting_1201162(44057109, -), CAediting_1201163(44057314, -), CAediting_1201164(44057325, -), CAediting_1201165(44057543, -), CAediting_1201166(44057612, -), CAediting_1201167(44057620, -), CAediting_1201168(44057648, -), CAediting_1201169(44057665, -), CAediting_1201170(44057683, -), CAediting_1201171(44057707, -), CAediting_1201172(44057718, -), CAediting_1201173(44057753, -), CAediting_1201174(44058047, -), CAediting_1201175(44058484, -), CAediting_1201176(44058995, -), CAediting_1201177(44058999, -), CAediting_1201178(44059138, -), CAediting_1201179(44059169, -), CAediting_1201180(44059338, -), CAediting_1201181(44059344, -), CAediting_1201182(44065313, -),

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RNA editing positional annotations for LSM12 using Annovar

Protein coding RNA editing(s).

CAeditome ID

Position

Variant type

ENST

NTchange

AAchange

SIFT_score

Polyphen2_HVAR_score

PROVEAN_pred

Gene structure information of RNA editing(s).

CAeditome ID	Position	Variant type
CAediting_1201020	chr17_44036877_-	ncRNA_intronic
CAediting_1201021	chr17_44036878_-	ncRNA_intronic
CAediting_1201022	chr17_44036904_-	ncRNA_intronic
CAediting_1201023	chr17_44036980_-	exonic
CAediting_1201024	chr17_44036995_-	exonic
CAediting_1201025	chr17_44037052_-	exonic
CAediting_1201026	chr17_44037098_-	exonic
CAediting_1201027	chr17_44038090_-	ncRNA_intronic
CAediting_1201028	chr17_44038092_-	ncRNA_intronic
CAediting_1201029	chr17_44038104_-	ncRNA_intronic
CAediting_1201030	chr17_44038105_-	ncRNA_intronic
CAediting_1201031	chr17_44038119_-	ncRNA_intronic
CAediting_1201032	chr17_44038131_-	ncRNA_intronic
CAediting_1201033	chr17_44038157_-	ncRNA_intronic
CAediting_1201034	chr17_44038232_-	ncRNA_intronic
CAediting_1201035	chr17_44038242_-	ncRNA_intronic
CAediting_1201036	chr17_44038543_-	ncRNA_intronic
CAediting_1201037	chr17_44038579_-	ncRNA_intronic
CAediting_1201038	chr17_44039083_-	ncRNA_intronic
CAediting_1201039	chr17_44039084_-	ncRNA_intronic
CAediting_1201040	chr17_44039085_-	ncRNA_intronic
CAediting_1201041	chr17_44039127_-	ncRNA_intronic
CAediting_1201042	chr17_44039138_-	ncRNA_intronic
CAediting_1201043	chr17_44039151_-	ncRNA_intronic
CAediting_1201044	chr17_44039166_-	ncRNA_intronic
CAediting_1201045	chr17_44039192_-	ncRNA_intronic
CAediting_1201046	chr17_44039215_-	ncRNA_intronic
CAediting_1201047	chr17_44039219_-	ncRNA_intronic
CAediting_1201048	chr17_44039230_-	ncRNA_intronic
CAediting_1201049	chr17_44039233_-	ncRNA_intronic
CAediting_1201050	chr17_44039236_-	ncRNA_intronic
CAediting_1201051	chr17_44039279_-	ncRNA_intronic
CAediting_1201052	chr17_44039583_-	ncRNA_intronic
CAediting_1201053	chr17_44039654_-	ncRNA_intronic
CAediting_1201054	chr17_44042163_-	intronic
CAediting_1201055	chr17_44042165_-	intronic
CAediting_1201056	chr17_44043724_-	intronic
CAediting_1201057	chr17_44043725_-	intronic
CAediting_1201058	chr17_44045160_-	intronic
CAediting_1201059	chr17_44045321_-	intronic
CAediting_1201060	chr17_44045685_-	intronic
CAediting_1201061	chr17_44045691_-	intronic
CAediting_1201062	chr17_44045735_-	intronic
CAediting_1201063	chr17_44045832_-	intronic
CAediting_1201064	chr17_44045840_-	intronic
CAediting_1201065	chr17_44046518_-	intronic
CAediting_1201066	chr17_44046526_-	intronic
CAediting_1201067	chr17_44046595_-	intronic
CAediting_1201068	chr17_44046798_-	intronic
CAediting_1201069	chr17_44046859_-	intronic
CAediting_1201070	chr17_44046868_-	intronic
CAediting_1201071	chr17_44046920_-	intronic
CAediting_1201072	chr17_44046935_-	intronic
CAediting_1201073	chr17_44047002_-	intronic
CAediting_1201074	chr17_44047332_-	intronic
CAediting_1201075	chr17_44047601_-	intronic
CAediting_1201076	chr17_44047791_-	intronic
CAediting_1201077	chr17_44047850_-	intronic
CAediting_1201078	chr17_44047855_-	intronic
CAediting_1201079	chr17_44047856_-	intronic
CAediting_1201080	chr17_44047933_-	intronic
CAediting_1201081	chr17_44047966_-	intronic
CAediting_1201082	chr17_44047967_-	intronic
CAediting_1201083	chr17_44048425_-	intronic
CAediting_1201084	chr17_44048436_-	intronic
CAediting_1201085	chr17_44048946_-	intronic
CAediting_1201086	chr17_44048992_-	intronic
CAediting_1201087	chr17_44049069_-	intronic
CAediting_1201088	chr17_44049241_-	intronic
CAediting_1201089	chr17_44049341_-	intronic
CAediting_1201090	chr17_44049347_-	intronic
CAediting_1201091	chr17_44049375_-	intronic
CAediting_1201092	chr17_44049416_-	intronic
CAediting_1201093	chr17_44049474_-	intronic
CAediting_1201094	chr17_44049477_-	intronic
CAediting_1201095	chr17_44049497_-	intronic
CAediting_1201096	chr17_44049505_-	intronic
CAediting_1201097	chr17_44050215_-	intronic
CAediting_1201098	chr17_44050237_-	intronic
CAediting_1201099	chr17_44050238_-	intronic
CAediting_1201100	chr17_44050306_-	intronic
CAediting_1201101	chr17_44050356_-	intronic
CAediting_1201102	chr17_44050382_-	intronic
CAediting_1201103	chr17_44050383_-	intronic
CAediting_1201104	chr17_44050591_-	intronic
CAediting_1201105	chr17_44050605_-	intronic
CAediting_1201106	chr17_44050615_-	intronic
CAediting_1201107	chr17_44050669_-	intronic
CAediting_1201108	chr17_44050685_-	intronic
CAediting_1201109	chr17_44050737_-	intronic
CAediting_1201110	chr17_44050794_-	intronic
CAediting_1201111	chr17_44050890_-	intronic
CAediting_1201112	chr17_44050930_-	intronic
CAediting_1201113	chr17_44051106_-	intronic
CAediting_1201114	chr17_44051220_-	intronic
CAediting_1201115	chr17_44051531_-	intronic
CAediting_1201116	chr17_44051539_-	intronic
CAediting_1201117	chr17_44051862_-	intronic
CAediting_1201118	chr17_44051863_-	intronic
CAediting_1201119	chr17_44051978_-	intronic
CAediting_1201120	chr17_44051986_-	intronic
CAediting_1201121	chr17_44052104_-	intronic
CAediting_1201122	chr17_44052105_-	intronic
CAediting_1201123	chr17_44052502_-	intronic
CAediting_1201124	chr17_44052637_-	intronic
CAediting_1201125	chr17_44052659_-	intronic
CAediting_1201126	chr17_44052676_-	intronic
CAediting_1201127	chr17_44054378_-	intronic
CAediting_1201128	chr17_44054388_-	intronic
CAediting_1201129	chr17_44054396_-	intronic
CAediting_1201130	chr17_44054409_-	intronic
CAediting_1201131	chr17_44054410_-	intronic
CAediting_1201132	chr17_44054415_-	intronic
CAediting_1201133	chr17_44054475_-	intronic
CAediting_1201134	chr17_44054478_-	intronic
CAediting_1201135	chr17_44054486_-	intronic
CAediting_1201136	chr17_44054487_-	intronic
CAediting_1201137	chr17_44054489_-	intronic
CAediting_1201138	chr17_44054505_-	intronic
CAediting_1201139	chr17_44054525_-	intronic
CAediting_1201140	chr17_44054533_-	intronic
CAediting_1201141	chr17_44054548_-	intronic
CAediting_1201142	chr17_44054579_-	intronic
CAediting_1201143	chr17_44054585_-	intronic
CAediting_1201144	chr17_44054896_-	intronic
CAediting_1201145	chr17_44054915_-	intronic
CAediting_1201146	chr17_44054924_-	intronic
CAediting_1201147	chr17_44054987_-	intronic
CAediting_1201148	chr17_44055003_-	intronic
CAediting_1201149	chr17_44055020_-	intronic
CAediting_1201150	chr17_44055079_-	intronic
CAediting_1201151	chr17_44055092_-	intronic
CAediting_1201152	chr17_44055114_-	intronic
CAediting_1201153	chr17_44055117_-	intronic
CAediting_1201154	chr17_44055122_-	intronic
CAediting_1201155	chr17_44055123_-	intronic
CAediting_1201156	chr17_44055129_-	intronic
CAediting_1201157	chr17_44056891_-	intronic
CAediting_1201158	chr17_44056931_-	intronic
CAediting_1201159	chr17_44056986_-	intronic
CAediting_1201160	chr17_44057044_-	intronic
CAediting_1201161	chr17_44057104_-	intronic
CAediting_1201162	chr17_44057109_-	intronic
CAediting_1201163	chr17_44057314_-	intronic
CAediting_1201164	chr17_44057325_-	intronic
CAediting_1201165	chr17_44057543_-	intronic
CAediting_1201166	chr17_44057612_-	intronic
CAediting_1201167	chr17_44057620_-	intronic
CAediting_1201168	chr17_44057648_-	intronic
CAediting_1201169	chr17_44057665_-	intronic
CAediting_1201170	chr17_44057683_-	intronic
CAediting_1201171	chr17_44057707_-	intronic
CAediting_1201172	chr17_44057718_-	intronic
CAediting_1201173	chr17_44057753_-	intronic
CAediting_1201174	chr17_44058047_-	intronic
CAediting_1201175	chr17_44058484_-	intronic
CAediting_1201176	chr17_44058995_-	intronic
CAediting_1201177	chr17_44058999_-	intronic
CAediting_1201178	chr17_44059138_-	intronic
CAediting_1201179	chr17_44059169_-	intronic
CAediting_1201180	chr17_44059338_-	intronic
CAediting_1201181	chr17_44059344_-	intronic
CAediting_1201182	chr17_44065313_-	intronic

Repat-regional RNA editing(s).

CAeditome ID	Position	Repeat family	Repeat sub family	Repeat name
CAediting_1201020	chr17_44036877_-	SINE	Alu	AluSz
CAediting_1201021	chr17_44036878_-	SINE	Alu	AluSz
CAediting_1201022	chr17_44036904_-	SINE	Alu	AluSz
CAediting_1201023	chr17_44036980_-	SINE	Alu	AluSz
CAediting_1201024	chr17_44036995_-	SINE	Alu	AluSz
CAediting_1201025	chr17_44037052_-	SINE	Alu	AluSz
CAediting_1201026	chr17_44037098_-	SINE	Alu	AluSz
CAediting_1201027	chr17_44038090_-	SINE	Alu	AluJo
CAediting_1201028	chr17_44038092_-	SINE	Alu	AluJo
CAediting_1201029	chr17_44038104_-	SINE	Alu	AluJo
CAediting_1201030	chr17_44038105_-	SINE	Alu	AluJo
CAediting_1201031	chr17_44038119_-	SINE	Alu	AluJo
CAediting_1201032	chr17_44038131_-	SINE	Alu	AluJo
CAediting_1201033	chr17_44038157_-	SINE	Alu	AluJo
CAediting_1201034	chr17_44038232_-	SINE	Alu	AluJo
CAediting_1201035	chr17_44038242_-	SINE	Alu	AluJo
CAediting_1201036	chr17_44038543_-	SINE	Alu	AluSc
CAediting_1201037	chr17_44038579_-	SINE	Alu	AluSc
CAediting_1201038	chr17_44039083_-	SINE	Alu	AluSp
CAediting_1201039	chr17_44039084_-	SINE	Alu	AluSp
CAediting_1201040	chr17_44039085_-	SINE	Alu	AluSp
CAediting_1201041	chr17_44039127_-	SINE	Alu	AluSp
CAediting_1201042	chr17_44039138_-	SINE	Alu	AluSp
CAediting_1201043	chr17_44039151_-	SINE	Alu	AluSp
CAediting_1201044	chr17_44039166_-	SINE	Alu	AluSp
CAediting_1201045	chr17_44039192_-	SINE	Alu	AluSp
CAediting_1201046	chr17_44039215_-	SINE	Alu	AluSp
CAediting_1201047	chr17_44039219_-	SINE	Alu	AluSp
CAediting_1201048	chr17_44039230_-	SINE	Alu	AluSp
CAediting_1201049	chr17_44039233_-	SINE	Alu	AluSp
CAediting_1201050	chr17_44039236_-	SINE	Alu	AluSp
CAediting_1201051	chr17_44039279_-	SINE	Alu	AluSp
CAediting_1201052	chr17_44039583_-	SINE	Alu	AluYb8
CAediting_1201053	chr17_44039654_-	SINE	Alu	AluYb8
CAediting_1201054	chr17_44042163_-	SINE	Alu	AluSx
CAediting_1201055	chr17_44042165_-	SINE	Alu	AluSx
CAediting_1201056	chr17_44043724_-	SINE	Alu	FLAM_C
CAediting_1201057	chr17_44043725_-	SINE	Alu	FLAM_C
CAediting_1201058	chr17_44045160_-	SINE	Alu	AluSg
CAediting_1201059	chr17_44045321_-	SINE	Alu	AluSg
CAediting_1201060	chr17_44045685_-	SINE	Alu	AluJb
CAediting_1201061	chr17_44045691_-	SINE	Alu	AluJb
CAediting_1201062	chr17_44045735_-	SINE	Alu	AluJb
CAediting_1201063	chr17_44045832_-	SINE	Alu	AluJb
CAediting_1201064	chr17_44045840_-	SINE	Alu	AluJb
CAediting_1201065	chr17_44046518_-	SINE	Alu	AluY
CAediting_1201066	chr17_44046526_-	SINE	Alu	AluY
CAediting_1201067	chr17_44046595_-	SINE	Alu	AluY
CAediting_1201068	chr17_44046798_-	SINE	Alu	AluSx3
CAediting_1201069	chr17_44046859_-	SINE	Alu	AluSx3
CAediting_1201070	chr17_44046868_-	SINE	Alu	AluSx3
CAediting_1201071	chr17_44046920_-	SINE	Alu	AluSx3
CAediting_1201072	chr17_44046935_-	SINE	Alu	AluSx3
CAediting_1201073	chr17_44047002_-	SINE	Alu	AluSx3
CAediting_1201074	chr17_44047332_-	SINE	Alu	AluSx
CAediting_1201075	chr17_44047601_-	SINE	Alu	AluJr
CAediting_1201076	chr17_44047791_-	SINE	Alu	AluJr
CAediting_1201077	chr17_44047850_-	SINE	Alu	AluJr
CAediting_1201078	chr17_44047855_-	SINE	Alu	AluJr
CAediting_1201079	chr17_44047856_-	SINE	Alu	AluJr
CAediting_1201080	chr17_44047933_-	SINE	Alu	FLAM_C
CAediting_1201081	chr17_44047966_-	SINE	Alu	FLAM_C
CAediting_1201082	chr17_44047967_-	SINE	Alu	FLAM_C
CAediting_1201083	chr17_44048425_-	SINE	Alu	AluSz
CAediting_1201084	chr17_44048436_-	SINE	Alu	AluSz
CAediting_1201085	chr17_44048946_-	SINE	Alu	AluSz
CAediting_1201086	chr17_44048992_-	SINE	Alu	AluSz
CAediting_1201087	chr17_44049069_-	SINE	Alu	AluSz
CAediting_1201089	chr17_44049341_-	SINE	Alu	AluJr
CAediting_1201090	chr17_44049347_-	SINE	Alu	AluJr
CAediting_1201091	chr17_44049375_-	SINE	Alu	AluJr
CAediting_1201092	chr17_44049416_-	SINE	Alu	AluJr
CAediting_1201093	chr17_44049474_-	SINE	Alu	AluJr
CAediting_1201094	chr17_44049477_-	SINE	Alu	AluJr
CAediting_1201095	chr17_44049497_-	SINE	Alu	AluJr
CAediting_1201096	chr17_44049505_-	SINE	Alu	AluJr
CAediting_1201097	chr17_44050215_-	SINE	Alu	AluSq2
CAediting_1201098	chr17_44050237_-	SINE	Alu	AluSq2
CAediting_1201099	chr17_44050238_-	SINE	Alu	AluSq2
CAediting_1201100	chr17_44050306_-	SINE	Alu	AluSq2
CAediting_1201101	chr17_44050356_-	SINE	Alu	AluSq2
CAediting_1201102	chr17_44050382_-	SINE	Alu	AluSq2
CAediting_1201103	chr17_44050383_-	SINE	Alu	AluSq2
CAediting_1201104	chr17_44050591_-	SINE	Alu	AluSz
CAediting_1201105	chr17_44050605_-	SINE	Alu	AluSz
CAediting_1201106	chr17_44050615_-	SINE	Alu	AluSz
CAediting_1201107	chr17_44050669_-	SINE	Alu	AluSz
CAediting_1201108	chr17_44050685_-	SINE	Alu	AluSz
CAediting_1201109	chr17_44050737_-	SINE	Alu	AluSz
CAediting_1201110	chr17_44050794_-	SINE	Alu	AluSz
CAediting_1201111	chr17_44050890_-	SINE	Alu	AluJb
CAediting_1201112	chr17_44050930_-	SINE	Alu	AluJb
CAediting_1201113	chr17_44051106_-	SINE	Alu	AluSc
CAediting_1201114	chr17_44051220_-	SINE	Alu	AluSx3
CAediting_1201115	chr17_44051531_-	SINE	Alu	AluSc
CAediting_1201116	chr17_44051539_-	SINE	Alu	AluSc
CAediting_1201117	chr17_44051862_-	SINE	Alu	AluSz
CAediting_1201118	chr17_44051863_-	SINE	Alu	AluSz
CAediting_1201119	chr17_44051978_-	SINE	Alu	AluSz
CAediting_1201120	chr17_44051986_-	SINE	Alu	AluSz
CAediting_1201121	chr17_44052104_-	SINE	Alu	AluSz
CAediting_1201122	chr17_44052105_-	SINE	Alu	AluSz
CAediting_1201123	chr17_44052502_-	SINE	Alu	AluSq2
CAediting_1201124	chr17_44052637_-	SINE	Alu	AluSq2
CAediting_1201125	chr17_44052659_-	SINE	Alu	AluSq2
CAediting_1201126	chr17_44052676_-	SINE	Alu	AluSq2
CAediting_1201127	chr17_44054378_-	SINE	Alu	AluJr
CAediting_1201128	chr17_44054388_-	SINE	Alu	AluJr
CAediting_1201129	chr17_44054396_-	SINE	Alu	AluJr
CAediting_1201130	chr17_44054409_-	SINE	Alu	AluJr
CAediting_1201131	chr17_44054410_-	SINE	Alu	AluJr
CAediting_1201132	chr17_44054415_-	SINE	Alu	AluJr
CAediting_1201133	chr17_44054475_-	SINE	Alu	AluJr
CAediting_1201134	chr17_44054478_-	SINE	Alu	AluJr
CAediting_1201135	chr17_44054486_-	SINE	Alu	AluJr
CAediting_1201136	chr17_44054487_-	SINE	Alu	AluJr
CAediting_1201137	chr17_44054489_-	SINE	Alu	AluJr
CAediting_1201138	chr17_44054505_-	SINE	Alu	AluJr
CAediting_1201139	chr17_44054525_-	SINE	Alu	AluJr
CAediting_1201140	chr17_44054533_-	SINE	Alu	AluJr
CAediting_1201141	chr17_44054548_-	SINE	Alu	AluJr
CAediting_1201142	chr17_44054579_-	SINE	Alu	AluJr
CAediting_1201143	chr17_44054585_-	SINE	Alu	AluJr
CAediting_1201144	chr17_44054896_-	SINE	Alu	AluSx3
CAediting_1201145	chr17_44054915_-	SINE	Alu	AluSx3
CAediting_1201146	chr17_44054924_-	SINE	Alu	AluSx3
CAediting_1201147	chr17_44054987_-	SINE	Alu	AluSx3
CAediting_1201148	chr17_44055003_-	SINE	Alu	AluSx3
CAediting_1201149	chr17_44055020_-	SINE	Alu	AluSx3
CAediting_1201150	chr17_44055079_-	SINE	Alu	AluSx3
CAediting_1201151	chr17_44055092_-	SINE	Alu	AluSx3
CAediting_1201152	chr17_44055114_-	SINE	Alu	AluSx3
CAediting_1201153	chr17_44055117_-	SINE	Alu	AluSx3
CAediting_1201154	chr17_44055122_-	SINE	Alu	AluSx3
CAediting_1201155	chr17_44055123_-	SINE	Alu	AluSx3
CAediting_1201156	chr17_44055129_-	SINE	Alu	AluSx3
CAediting_1201157	chr17_44056891_-	SINE	Alu	AluSp
CAediting_1201158	chr17_44056931_-	SINE	Alu	AluSp
CAediting_1201159	chr17_44056986_-	SINE	Alu	AluSp
CAediting_1201160	chr17_44057044_-	SINE	Alu	AluSx3
CAediting_1201161	chr17_44057104_-	SINE	Alu	AluSx3
CAediting_1201162	chr17_44057109_-	SINE	Alu	AluSx3
CAediting_1201163	chr17_44057314_-	SINE	Alu	AluY
CAediting_1201164	chr17_44057325_-	SINE	Alu	AluY
CAediting_1201165	chr17_44057543_-	SINE	Alu	AluSg7
CAediting_1201166	chr17_44057612_-	SINE	Alu	AluSg7
CAediting_1201167	chr17_44057620_-	SINE	Alu	AluSg7
CAediting_1201168	chr17_44057648_-	SINE	Alu	AluSg7
CAediting_1201169	chr17_44057665_-	SINE	Alu	AluSg7
CAediting_1201170	chr17_44057683_-	SINE	Alu	AluSg7
CAediting_1201171	chr17_44057707_-	SINE	Alu	AluSg7
CAediting_1201172	chr17_44057718_-	SINE	Alu	AluSg7
CAediting_1201173	chr17_44057753_-	SINE	Alu	AluSg7
CAediting_1201174	chr17_44058047_-	SINE	Alu	AluY
CAediting_1201175	chr17_44058484_-	SINE	Alu	AluJo
CAediting_1201176	chr17_44058995_-	SINE	Alu	AluJo
CAediting_1201177	chr17_44058999_-	SINE	Alu	AluJo
CAediting_1201178	chr17_44059138_-	SINE	Alu	AluJr
CAediting_1201179	chr17_44059169_-	SINE	Alu	AluJr
CAediting_1201180	chr17_44059338_-	SINE	Alu	AluSx1
CAediting_1201181	chr17_44059344_-	SINE	Alu	AluSx1
CAediting_1201182	chr17_44065313_-	SINE	Alu	AluSc5

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RNA A-to-I editing events in the alternative splicing sites for LSM12

RNA A-to-I editing(s) in the alternative splicing sites.

AStype	CAeditomID	Editing position	AS position	AS direction	Exonic location	Wildtype sequence	Wildtype splicing strength	RNA edited sequence	RNA edited splicing strength
ES	CAediting_1201026	chr17_44037098_-	44037098:44037120	3SS	3+0i	TGAGTTTTTCTTTTTTAGAGACA	-1.84	TGAGTTTTTCTTTTTTAGAGACG	-0.08
ES	CAediting_1201027	chr17_44038090_-	44038082:44038090	5SS	3+0i	AGGTGTGAG	-23.3	GGGTGTGAG	-27.16

Differential percent of spliced in (PSI) between RNA A-to-I edited and non-edited samples for ENSG00000161654.8.LSM12.

Correlation between RNA A-to-I editing and PSI for ENSG00000161654.8.LSM12.

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Differntial gene expression between RNA A-to-I edited versus non-edited samples for LSM12

Differential gene expressions between RNA A-to-I edited and non-edited tumor samples.
* The grey color means N/A.

Correlation between RNA A-to-I editing and gene expression.

- Differentially expressed gene between RNA A-to-I edited samples versus non-edited samples.
* Click on the image to enlarge it in a new window.

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Protein coding region RNA A-to-I editings for LSM12

- Lollipop plot for RNA A-to-I editings across protein structure.
* Click on the image to enlarge it in a new window.

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The effects of the RNA editing to the miRNA binding sites for LSM12

**If you are searching a miRNA gene with RNA editing events in its seed regions, please see the search pages of miRNA targets to discover the effects of this RNA editing event to miRNA regulations. For more information, please check the files in the Download page.

RNA A-to-I editing in the 3'-UTR regions of mRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in the 3'-UTR regions of mRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA gained miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in lncRNA lost miRNA binding sites.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to lncRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs gained binding to the 3'-UTR region of mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

RNA A-to-I editing in miRNAs lost binding to the 3'-UTR mRNA.

CAeditom_ID

Position

ENSG

ENST

miRNA

Targetscan start

Targetscan end

Targetscan score

Miranda start

Miranda end

Miranda score

Miranda energy

Differentially expressed gene-miRNA network

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The effects of the RNA editing to the stability of the RNA structures for LSM12

- RNA A-to-I editing in mRNA.
* Click on the image to enlarge it in a new window.

ENST

ENST type

RNA structure without RNA A-to-I editing.

RNA structure with RNA A-to-I editing.

RNA A-to-I editing in RNA structures for Minimum free energy (MFE).

CAeditom_ID

ENST

Editing_Position

MFE_withoneAI

MFE_withoutAI

MFE_withmultipleAI

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Relation with ADAR for LSM12

Correlation between ADAR gene expression and RNA editing frequency

Cancer

CAeditomID

position

ADAR1 (p-val)

ADAR1 (coeff.)

ADAR2 (p-val)

ADAR2 (coeff.)

ADAR3 (p-val)

ADAR3 (coeff.)

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Relation with cancer stages for LSM12

Correlation between Cancer stages and RNA editing frequency

Cancer

Stage_type

CAeditomID

position

P-val

Coeff.

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Relation with survival for LSM12

Correlation between RNA editing and survival

Cancer

CAeditomID

position

KMpvalue

Coxpvalue

CoxHR

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RelatedDrugs for LSM12

Approved drugs targeting this gene.
(DrugBank Version 5.1.8 2021-01-03)

Gene

UniProtAcc

DrugBank ID

Drug name

Drug activity

Drug type

Drug status

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RelatedDiseases for LSM12

Diseases associated with this gene.
(DisGeNet 7.0)

Gene

Disease ID

Disease name

# pubmeds

Source

	Gene summary
	RNA A-to-I events
	Differntial gene expression between RNA A-to-I edited tumor samples versus normal samples
	Protein coding region RNA A-to-I editings
	The effects of the RNA editing to the miRNA binding sites
	The effects of the RNA editing to the stability of the RNA structures
	Relation with ADAR
	Relation with cancer stages
	Relation with survival state
	Related drugs with this gene
	Related diseases with this gene